Query psy7788
Match_columns 115
No_of_seqs 191 out of 1505
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:51:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 99.3 3.1E-13 1.1E-17 107.6 2.2 58 1-58 377-434 (434)
2 2p6n_A ATP-dependent RNA helic 99.2 3.3E-12 1.1E-16 92.5 3.4 60 1-60 131-190 (191)
3 2jgn_A DBX, DDX3, ATP-dependen 99.2 8.2E-12 2.8E-16 89.7 3.0 60 1-61 123-182 (185)
4 2i4i_A ATP-dependent RNA helic 99.0 1.1E-10 3.8E-15 90.4 2.8 61 1-62 353-413 (417)
5 1fuk_A Eukaryotic initiation f 98.9 1.5E-10 5.1E-15 81.0 1.1 56 1-57 107-162 (165)
6 1t5i_A C_terminal domain of A 98.8 3.5E-10 1.2E-14 80.0 -0.1 57 1-57 108-164 (172)
7 2rb4_A ATP-dependent RNA helic 98.8 1E-09 3.5E-14 77.3 0.9 49 3-52 119-167 (175)
8 2hjv_A ATP-dependent RNA helic 98.8 1.5E-09 5.1E-14 75.8 1.7 50 1-51 112-161 (163)
9 3eiq_A Eukaryotic initiation f 98.7 1.9E-09 6.4E-14 83.2 1.1 57 1-58 357-413 (414)
10 3eaq_A Heat resistant RNA depe 98.7 2.4E-09 8.3E-14 78.1 1.4 51 1-52 108-158 (212)
11 3i32_A Heat resistant RNA depe 98.6 9.2E-09 3.2E-13 79.5 2.2 49 1-50 105-153 (300)
12 2j0s_A ATP-dependent RNA helic 98.6 2.8E-09 9.7E-14 82.5 -0.9 53 1-54 353-405 (410)
13 2yjt_D ATP-dependent RNA helic 98.0 7E-09 2.4E-13 72.8 0.0 49 1-50 107-155 (170)
14 1s2m_A Putative ATP-dependent 98.5 1.1E-08 3.9E-13 78.8 0.2 56 1-57 335-390 (400)
15 1fuu_A Yeast initiation factor 98.5 1.8E-08 6E-13 77.1 0.0 57 1-58 336-392 (394)
16 1xti_A Probable ATP-dependent 98.4 2.2E-08 7.4E-13 76.7 -0.4 54 1-54 327-380 (391)
17 3i5x_A ATP-dependent RNA helic 98.4 8.3E-08 2.8E-12 77.8 1.9 45 1-46 419-463 (563)
18 1hv8_A Putative ATP-dependent 98.4 1.7E-07 5.9E-12 70.6 2.9 51 1-52 315-365 (367)
19 3sqw_A ATP-dependent RNA helic 98.4 1.1E-07 3.6E-12 78.0 1.9 44 1-45 368-411 (579)
20 3fmp_B ATP-dependent RNA helic 98.4 5.3E-08 1.8E-12 77.6 0.0 51 3-53 418-468 (479)
21 2whx_A Serine protease/ntpase/ 98.3 1.2E-07 3.9E-12 79.6 1.2 51 2-53 448-502 (618)
22 3fht_A ATP-dependent RNA helic 98.3 1.1E-07 3.9E-12 73.0 0.5 51 3-53 351-401 (412)
23 3oiy_A Reverse gyrase helicase 98.1 4.2E-07 1.4E-11 70.9 1.0 42 1-45 329-376 (414)
24 1tf5_A Preprotein translocase 98.1 3.9E-07 1.3E-11 79.3 0.5 31 1-31 515-545 (844)
25 1yks_A Genome polyprotein [con 98.1 4.1E-07 1.4E-11 72.9 0.3 51 2-53 269-323 (440)
26 3pey_A ATP-dependent RNA helic 98.1 4.4E-07 1.5E-11 69.0 -0.0 49 4-52 329-378 (395)
27 2z0m_A 337AA long hypothetical 98.1 7.1E-07 2.4E-11 66.6 1.0 44 1-46 293-336 (337)
28 3jux_A Protein translocase sub 98.0 1.3E-06 4.6E-11 75.5 1.4 33 1-34 557-589 (822)
29 3fho_A ATP-dependent RNA helic 98.0 8.4E-07 2.9E-11 71.9 -0.2 52 3-54 442-493 (508)
30 2wv9_A Flavivirin protease NS2 97.9 1.3E-06 4.6E-11 74.0 -0.0 51 1-52 502-556 (673)
31 3o8b_A HCV NS3 protease/helica 97.8 1.7E-06 5.9E-11 73.5 -1.1 42 1-45 486-531 (666)
32 1nkt_A Preprotein translocase 97.8 7.9E-06 2.7E-10 71.6 2.9 34 1-35 587-620 (922)
33 2z83_A Helicase/nucleoside tri 97.8 3.1E-06 1.1E-10 68.0 0.2 30 2-31 283-313 (459)
34 2fsf_A Preprotein translocase 97.8 3.5E-06 1.2E-10 73.4 0.6 33 1-34 553-585 (853)
35 2d7d_A Uvrabc system protein B 97.8 7.8E-06 2.7E-10 68.9 2.5 40 1-42 527-566 (661)
36 1oyw_A RECQ helicase, ATP-depe 97.7 5.3E-06 1.8E-10 67.8 0.7 40 1-41 313-352 (523)
37 2jlq_A Serine protease subunit 97.7 4.5E-06 1.6E-10 66.8 0.3 54 2-55 281-337 (451)
38 2v1x_A ATP-dependent DNA helic 97.7 4.7E-06 1.6E-10 69.4 0.0 39 1-40 344-382 (591)
39 4ddu_A Reverse gyrase; topoiso 97.7 1.1E-05 3.8E-10 71.7 1.5 41 4-45 461-503 (1104)
40 1gku_B Reverse gyrase, TOP-RG; 97.6 1.2E-05 4E-10 71.0 0.3 43 3-46 424-468 (1054)
41 3tbk_A RIG-I helicase domain; 97.6 2.6E-05 8.9E-10 61.8 2.2 37 1-40 479-515 (555)
42 1c4o_A DNA nucleotide excision 97.6 2.3E-05 7.9E-10 66.0 2.0 39 2-42 522-560 (664)
43 2ykg_A Probable ATP-dependent 97.5 2.5E-05 8.6E-10 64.6 1.1 48 1-51 488-539 (696)
44 4a2p_A RIG-I, retinoic acid in 97.2 4.9E-05 1.7E-09 60.4 -0.4 29 1-31 480-508 (556)
45 2v6i_A RNA helicase; membrane, 96.9 0.00018 6.2E-09 57.2 0.3 28 2-29 261-289 (431)
46 3l9o_A ATP-dependent RNA helic 96.6 0.00051 1.8E-08 61.1 1.5 33 3-35 567-601 (1108)
47 4a2q_A RIG-I, retinoic acid in 96.6 0.00034 1.1E-08 59.5 -0.2 29 1-31 721-749 (797)
48 3rc3_A ATP-dependent RNA helic 96.5 0.00084 2.9E-08 57.0 1.7 32 2-35 413-447 (677)
49 2xgj_A ATP-dependent RNA helic 96.4 0.0009 3.1E-08 59.0 1.7 36 2-37 468-505 (1010)
50 2zj8_A DNA helicase, putative 96.4 0.00059 2E-08 57.2 0.2 30 2-31 356-387 (720)
