Query psy7788
Match_columns 115
No_of_seqs 191 out of 1505
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:51:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0341|consensus 100.0 2.5E-32 5.5E-37 220.9 5.1 111 1-112 498-610 (610)
2 KOG0336|consensus 99.6 1.1E-15 2.5E-20 125.1 5.7 65 1-66 542-606 (629)
3 KOG0339|consensus 99.5 5.9E-15 1.3E-19 123.1 5.5 82 2-84 546-631 (731)
4 KOG0335|consensus 99.5 6E-15 1.3E-19 122.0 4.7 61 1-62 414-474 (482)
5 KOG0331|consensus 99.5 1.2E-14 2.5E-19 121.4 4.9 61 1-62 418-478 (519)
6 PTZ00110 helicase; Provisional 99.5 8.1E-14 1.8E-18 116.8 5.4 62 1-63 454-515 (545)
7 KOG0334|consensus 99.4 4.7E-13 1E-17 117.7 6.5 89 1-90 690-779 (997)
8 KOG0333|consensus 99.3 4E-13 8.8E-18 112.4 2.2 60 1-61 594-654 (673)
9 KOG0328|consensus 99.3 1.5E-12 3.3E-17 102.8 3.1 57 1-58 343-399 (400)
10 PLN00206 DEAD-box ATP-dependen 99.2 4.2E-12 9.2E-17 105.7 3.9 61 1-62 445-505 (518)
11 COG0513 SrmB Superfamily II DN 99.2 1.4E-11 3E-16 102.9 3.9 56 1-56 350-408 (513)
12 KOG0340|consensus 99.1 3.9E-11 8.4E-16 96.9 3.0 51 1-52 331-381 (442)
13 PRK10590 ATP-dependent RNA hel 99.1 7.4E-11 1.6E-15 96.7 4.4 47 1-48 322-368 (456)
14 KOG0330|consensus 99.1 1.3E-10 2.8E-15 94.7 4.1 49 1-50 377-425 (476)
15 KOG0326|consensus 99.0 9.9E-11 2.1E-15 93.9 2.4 54 1-55 399-452 (459)
16 KOG0344|consensus 99.0 2E-10 4.3E-15 96.8 4.0 60 1-61 465-524 (593)
17 PRK04837 ATP-dependent RNA hel 99.0 9.1E-10 2E-14 89.1 5.3 50 1-51 332-381 (423)
18 KOG0346|consensus 99.0 5.4E-10 1.2E-14 92.3 3.8 46 1-47 380-425 (569)
19 KOG0327|consensus 98.9 2.3E-10 5.1E-15 92.5 1.7 57 1-58 340-396 (397)
20 KOG0338|consensus 98.9 3.4E-10 7.3E-15 95.0 1.9 43 1-44 503-545 (691)
21 KOG0332|consensus 98.9 1E-09 2.2E-14 89.3 3.5 57 3-59 415-472 (477)
22 KOG0342|consensus 98.9 9.2E-10 2E-14 91.6 2.3 42 1-43 407-448 (543)
23 KOG0350|consensus 98.7 5.8E-09 1.3E-13 87.3 3.3 53 1-54 510-566 (620)
24 PRK11776 ATP-dependent RNA hel 98.7 6.8E-09 1.5E-13 84.9 2.9 48 1-49 319-366 (460)
25 KOG0329|consensus 98.7 4.3E-09 9.3E-14 82.7 1.0 54 1-54 325-378 (387)
26 PRK11634 ATP-dependent RNA hel 98.7 8E-09 1.7E-13 88.4 2.2 48 1-49 322-369 (629)
27 PRK04537 ATP-dependent RNA hel 98.7 1.2E-08 2.5E-13 86.4 2.7 47 1-48 334-380 (572)
28 PRK11192 ATP-dependent RNA hel 98.6 1.7E-08 3.7E-13 81.7 2.7 47 1-48 322-368 (434)
29 KOG0348|consensus 98.6 1.8E-08 3.9E-13 85.1 1.7 42 1-43 524-565 (708)
30 PTZ00424 helicase 45; Provisio 98.6 3.7E-08 7.9E-13 78.5 3.2 53 1-54 344-396 (401)
31 PRK01297 ATP-dependent RNA hel 98.6 3.2E-08 6.9E-13 81.4 2.5 52 1-53 412-464 (475)
32 KOG0349|consensus 98.5 2.4E-08 5.3E-13 83.1 0.7 107 1-107 585-724 (725)
33 KOG0347|consensus 98.4 2.2E-07 4.7E-12 78.9 4.1 46 1-47 540-585 (731)
34 KOG0345|consensus 98.4 1.4E-07 3E-12 78.6 2.5 37 1-38 334-370 (567)
35 KOG0343|consensus 98.3 1.6E-07 3.4E-12 79.8 1.6 43 1-43 392-434 (758)
36 KOG4284|consensus 98.3 2.7E-07 5.9E-12 79.7 2.3 40 1-40 349-388 (980)
37 TIGR03817 DECH_helic helicase/ 98.2 7.7E-07 1.7E-11 77.6 1.6 47 1-47 356-403 (742)
38 TIGR00614 recQ_fam ATP-depende 98.1 1.1E-06 2.4E-11 72.5 2.1 41 1-42 303-343 (470)
39 PRK05298 excinuclease ABC subu 98.0 4.5E-06 9.7E-11 71.9 2.6 54 1-55 528-589 (652)
40 PRK12898 secA preprotein trans 97.9 5.2E-06 1.1E-10 71.7 2.7 33 1-34 556-588 (656)
41 PLN03137 ATP-dependent DNA hel 97.9 4.5E-06 9.7E-11 75.7 1.8 40 1-41 757-796 (1195)
42 PRK11057 ATP-dependent DNA hel 97.9 4.9E-06 1.1E-10 70.9 1.4 39 1-40 313-351 (607)
43 KOG0337|consensus 97.8 1.1E-05 2.3E-10 67.0 2.9 44 1-45 338-381 (529)
44 PRK09200 preprotein translocas 97.8 6.4E-06 1.4E-10 72.5 1.1 31 1-31 511-541 (790)
45 TIGR01389 recQ ATP-dependent D 97.5 3.4E-05 7.4E-10 65.3 1.7 39 1-40 301-339 (591)
46 TIGR00631 uvrb excinuclease AB 97.5 5.2E-05 1.1E-09 65.6 2.5 41 1-43 524-564 (655)
47 PRK12900 secA preprotein trans 97.3 0.00017 3.8E-09 64.8 2.6 47 1-48 681-731 (1025)
48 TIGR00963 secA preprotein tran 97.1 0.00029 6.3E-09 61.8 2.6 33 1-34 487-519 (745)
49 TIGR03714 secA2 accessory Sec 97.0 0.00028 6.1E-09 62.1 1.1 31 2-34 509-539 (762)
50 PRK12906 secA preprotein trans 96.9 0.00032 7E-09 62.0 1.0 33 1-34 523-555 (796)
51 PRK04914 ATP-dependent helicas 96.9 0.00066 1.4E-08 61.1 2.9 45 1-46 573-617 (956)
52 PHA02653 RNA helicase NPH-II; 96.9 0.00037 8E-09 60.6 1.0 27 4-31 488-514 (675)
53 COG0514 RecQ Superfamily II DN 96.7 0.00077 1.7E-08 57.9 2.0 42 1-43 307-348 (590)
54 TIGR01587 cas3_core CRISPR-ass 96.5 0.00043 9.4E-09 54.5 -1.2 21 2-22 303-323 (358)
55 TIGR02621 cas3_GSU0051 CRISPR- 96.3 0.0012 2.7E-08 58.7 0.3 26 5-30 364-390 (844)
56 PRK02362 ski2-like helicase; P 96.1 0.0031 6.8E-08 54.9 1.8 30 2-31 366-397 (737)
57 PRK11131 ATP-dependent RNA hel 95.7 0.0032 6.9E-08 58.3 0.2 28 3-31 384-411 (1294)
58 TIGR00580 mfd transcription-re 95.6 0.0058 1.3E-07 55.0 1.7 27 5-31 744-770 (926)
59 PRK13767 ATP-dependent helicas 95.6 0.011 2.4E-07 52.7 3.4 31 1-31 367-398 (876)
60 PRK09751 putative ATP-dependen 95.3 0.011 2.3E-07 55.7 2.3 30 1-31 354-383 (1490)
61 TIGR01970 DEAH_box_HrpB ATP-de 95.3 0.004 8.7E-08 55.3 -0.5 26 5-31 311-336 (819)
62 TIGR00643 recG ATP-dependent D 95.1 0.022 4.9E-07 48.9 3.6 25 5-29 540-564 (630)
63 PRK10917 ATP-dependent DNA hel 94.7 0.03 6.4E-07 48.7 3.4 26 5-30 563-588 (681)
64 PRK11664 ATP-dependent RNA hel 94.6 0.01 2.2E-07 52.8 0.1 27 4-31 313-339 (812)
65 PRK10689 transcription-repair 94.5 0.015 3.2E-07 53.5 1.0 27 4-30 892-918 (1147)
66 TIGR01967 DEAH_box_HrpA ATP-de 94.5 0.0086 1.9E-07 55.6 -0.5 27 4-31 378-404 (1283)
67 PRK01172 ski2-like helicase; P 94.4 0.013 2.7E-07 50.5 0.4 29 3-31 348-378 (674)
68 TIGR00603 rad25 DNA repair hel 93.8 0.054 1.2E-06 47.8 3.0 45 3-47 572-624 (732)
69 PRK00254 ski2-like helicase; P 92.9 0.058 1.3E-06 47.0 1.8 27 5-31 360-388 (720)
70 PRK13766 Hef nuclease; Provisi 92.7 0.1 2.2E-06 45.5 2.9 29 2-31 451-479 (773)
71 KOG0351|consensus 92.2 0.079 1.7E-06 48.0 1.8 40 1-41 562-601 (941)
72 PHA02558 uvsW UvsW helicase; P 91.2 0.11 2.5E-06 43.3 1.6 27 2-28 423-449 (501)
73 COG1111 MPH1 ERCC4-like helica 90.3 0.28 6.1E-06 41.9 3.1 32 6-39 457-488 (542)
74 KOG0950|consensus 85.0 0.6 1.3E-05 42.5 2.1 38 4-42 582-621 (1008)
75 PRK05580 primosome assembly pr 83.9 0.74 1.6E-05 40.2 2.2 26 6-31 524-549 (679)
76 TIGR00595 priA primosomal prot 80.4 1.2 2.7E-05 37.6 2.2 21 6-26 356-376 (505)
77 KOG0948|consensus 74.9 3.5 7.7E-05 37.3 3.5 34 5-38 511-546 (1041)
78 PF14475 Mso1_Sec1_bdg: Sec1-b 71.2 4.2 9.1E-05 23.3 2.1 23 33-55 19-41 (41)
79 PRK09694 helicase Cas3; Provis 70.4 6.4 0.00014 35.7 4.1 17 5-21 649-665 (878)
80 KOG0352|consensus 60.6 4.9 0.00011 34.4 1.4 39 1-40 332-370 (641)
81 PF00098 zf-CCHC: Zinc knuckle 56.7 11 0.00023 17.5 1.7 16 75-90 3-18 (18)
82 PLN02390 molybdopterin synthas 52.7 24 0.00052 24.1 3.6 49 7-57 56-104 (111)
83 PRK09401 reverse gyrase; Revie 48.7 24 0.00052 33.1 4.0 41 3-46 517-561 (1176)
