BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7788
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41
PE=1 SV=2
Length = 622
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
Query: 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES 60
M + + IGRTGRSG TG+ATTFINK+ DESVL+DLK LLLEA+Q++PP L L
Sbjct: 509 MPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 568
Query: 61 ETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSNQADY 115
E LD+GG ERGCA+CGGLGHRIT CPKLEA+QTK S+IGR+DYL + D+
Sbjct: 569 GDESMLDIGG-ERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF 622
>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41
PE=1 SV=2
Length = 622
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
Query: 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES 60
M + + IGRTGRSG TG+ATTFINK+ DESVL+DLK LLLEA+Q++PP L L
Sbjct: 509 MPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 568
Query: 61 ETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSNQADY 115
E LD+GG ERGCA+CGGLGHRIT CPKLEA+QTK S+IGR+DYL + D+
Sbjct: 569 GDESMLDIGG-ERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF 622
>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster
GN=abs PE=1 SV=1
Length = 619
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 83/105 (79%), Gaps = 2/105 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETE-KFLDLGG 70
IGRTGRS GLATT INK+ ++SVLLDLKHLL+E +Q +P FL EL ETE + LDLG
Sbjct: 516 IGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLG- 574
Query: 71 DERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSNQADY 115
D GC YCGGLGHRIT CPKLEAVQ K AS+IGRRDYL++ ADY
Sbjct: 575 DSHGCTYCGGLGHRITECPKLEAVQNKQASNIGRRDYLSNTAADY 619
>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis
thaliana GN=RH43 PE=3 SV=1
Length = 542
Score = 122 bits (305), Expect = 9e-28, Method: Composition-based stats.
Identities = 63/103 (61%), Positives = 73/103 (70%), Gaps = 5/103 (4%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELE---SETEKFLDL 68
IGRTGR GKTG+ATTFINK+ E LLDLKHLL EA+QRIPP LAEL ETE +
Sbjct: 436 IGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANA 495
Query: 69 GGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSN 111
G +GCAYCGGLGHRI CPK E ++ A SS R+D+ S+
Sbjct: 496 SG-VKGCAYCGGLGHRILQCPKFEHQKSVAISS-SRKDHFGSD 536
>sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana
GN=RH35 PE=2 SV=1
Length = 591
Score = 122 bits (305), Expect = 9e-28, Method: Composition-based stats.
Identities = 64/102 (62%), Positives = 71/102 (69%), Gaps = 5/102 (4%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELE---SETEKFLDL 68
IGRTGR GKTG+ATTFINK+ E+ LLDLKHLL EA+QRIPP LAEL E E +
Sbjct: 485 IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANA 544
Query: 69 GGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNS 110
G +GCAYCGGLGHRI CPKLE Q A S R+DY S
Sbjct: 545 SG-VKGCAYCGGLGHRIRDCPKLEH-QKSVAISNSRKDYFGS 584
>sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp.
japonica GN=Os02g0150100 PE=2 SV=2
Length = 627
Score = 116 bits (291), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/89 (64%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES--ETEKFLDLG 69
IGRTGR GKTG+ATTFINK+ E+ LLDLKHLL EA+QRIPP LAEL E E+ +
Sbjct: 521 IGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEETMAKE 580
Query: 70 GDERGCAYCGGLGHRITACPKLEAVQTKA 98
+GCAYCGGLGHR+T CPKLE ++ A
Sbjct: 581 SGVKGCAYCGGLGHRVTDCPKLEHQKSMA 609
>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp.