51 1wp9_A ATP-dependent RNA helic 96.2 0.00071 2.4E-08 51.8 -0.1 29 2-31 447-475 (494)
52 2xau_A PRE-mRNA-splicing facto 96.2 0.0004 1.4E-08 59.5 -2.0 29 2-31 415-443 (773)
53 1z5z_A Helicase of the SNF2/RA 96.0 0.0041 1.4E-07 46.8 3.2 42 1-42 192-236 (271)
54 2va8_A SSO2462, SKI2-type heli 96.0 0.00093 3.2E-08 55.8 -0.4 30 2-31 377-408 (715)
55 2p6r_A Afuhel308 helicase; pro 96.0 0.00067 2.3E-08 56.7 -1.4 30 2-31 357-388 (702)
56 4a2w_A RIG-I, retinoic acid in 95.8 0.0016 5.3E-08 56.7 0.2 29 1-31 721-749 (936)
57 3dmq_A RNA polymerase-associat 95.8 0.0026 8.9E-08 55.6 1.5 29 1-29 583-611 (968)
58 4a4z_A Antiviral helicase SKI2 95.5 0.0036 1.2E-07 55.1 1.1 27 2-28 461-489 (997)
59 1gm5_A RECG; helicase, replica 95.4 0.0057 1.9E-07 52.7 2.0 28 4-31 670-697 (780)
60 4f92_B U5 small nuclear ribonu 95.1 0.0046 1.6E-07 57.3 0.5 35 2-37 1277-1313(1724)
61 4gl2_A Interferon-induced heli 95.0 0.014 4.8E-07 48.1 3.3 28 1-31 491-518 (699)
62 2oca_A DAR protein, ATP-depend 94.2 0.0087 3E-07 47.6 0.2 29 1-29 425-453 (510)
63 2fwr_A DNA repair protein RAD2 93.1 0.023 7.9E-07 44.7 0.7 31 1-31 421-454 (472)
64 2eyq_A TRCF, transcription-rep 93.0 0.018 6.2E-07 51.3 0.0 28 4-31 895-922 (1151)
65 4f92_B U5 small nuclear ribonu 91.4 0.04 1.4E-06 51.2 0.3 33 2-35 442-476 (1724)
66 3h1t_A Type I site-specific re 90.7 0.043 1.5E-06 44.6 -0.2 20 1-20 526-545 (590)
67 2w00_A HSDR, R.ECOR124I; ATP-b 90.5 0.046 1.6E-06 48.5 -0.1 30 2-31 676-709 (1038)
68 1z63_A Helicase of the SNF2/RA 90.2 0.1 3.6E-06 41.1 1.7 31 1-31 421-453 (500)
69 1z3i_X Similar to RAD54-like; 84.6 0.63 2.2E-05 38.6 3.2 45 1-45 496-543 (644)
70 3mwy_W Chromo domain-containin 64.0 3 0.0001 35.4 2.0 42 2-43 653-697 (800)
71 2omd_A Molybdopterin-convertin 26.6 40 0.0014 23.2 2.4 46 7-54 84-129 (154)
72 2wp4_A Molybdopterin-convertin 24.8 40 0.0014 23.0 2.1 46 7-54 86-131 (147)
73 4ap8_A Molybdopterin synthase 24.4 39 0.0013 22.9 2.0 44 8-53 84-127 (135)
74 2q5w_E Molybdopterin-convertin 23.8 42 0.0014 23.0 2.1 47 7-55 78-124 (149)
75 1fm0_E Molybdopterin convertin 23.7 41 0.0014 23.0 2.0 46 7-54 80-125 (150)
76 3rpf_A Molybdopterin synthase 20.8 50 0.0017 22.6 2.0 48 9-58 79-126 (148)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.32 E-value=3.1e-13 Score=107.64 Aligned_cols=58 Identities=34% Similarity=0.586 Sum_probs=52.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~ 58 (115)
+|.++++|+||||||||+|+.|.|++|+++.++..++.+|+++|..+.|++|+||.+|
T Consensus 377 ~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 377 MPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp CCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred CCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 5889999999999999999999999999976588899999999999999999998764
No 2
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=92.46 Aligned_cols=60 Identities=58% Similarity=0.869 Sum_probs=52.1
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES 60 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~ 60 (115)
+|.++++|+||+|||||.|..|.+++|+++.++...+..|++++....+++|++|.++++
T Consensus 131 ~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 131 MPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp CCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred CCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 588999999999999999999999999998757889999999999999999999988753
No 3
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.18 E-value=8.2e-12 Score=89.71 Aligned_cols=60 Identities=38% Similarity=0.654 Sum_probs=55.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESE 61 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 61 (115)
+|.++++|+||+||+||.|..|.+++|+++. +...+..|++.+....+++|++|.+++..
T Consensus 123 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l~~~a~~ 182 (185)
T 2jgn_A 123 LPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLLVEAKQEVPSWLENMAYE 182 (185)
T ss_dssp CCSSHHHHHHHHTTBCCTTSCEEEEEEECGG-GGGGHHHHHHHHHHTTCCCCHHHHHHHC-
T ss_pred CCCCHHHHHHHccccCCCCCCcEEEEEEchh-hHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 5889999999999999999999999999999 99999999999999999999999998754
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.1e-10 Score=90.39 Aligned_cols=61 Identities=38% Similarity=0.641 Sum_probs=55.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHhHHhh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESET 62 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 62 (115)
+|.++++|+||+||+||.|+.|.+++|+++. |...+..|.+.+....+++|.++.+++.+.