84 KOG0353|consensus 48.3 6.9 0.00015 33.1 0.4 24 11-35 447-470 (695)
85 PRK10678 moaE molybdopterin gu 41.3 45 0.00098 24.0 3.7 50 7-58 80-129 (150)
86 COG1203 CRISPR-associated heli 40.8 11 0.00024 33.3 0.5 29 3-31 520-550 (733)
87 cd00756 MoaE MoaE family. Memb 38.3 49 0.0011 22.8 3.4 48 7-56 67-114 (124)
88 COG0314 MoaE Molybdopterin con 35.9 62 0.0013 23.3 3.7 53 7-61 80-132 (149)
89 COG1205 Distinct helicase fami 34.3 19 0.0004 32.7 0.9 29 1-29 391-420 (851)
90 KOG0953|consensus 33.1 23 0.00051 31.2 1.3 34 8-46 451-487 (700)
91 TIGR01054 rgy reverse gyrase. 31.7 59 0.0013 30.6 3.7 42 3-45 515-558 (1171)
92 KOG0354|consensus 30.8 45 0.00097 30.1 2.6 25 5-31 505-529 (746)
93 KOG0920|consensus 29.0 29 0.00062 32.0 1.2 23 8-31 522-544 (924)
94 PRK12899 secA preprotein trans 28.7 1.6E+02 0.0034 27.6 5.7 23 11-34 661-683 (970)
95 COG1201 Lhr Lhr-like helicases 28.2 39 0.00085 30.7 1.9 29 2-30 332-361 (814)
96 KOG0923|consensus 26.0 34 0.00073 30.9 1.0 25 4-29 580-604 (902)
97 PRK14701 reverse gyrase; Provi 25.8 89 0.0019 30.7 3.8 40 3-45 494-537 (1638)
98 PF13696 zf-CCHC_2: Zinc knuck 24.2 32 0.00069 18.5 0.4 19 72-90 8-26 (32)
99 COG1204 Superfamily II helicas 23.9 52 0.0011 29.6 1.9 27 3-29 378-406 (766)
100 PF00220 Hormone_4: Neurohypop 23.7 33 0.00071 13.4 0.3 6 85-90 3-8 (9)
101 COG1110 Reverse gyrase [DNA re 23.7 80 0.0017 29.8 3.0 42 3-45 527-570 (1187)
102 PF13871 Helicase_C_4: Helicas 23.5 81 0.0018 24.9 2.7 45 1-45 96-143 (278)
103 PRK12903 secA preprotein trans 23.0 2.1E+02 0.0045 26.7 5.4 22 10-31 518-539 (925)
104 KOG4150|consensus 22.6 36 0.00078 30.5 0.6 29 1-29 610-638 (1034)
105 PRK09019 translation initiatio 22.0 2.7E+02 0.0058 19.0 4.9 39 6-45 29-68 (108)
106 COG2921 Uncharacterized conser 21.7 1.8E+02 0.004 19.3 3.7 40 5-46 41-82 (90)
107 KOG0947|consensus 20.8 55 0.0012 30.8 1.4 25 5-29 695-721 (1248)
108 COG1200 RecG RecG-like helicas 20.7 2.8E+02 0.0061 24.9 5.6 35 13-48 573-607 (677)
109 PRK14493 putative bifunctional 20.7 1.4E+02 0.0031 23.2 3.5 47 7-55 213-259 (274)
110 PF05673 DUF815: Protein of un 20.2 3.2E+02 0.0068 21.4 5.3 43 20-63 184-227 (249)
No 1
>KOG0341|consensus
Probab=99.97 E-value=2.5e-32 Score=220.86 Aligned_cols=111 Identities=65% Similarity=1.052 Sum_probs=102.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhhhh--hccCCCCCCCCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEK--FLDLGGDERGCAYC 78 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~--~~~~g~~~~g~~~~ 78 (115)
||.++|+||||||||||.|++|+|+||+++.++...+.+|..+|.+++|++|++|.+++...+. ..+.+ +.+||.||
T Consensus 498 MP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~-~~kGCayC 576 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEEETIADAG-GEKGCAYC 576 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccccccccCC-Cccccccc
Confidence 7999999999999999999999999999999899999999999999999999999999987664 33444 67999999
Q ss_pred CCCCcccCCcchHHHHHhhhhccCCCCcccCCCC
Q psy7788 79 GGLGHRITACPKLEAVQTKAASSIGRRDYLNSNQ 112 (115)
Q Consensus 79 gG~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (115)
||+||||++||||++++.|+.|+.+++||+++++
T Consensus 577 gGLGHRItdCPKle~~~~k~~sn~gRkdy~~~~~ 610 (610)
T KOG0341|consen 577 GGLGHRITDCPKLEAQQNKQISNIGRKDYLGSGG 610 (610)
T ss_pred cCCCcccccCchhhhhcchhhhhhccccccCCCC
Confidence 9999999999999999999999999999998763
No 2
>KOG0336|consensus
Probab=99.60 E-value=1.1e-15 Score=125.08 Aligned_cols=65 Identities=26% Similarity=0.445 Sum_probs=61.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhhhhhc
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFL 66 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~~~ 66 (115)
+|.++|.||||||||||+|++|.++||++.. |..++..|+++|..+.|+||+.|..|+..++-..
T Consensus 542 FP~nIeeYVHRvGrtGRaGr~G~sis~lt~~-D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q 606 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRTGRAGRTGTSISFLTRN-DWSMAEELIQILERAEQEVPDELVRMAERYKLKQ 606 (629)
T ss_pred CCccHHHHHHHhcccccCCCCcceEEEEehh-hHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhh
Confidence 6999999999999999999999999999999 9999999999999999999999999999886553
No 3
>KOG0339|consensus
Probab=99.54 E-value=5.9e-15 Score=123.12 Aligned_cols=82 Identities=34% Similarity=0.501 Sum_probs=67.8
Q ss_pred CCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhhhhhc----cCCCCCCCCCC
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFL----DLGGDERGCAY 77 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~~~----~~g~~~~g~~~ 77 (115)
..++|.|+||||||||+|.+|+|+|++|+. |..++..|++.|..+.|.||+.|.+|+......+ +.|++.++..+
T Consensus 546 ardIdththrigrtgRag~kGvayTlvTeK-Da~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~~~~ 624 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEKGVAYTLVTEK-DAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKGTGG 624 (731)
T ss_pred cchhHHHHHHhhhcccccccceeeEEechh-hHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCCCCC
Confidence 358999999999999999999999999999 9999999999999999999999999998765543 22334444445
Q ss_pred CCCCCcc
Q psy7788 78 CGGLGHR 84 (115)
Q Consensus 78 ~gG~G~r 84 (115)
.||+|.|
T Consensus 625 ~gglgyr 631 (731)
T KOG0339|consen 625 GGGLGYR 631 (731)
T ss_pred CCCcccc
Confidence 5566655
No 4
>KOG0335|consensus
Probab=99.53 E-value=6e-15 Score=121.95 Aligned_cols=61 Identities=38% Similarity=0.622 Sum_probs=57.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 62 (115)
||.++++||||||||||+|+.|.|++|+... +..++..|.++|.+++|++|+||.+++.+.
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~-~~~i~~~L~~~l~ea~q~vP~wl~~~~~~~ 474 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSFFNEK-NQNIAKALVEILTEANQEVPQWLSELSRER 474 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEEeccc-cchhHHHHHHHHHHhcccCcHHHHhhhhhc
Confidence 7999999999999999999999999999977 899999999999999999999999976664
No 5
>KOG0331|consensus
Probab=99.51 E-value=1.2e-14 Score=121.40 Aligned_cols=61 Identities=34% Similarity=0.523 Sum_probs=58.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 62 (115)
+|.++|+||||||||||+|++|.|+||++.. +...+..|++.+.+++|.+|+.|..++...
T Consensus 418 fP~~vEdYVHRiGRTGRa~~~G~A~tfft~~-~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 418 FPNNVEDYVHRIGRTGRAGKKGTAITFFTSD-NAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred CCCCHHHHHhhcCccccCCCCceEEEEEeHH-HHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 6999999999999999999999999999999 999999999999999999999999997764
No 6
>PTZ00110 helicase; Provisional
Probab=99.45 E-value=8.1e-14 Score=116.84 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=59.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhhh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETE 63 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 63 (115)
+|.++++||||||||||+|+.|.|++|+++. +..++.+|.++|..+.|+||++|.+|+....