japonica GN=Os06g0697200 PE=3 SV=1
Length = 619
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 68/100 (68%), Gaps = 4/100 (4%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEK---FLDL 68
IGRTGR GKTG+ATTFINK+ E+ LLDLK LL+E++QR+PP LA+L+ E +
Sbjct: 512 IGRTGRRGKTGVATTFINKNQTETTLLDLKQLLIESKQRLPPILADLDDPQEDDKVAIAQ 571
Query: 69 GGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYL 108
+GCA+CGGLGHRI ACPK + +Q + R DY
Sbjct: 572 QSGVKGCAFCGGLGHRIEACPK-QQLQNSVTLARARSDYF 610
>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium
discoideum GN=ddx41 PE=1 SV=1
Length = 671
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 53/116 (45%), Positives = 70/116 (60%), Gaps = 18/116 (15%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET---EKFLDL 68
IGRTGR G G+ATTFINK+N ES+LLDLK+LL+EA+Q++PP L E+ + +K D
Sbjct: 562 IGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQDR 621
Query: 69 GG---------DERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSNQADY 115
G D + C YC G GHR+ CPKL+ K A +RD+ S D+
Sbjct: 622 NGNTGGGADDDDTKPCEYCDGRGHRLVNCPKLK----KQAGP--KRDFFGSGGGDW 671
>sp|Q75B50|DED1_ASHGO ATP-dependent RNA helicase DED1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DED1
PE=3 SV=2
Length = 623
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G TGLAT F N+ N ++V+ +L +L EA Q +P FL+++ E
Sbjct: 490 IGRTGRAGNTGLATAFFNRGN-KNVVKELVDILEEANQEVPSFLSQIAKE 538
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1
Length = 650
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G TG+AT F N+ N +++ + LL EA Q IPPFL ++ E+
Sbjct: 505 IGRTGRAGNTGVATAFFNRGN-RNIVKGMYELLAEANQEIPPFLNDVMRES 554
>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides immitis (strain RS)
GN=DED1 PE=3 SV=2
Length = 665
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G TGL+T F N+ N V+ DL LL EA Q +P FL + E
Sbjct: 530 IGRTGRAGNTGLSTAFFNRGN-RGVVRDLIELLKEAHQEVPAFLENIARE 578
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G TG+AT+F N SN+++++ L +L EA Q +P FL++L +
Sbjct: 499 IGRTGRAGNTGVATSFFN-SNNQNIVKGLMEILNEANQEVPTFLSDLSRQN 548
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP1 PE=3 SV=1
Length = 617
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G TG+AT+F N SN+++++ L +L EA Q +P FL++L +
Sbjct: 499 IGRTGRAGNTGVATSFFN-SNNQNIVKGLMEILNEANQEVPTFLSDLSRQN 548
>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DED1 PE=3 SV=1
Length = 617
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57
IGRTGR+G TG+AT F N+ N+ +++ L +L EA Q IPPFL +
Sbjct: 490 IGRTGRAGNTGVATAFFNRDNN-NIVKGLYEILEEANQEIPPFLED 534
>sp|A4RHF1|DED1_MAGO7 ATP-dependent RNA helicase DED1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DED1 PE=3 SV=2
Length = 671
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFL 55
IGRTGR+G TG+AT F + ++ V +L ++L EA+Q IPPFL
Sbjct: 537 IGRTGRAGNTGIATAFFDMKDNSGVAQELLNILKEAKQDIPPFL 580
>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp.
japonica GN=Os03g0708600 PE=2 SV=1
Length = 736
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES 60
M ++T IGRTGR+GK GLAT+F+ N + + DLK +L+++ +PP LA E+
Sbjct: 655 MPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTD-IFFDLKQMLIQSNSPVPPELARHEA 713
>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DED1 PE=3 SV=1
Length = 696
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G TG+AT F N+ N V+ DL LL EA Q +P FL + E
Sbjct: 548 IGRTGRAGNTGIATAFFNRGN-RGVVRDLLDLLKEANQEVPSFLESIARE 596
>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2
SV=1
Length = 660
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E + G
Sbjct: 527 IGRTGRVGNLGLATSFFNEKN-INITKDLLDLLVEAKQEVPSWLENMAYEHQYKGGSRGR 585
Query: 72 ERGCAYCGGLGHR 84
+ + GG G R
Sbjct: 586 SKSNRFSGGFGAR 598
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DED1 PE=3 SV=1
Length = 627
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G TG+ATTF N+ N ++V +L LL EA Q +P FL + E
Sbjct: 504 IGRTGRAGNTGVATTFFNRGN-KNVAKELVSLLSEANQEVPSFLTTIMRE 552
>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP1 PE=3 SV=1
Length = 604