T Consensus 353 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 353 LPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLLVEAKQEVPSWLENMAYEH 413 (417)
T ss_dssp CCSSHHHHHHHHTTBCC--CCEEEEEEECGG-GGGGHHHHHHHHHHTTCCCCHHHHHHHTCS
T ss_pred CCCCHHHHHHhcCccccCCCCceEEEEEccc-cHHHHHHHHHHHHHhcCcCCHHHHHHHHhh
Confidence 4788999999999999999999999999999 999999999999999999999999998764
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.94 E-value=1.5e-10 Score=80.96 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=45.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~ 57 (115)
+|.++++|+||+||+||.|..|.+++|+++. +...+..|++.+....+++|..+.+
T Consensus 107 ~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 107 LPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp CCSSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSSCCCEECCSCCTT
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHccCccccCccHHh
Confidence 5889999999999999999999999999999 8899999999998888888876544
No 6
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.83 E-value=3.5e-10 Score=80.00 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=47.0
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~ 57 (115)
+|.++++|+||+||+||.|..|.+++|+++.++...+..|++.+.....++|.++..
T Consensus 108 ~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (172)
T 1t5i_A 108 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI 164 (172)
T ss_dssp CCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-----
T ss_pred CCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhch
Confidence 588999999999999999999999999998746688899999998888888877543
No 7
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.78 E-value=1e-09 Score=77.33 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=39.6
Q ss_pred CCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCC
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIP 52 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp 52 (115)
.++++|+||+||+||.|+.|.+++|+++. +...+..|++.+....+++|
T Consensus 119 ~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 167 (175)
T 2rb4_A 119 PDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQDHFNSSIKQLN 167 (175)
T ss_dssp CCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHHHHTCCCEEEC
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHHHhcCcccccC
Confidence 78899999999999999999999999999 88888889888877665554
No 8
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.78 E-value=1.5e-09 Score=75.82 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=44.0
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRI 51 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~v 51 (115)
+|.++++|+||+||+||.|..|.+++|+++. +...+..|++.+....+++
T Consensus 112 ~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 112 LPLEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp CCSSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTSCCEEC
T ss_pred CCCCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHHHHCCCcCcc
Confidence 5889999999999999999999999999999 8999999998886654443
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.73 E-value=1.9e-09 Score=83.20 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=42.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~ 58 (115)
+|.++++|+||+||+||.|+.|.+++|+++. +...+..|++++.....++|..+.++
T Consensus 357 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 357 LPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CCSSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCCCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcCCccccChhhhhc
Confidence 4788999999999999999999999999999 99999999999999999999887765
No 10
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.72 E-value=2.4e-09 Score=78.06 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIP 52 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp 52 (115)
+|.+.++|+||+|||||.|+.|.+++|+++. +...+..|++.+......++
T Consensus 108 ~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 108 LPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp CCSSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHSSCCEECC
T ss_pred CCcCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhcCcCeecC
Confidence 5889999999999999999999999999999 99999999998876655443
No 11
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.63 E-value=9.2e-09 Score=79.49 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=38.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR 50 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~ 50 (115)
+|.+.++|+||+|||||+|+.|.+++|+++. +...+..|++.+......
T Consensus 105 ~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~~~~~~~~~ 153 (300)
T 3i32_A 105 MPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRRFKR 153 (300)
T ss_dssp CCSSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHHHHTCCCEE
T ss_pred CCCCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHHHhCCcceE
Confidence 5889999999999999999999999999999 888888888887655443
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.62 E-value=2.8e-09 Score=82.55 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=48.7
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
+|.++++|+||+||+||.|+.|.+++|+++. |...+..|++++.....++|..
T Consensus 353 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 353 LPNNRELYIHRIGRSGRYGRKGVAINFVKND-DIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp CCSSHHHHHHHHTTSSGGGCCEEEEEEEEGG-GHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEecHH-HHHHHHHHHHHhCCCceecccc
Confidence 4788999999999999999999999999999 9999999999999888888754
No 13
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.98 E-value=7e-09 Score=72.80 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=42.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR 50 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~ 50 (115)
+|.++++|+||+||+||.|..|.+++|+++. +...+..|++.+......
T Consensus 107 ~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 107 MPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKVGRYIEEPIKA 155 (170)
Confidence 4788999999999999999999999999998 888888888877665443
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.52 E-value=1.1e-08 Score=78.75 Aligned_cols=56 Identities=30% Similarity=0.433 Sum_probs=50.1
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~ 57 (115)
+|.++++|+||+||+||.|+.|.+++|+++. |...+..|++.+....+++|.++.+
T Consensus 335 ~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 335 FPKTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp CCSSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred CCCCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCCcccccccccc
Confidence 4788999999999999999999999999999 8899999999998888888876544
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.47 E-value=1.8e-08 Score=77.10 Aligned_cols=57 Identities=25% Similarity=0.471 Sum_probs=0.0
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHh
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~ 58 (115)
+|.++++|+||+||+||.|..|.+++|+++. |...+..|++++.....++|..+.++
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ----------------------------------------------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCceEEEEEchh-HHHHHHHHHHHhCCcccccCcchhhh
Confidence 4778999999999999999999999999999 88899999999988888888766544
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.43 E-value=2.2e-08 Score=76.68 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=47.7
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
+|.++.+|+||+||+||.|+.|.+++|+++.++..++..|++.+....+++|..
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 478899999999999999999999999998756678888999888888888865
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.38 E-value=8.3e-08 Score=77.76 Aligned_cols=45 Identities=29% Similarity=0.391 Sum_probs=40.7
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE 46 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~ 46 (115)
+|.++++|+||+|||||+|+.|.+++|+++. |...+..|++....