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~-~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGASYTFLTPD-KYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEECcc-hHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 6899999999999999999999999999999 9999999999999999999999999988765
No 7
>KOG0334|consensus
Probab=99.39 E-value=4.7e-13 Score=117.71 Aligned_cols=89 Identities=26% Similarity=0.376 Sum_probs=75.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhhhhhccCCCCCCC-CCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDLGGDERG-CAYCG 79 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~~~~~g~~~~g-~~~~g 79 (115)
+|++.++||||+|||||+|++|.|+||+++. +...+.+|.+.|..+.+.+|..|+.|...+......++..-. .++++
T Consensus 690 ~pnh~edyvhR~gRTgragrkg~AvtFi~p~-q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~ 768 (997)
T KOG0334|consen 690 FPNHYEDYVHRVGRTGRAGRKGAAVTFITPD-QLKYAGDLCKALELSKQPVPKLLQALSERFKAKQKAGGSQVHGGGGFG 768 (997)
T ss_pred cchhHHHHHHHhcccccCCccceeEEEeChH-HhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhhcccccccccCccc
Confidence 5889999999999999999999999999998 999999999999999999999999999988766655533322 23588
Q ss_pred CCCcccCCcch
Q psy7788 80 GLGHRITACPK 90 (115)
Q Consensus 80 G~G~r~~~~~~ 90 (115)
|.|.+|.....
T Consensus 769 G~g~~~~~~~~ 779 (997)
T KOG0334|consen 769 GKGLKFDEVEE 779 (997)
T ss_pred CCcccccHHHH
Confidence 99999854443
No 8
>KOG0333|consensus
Probab=99.33 E-value=4e-13 Score=112.36 Aligned_cols=60 Identities=37% Similarity=0.605 Sum_probs=52.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHH-HhCCCCChHHHHhHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL-EARQRIPPFLAELESE 61 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~-~~~q~vp~~l~~~~~~ 61 (115)
|+.++|+|+||||||||||+.|+||||+|+. |..++.+|+..|. .....+|++|......
T Consensus 594 maksieDYtHRIGRTgRAGk~GtaiSflt~~-dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 594 MAKSIEDYTHRIGRTGRAGKSGTAISFLTPA-DTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred hhhhHHHHHHHhccccccccCceeEEEeccc-hhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 5778999999999999999999999999999 9999999999887 4567889888776544
No 9
>KOG0328|consensus
Probab=99.29 E-value=1.5e-12 Score=102.83 Aligned_cols=57 Identities=26% Similarity=0.486 Sum_probs=53.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~ 58 (115)
||++.|.|+|||||.||+|++|+||.|+..+ |.+.+.+|++++..+..++|..+.++
T Consensus 343 LP~nre~YIHRIGRSGRFGRkGvainFVk~~-d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 343 LPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred CCccHHHHhhhhccccccCCcceEEEEecHH-HHHHHHHHHHHHhhhcccccchhhhc
Confidence 7999999999999999999999999999999 99999999999999999999876654
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.25 E-value=4.2e-12 Score=105.75 Aligned_cols=61 Identities=30% Similarity=0.440 Sum_probs=56.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 62 (115)
+|.++++|+||||||||+|..|.|++|+++. +...+.+|+++|+.+.+.+|++|.++..-.
T Consensus 445 ~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~-~~~~~~~l~~~l~~~~~~vp~~l~~~~~~~ 505 (518)
T PLN00206 445 MPNTIKEYIHQIGRASRMGEKGTAIVFVNEE-DRNLFPELVALLKSSGAAIPRELANSRYLG 505 (518)
T ss_pred CCCCHHHHHHhccccccCCCCeEEEEEEchh-HHHHHHHHHHHHHHcCCCCCHHHHhChhhh
Confidence 6899999999999999999999999999998 899999999999999999999999876443
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.4e-11 Score=102.93 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=47.1
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHh---CCCCChHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA---RQRIPPFLA 56 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~---~q~vp~~l~ 56 (115)
+|.++|+||||||||||+|++|.|++|+++.+|...+..|++.+... .+.+|....
T Consensus 350 ~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 350 LPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred CCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 69999999999999999999999999999854889999999998665 245555433
No 12
>KOG0340|consensus
Probab=99.11 E-value=3.9e-11 Score=96.88 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=46.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIP 52 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp 52 (115)
+|.++++||||+|||+|||+.|.||+|+++. |..++..|++.+.....+.+
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~aiSivt~r-Dv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGMAISIVTQR-DVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcceEEEechh-hHHHHHHHHHHHhccccccc
Confidence 6999999999999999999999999999988 99999999998887765544
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.10 E-value=7.4e-11 Score=96.66 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=43.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEAR 48 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~ 48 (115)
+|.++++||||+|||||+|..|.+++|+++. |...+..|++.+....
T Consensus 322 ~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~-d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 322 LPNVPEDYVHRIGRTGRAAATGEALSLVCVD-EHKLLRDIEKLLKKEI 368 (456)
T ss_pred CCCCHHHhhhhccccccCCCCeeEEEEecHH-HHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999999999 9999999999887654
No 14
>KOG0330|consensus
Probab=99.06 E-value=1.3e-10 Score=94.74 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=45.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR 50 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~ 50 (115)
+|.+..+||||+|||||+|++|++|+|++.- |...+..|+..+.....+
T Consensus 377 iP~~skDYIHRvGRtaRaGrsG~~ItlVtqy-Dve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAGRSGKAITLVTQY-DVELVQRIEHALGKKLPE 425 (476)
T ss_pred CCCcHHHHHHHcccccccCCCcceEEEEehh-hhHHHHHHHHHHhcCCCc
Confidence 6999999999999999999999999999998 999999999999887655
No 15
>KOG0326|consensus
Probab=99.03 E-value=9.9e-11 Score=93.91 Aligned_cols=54 Identities=30% Similarity=0.417 Sum_probs=51.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFL 55 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l 55 (115)
+|.++|+|+|||||.||+|.-|+||+|++.+ |...+..|++-|...+.++|+.+
T Consensus 399 fpk~aEtYLHRIGRsGRFGhlGlAInLitye-drf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 399 FPKNAETYLHRIGRSGRFGHLGLAINLITYE-DRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred CCCCHHHHHHHccCCccCCCcceEEEEEehh-hhhhHHHHHHHhccccccCCCcC
Confidence 6899999999999999999999999999999 99999999999999999999754
No 16
>KOG0344|consensus
Probab=99.02 E-value=2e-10 Score=96.77 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=56.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 61 (115)
+|.+.-+||||||||||+|+.|.||||++.. |...+..|++.+..+.-+||+|+..|..-
T Consensus 465 ~p~s~~syihrIGRtgRag~~g~Aitfytd~-d~~~ir~iae~~~~sG~evpe~~m~~~k~ 524 (593)
T KOG0344|consen 465 FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQ-DMPRIRSIAEVMEQSGCEVPEKIMGIKKL 524 (593)
T ss_pred CCchhHHHHHHhhccCCCCCCcceEEEeccc-cchhhhhHHHHHHHcCCcchHHHHhhhhh
Confidence 5888899999999999999999999999998 99999999999999999999999888753
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.95 E-value=9.1e-10 Score=89.12 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRI 51 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~v 51 (115)
+|.++++|+||+|||||+|+.|.||+|+++. |...+..|++.+.......
T Consensus 332 ~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~-~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 332 LPDDCEDYVHRIGRTGRAGASGHSISLACEE-YALNLPAIETYIGHSIPVS 381 (423)
T ss_pred CCCchhheEeccccccCCCCCeeEEEEeCHH-HHHHHHHHHHHhCCCCCCc
Confidence 6899999999999999999999999999998 8888888988887665443
No 18
>KOG0346|consensus
Probab=98.95 E-value=5.4e-10 Score=92.35 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=41.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 47 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~ 47 (115)
||.+++.||||||||||++++|.|+||+.|. +......|+.++...
T Consensus 380 ~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~-e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 380 FPETVTSYIHRVGRTARGNNKGTALSFVSPK-EEFGKESLESILKDE 425 (569)
T ss_pred CCCchHHHHHhccccccCCCCCceEEEecch-HHhhhhHHHHHHhhH
Confidence 7999999999999999999999999999999 777777888877663
No 19
>KOG0327|consensus
Probab=98.95 E-value=2.3e-10 Score=92.51 Aligned_cols=57 Identities=26% Similarity=0.494 Sum_probs=53.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~ 58 (115)
+|...++|+||+||+||.|++|++++|++.. |.+.++++++++.....++|..+.++
T Consensus 340 lP~~~~~yihR~gr~gr~grkg~~in~v~~~-d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 340 LPARKENYIHRIGRAGRFGRKGVAINFVTEE-DVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred cccchhhhhhhcccccccCCCceeeeeehHh-hHHHHHhHHHhcCCcceecccchhhc
Confidence 6899999999999999999999999999999 99999999999999999999876554
No 20
>KOG0338|consensus
Probab=98.93 E-value=3.4e-10 Score=94.96 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=40.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLL 44 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l 44 (115)
||.+++.||||||||+|||+.|.++||+... |+++++.|.+.-
T Consensus 503 mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~-dRkllK~iik~~ 545 (691)
T KOG0338|consen 503 MPKTIEHYLHRVGRTARAGRAGRSVTLVGES-DRKLLKEIIKSS 545 (691)
T ss_pred CchhHHHHHHHhhhhhhcccCcceEEEeccc-cHHHHHHHHhhh
Confidence 7999999999999999999999999999999 999999988873
No 21
>KOG0332|consensus
Probab=98.90 E-value=1e-09 Score=89.28 Aligned_cols=57 Identities=32% Similarity=0.457 Sum_probs=45.9
Q ss_pred CCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCC-CChHHHHhH
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR-IPPFLAELE 59 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~-vp~~l~~~~ 59 (115)
.|.|+|+||||||||+|++|+||.|+....+..++..|++++...... .|..+.++.