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 29/108 (26%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR+G G+AT+F N SN ++ +L LL EA Q +P FL + ++ +F
Sbjct: 483 IGRTGRAGNVGVATSFFN-SNSMNIAKELMDLLTEANQEVPQFLVNMVQDSMRF------ 535
Query: 72 ERGCAYCGGLGHRITACPKLEAVQTKAASSIGR----RDYLNSNQADY 115
G G R ++ S+ GR RDY +SN+ D+
Sbjct: 536 --------GRGGR----------NSRTGSNRGRGSNTRDYRHSNKDDW 565
>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=ded1 PE=3 SV=1
Length = 678
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG+AT F N+ N V+ DL LL EA Q +P FL +
Sbjct: 537 IGRTGRAGNTGIATAFFNRGN-RGVVRDLIDLLKEAHQEVPSFLESI 582
>sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2
Length = 660
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E G
Sbjct: 527 IGRTGRVGNLGLATSFFNEKN-MNITKDLLDLLVEAKQEVPSWLENMAYEHHYKGGSRGR 585
Query: 72 ERGCAYCGGLGHR 84
+ + GG G R
Sbjct: 586 SKSNRFSGGFGAR 598
>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DED1 PE=3 SV=3
Length = 647
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G G+AT F N+ N+++V+ L LL EA Q +P FLA++ E+
Sbjct: 513 IGRTGRAGNVGIATAFFNR-NNKNVVKGLIDLLSEANQEVPDFLAKIGRES 562
>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ded1
PE=3 SV=1
Length = 674
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG+AT F N+SN V+ +L LL EA Q +P FL +
Sbjct: 538 IGRTGRAGNTGIATAFFNRSN-RGVVRELIDLLKEAHQEVPSFLESI 583
>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=ded1 PE=3 SV=1
Length = 675
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG+AT F N+ N V+ DL LL EA Q +P FL +
Sbjct: 536 IGRTGRAGNTGIATAFFNRGN-RGVVRDLIDLLKEAHQEVPSFLESI 581
>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=ded1 PE=3 SV=1
Length = 674
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG+AT F N+ N V+ DL LL EA Q +P FL +
Sbjct: 536 IGRTGRAGNTGIATAFFNRGN-RGVVRDLIDLLKEAHQEVPTFLESI 581
>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DED1 PE=3
SV=1
Length = 675
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G TG+AT F N+ N ++ +L LL EA Q +P FL + E+
Sbjct: 533 IGRTGRAGNTGIATAFFNRGN-RGIVRELMDLLKEANQEVPAFLETIARES 582
>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ded1
PE=3 SV=1
Length = 668
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG+AT F N+ N V+ DL LL EA Q +P FL +
Sbjct: 534 IGRTGRAGNTGIATAFFNRGN-RGVVRDLIDLLKEAHQEVPSFLESI 579
>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ded-1 PE=3 SV=1
Length = 688
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G TG+AT F N+ N V+ +L LL EA Q +P FL + E+
Sbjct: 541 IGRTGRAGNTGIATAFFNRGN-RGVVRELLELLKEANQEVPAFLETIARES 590
>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain
B05.10) GN=ded1 PE=3 SV=1
Length = 683
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G TG++T F N+ N V DL LL EA Q IP FL + E
Sbjct: 533 IGRTGRAGNTGISTAFFNRGN-RGVCRDLIELLKEANQEIPSFLENIARE 581
>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1
Length = 678
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG++T F N+ N V+ DL LL EA Q IP FL +
Sbjct: 533 IGRTGRAGNTGISTAFFNRGN-RGVVRDLIELLKEANQEIPAFLENI 578
>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1
Length = 658
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E G
Sbjct: 527 IGRTGRVGNLGLATSFFNEKN-MNITKDLLDLLVEAKQEVPSWLENM--AYEHHYKGGSR 583
Query: 72 ERGCAYCGGLGHR 84
R + GG G R
Sbjct: 584 GRSKRFSGGFGAR 596
>sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3
Length = 662
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E G
Sbjct: 529 IGRTGRVGNLGLATSFFNERN-INITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSRGR 587
Query: 72 ERGCAYCGGLGHR 84
+ + GG G R
Sbjct: 588 SKSSRFSGGFGAR 600
>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DED1 PE=3 SV=1
Length = 630
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G G+AT F N+ N+++++ L LL EA Q IP FL ++ E+
Sbjct: 501 IGRTGRAGNIGIATAFFNR-NNKNIVKGLVDLLTEANQEIPDFLNKIARES 550
>sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2
Length = 658
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E G
Sbjct: 528 IGRTGRVGNLGLATSFFNERN-LNITKDLLDLLVEAKQEVPSWLESMAYEHH----YKGS 582
Query: 72 ERG---CAYCGGLGHR 84
RG + GG G R