T Consensus 419 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 419 VPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELEDAKNI 463 (563)
T ss_dssp CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHHHHCC
T ss_pred CCCchhhhhhhcCccccCCCCceEEEEEchh-HHHHHHHHHHHhCC
Confidence 5889999999999999999999999999999 88888888877653
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.35 E-value=1.7e-07 Score=70.60 Aligned_cols=51 Identities=27% Similarity=0.418 Sum_probs=45.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIP 52 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp 52 (115)
+|.++.+|+||+||+||.|+.|.+++|+++. |...+..|++.++....+++
T Consensus 315 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 315 LPQNPESYMHRIGRTGRAGKKGKAISIINRR-EYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp CCSCHHHHHHHSTTTCCSSSCCEEEEEECTT-SHHHHHHHHHHHTCCCCCBC
T ss_pred CCCCHHHhhhcccccccCCCccEEEEEEcHH-HHHHHHHHHHHhCCCCceec
Confidence 4788999999999999999999999999999 99999999998877665553
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.35 E-value=1.1e-07 Score=78.05 Aligned_cols=44 Identities=30% Similarity=0.420 Sum_probs=39.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 45 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~ 45 (115)
+|.++++|+||+|||||+|+.|.+++|+++. |...+..|++...
T Consensus 368 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 368 VPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELEDAKN 411 (579)
T ss_dssp CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHHHHC
T ss_pred CCCCHHHhhhhccccccCCCCceEEEEEccc-HHHHHHHHHHHhC
Confidence 5889999999999999999999999999999 8888888877653
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.35 E-value=5.3e-08 Score=77.59 Aligned_cols=51 Identities=27% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCCh
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 53 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~ 53 (115)
.++++|+||+|||||+|+.|.+++|+++.++...+..|.+.+.....+++.
T Consensus 418 ~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 418 PDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp ---------------------------------------------------
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 367899999999999999999999999885578888888888777666654
No 21
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.31 E-value=1.2e-07 Score=79.60 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=43.1
Q ss_pred CCCcccceeeccccccCCC-CcceEEeec---CCcchHHHHHHHHHHHHhCCCCCh
Q psy7788 2 SQMMNTMFPMIGRTGRSGK-TGLATTFIN---KSNDESVLLDLKHLLLEARQRIPP 53 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~-~G~aitf~~---~~~d~~~~~~l~~~l~~~~q~vp~ 53 (115)
|.+.++|+||+|||||+|. .|.+++|++ +. |...+..|++.+.....++|.
T Consensus 448 P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~-d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 448 PVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN-DEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC-CTTCHHHHHHHHHHTTCCCTT
T ss_pred cCCHHHHHHhccccCCCCCCCCeEEEEccCCchh-hHHHHHHHHhHhccccccCCc
Confidence 7888999999999999965 999999998 66 788888888888776666654
No 22
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.29 E-value=1.1e-07 Score=72.96 Aligned_cols=51 Identities=27% Similarity=0.437 Sum_probs=42.8
Q ss_pred CCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCCh
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 53 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~ 53 (115)
.++++|+||+||+||.|+.|.+++|+++.++...+..|++.+.....+++.
T Consensus 351 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 351 PDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred cchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 356799999999999999999999999874578888999998887777764
No 23
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.14 E-value=4.2e-07 Score=70.87 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=37.5
Q ss_pred CC--CCcccceeeccccccCC----CCcceEEeecCCcchHHHHHHHHHHH
Q psy7788 1 MS--QMMNTMFPMIGRTGRSG----KTGLATTFINKSNDESVLLDLKHLLL 45 (115)
Q Consensus 1 lP--~~~e~YVHRIGRTGR~G----~~G~aitf~~~~~d~~~~~~l~~~l~ 45 (115)
+| .++++|+||+|||||.| +.|.+++|+ . |...+..|++.+.
T Consensus 329 ~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~-~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 329 TPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--E-DEEIFESLKTRLL 376 (414)
T ss_dssp CCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--C-CHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--c-cHHHHHHHHHHhc
Confidence 57 78999999999999998 589999999 4 7888899999888
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.12 E-value=3.9e-07 Score=79.26 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=29.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+|.+.+.|+||+|||||+|+.|.+++|++..
T Consensus 515 ~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~e 545 (844)
T 1tf5_A 515 RHESRRIDNQLRGRSGRQGDPGITQFYLSME 545 (844)
T ss_dssp CCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred CCCCHHHHHhhcCccccCCCCCeEEEEecHH
Confidence 5899999999999999999999999999988
No 25
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.11 E-value=4.1e-07 Score=72.87 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=42.4
Q ss_pred CCCcccceeeccccccC-CCCcceEEee---cCCcchHHHHHHHHHHHHhCCCCCh
Q psy7788 2 SQMMNTMFPMIGRTGRS-GKTGLATTFI---NKSNDESVLLDLKHLLLEARQRIPP 53 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~-G~~G~aitf~---~~~~d~~~~~~l~~~l~~~~q~vp~ 53 (115)
|.++++|+||+|||||. ++.|.|++|+ ++. +...+..++..+..+..++|.
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~-~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSEN-NAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC-CTTBHHHHHHHHHHTTSCCGG
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEeccCChh-hhhhhhhhhHHhccccccccc
Confidence 67888999999999998 7899999996 566 778888888887766666654
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.08 E-value=4.4e-07 Score=69.00 Aligned_cols=49 Identities=31% Similarity=0.501 Sum_probs=39.9
Q ss_pred CcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHH-HhCCCCC
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL-EARQRIP 52 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~-~~~q~vp 52 (115)
++++|+||+||+||.|+.|.+++|+++.++...+..|.+.+. .....+|
T Consensus 329 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 329 DPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp CHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred CHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 789999999999999999999999998746667777877776 4444454
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.07 E-value=7.1e-07 Score=66.57 Aligned_cols=44 Identities=34% Similarity=0.443 Sum_probs=35.7
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE 46 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~ 46 (115)
+|.++++|+||+||+||.|..|.+++|+. . |...+..|++.+..
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~-~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-N-EYWLEKEVKKVSQK 336 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-S-CHHHHHHHC-----
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-C-cHHHHHHHHHHhcc
Confidence 47889999999999999999999999999 6 78888888877653
No 28
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.00 E-value=1.3e-06 Score=75.48 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.9
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcch
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDE 34 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~ 34 (115)
+|.+.+.|+||+|||||+|..|.+++|++.. |.
T Consensus 557 ~Pes~r~y~qriGRTGRqG~~G~a~~fvsle-D~ 589 (822)
T 3jux_A 557 RHESRRIDNQLRGRAGRQGDPGESIFFLSLE-DD 589 (822)
T ss_dssp CCSSHHHHHHHHTTSSCSSCCCEEEEEEETT-SH
T ss_pred CCCCHHHHHHhhCccccCCCCeeEEEEechh-HH
Confidence 5899999999999999999999999999998 63
No 29
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.98 E-value=8.4e-07 Score=71.89 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=36.5
Q ss_pred CCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
.++.+|+||+||+||.|+.|.+++|+++.++...+..|++++....+++|..