T Consensus 415 pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~e 472 (477)
T KOG0332|consen 415 PDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDELE 472 (477)
T ss_pred CCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHHH
Confidence 368999999999999999999999999886777888999999766544 455555443
No 22
>KOG0342|consensus
Probab=98.86 E-value=9.2e-10 Score=91.55 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=39.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHL 43 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~ 43 (115)
+|+++++||||||||||.|++|.|+.|+.|. |..++..|+++
T Consensus 407 ~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~-El~Flr~LK~l 448 (543)
T KOG0342|consen 407 PPSDPEQYIHRVGRTAREGKEGKALLLLAPW-ELGFLRYLKKL 448 (543)
T ss_pred CCCCHHHHHHHhccccccCCCceEEEEeChh-HHHHHHHHhhC
Confidence 5899999999999999999999999999999 99999988854
No 23
>KOG0350|consensus
Probab=98.74 E-value=5.8e-09 Score=87.29 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=41.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHH----hCCCCChH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE----ARQRIPPF 54 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~----~~q~vp~~ 54 (115)
+|.+..+||||+|||||||..|.|+|++... +.+.+.++.+.... ..+.+|..
T Consensus 510 ~P~~~ktyVHR~GRTARAgq~G~a~tll~~~-~~r~F~klL~~~~~~d~~~i~~~e~~ 566 (620)
T KOG0350|consen 510 PPASDKTYVHRAGRTARAGQDGYAITLLDKH-EKRLFSKLLKKTNLWDGVEIQPIEYI 566 (620)
T ss_pred CCchhhHHHHhhcccccccCCceEEEeeccc-cchHHHHHHHHhcccCCcceeecCch
Confidence 5889999999999999999999999999999 66666655554432 33555543
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.72 E-value=6.8e-09 Score=84.87 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=42.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQ 49 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q 49 (115)
+|.++++|+||+|||||+|+.|.|++|+++. |...+..|++.+.....
T Consensus 319 ~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~-e~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 319 LARDPEVHVHRIGRTGRAGSKGLALSLVAPE-EMQRANAIEDYLGRKLN 366 (460)
T ss_pred CCCCHhHhhhhcccccCCCCcceEEEEEchh-HHHHHHHHHHHhCCCCc
Confidence 6899999999999999999999999999999 88888888888765443
No 25
>KOG0329|consensus
Probab=98.69 E-value=4.3e-09 Score=82.66 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=50.0
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
||++.++|+||++|+||.|.+|.||||++..++..++.++.......+.++|+.
T Consensus 325 mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 325 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 799999999999999999999999999998878889999999888888888876
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.68 E-value=8e-09 Score=88.41 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=42.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQ 49 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q 49 (115)
+|.++++|+||+|||||+|+.|.|++|+++. |...+..|++.++....
T Consensus 322 ~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~-e~~~l~~ie~~~~~~i~ 369 (629)
T PRK11634 322 IPMDSESYVHRIGRTGRAGRAGRALLFVENR-ERRLLRNIERTMKLTIP 369 (629)
T ss_pred CCCCHHHHHHHhccccCCCCcceEEEEechH-HHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999999999998 88888888887665543
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.66 E-value=1.2e-08 Score=86.41 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=42.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEAR 48 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~ 48 (115)
+|.++++|+||||||||+|+.|.||+|+++. +...+.+|++.+....
T Consensus 334 ~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~i~~~~~~~~ 380 (572)
T PRK04537 334 LPFDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPDIEAYIEQKI 380 (572)
T ss_pred CCCCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHHHHHHHcCCC
Confidence 5889999999999999999999999999998 8888889988876544
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.63 E-value=1.7e-08 Score=81.75 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=42.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEAR 48 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~ 48 (115)
+|.+.++|+||+|||||+|..|.|++|++.. |...+..|++++....
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~-d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAH-DHLLLGKIERYIEEPL 368 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHH-HHHHHHHHHHHHhccc
Confidence 5889999999999999999999999999988 8888999988776543
No 29
>KOG0348|consensus
Probab=98.58 E-value=1.8e-08 Score=85.07 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHL 43 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~ 43 (115)
.|.++++||||||||+|+|.+|-++.|+.|. |...+..|.+.
T Consensus 524 ~P~s~adylHRvGRTARaG~kG~alLfL~P~-Eaey~~~l~~~ 565 (708)
T KOG0348|consen 524 PPFSTADYLHRVGRTARAGEKGEALLFLLPS-EAEYVNYLKKH 565 (708)
T ss_pred CCCCHHHHHHHhhhhhhccCCCceEEEeccc-HHHHHHHHHhh
Confidence 3788999999999999999999999999999 77777666554
No 30
>PTZ00424 helicase 45; Provisional
Probab=98.58 E-value=3.7e-08 Score=78.46 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=47.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
+|.++.+|+||+||+||.|+.|.+++|+++. +...+..+++.+....+++|+.
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRKGVAINFVTPD-DIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred CCCCHHHEeecccccccCCCCceEEEEEcHH-HHHHHHHHHHHHCCcccccCcc
Confidence 5888999999999999999999999999998 8889999999888777776654
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.56 E-value=3.2e-08 Score=81.38 Aligned_cols=52 Identities=29% Similarity=0.523 Sum_probs=45.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhC-CCCCh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEAR-QRIPP 53 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~-q~vp~ 53 (115)
+|.++++|+||+||+||.|..|.+++|+++. |...+..+++++.... .++|+
T Consensus 412 ~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T PRK01297 412 LPEDPDDYVHRIGRTGRAGASGVSISFAGED-DAFQLPEIEELLGRKISCEMPP 464 (475)
T ss_pred CCCCHHHHHHhhCccCCCCCCceEEEEecHH-HHHHHHHHHHHhCCCCcccCCc
Confidence 5889999999999999999999999999988 8899999999987765 34443
No 32
>KOG0349|consensus
Probab=98.52 E-value=2.4e-08 Score=83.05 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=74.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCc-------------------------------chHHHHHHHHHHHHhCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSN-------------------------------DESVLLDLKHLLLEARQ 49 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~-------------------------------d~~~~~~l~~~l~~~~q 49 (115)
||++..+|||||||.||+-+.|+||+++.... |..++..|+..|+..+|
T Consensus 585 lpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~ 664 (725)
T KOG0349|consen 585 LPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQ 664 (725)
T ss_pred cCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceee
Confidence 69999999999999999999999999985331 23466678888888887
Q ss_pred CCChHHHHhHHhhhhhccCCCC--CCCCCCCCCCCcccCCcchHHHHHhhhhccCCCCcc
Q psy7788 50 RIPPFLAELESETEKFLDLGGD--ERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDY 107 (115)
Q Consensus 50 ~vp~~l~~~~~~~~~~~~~g~~--~~g~~~~gG~G~r~~~~~~~~~~~~~~~~~~~~~~~ 107 (115)
.|.+.+.--..++..+..+|.. ..|++|-+.--.-..++.+|.+.+...+|.|.+|-|
T Consensus 665 qv~~~~~vpv~~fdgkv~ygqk~~~~g~~y~~hv~~l~ptv~~l~~le~~sqs~fl~~~~ 724 (725)
T KOG0349|consen 665 QVDKTMDVPVNDFDGKVVYGQKNLRTGSGYEDHVEQLVPTVRKLTELELQSQSLFLKRLK 724 (725)
T ss_pred eeCCCCCCcccccCCeEEecccccccCCCccchHHHhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 7776655555555555444421 123333333334455667888888888888887755
No 33
>KOG0347|consensus
Probab=98.42 E-value=2.2e-07 Score=78.91 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 47 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~ 47 (115)
+|.+.|.||||.|||+||++.|+.+.|+.|. +...+..|.+-|+..
T Consensus 540 VPrtseiYVHRSGRTARA~~~Gvsvml~~P~-e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANSEGVSVMLCGPQ-EVGPLKKLCKTLKKK 585 (731)
T ss_pred cCCccceeEecccccccccCCCeEEEEeChH-HhHHHHHHHHHHhhc
Confidence 6999999999999999999999999999999 777777777766544
No 34
>KOG0345|consensus
Probab=98.40 E-value=1.4e-07 Score=78.64 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=32.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLL 38 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~ 38 (115)
.|.+++.+|||+|||||+|+.|.||.|+.+. |...+.
T Consensus 334 pP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~-E~aYve 370 (567)
T KOG0345|consen 334 PPKDPSSFVHRCGRTARAGREGNAIVFLNPR-EEAYVE 370 (567)
T ss_pred CCCChhHHHhhcchhhhccCccceEEEeccc-HHHHHH
Confidence 5899999999999999999999999999998 655443
No 35
>KOG0343|consensus
Probab=98.35 E-value=1.6e-07 Score=79.84 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=38.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHL 43 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~ 43 (115)
.|.++++||||+|||+|....|.++.+++|.+++.++..|++.
T Consensus 392 CPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 392 CPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred CchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 4899999999999999999999999999999557788777765
No 36
>KOG4284|consensus
Probab=98.31 E-value=2.7e-07 Score=79.69 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=33.0
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDL 40 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l 40 (115)
.|.|-++|+|||||+||+|.+|+|+||+....+..-+..+
T Consensus 349 ~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 349 APADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred CCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 4889999999999999999999999999987443443333
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.15 E-value=7.7e-07 Score=77.57 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC-cchHHHHHHHHHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS-NDESVLLDLKHLLLEA 47 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~-~d~~~~~~l~~~l~~~ 47 (115)
+|.++++|+||+|||||+|+.|.+++|++.. .|...+..++++++..
T Consensus 356 ~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 356 FPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred CCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 6899999999999999999999999998732 1555666666666543
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=1.1e-06 Score=72.47 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=35.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKH 42 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~ 42 (115)
+|.++++|+||+||+||.|..|.+++|+++. |...+..+..