Sbjct: 583 SRGRSKSRFSGGFGAR 598
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEK 64
IGRTGR+GK+G+AT+F+ +D V DLK +L+++ +PP LA E+ K
Sbjct: 664 IGRTGRAGKSGVATSFLT-LHDTEVFYDLKQMLVQSNSAVPPELARHEASRFK 715
>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DED1 PE=3 SV=1
Length = 672
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G G+AT F N+ N+++V+ L LL EA Q +P FL ++ E
Sbjct: 531 IGRTGRAGNVGIATAFFNR-NNKNVVKGLIELLSEANQEVPDFLTKIARE 579
>sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel
PE=1 SV=1
Length = 798
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR G G+AT+F N+ N ++ DL LL+E +Q IP F+ ++ S+
Sbjct: 647 IGRTGRMGNLGVATSFFNEKN-RNICSDLLELLIETKQEIPSFMEDMSSD 695
>sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3
Length = 662
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E G
Sbjct: 529 IGRTGRVGNLGLATSFFNERN-INITKDLLDLLVEAKQEVPSWLENMAFEHHYKGSSRGR 587
Query: 72 ERGCAYCGGLGHR 84
+ + GG G R
Sbjct: 588 SKSSRFSGGFGAR 600
>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DED1 PE=3 SV=1
Length = 688
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G TG+AT F N+ N ++ +L LL EA Q +P FL + E+
Sbjct: 544 IGRTGRAGNTGIATAFFNRGN-RGIVRELLDLLKEANQEVPAFLETIARES 593
>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1
PE=3 SV=1
Length = 676
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG+AT F N+ N V+ +L LL EA Q +P FL +
Sbjct: 540 IGRTGRAGNTGIATAFFNRGN-RGVVRELIDLLKEAHQEVPSFLESI 585
>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=ded1 PE=3 SV=1
Length = 681
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGRTGR+G TG+AT F N+ N V+ +L LL EA Q +P FL +
Sbjct: 539 IGRTGRAGNTGIATAFFNRGN-RGVVRELIDLLKEAHQEVPSFLESI 584
>sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1
PE=1 SV=1
Length = 660
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGD 71
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E G
Sbjct: 528 IGRTGRVGNLGLATSFFNERN-INITKDLLDLLVEAKQEVPSWLENMAFEHH----YKGG 582
Query: 72 ERGCA---YCGGLGHR 84
RG + + GG G R
Sbjct: 583 SRGRSKSRFSGGFGAR 598
>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DED1 PE=3 SV=3
Length = 637
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G G+AT F N+ N+ +V+ + LL EA Q +P FL ++ E
Sbjct: 514 IGRTGRAGNVGIATAFFNR-NNRNVVKGMIELLSEANQEVPDFLQKISRE 562
>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DED1 PE=3 SV=1
Length = 664
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62
IGRTGR+G G+AT F N+ N+++++ + LL EA Q +P FL ++ E+
Sbjct: 520 IGRTGRAGNVGIATAFFNR-NNKNIVKGMLDLLTEANQEVPDFLNKIARES 569
>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DED1 PE=3 SV=1
Length = 637
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G G +T F N+ N ++ DL LL EA Q +P +L E+ SE
Sbjct: 510 IGRTGRAGNVGTSTAFFNRGN-TNIGKDLIELLKEANQEVPQWLVEISSE 558
>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DED1 PE=3 SV=1
Length = 637
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR+G G +T F N+ N ++ DL LL EA Q +P +L E+ SE
Sbjct: 510 IGRTGRAGNVGTSTAFFNRGN-TNIGKDLIELLKEANQEVPQWLVEISSE 558
>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DED1 PE=3 SV=1
Length = 604
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57
IGRTGR+G TGLAT F N N +++ L +L EA Q +P FL +
Sbjct: 487 IGRTGRAGNTGLATAFFNSEN-SNIVKGLHEILTEANQEVPSFLKD 531
>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DED1 PE=1 SV=2
Length = 604
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57
IGRTGR+G TGLAT F N N +++ L +L EA Q +P FL +
Sbjct: 487 IGRTGRAGNTGLATAFFNSEN-SNIVKGLHEILTEANQEVPSFLKD 531
>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3
PE=2 SV=1
Length = 697
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61
IGRTGR G GLAT+F N+ N ++ DL LL+EA+Q +P +L + E
Sbjct: 570 IGRTGRVGNLGLATSFFNEKN-INITKDLLDLLVEAKQEVPSWLENMAYE 618
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,377,278
Number of Sequences: 539616
Number of extensions: 1400114
Number of successful extensions: 5284
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 4952
Number of HSP's gapped (non-prelim): 463
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)