T Consensus 442 ~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 442 PDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp -CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred CCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 5788999999999999999999999997657788889999988887777754
No 30
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.92 E-value=1.3e-06 Score=73.96 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=39.9
Q ss_pred CCCCcccceeeccccccC-CCCcceEEee---cCCcchHHHHHHHHHHHHhCCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRS-GKTGLATTFI---NKSNDESVLLDLKHLLLEARQRIP 52 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~-G~~G~aitf~---~~~~d~~~~~~l~~~l~~~~q~vp 52 (115)
+|.++++|+||+|||||. ++.|.|++|+ ++. |...+..++..+.....+++
T Consensus 502 ~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~-d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 502 SAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSED-DTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp EECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCC-CTTBHHHHHHHHHHHTSCBT
T ss_pred CCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChh-HHHHHHHHHHHHhhhhccCC
Confidence 367789999999999999 8999999996 455 77777777777655444444
No 31
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.81 E-value=1.7e-06 Score=73.53 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHH--H--HHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESV--L--LDLKHLLL 45 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~--~--~~l~~~l~ 45 (115)
+|.+.++|+||+||||| ++.|. ++|+++. |... + ..|++.++
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~-e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPG-ERPSGMFDSSVLCECYD 531 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCC-CBCSSBCCHHHHHHHHH
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecc-hhhcccccHHHHHHHhc
Confidence 37788999999999999 99999 9999988 5443 2 44444443
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.81 E-value=7.9e-06 Score=71.59 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.2
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDES 35 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~ 35 (115)
+|.+.+.|+||+|||||+|..|.+++|++.. |.-
T Consensus 587 ~pes~riy~qr~GRTGRqGdpG~s~fflSle-D~l 620 (922)
T 1nkt_A 587 RHESRRIDNQLRGRSGRQGDPGESRFYLSLG-DEL 620 (922)
T ss_dssp CCSSHHHHHHHHHTSSGGGCCEEEEEEEETT-SHH
T ss_pred CCCCHHHHHHHhcccccCCCCeeEEEEechh-HHH
Confidence 5899999999999999999999999999988 553
No 33
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.80 E-value=3.1e-06 Score=68.03 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCcccceeeccccccCCC-CcceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSGK-TGLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~-~G~aitf~~~~ 31 (115)
|.+.++|+||+|||||.|+ .|.+++|+++.
T Consensus 283 p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 283 PITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6778999999999999998 99999999874
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.80 E-value=3.5e-06 Score=73.37 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcch
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDE 34 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~ 34 (115)
+|.+.+.|+||+|||||+|..|.+++|++.. |.
T Consensus 553 ~pes~riy~qr~GRTGRqGd~G~s~~fls~e-D~ 585 (853)
T 2fsf_A 553 RHESRRIDNQLRGRSGRQGDAGSSRFYLSME-DA 585 (853)
T ss_dssp CCSSHHHHHHHHTTSSGGGCCEEEEEEEETT-SG
T ss_pred CCCCHHHHHhhccccccCCCCeeEEEEeccc-HH
Confidence 5899999999999999999999999999988 53
No 35
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.79 E-value=7.8e-06 Score=68.90 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKH 42 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~ 42 (115)
+|.+.++|+||+|||||. ..|.+++|+++. +..+...|.+
T Consensus 527 ~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~-~~~~~~~i~~ 566 (661)
T 2d7d_A 527 FLRSERSLIQTIGRAARN-AEGRVIMYADKI-TKSMEIAINE 566 (661)
T ss_dssp TTTSHHHHHHHHHTTTTS-TTCEEEEECSSC-CHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcccCC-CCCEEEEEEeCC-CHHHHHHHHH
Confidence 388999999999999999 789999999988 6655554443
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.74 E-value=5.3e-06 Score=67.81 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=34.0
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLK 41 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~ 41 (115)
+|.++++|+||+||+||.|..|.++.|+++. |...+..+.
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~-d~~~~~~~~ 352 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPA-DMAWLRRCL 352 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHH-HHHHHHHHH
Confidence 5899999999999999999999999999987 665544433
No 37
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.74 E-value=4.5e-06 Score=66.81 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=36.8
Q ss_pred CCCcccceeeccccccCCC-CcceEEeecCCc--chHHHHHHHHHHHHhCCCCChHH
Q psy7788 2 SQMMNTMFPMIGRTGRSGK-TGLATTFINKSN--DESVLLDLKHLLLEARQRIPPFL 55 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~-~G~aitf~~~~~--d~~~~~~l~~~l~~~~q~vp~~l 55 (115)
|.+.++|+||+|||||.|+ .|.++.|....+ ...+...++..+.....++|.++
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 6788899999999999998 888888864431 11222333445555666777654
No 38
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.72 E-value=4.7e-06 Score=69.38 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=33.5
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDL 40 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l 40 (115)
+|.++++|+||+||+||.|..|.++.|+++. |...+..+
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~-D~~~~~~~ 382 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILYYGFG-DIFRISSM 382 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHH-HHHHHHHH
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEEEChH-HHHHHHHH
Confidence 5899999999999999999999999999887 65544443
No 39
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.66 E-value=1.1e-05 Score=71.66 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=32.9
Q ss_pred CcccceeeccccccCCCCc--ceEEeecCCcchHHHHHHHHHHH
Q psy7788 4 MMNTMFPMIGRTGRSGKTG--LATTFINKSNDESVLLDLKHLLL 45 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G--~aitf~~~~~d~~~~~~l~~~l~ 45 (115)
|+++||||+|||||.++.| .+++|+..+ |..++..|++.++
T Consensus 461 d~~tYihr~GRtgR~~~gg~~~Glsi~~~~-d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 461 DVYTYIQASGRSSRILNGVLVKGVSVIFEE-DEEIFESLKTRLL 503 (1104)
T ss_dssp CHHHHHHHHHTTCCEETTEECCEEEEEECC-CHHHHHHHHHHHH
T ss_pred ChhhhhcccCchhcccCCCcccceEEEEEe-cHHHHHHHHHHHh
Confidence 6789999999999977644 355555556 8899999999887
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.56 E-value=1.2e-05 Score=71.03 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=38.1
Q ss_pred CCcccceeeccccccCCCCcc--eEEeecCCcchHHHHHHHHHHHH
Q psy7788 3 QMMNTMFPMIGRTGRSGKTGL--ATTFINKSNDESVLLDLKHLLLE 46 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G~~G~--aitf~~~~~d~~~~~~l~~~l~~ 46 (115)
.++++|+||+|||||+|+.|. +++|+... |...+..|++.+..