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~-d~~~~~~~~~ 343 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLFYAPA-DINRLRRLLM 343 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEEechh-HHHHHHHHHh
Confidence 6899999999999999999999999999998 7766655543
No 39
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.95 E-value=4.5e-06 Score=71.87 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=42.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC--------cchHHHHHHHHHHHHhCCCCChHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS--------NDESVLLDLKHLLLEARQRIPPFL 55 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~--------~d~~~~~~l~~~l~~~~q~vp~~l 55 (115)
+|.+.++||||+|||||. ..|.+++|++.. .|...+..|+..++.....+|...
T Consensus 528 ~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 528 FLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 477889999999999997 789999999853 145566677777777777777654
No 40
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.94 E-value=5.2e-06 Score=71.74 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcch
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDE 34 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~ 34 (115)
+|.+.+.|+||+|||||+|+.|.+++|++.+ |.
T Consensus 556 ~P~s~r~y~hr~GRTGRqG~~G~s~~~is~e-D~ 588 (656)
T PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLE-DD 588 (656)
T ss_pred CCCCHHHHHHhcccccCCCCCeEEEEEechh-HH
Confidence 5899999999999999999999999999987 54
No 41
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.91 E-value=4.5e-06 Score=75.73 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=34.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLK 41 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~ 41 (115)
||.++|+|+||+|||||.|..+.||+|++.. |...+..+.
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~cILlys~~-D~~~~~~lI 796 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSCVLYYSYS-DYIRVKHMI 796 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceEEEEecHH-HHHHHHHHH
Confidence 6999999999999999999999999999887 665554443
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.87 E-value=4.9e-06 Score=70.90 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDL 40 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l 40 (115)
+|.++++|+||+||+||.|..|.+++|+++. |...+..+
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~-d~~~~~~~ 351 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPA-DMAWLRRC 351 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEEEEeCHH-HHHHHHHH
Confidence 6899999999999999999999999999988 76554443
No 43
>KOG0337|consensus
Probab=97.85 E-value=1.1e-05 Score=67.01 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=39.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 45 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~ 45 (115)
+|.+...||||+||++|+|+.|.+++|+++. +...+.+|.-.+.
T Consensus 338 ~p~~~klFvhRVgr~aragrtg~aYs~V~~~-~~~yl~DL~lflg 381 (529)
T KOG0337|consen 338 FPPDDKLFVHRVGRVARAGRTGRAYSLVAST-DDPYLLDLQLFLG 381 (529)
T ss_pred CCCCCceEEEEecchhhccccceEEEEEecc-cchhhhhhhhhcC
Confidence 5888999999999999999999999999999 8888888877654
No 44
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.81 E-value=6.4e-06 Score=72.47 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=29.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+|.+.+.|+||+|||||.|..|.+++|++..
T Consensus 511 ~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 511 RMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred CCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 5899999999999999999999999999987
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.55 E-value=3.4e-05 Score=65.27 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDL 40 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l 40 (115)
+|.++++|+||+||+||.|..+.++.|+++. |...+..+
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~-d~~~~~~~ 339 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDGLPAEAILLYSPA-DIALLKRR 339 (591)
T ss_pred CCCCHHHHhhhhccccCCCCCceEEEecCHH-HHHHHHHH
Confidence 5899999999999999999999999998887 66554443
No 46
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.52 E-value=5.2e-05 Score=65.57 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=33.6
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHL 43 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~ 43 (115)
+|.+.++||||||||||. ..|.+++|+... +..+...|...
T Consensus 524 ~p~~~~~~iqriGRagR~-~~G~vi~~~~~~-~~~~~~ai~~~ 564 (655)
T TIGR00631 524 FLRSERSLIQTIGRAARN-VNGKVIMYADKI-TDSMQKAIEET 564 (655)
T ss_pred CCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC-CHHHHHHHHHH
Confidence 477889999999999998 689999999987 66666555554
No 47
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.26 E-value=0.00017 Score=64.79 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHH----HHHHHHHHHhC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVL----LDLKHLLLEAR 48 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~----~~l~~~l~~~~ 48 (115)
.|.+...|+||+|||||.|..|.+++|++.. |.-+. ..|.+++....
T Consensus 681 rhes~Rid~Ql~GRtGRqGdpGsS~ffvSle-D~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 681 RHESRRIDRQLRGRAGRQGDPGESVFYVSLE-DELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred CCchHHHHHHHhhhhhcCCCCcceEEEechh-HHHHHhhCcHHHHHHHHHcC
Confidence 3667788999999999999999999999988 44321 13555554433
No 48
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.12 E-value=0.00029 Score=61.83 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcch
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDE 34 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~ 34 (115)
+|.+.+.|.||+|||||.|..|.++.|++.. |.
T Consensus 487 ~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e-D~ 519 (745)
T TIGR00963 487 RHESRRIDNQLRGRSGRQGDPGSSRFFLSLE-DN 519 (745)
T ss_pred CCCcHHHHHHHhccccCCCCCcceEEEEecc-HH
Confidence 5889999999999999999999999999988 54
No 49
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.97 E-value=0.00028 Score=62.10 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=26.4
Q ss_pred CCCcccceeeccccccCCCCcceEEeecCCcch
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGLATTFINKSNDE 34 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~ 34 (115)
|...++ +||+|||||+|+.|.+++|++.. |.
T Consensus 509 ps~rid-~qr~GRtGRqG~~G~s~~~is~e-D~ 539 (762)
T TIGR03714 509 ENSRVD-LQLRGRSGRQGDPGSSQFFVSLE-DD 539 (762)
T ss_pred CCcHHH-HHhhhcccCCCCceeEEEEEccc-hh
Confidence 555555 99999999999999999999987 44
No 50
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=96.92 E-value=0.00032 Score=61.97 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcch
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDE 34 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~ 34 (115)
+|.+.+.|+|++|||||.|..|.+..|++.+ |.
T Consensus 523 ~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle-D~ 555 (796)
T PRK12906 523 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLE-DD 555 (796)
T ss_pred cCCcHHHHHHHhhhhccCCCCcceEEEEecc-ch
Confidence 5889999999999999999999999999988 43
No 51
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=96.91 E-value=0.00066 Score=61.13 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=32.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE 46 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~ 46 (115)
+|.+++.|+||||||+|.|.++.+..++... +...-..|...+..
T Consensus 573 lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~-~~t~~e~i~~~~~~ 617 (956)
T PRK04914 573 LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL-EGTAQERLFRWYHE 617 (956)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEEccC-CCCHHHHHHHHHhh
Confidence 6999999999999999999998776665444 33344444444443
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=96.87 E-value=0.00037 Score=60.64 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=25.2
Q ss_pred CcccceeeccccccCCCCcceEEeecCC
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+.++|+||+|||||+ +.|.|+.|+++.
T Consensus 488 Skasa~QRaGRAGR~-~~G~c~rLyt~~ 514 (675)
T PHA02653 488 SKSMRTQRKGRVGRV-SPGTYVYFYDLD 514 (675)
T ss_pred CHHHHHHhccCcCCC-CCCeEEEEECHH
Confidence 678999999999999 899999999987
No 53
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.00077 Score=57.89 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHL 43 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~ 43 (115)
+|.++|+|+|-+||+||.|..-.|+.|+.+. |..+...+.+.
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~aill~~~~-D~~~~~~~i~~ 348 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAEAILLYSPE-DIRWQRYLIEQ 348 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcceEEEeeccc-cHHHHHHHHHh
Confidence 6999999999999999999999999999999 87766655554
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=96.48 E-value=0.00043 Score=54.50 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCCcccceeeccccccCCCCc
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTG 22 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G 22 (115)
|..+++|+||+||+||.|+..
T Consensus 303 ~~~~~~~iqr~GR~gR~g~~~ 323 (358)
T TIGR01587 303 LAPIDSLIQRLGRLHRYGRKN 323 (358)
T ss_pred CCCHHHHHHHhccccCCCCCC
Confidence 345789999999999998764
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.26 E-value=0.0012 Score=58.69 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.1
Q ss_pred cccceeeccccccCCCC-cceEEeecC
Q psy7788 5 MNTMFPMIGRTGRSGKT-GLATTFINK 30 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~-G~aitf~~~ 30 (115)
+++||||+|||||+|+. +.+++|++.
T Consensus 364 ~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 364 FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 68999999999999996 555888865
No 56
>PRK02362 ski2-like helicase; Provisional
Probab=96.05 E-value=0.0031 Score=54.90 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.4
Q ss_pred CCCcccceeeccccccCCCC--cceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSGKT--GLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~--G~aitf~~~~ 31 (115)
|-++.+|+||+||+||.|.. |.++.|+...
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 56778999999999999965 8889887654
No 57
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.66 E-value=0.0032 Score=58.32 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.9
Q ss_pred CCcccceeeccccccCCCCcceEEeecCC
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
.+.++|+||+|||||. ..|+||.|+++.
T Consensus 384 iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 384 ISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred cCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 3457899999999999 789999999976
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.63 E-value=0.0058 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.1
Q ss_pred cccceeeccccccCCCCcceEEeecCC
Q psy7788 5 MNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
..+|+||+|||||.++.|.|+.|+.+.
T Consensus 744 ls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 744 LAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 457999999999999999999998654
No 59
>PRK13767 ATP-dependent helicase; Provisional
Probab=95.60 E-value=0.011 Score=52.72 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCCCcccceeeccccccCC-CCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSG-KTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G-~~G~aitf~~~~ 31 (115)
.|.++.+|+||+||+||.. ....++.+++..
T Consensus 367 ~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 367 SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 4889999999999999874 444555555544
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.31 E-value=0.011 Score=55.67 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
.|.++.+|+|||||+||. ..+.+..++.+.