T Consensus 424 ~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 424 PDLRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp ECHHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred CcHHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 478899999999999988874 99999998 88999999998885
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.56 E-value=2.6e-05 Score=61.79 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDL 40 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l 40 (115)
+|.++++|+||+|| ||. +.|.++.|+++. +......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~-~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA-DVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCH-HHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCC-CHHHHHHH
Confidence 58899999999999 999 999999999987 55444434
No 42
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.55 E-value=2.3e-05 Score=66.02 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=32.2
Q ss_pred CCCcccceeeccccccCCCCcceEEeecCCcchHHHHHHHH
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKH 42 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~ 42 (115)
|.+.++|+||+|||||.+ .|.+++|+++. +..+...|.+
T Consensus 522 p~s~~~~iQr~GRagR~~-~G~~i~~~~~~-~~~~~~~i~~ 560 (664)
T 1c4o_A 522 LRSERSLIQTIGRAARNA-RGEVWLYADRV-SEAMQRAIEE 560 (664)
T ss_dssp GGSHHHHHHHHGGGTTST-TCEEEEECSSC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHCccCcCC-CCEEEEEEcCC-CHHHHHHHHH
Confidence 778899999999999995 89999999988 6655554443
No 43
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.47 E-value=2.5e-05 Score=64.55 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=24.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCCcchHHHHHH----HHHHHHhCCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDL----KHLLLEARQRI 51 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l----~~~l~~~~q~v 51 (115)
+|.++++|+||+|| ||. +.|.++.|++.. +......+ ++++.....++
T Consensus 488 ~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~-~~~~~~~~~~~~e~~~~~~~~~~ 539 (696)
T 2ykg_A 488 YVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA-GVIEKEQINMYKEKMMNDSILRL 539 (696)
T ss_dssp CC--CCCC-----------CCCEEEEEESCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhcc-CcC-CCceEEEEecCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999 998 789999888876 65444444 44555444333
No 44
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.17 E-value=4.9e-05 Score=60.44 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=19.3
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+|.++++|+||+|| ||. +.|.++.|+++.
T Consensus 480 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 508 (556)
T 4a2p_A 480 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 508 (556)
T ss_dssp CCSCHHHHHHC----------CCEEEEESCH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCc
Confidence 58899999999999 999 899999999977
No 45
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.86 E-value=0.00018 Score=57.22 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=22.7
Q ss_pred CCCcccceeeccccccCCC-CcceEEeec
Q psy7788 2 SQMMNTMFPMIGRTGRSGK-TGLATTFIN 29 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~-~G~aitf~~ 29 (115)
|.+.++|+||+||+||.|. .|.++.|..
T Consensus 261 p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 261 AITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred cCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 5678899999999999995 566676663
No 46
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.00051 Score=61.06 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=25.5
Q ss_pred CCcccceeeccccccCC--CCcceEEeecCCcchH
Q psy7788 3 QMMNTMFPMIGRTGRSG--KTGLATTFINKSNDES 35 (115)
Q Consensus 3 ~~~e~YVHRIGRTGR~G--~~G~aitf~~~~~d~~ 35 (115)
.++.+|+||+|||||.| ..|.++.++++..+..
T Consensus 567 iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~ 601 (1108)
T 3l9o_A 567 VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQ 601 (1108)
T ss_dssp CCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHH
T ss_pred CCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHH
Confidence 35667999999999999 6788888877663333
No 47
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.56 E-value=0.00034 Score=59.49 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=20.1
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+|.++..|+||+|| ||. +.|.++.|+++.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 58899999999999 999 899999999876
No 48
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.47 E-value=0.00084 Score=56.99 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCcccceeeccccccCCCC---cceEEeecCCcchH
Q psy7788 2 SQMMNTMFPMIGRTGRSGKT---GLATTFINKSNDES 35 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~---G~aitf~~~~~d~~ 35 (115)
|.+.++|+||+||+||.|.. |.++. +++. +..
T Consensus 413 p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~-d~~ 447 (677)
T 3rc3_A 413 PITTSQALQIAGRAGRFSSRFKEGEVTT-MNHE-DLS 447 (677)
T ss_dssp BCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTT-HHH
T ss_pred cCCHHHHHHHhcCCCCCCCCCCCEEEEE-Eecc-hHH
Confidence 67889999999999999976 54443 3444 443
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0009 Score=58.98 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCCcccceeeccccccCCC--CcceEEeecCCcchHHH
Q psy7788 2 SQMMNTMFPMIGRTGRSGK--TGLATTFINKSNDESVL 37 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~--~G~aitf~~~~~d~~~~ 37 (115)
|.++.+|+||+||+||.|. .|.++.|+++..+...+
T Consensus 468 p~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~ 505 (1010)
T 2xgj_A 468 WVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 505 (1010)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHH
T ss_pred cCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHH
Confidence 5678999999999999996 59999999866343333
No 50
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.38 E-value=0.00059 Score=57.22 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.7
Q ss_pred CCCcccceeeccccccCC--CCcceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSG--KTGLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G--~~G~aitf~~~~ 31 (115)
|.++.+|+||+||+||.| ..|.++.|+++.
T Consensus 356 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 356 RIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred cCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 667889999999999998 579999999887
No 51
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.23 E-value=0.00071 Score=51.78 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
|.++.+|+||+||+||.|. |.++.|+++.
T Consensus 447 ~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 447 VPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp CHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred CCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 5567889999999999998 9999999988
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.17 E-value=0.0004 Score=59.52 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=26.5
Q ss_pred CCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
|.+.++|+||+||+||. ..|.|+.|+++.
T Consensus 415 p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 415 PISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp ECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred cCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 67889999999999999 899999999866
No 53
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=96.03 E-value=0.0041 Score=46.79 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=17.2
Q ss_pred CCCCcccceeeccccccCCCCcce--EEeecCCc-chHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLA--TTFINKSN-DESVLLDLKH 42 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~a--itf~~~~~-d~~~~~~l~~ 42 (115)
+|-++..|+||+||++|.|..+.+ +.|++... |+.++..+..
T Consensus 192 ~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 192 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp CCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 477899999999999999988765 66777652 4444444433
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.03 E-value=0.00093 Score=55.82 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCCcccceeeccccccCC--CCcceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSG--KTGLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G--~~G~aitf~~~~ 31 (115)
|.+..+|+||+||+||.| ..|.|+.|+++.
T Consensus 377 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 377 EIPIMEYKQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp --CHHHHHHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEeCCc
Confidence 567889999999999998 579999998876
No 55
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.98 E-value=0.00067 Score=56.71 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.5
Q ss_pred CCCcccceeeccccccCC--CCcceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSG--KTGLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G--~~G~aitf~~~~ 31 (115)
|.++.+|+||+||+||.| ..|.++.|+++.
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 567889999999999998 579999998877
No 56
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.84 E-value=0.0016 Score=56.74 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=19.7
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+|.++.+|+||+|| ||. +.|.++.|++..
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 58899999999999 999 889999999876
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.83 E-value=0.0026 Score=55.65 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=24.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeec
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFIN 29 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~ 29 (115)
+|.+++.|+||+||++|.|..+.++.+..
T Consensus 583 ~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 583 LPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp CCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred CCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 47789999999999999999996665543
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.46 E-value=0.0036 Score=55.08 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCCcccceeeccccccCC--CCcceEEee
Q psy7788 2 SQMMNTMFPMIGRTGRSG--KTGLATTFI 28 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G--~~G~aitf~ 28 (115)
|.++++|+||+||+||.| ..|.++.++
T Consensus 461 ~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 461 ELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp ECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 447889999999999999 556666666
No 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.38 E-value=0.0057 Score=52.69 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=24.2
Q ss_pred CcccceeeccccccCCCCcceEEeecCC
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+...|.||+||+||.|+.|.|+.|+++.
T Consensus 670 ~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 670 GLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 3566778999999999999999998854
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.08 E-value=0.0046 Score=57.34 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCCcccceeeccccccCCC--CcceEEeecCCcchHHH
Q psy7788 2 SQMMNTMFPMIGRTGRSGK--TGLATTFINKSNDESVL 37 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~--~G~aitf~~~~~d~~~~ 37 (115)
|-++.+|+|++||+||.|. .|.|+.|+.+. +....
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~-~~~~~ 1313 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS-KKDFF 1313 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG-GHHHH
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecch-HHHHH
Confidence 4567899999999999997 68899888776 55433
No 61
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.05 E-value=0.014 Score=48.09 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
+|.++++|+||+||+| +.|.+++|+++.
T Consensus 491 ~p~s~~~~~Qr~GRAr---r~g~~~~l~~~~ 518 (699)
T 4gl2_A 491 LVTNEIAMVQARGRAR---ADESTYVLVAHS 518 (699)
T ss_dssp CCCCHHHHHHHHTTSC---SSSCEEEEEEES
T ss_pred CCCCHHHHHHHcCCCC---CCCceEEEEEeC
Confidence 5889999999999943 456788888765
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.24 E-value=0.0087 Score=47.57 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=24.4
Q ss_pred CCCCcccceeeccccccCCCCcceEEeec
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLATTFIN 29 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~aitf~~ 29 (115)
.|.++.+|+||+||+||.|..+..+++++
T Consensus 425 ~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 425 GVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 36788999999999999999886666665
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.06 E-value=0.023 Score=44.65 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCCCcccceeeccccccCCCC---cceEEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKT---GLATTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~---G~aitf~~~~ 31 (115)
.|.++.+|+||+||++|.|.. ...+.|++..
T Consensus 421 ~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 421 GSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 367889999999999999943 3556677654
No 64
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.98 E-value=0.018 Score=51.35 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.7
Q ss_pred CcccceeeccccccCCCCcceEEeecCC
Q psy7788 4 MMNTMFPMIGRTGRSGKTGLATTFINKS 31 (115)
Q Consensus 4 ~~e~YVHRIGRTGR~G~~G~aitf~~~~ 31 (115)
++.+|+||+||+||.|+.|.|+.|+.+.
T Consensus 895 ~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 895 GLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 5678999999999999999999888654
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=91.40 E-value=0.04 Score=51.18 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=26.5
Q ss_pred CCCcccceeeccccccCCC--CcceEEeecCCcchH
Q psy7788 2 SQMMNTMFPMIGRTGRSGK--TGLATTFINKSNDES 35 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~--~G~aitf~~~~~d~~ 35 (115)
|-++.+|+||+||+||.|. .|.++.+.++. +..
T Consensus 442 ~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~-~~~ 476 (1724)
T 4f92_B 442 ELGALDILQMLGRAGRPQYDTKGEGILITSHG-ELQ 476 (1724)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST-TCC
T ss_pred cCCHHHHHHhhhhccCCCCCCccEEEEEecch-hHH
Confidence 3467799999999999884 68999888877 543
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=90.71 E-value=0.043 Score=44.59 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.3
Q ss_pred CCCCcccceeeccccccCCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGK 20 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~ 20 (115)
.|.++..|+|||||++|.+.
T Consensus 526 ~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 526 VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CCCCHHHHHHHHTTSCCCBG
T ss_pred cCCChHHHHHHHhhhcccCc
Confidence 36788999999999999775
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=90.54 E-value=0.046 Score=48.49 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCCcccceeeccccccCCCC----cceEEeecCC
Q psy7788 2 SQMMNTMFPMIGRTGRSGKT----GLATTFINKS 31 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~----G~aitf~~~~ 31 (115)
|.+..+|||+||||+|.+.. |.++.|+...
T Consensus 676 pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~ 709 (1038)
T 2w00_A 676 NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLE 709 (1038)
T ss_dssp CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCH
T ss_pred CCCccceeehhhccCcCCCCCCCcEEEEEccccH
Confidence 66778999999999999864 8899998744
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=90.22 E-value=0.1 Score=41.15 Aligned_cols=31 Identities=16% Similarity=-0.049 Sum_probs=22.1
Q ss_pred CCCCcccceeeccccccCCCCcce--EEeecCC
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTGLA--TTFINKS 31 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G~a--itf~~~~ 31 (115)
+|-++..|+||+||++|.|....+ +.|++..