T Consensus 354 sP~sVas~LQRiGRAGR~-~gg~s~gli~p~ 383 (1490)
T PRK09751 354 TPLSVASGLQRIGRAGHQ-VGGVSKGLFFPR 383 (1490)
T ss_pred CCCCHHHHHHHhCCCCCC-CCCccEEEEEeC
Confidence 488999999999999997 455666666655
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.27 E-value=0.004 Score=55.32 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.3
Q ss_pred cccceeeccccccCCCCcceEEeecCC
Q psy7788 5 MNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
-.+|+||+||+||. ..|+|+.|+++.
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 34689999999999 899999999976
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.11 E-value=0.022 Score=48.93 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.1
Q ss_pred cccceeeccccccCCCCcceEEeec
Q psy7788 5 MNTMFPMIGRTGRSGKTGLATTFIN 29 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~G~aitf~~ 29 (115)
...|.||+||+||.|+.|.|+.++.
T Consensus 540 ls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 540 LSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHHHHhhhcccCCCCcEEEEEEC
Confidence 3455669999999999999999984
No 63
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.74 E-value=0.03 Score=48.68 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=21.9
Q ss_pred cccceeeccccccCCCCcceEEeecC
Q psy7788 5 MNTMFPMIGRTGRSGKTGLATTFINK 30 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~G~aitf~~~ 30 (115)
...|+||+||+||.|..|.|+.|+..
T Consensus 563 ls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 563 LAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred HHHHHHHhhcccCCCCceEEEEEECC
Confidence 34556699999999999999999963
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=94.60 E-value=0.01 Score=52.80 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.9
Q ss_pred CcccceeeccccccCCCCcceEEeecCC
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+-++|+||.||+||. ..|.|+.|+++.
T Consensus 313 Skasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 313 SQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred chhhhhhhccccCCC-CCcEEEEecCHH
Confidence 346899999999999 699999999976
No 65
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.49 E-value=0.015 Score=53.54 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.1
Q ss_pred CcccceeeccccccCCCCcceEEeecC
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFINK 30 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~~ 30 (115)
+..+|+||+|||||.++.|.|+.+..+
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 346799999999999999999977644
No 66
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.48 E-value=0.0086 Score=55.56 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.4
Q ss_pred CcccceeeccccccCCCCcceEEeecCC
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+.++|+||.||+||.+ .|+|+.|+++.
T Consensus 378 Skasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 378 SQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred CHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 4579999999999998 99999999876
No 67
>PRK01172 ski2-like helicase; Provisional
Probab=94.42 E-value=0.013 Score=50.54 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCcccceeeccccccCCC--CcceEEeecCC
Q psy7788 3 QMMNTMFPMIGRTGRSGK--TGLATTFINKS 31 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~--~G~aitf~~~~ 31 (115)
-++.+|.||+||+||.|. .|.++.|+...
T Consensus 348 ~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 348 LSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred CCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 355678999999999995 57777776654
No 68
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.75 E-value=0.054 Score=47.82 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=33.3
Q ss_pred CCcccceeeccccccCCCCcce-------EEeecCCc-chHHHHHHHHHHHHh
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGLA-------TTFINKSN-DESVLLDLKHLLLEA 47 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~a-------itf~~~~~-d~~~~~~l~~~l~~~ 47 (115)
.+...|+||+||++|.+..|.+ ++|+++.. |......=..+|.++
T Consensus 572 gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 572 GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred CCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 3788999999999999988876 89998763 444555555555443
No 69
>PRK00254 ski2-like helicase; Provisional
Probab=92.85 E-value=0.058 Score=46.98 Aligned_cols=27 Identities=26% Similarity=0.419 Sum_probs=22.9
Q ss_pred cccceeeccccccCC--CCcceEEeecCC
Q psy7788 5 MNTMFPMIGRTGRSG--KTGLATTFINKS 31 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G--~~G~aitf~~~~ 31 (115)
+.+|+||+||+||.| ..|.++.|++..
T Consensus 360 ~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 360 VLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 458999999999975 779999998765
No 70
>PRK13766 Hef nuclease; Provisional
Probab=92.65 E-value=0.1 Score=45.54 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.5
Q ss_pred CCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
|.+...|+||+||+||.+. |.++.|++..
T Consensus 451 ~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 451 VPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred CCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 5678899999999999875 7888888765
No 71
>KOG0351|consensus
Probab=92.23 E-value=0.079 Score=48.02 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=34.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLK 41 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~ 41 (115)
||.++|.|.|-+||+||.|.--.+++|+... |...+..+.
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~-D~~~l~~ll 601 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA-DISELRRLL 601 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEecchh-HHHHHHHHH
Confidence 7999999999999999999999999999988 665554443
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=91.21 E-value=0.11 Score=43.34 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=20.7
Q ss_pred CCCcccceeeccccccCCCCcceEEee
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGLATTFI 28 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~aitf~ 28 (115)
|.+...|+|||||++|.+......+++
T Consensus 423 ~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 423 SKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred CcchhhhhhhhhccccCCCCCceEEEE
Confidence 456778999999999998776544444
No 73
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=90.32 E-value=0.28 Score=41.87 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=26.0
Q ss_pred ccceeeccccccCCCCcceEEeecCCcchHHHHH
Q psy7788 6 NTMFPMIGRTGRSGKTGLATTFINKSNDESVLLD 39 (115)
Q Consensus 6 e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~ 39 (115)
--+|||.|||||. +.|.++.|++.. ....+..
T Consensus 457 IR~IQR~GRTGR~-r~Grv~vLvt~g-trdeayy 488 (542)
T COG1111 457 IRSIQRKGRTGRK-RKGRVVVLVTEG-TRDEAYY 488 (542)
T ss_pred HHHHHhhCccccC-CCCeEEEEEecC-chHHHHH
Confidence 3579999999999 999999999988 5544443
No 74
>KOG0950|consensus
Probab=84.95 E-value=0.6 Score=42.52 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=29.8
Q ss_pred CcccceeeccccccCCC--CcceEEeecCCcchHHHHHHHH
Q psy7788 4 MMNTMFPMIGRTGRSGK--TGLATTFINKSNDESVLLDLKH 42 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~--~G~aitf~~~~~d~~~~~~l~~ 42 (115)
+.-+|.+++|||||+|. .|.+|.++.+. |.+.+..+.+
T Consensus 582 ~~~~YkQM~GRAGR~gidT~GdsiLI~k~~-e~~~~~~lv~ 621 (1008)
T KOG0950|consen 582 TRLEYKQMVGRAGRTGIDTLGDSILIIKSS-EKKRVRELVN 621 (1008)
T ss_pred hhhhHHhhhhhhhhcccccCcceEEEeecc-chhHHHHHHh
Confidence 34579999999999974 48899999988 7766665444
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.89 E-value=0.74 Score=40.20 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.2
Q ss_pred ccceeeccccccCCCCcceEEeecCC
Q psy7788 6 NTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 6 e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
..|+|++||+||++..|.++-.-...
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 46899999999999999998544433
No 76
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.40 E-value=1.2 Score=37.57 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.7
Q ss_pred ccceeeccccccCCCCcceEE
Q psy7788 6 NTMFPMIGRTGRSGKTGLATT 26 (115)
Q Consensus 6 e~YVHRIGRTGR~G~~G~ait 26 (115)
..|+|++||+||+++.|.++.
T Consensus 356 ~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 356 QLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred HHHHHHHhccCCCCCCCEEEE
Confidence 468999999999999998883
No 77
>KOG0948|consensus
Probab=74.94 E-value=3.5 Score=37.31 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=25.0
Q ss_pred cccceeeccccccCCCC--cceEEeecCCcchHHHH
Q psy7788 5 MNTMFPMIGRTGRSGKT--GLATTFINKSNDESVLL 38 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~--G~aitf~~~~~d~~~~~ 38 (115)
.-+|||..||+||-|.. |++|.++...-+...++
T Consensus 511 sGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak 546 (1041)
T KOG0948|consen 511 SGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAK 546 (1041)
T ss_pred ccceEEecccccccCCCCCceEEEEecCcCCHHHHH
Confidence 45899999999999955 88888876553444444
No 78
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=71.16 E-value=4.2 Score=23.25 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHhCCCCChHH
Q psy7788 33 DESVLLDLKHLLLEARQRIPPFL 55 (115)
Q Consensus 33 d~~~~~~l~~~l~~~~q~vp~~l 55 (115)
+..+.+.|+++..+..+.+|+||
T Consensus 19 dT~v~r~l~~yY~~k~~~~P~WL 41 (41)
T PF14475_consen 19 DTHVHRVLRKYYTEKGRPFPGWL 41 (41)
T ss_pred hhHHHHHHHHHHHHcCCCCCCcC
Confidence 45677889999999999999986
No 79
>PRK09694 helicase Cas3; Provisional
Probab=70.44 E-value=6.4 Score=35.75 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=15.2
Q ss_pred cccceeeccccccCCCC
Q psy7788 5 MNTMFPMIGRTGRSGKT 21 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~ 21 (115)
++.||||+||++|.+++
T Consensus 649 idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 649 VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHhccCCCCCC
Confidence 67899999999999874
No 80
>KOG0352|consensus
Probab=60.62 E-value=4.9 Score=34.38 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDL 40 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l 40 (115)
+|.++.-|-|-.||+||.|....+-.++... |...+..|
T Consensus 332 ~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~-D~~~i~FL 370 (641)
T KOG0352|consen 332 PSQNLAGYYQESGRAGRDGKRSYCRLYYSRQ-DKNALNFL 370 (641)
T ss_pred chhhhHHHHHhccccccCCCccceeeeeccc-chHHHHHH
Confidence 4678889999999999999999988888877 76655544
No 81
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=56.66 E-value=11 Score=17.50 Aligned_cols=16 Identities=50% Similarity=1.124 Sum_probs=13.2
Q ss_pred CCCCCCCCcccCCcch
Q psy7788 75 CAYCGGLGHRITACPK 90 (115)
Q Consensus 75 ~~~~gG~G~r~~~~~~ 90 (115)
|-.++..||...+||+
T Consensus 3 C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 3 CFNCGEPGHIARDCPK 18 (18)
T ss_dssp CTTTSCSSSCGCTSSS
T ss_pred CcCCCCcCcccccCcc
Confidence 4567889999999985
No 82
>PLN02390 molybdopterin synthase catalytic subunit
Probab=52.69 E-value=24 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=29.7
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHH
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~ 57 (115)
.-+||+|+. ..|..-+.+...++. -...+.....++..-+.++|-|=.+
T Consensus 56 ~i~HR~G~l-~vge~~v~v~v~s~H-R~~Af~A~~~~id~lK~~vPIWKkE 104 (111)
T PLN02390 56 AVAHRLGPV-PVGETSVFVAVSSVH-RADALDACKFLIDELKASVPIWKKE 104 (111)
T ss_pred EEEEeeecc-cCCCEEEEEEEECCC-HHHHHHHHHHHHHHHhhcCCEEEee
Confidence 457999976 445544555555555 4445555666666666788876443
No 83
>PRK09401 reverse gyrase; Reviewed
Probab=48.67 E-value=24 Score=33.15 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCcccceeeccccccCCC----CcceEEeecCCcchHHHHHHHHHHHH
Q psy7788 3 QMMNTMFPMIGRTGRSGK----TGLATTFINKSNDESVLLDLKHLLLE 46 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~----~G~aitf~~~~~d~~~~~~l~~~l~~ 46 (115)
.|+-+|||-.|||.|.=. +|+++.|+ + |..++..|.+.|.-
T Consensus 517 pd~~tYiqasGRtSrl~~gg~t~glsv~l~--d-d~~~~~~l~~~~~~ 561 (1176)
T PRK09401 517 PDVTTYIQASGRTSRLYAGGLTKGLSVLLV--D-DEKLFESLKKKLRW 561 (1176)
T ss_pred cCcchheecccchhcccCCCccceeEEEEe--c-CHHHHHHHHHHHHH
Confidence 367899999999999754 35555554 4 67888888777763
No 84
>KOG0353|consensus
Probab=48.27 E-value=6.9 Score=33.11 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=18.5
Q ss_pred eccccccCCCCcceEEeecCCcchH
Q psy7788 11 MIGRTGRSGKTGLATTFINKSNDES 35 (115)
Q Consensus 11 RIGRTGR~G~~G~aitf~~~~~d~~ 35 (115)
-.||+||.+-+-.+|.++--. |..
T Consensus 447 esgragrd~~~a~cilyy~~~-dif 470 (695)
T KOG0353|consen 447 ESGRAGRDDMKADCILYYGFA-DIF 470 (695)
T ss_pred hccccccCCCcccEEEEechH-HHH
Confidence 678999998888888877655 443
No 85
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=41.30 E-value=45 Score=23.97 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=27.3
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHh
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~ 58 (115)
.-+||+|+. ..|..-+.+....+. -...+.....++..-+.++|-|=.+.
T Consensus 80 ~i~HR~G~l-~~Ge~~v~Vav~s~H-R~~Af~A~~~~id~lK~~vPIWKkE~ 129 (150)
T PRK10678 80 TVIHRVGEL-WPGDEIVFVGVTSAH-RSSAFEAGQFIMDYLKTRAPFWKREA 129 (150)
T ss_pred EEEEeEecc-cCCCEEEEEEEECCC-HHHHHHHHHHHHHHHhhcCCeEEeEE
Confidence 457999977 344444444444444 33344444445555666788774443
No 86
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=40.85 E-value=11 Score=33.33 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCcccceeeccccccCC--CCcceEEeecCC
Q psy7788 3 QMMNTMFPMIGRTGRSG--KTGLATTFINKS 31 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G--~~G~aitf~~~~ 31 (115)
..+++-|||.||.+|-| ..|.++.+....
T Consensus 520 aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 520 APIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred CCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 45788999999999999 567777666544
No 87
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=38.30 E-value=49 Score=22.83 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=28.4
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHH
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLA 56 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~ 56 (115)
.-+||+|+. ..|..-+.+....+. -...+..+..++..-+.++|-|=+
T Consensus 67 ~v~HR~G~l-~vGe~~v~i~v~a~h-R~~af~A~~~~id~lK~~~PiWKk 114 (124)
T cd00756 67 AIIHRVGRL-PPGEAIVLVAVSSPH-RKEAFEACEFLIDRLKHRAPIWKK 114 (124)
T ss_pred EEEEEEccc-CCCCEEEEEEEecCC-HHHHHHHHHHHHHHHHhhCCEEEE
Confidence 357999984 444444444444555 444555566666666667776533
No 88
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=35.87 E-value=62 Score=23.25 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=30.5
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHh
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 61 (115)
.-+||||+- ..|..-+.+....+. -...+..+..++..-+..+|-|=.+....
T Consensus 80 ~i~HriG~l-~~Ge~~v~v~v~s~H-R~~Af~a~~~~id~lK~~aPiWKkE~~~d 132 (149)
T COG0314 80 AIIHRIGEL-KIGEAIVLVGVASAH-RKEAFEACEYIIDRLKHRAPIWKKEHTED 132 (149)
T ss_pred EEEEeeccc-cCCCcEEEEEEeccc-HHHHHHHHHHHHHHHHhhCCceEEEecCC
Confidence 368999976 334443444444454 44445555556666667888775555444
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=34.32 E-value=19 Score=32.70 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCC-CcccceeeccccccCCCCcceEEeec
Q psy7788 1 MSQ-MMNTMFPMIGRTGRSGKTGLATTFIN 29 (115)
Q Consensus 1 lP~-~~e~YVHRIGRTGR~G~~G~aitf~~ 29 (115)
+|. ++-++.+|.||+||.++....+..+-
T Consensus 391 ~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 391 YPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 466 67899999999999997766666554
No 90
>KOG0953|consensus
Probab=33.06 E-value=23 Score=31.16 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=21.7
Q ss_pred ceeeccccccCCCC---cceEEeecCCcchHHHHHHHHHHHH
Q psy7788 8 MFPMIGRTGRSGKT---GLATTFINKSNDESVLLDLKHLLLE 46 (115)
Q Consensus 8 YVHRIGRTGR~G~~---G~aitf~~~~~d~~~~~~l~~~l~~ 46 (115)
-.|-.||+||.|.. |.++||-. ..+..|.+.|+.
T Consensus 451 ikQIAGRAGRf~s~~~~G~vTtl~~-----eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 451 IKQIAGRAGRFGSKYPQGEVTTLHS-----EDLKLLKRILKR 487 (700)
T ss_pred HHHHhhcccccccCCcCceEEEeeH-----hhHHHHHHHHhC
Confidence 34567899998754 88888744 334555555543
No 91
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=31.74 E-value=59 Score=30.64 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=29.2
Q ss_pred CCcccceeeccccccCCCCc--ceEEeecCCcchHHHHHHHHHHH
Q psy7788 3 QMMNTMFPMIGRTGRSGKTG--LATTFINKSNDESVLLDLKHLLL 45 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G--~aitf~~~~~d~~~~~~l~~~l~ 45 (115)
.|+-+|||=.|||.|.=.-| .+++++..+ |..++..|.+.|.
T Consensus 515 pd~~tyiqasgrtsr~~~g~~t~gls~~~~~-~~~~~~~l~~~~~ 558 (1171)
T TIGR01054 515 PDARTYIQASGRTSRLYAGGLTKGLSIVLVD-DPEAFEALKKRLK 558 (1171)
T ss_pred cCccceeEccChhhhcccCCcCCceEEEEec-CHHHHHHHHHHHh
Confidence 46789999999998864332 234444444 6778888888777
No 92
>KOG0354|consensus
Probab=30.77 E-value=45 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.2
Q ss_pred cccceeeccccccCCCCcceEEeecCC
Q psy7788 5 MNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+-..|||.|| ||+- .|.++.+.+..
T Consensus 505 pIrmIQrrGR-gRa~-ns~~vll~t~~ 529 (746)
T KOG0354|consen 505 PIRMVQRRGR-GRAR-NSKCVLLTTGS 529 (746)
T ss_pred HHHHHHHhcc-cccc-CCeEEEEEcch
Confidence 4457899999 9995 46777777744
No 93
>KOG0920|consensus
Probab=28.95 E-value=29 Score=31.98 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.8
Q ss_pred ceeeccccccCCCCcceEEeecCC
Q psy7788 8 MFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 8 YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
=-||.||+||. ..|+|+.+++..
T Consensus 522 a~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 522 AKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hHHhcccccCc-cCCeeEEeechh
Confidence 34788998888 579999999865
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=28.68 E-value=1.6e+02 Score=27.57 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=19.8
Q ss_pred eccccccCCCCcceEEeecCCcch
Q psy7788 11 MIGRTGRSGKTGLATTFINKSNDE 34 (115)
Q Consensus 11 RIGRTGR~G~~G~aitf~~~~~d~ 34 (115)
=.||+||.|..|.+..|++-+ |.
T Consensus 661 l~GRagRQGdpGss~f~lSlE-Dd 683 (970)
T PRK12899 661 LRGRCARLGDPGAAKFFLSFE-DR 683 (970)
T ss_pred HhcccccCCCCCceeEEEEcc-hH
Confidence 359999999999999999977 43
No 95
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=28.20 E-value=39 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCCcccceeeccccccC-CCCcceEEeecC
Q psy7788 2 SQMMNTMFPMIGRTGRS-GKTGLATTFINK 30 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~-G~~G~aitf~~~ 30 (115)
|.++...+|||||.|+- +....++-+...