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 467899999999999999987654 5566655
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=84.64 E-value=0.63 Score=38.62 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=31.4
Q ss_pred CCCCcccceeeccccccCCCCc--ceEEeecCCc-chHHHHHHHHHHH
Q psy7788 1 MSQMMNTMFPMIGRTGRSGKTG--LATTFINKSN-DESVLLDLKHLLL 45 (115)
Q Consensus 1 lP~~~e~YVHRIGRTGR~G~~G--~aitf~~~~~-d~~~~~~l~~~l~ 45 (115)
+|-++..|+|++||+.|.|.+. .++.|++... |++++..+.....
T Consensus 496 ~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~ 543 (644)
T 1z3i_X 496 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKA 543 (644)
T ss_dssp CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHH
Confidence 3668899999999999999765 4566777663 4455555544443
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=64.00 E-value=3 Score=35.38 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCCcccceeeccccccCCCCcc--eEEeecCCc-chHHHHHHHHH
Q psy7788 2 SQMMNTMFPMIGRTGRSGKTGL--ATTFINKSN-DESVLLDLKHL 43 (115)
Q Consensus 2 P~~~e~YVHRIGRTGR~G~~G~--aitf~~~~~-d~~~~~~l~~~ 43 (115)
|-++..++||+||+.|.|.+.. .+.|++... |.+++..+.+.
T Consensus 653 ~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 653 DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 5578899999999999997644 455777652 44454444443
No 71
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=26.63 E-value=40 Score=23.21 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=24.9
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
.-+||+|+. ..|..-+.+....+. -...+.....++..-+.++|-|
T Consensus 84 ~v~HR~G~l-~vGe~iv~VaVss~H-R~~Af~A~~~~iD~lK~~aPiW 129 (154)
T 2omd_A 84 FIHHRLGLV-KIGEPSFLVLAVGGH-REETFKACRYAVDETKKRVPIW 129 (154)
T ss_dssp EEEEECEEE-ETTSCCEEEEEEESS-HHHHHHHHHHHHHHHHHHSCEE
T ss_pred EEEEEEccc-CCCCeEEEEEEeccC-HHHHHHHHHHHHHHHHhhCCEE
Confidence 357999986 444444444444555 3334444444444444466655
No 72
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=24.85 E-value=40 Score=23.03 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=22.7
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
.-+||+|+. ..|..-+.+-...+. -...+.....++..-+.++|-|
T Consensus 86 ~i~HR~G~l-~vGe~~v~VaVss~H-R~~Af~A~~~~iD~lK~~aPiW 131 (147)
T 2wp4_A 86 AVAHRTGEL-QIGDAAVVIGASAPH-RAEAFDAARMCIELLKQEVPIW 131 (147)
T ss_dssp EEEEECEEE-CTTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHCCCE
T ss_pred EEEEEEccc-CCCCeEEEEEEeccC-HHHHHHHHHHHHHHHHhhCCEE
Confidence 457999985 333333333333444 3333344444444444466654
No 73
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=24.37 E-value=39 Score=22.87 Aligned_cols=44 Identities=9% Similarity=0.186 Sum_probs=19.8
Q ss_pred ceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCCh
Q psy7788 8 MFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 53 (115)
Q Consensus 8 YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~ 53 (115)
-+||+|+. ..|..-+.+...++. -...+.....++..-+..+|-
T Consensus 84 i~HR~G~l-~~ge~~v~Vav~s~H-R~~Af~A~~~~id~lK~~~Pi 127 (135)
T 4ap8_A 84 VFHRLGLV-PVSEASIIIAVSSAH-RAASLEAVSYAIDTLKAKVPI 127 (135)
T ss_dssp EEEECEEE-ETTSEEEEEEEEESS-HHHHHHHHHHHHHHHHHHSCE
T ss_pred ehhhcccc-cCCCeEEEEEEEccC-HHHHHHHHHHHHHHHhhcCCc
Confidence 46999976 333333444333444 223333333333333334553
No 74
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=23.75 E-value=42 Score=22.97 Aligned_cols=47 Identities=6% Similarity=0.103 Sum_probs=23.5
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHH
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFL 55 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l 55 (115)
.-+||+|+. ..|..-+.+....+. -...+.....++..-+.++|-|=
T Consensus 78 ~v~HR~G~l-~vGe~~v~VaVss~H-R~~Af~A~~~~iD~lK~~aPiWK 124 (149)
T 2q5w_E 78 SIVHRIGPL-QISDIAVLIAVSSPH-RKDAYRANEYAIERIKEIVPIWK 124 (149)
T ss_dssp EEEEECEEE-CTTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHCCEEE
T ss_pred EEEEEEccc-CCCCeEEEEEEEccc-HHHHHHHHHHHHHHHHhhCCEEE
Confidence 457999976 333333333333444 33334444444444445677653
No 75
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=23.66 E-value=41 Score=23.01 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=22.9
Q ss_pred cceeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChH
Q psy7788 7 TMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 54 (115)
Q Consensus 7 ~YVHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~ 54 (115)
.-+||+|+. ..|..-+.+-...+. -...+.....++..-+.++|-|
T Consensus 80 ~v~HR~G~l-~vGe~~v~VaVss~H-R~~Af~A~~~~iD~lK~~aPiW 125 (150)
T 1fm0_E 80 TVIHRIGEL-WPGDEIVFVGVTSAH-RSSAFEAGQFIMDYLKTRAPFW 125 (150)
T ss_dssp EEEEECEEE-CTTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHSCEE
T ss_pred EEEEEEccc-CCCCEEEEEEEEcCc-HHHHHHHHHHHHHHHHhcCCEE
Confidence 347999976 334333333333444 3333444444444444466655
No 76
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.81 E-value=50 Score=22.61 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=25.2
Q ss_pred eeeccccccCCCCcceEEeecCCcchHHHHHHHHHHHHhCCCCChHHHHh
Q psy7788 9 FPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58 (115)
Q Consensus 9 VHRIGRTGR~G~~G~aitf~~~~~d~~~~~~l~~~l~~~~q~vp~~l~~~ 58 (115)
+||+|+- ..|..-+.+....+. -...+.....++..-+.++|-|=+++
T Consensus 79 ~HR~G~l-~~Ge~~v~VaVss~H-R~~Af~A~~~~id~lK~~~PiWKkE~ 126 (148)
T 3rpf_A 79 AHSLGDV-LIGQSSFLCVSMGKN-RKNALELYENFIEDFKHNAPIWKYDL 126 (148)
T ss_dssp EEEEEEE-ETTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred EEEEccc-CCCCEEEEEEEEccc-HHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 6999986 444444444444444 33334444444444455677654443
Done!