T Consensus 332 P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cHHHHHHhHhccccccccCCcccEEEEecC
Confidence 66778889999999854 444566655554
No 96
>KOG0923|consensus
Probab=25.96 E-value=34 Score=30.94 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.7
Q ss_pred CcccceeeccccccCCCCcceEEeec
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFIN 29 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~ 29 (115)
+-.+-.||.||+||.| .|.|+-++|
T Consensus 580 SKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred chhhhhhhccccCCCC-CCceEEeec
Confidence 3445567777777776 488998888
No 97
>PRK14701 reverse gyrase; Provisional
Probab=25.84 E-value=89 Score=30.67 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=29.0
Q ss_pred CCcccceeeccccccCCC----CcceEEeecCCcchHHHHHHHHHHH
Q psy7788 3 QMMNTMFPMIGRTGRSGK----TGLATTFINKSNDESVLLDLKHLLL 45 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~----~G~aitf~~~~~d~~~~~~l~~~l~ 45 (115)
.|+-+|||=.|||.|.=. +|+++.| .+ |..++..|.+.|.
T Consensus 494 pd~~tyiqasgrtsrl~~gg~tkgls~~~--~d-~~~~~~~l~~~~~ 537 (1638)
T PRK14701 494 PDVRTYIQASGRTSRLFAGGITKGASVLI--VD-DPEIFNALIRQMR 537 (1638)
T ss_pred cCcccceeccchhhhccCCCcCCceEEEE--ec-CHHHHHHHHHHHh
Confidence 367899999999988643 3555544 44 6778888877776
No 98
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=24.20 E-value=32 Score=18.53 Aligned_cols=19 Identities=42% Similarity=0.910 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCcccCCcch
Q psy7788 72 ERGCAYCGGLGHRITACPK 90 (115)
Q Consensus 72 ~~g~~~~gG~G~r~~~~~~ 90 (115)
..-|--|+-.||-|.+||.
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPT 26 (32)
T ss_pred CCEeecCCCCCccHhHCCC
Confidence 3456678889999999997
No 99
>COG1204 Superfamily II helicase [General function prediction only]
Probab=23.88 E-value=52 Score=29.56 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=20.2
Q ss_pred CCcccceeeccccccCCCC--cceEEeec
Q psy7788 3 QMMNTMFPMIGRTGRSGKT--GLATTFIN 29 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~--G~aitf~~ 29 (115)
-++-+|+|..||+||-|-. |.++.+.+
T Consensus 378 i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 378 IPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred CchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 3566899999999999965 55555553
No 100
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=23.71 E-value=33 Score=13.41 Aligned_cols=6 Identities=50% Similarity=1.137 Sum_probs=4.0
Q ss_pred cCCcch
Q psy7788 85 ITACPK 90 (115)
Q Consensus 85 ~~~~~~ 90 (115)
|.+||.
T Consensus 3 i~nCP~ 8 (9)
T PF00220_consen 3 IRNCPI 8 (9)
T ss_pred cccCCC
Confidence 567874
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=23.66 E-value=80 Score=29.84 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCcccceeeccccccCCCCc--ceEEeecCCcchHHHHHHHHHHH
Q psy7788 3 QMMNTMFPMIGRTGRSGKTG--LATTFINKSNDESVLLDLKHLLL 45 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G--~aitf~~~~~d~~~~~~l~~~l~ 45 (115)
.|+-+|+|=.|||.|.=+-| .++|++..+ |.+++..|.+.|.
T Consensus 527 PD~~TYIQaSGRtSRLyaGglTkGlSvvlvd-d~~~f~~L~krm~ 570 (1187)
T COG1110 527 PDVRTYIQASGRTSRLYAGGLTKGLSVVLVD-DPEVFEGLIKRMS 570 (1187)
T ss_pred cChhhheeccchHhhhhccccccceEEEEec-CHHHHHHHHHHHH
Confidence 36779999999999964433 355566656 7778888888775
No 102
>PF13871 Helicase_C_4: Helicase_C-like
Probab=23.51 E-value=81 Score=24.94 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=31.8
Q ss_pred CCCCcccceeeccccccCCCCcc-eEEeecCCc--chHHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGL-ATTFINKSN--DESVLLDLKHLLL 45 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~-aitf~~~~~--d~~~~~~l~~~l~ 45 (115)
+|-+++.-||..|||=|.+-.-- -+.|++... |.+++..|.+-|.
T Consensus 96 ~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~va~rL~ 143 (278)
T PF13871_consen 96 LPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFASTVARRLE 143 (278)
T ss_pred CCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHHHHHHHh
Confidence 58889999999999999986532 344444331 6777777777664
No 103
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=23.03 E-value=2.1e+02 Score=26.65 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.1
Q ss_pred eeccccccCCCCcceEEeecCC
Q psy7788 10 PMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 10 HRIGRTGR~G~~G~aitf~~~~ 31 (115)
|--||+||.|..|.+-.|++-+
T Consensus 518 QLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 518 QLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred HHhcccccCCCCCcceEEEecc
Confidence 3469999999999999998877
No 104
>KOG4150|consensus
Probab=22.64 E-value=36 Score=30.47 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeec
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFIN 29 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~ 29 (115)
+|-++.++-|..||+||-++..+++-++.
T Consensus 610 FP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 610 FPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred CchhHHHHHHHhccccccCCCceEEEEEe
Confidence 57888899999999999999988876554
No 105
>PRK09019 translation initiation factor Sui1; Validated
Probab=21.98 E-value=2.7e+02 Score=18.98 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=22.4
Q ss_pred ccceeeccccccCCCCcceEEeecCCc-chHHHHHHHHHHH
Q psy7788 6 NTMFPMIGRTGRSGKTGLATTFINKSN-DESVLLDLKHLLL 45 (115)
Q Consensus 6 e~YVHRIGRTGR~G~~G~aitf~~~~~-d~~~~~~l~~~l~ 45 (115)
++=+.||.|. |.|+.|..+|+|.--. +...+..|.+.|+
T Consensus 29 ~~~~vri~~~-r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lK 68 (108)
T PRK09019 29 GDGIVRIQRQ-TSGRKGKGVCLITGLDLDDAELKKLAAELK 68 (108)
T ss_pred cCceEEEEEe-cCCCCCCeEEEEeCCcCCHHHHHHHHHHHH
Confidence 4456677764 4566677888776331 3344555555554
No 106
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=21.68 E-value=1.8e+02 Score=19.29 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=25.7
Q ss_pred cccceeec--cccccCCCCcceEEeecCCcchHHHHHHHHHHHH
Q psy7788 5 MNTMFPMI--GRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE 46 (115)
Q Consensus 5 ~e~YVHRI--GRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~ 46 (115)
+++|++|+ =......-.++.|+|... +...+..|.+.|..
T Consensus 41 p~~~~~~~~~k~SSkGnY~svsI~i~A~--~~EQ~e~ly~eL~~ 82 (90)
T COG2921 41 PGDYTPRVSWKPSSKGNYLSVSITIRAT--NIEQVEALYRELRK 82 (90)
T ss_pred CcccCceeeeccCCCCceEEEEEEEEEC--CHHHHHHHHHHHhh
Confidence 68899999 344444445667766554 46667777666654
No 107
>KOG0947|consensus
Probab=20.84 E-value=55 Score=30.77 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=19.2
Q ss_pred cccceeeccccccCCC--CcceEEeec
Q psy7788 5 MNTMFPMIGRTGRSGK--TGLATTFIN 29 (115)
Q Consensus 5 ~e~YVHRIGRTGR~G~--~G~aitf~~ 29 (115)
+-+|+|..||+||-|- +|..|.++.
T Consensus 695 PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 695 PGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred ChhHHhhhccccccccCcCceEEEEec
Confidence 5689999999999994 466665544
No 108
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=20.74 E-value=2.8e+02 Score=24.89 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.5
Q ss_pred cccccCCCCcceEEeecCCcchHHHHHHHHHHHHhC
Q psy7788 13 GRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEAR 48 (115)
Q Consensus 13 GRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~ 48 (115)
||.||......|+.+..+. .....+.=.+.+.++.
T Consensus 573 GRVGRG~~qSyC~Ll~~~~-~~~~a~~RL~im~~t~ 607 (677)
T COG1200 573 GRVGRGDLQSYCVLLYKPP-LSEVAKQRLKIMRETT 607 (677)
T ss_pred cccCCCCcceEEEEEeCCC-CChhHHHHHHHHHhcC
Confidence 7999999999999888877 4344444444454443
No 109
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=20.65 E-value=1.4e+02 Score=23.22 Aligned_cols=47 Identities=9% Similarity=0.156 Sum_probs=28.0
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHH
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFL 55 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l 55 (115)
.-+||+|+. ..|..-+.+....+. -...+..+..++..-+.++|-|=
T Consensus 213 ~v~Hr~G~l-~vge~~v~v~v~a~h-R~~af~a~~~~id~lK~~~piwK 259 (274)
T PRK14493 213 LLHHRTGVI-EAGEDIVFVVVLAGH-RQEAFRAVSDGIDRLKDEVPIFK 259 (274)
T ss_pred EEEEeeccc-cCCCeEEEEEEecCC-HHHHHHHHHHHHHHHhhcCCeEE
Confidence 347999985 444444444444455 44455566666666667888663
No 110
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.21 E-value=3.2e+02 Score=21.37 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCcceEEeecCCcchHHHHHHHHHHHHhCCCCC-hHHHHhHHhhh
Q psy7788 20 KTGLATTFINKSNDESVLLDLKHLLLEARQRIP-PFLAELESETE 63 (115)
Q Consensus 20 ~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp-~~l~~~~~~~~ 63 (115)
+=|+.++|..++ ....+..+..++....-+++ +.+...+-.+.
T Consensus 184 RFGL~l~F~~~~-q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa 227 (249)
T PF05673_consen 184 RFGLWLSFYPPD-QEEYLAIVRHYAERYGLELDEEELRQEALQWA 227 (249)
T ss_pred hCCcEEEecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 348999999999 77778888888887777787 45656555554
Done!