RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7788
(115 letters)
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 42.4 bits (98), Expect = 1e-06
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES 60
M + +T + R GR G GLA TF++ ND +L D++ +P + ++ S
Sbjct: 104 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI-DISS 162
Query: 61 ETEK 64
E+
Sbjct: 163 YIEQ 166
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 40.8 bits (94), Expect = 5e-06
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES 60
+ T IGR+GR G GLA IN ND L ++ L IP + +
Sbjct: 109 FPKTAETYLHRIGRSGRFGHLGLAINLINW-NDRFNLYKIEQELGTEIAAIPATIDKSLY 167
Query: 61 ETE 63
E
Sbjct: 168 VAE 170
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 39.9 bits (92), Expect = 1e-05
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
+ IGR GR G+ G+A F+ D + +L+ + +P +A L
Sbjct: 104 LPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDIATL 160
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 36.5 bits (83), Expect = 2e-04
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 11 MIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAEL 58
IGR+GR G+ G+A F+ +D +L D++ +P +A+L
Sbjct: 121 RIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEMPMNVADL 167
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 32.6 bits (73), Expect = 0.005
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIP 52
IGRTGR+GK G A + IN+ + L ++ + + +I
Sbjct: 116 IGRTGRAGKKGKAISIINR-REYKKLRYIERAM---KLKIK 152
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.1 bits (69), Expect = 0.015
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 11 MIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 57
IGRTGR GK GLA I ++ L+ ++ I AE
Sbjct: 125 RIGRTGRFGKKGLAFNMIEV-DELPSLMKIQDHF---NSSIKQLNAE 167
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 30.5 bits (68), Expect = 0.033
Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 4/98 (4%)
Query: 12 IGRTGRSGKTGLATTFINKSN---DESVLLDLKHLLLEARQRIPPFLAELESETEKFLDL 68
I + N E +L ++ + E R+ + + + + + +
Sbjct: 108 IEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVR 167
Query: 69 GGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRD 106
G+ + +L A +S D
Sbjct: 168 EGEVIFPDLRTYI-QGSGRTSRLFAGGLTKGASFLLED 204
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine
leukemia virus, MoMLV [TaxId: 11801]}
Length = 40
Score = 27.3 bits (60), Expect = 0.082
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 75 CAYCGGLGHRITACPK 90
CAYC GH CPK
Sbjct: 13 CAYCKEKGHWAKDCPK 28
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 28.7 bits (63), Expect = 0.11
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 11 MIGRTGRSGK--TGLATTFINKSNDESVL 37
M GR GR G G A + K + E +
Sbjct: 164 MAGRAGRPGMDERGEAIIIVGKRDREIAV 192
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 28.3 bits (63), Expect = 0.16
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 12 IGRTGRSGKTGLATTFINKSNDESVL 37
GRTGR GK G+ +
Sbjct: 137 RGRTGR-GKPGIYRFVAPGERPSGMF 161
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.8 bits (60), Expect = 0.26
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 11 MIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELESETEKFLDL 68
++G +GK+ + IN+ N + LDL+ FL EL+ E K +
Sbjct: 34 VLGLRR-TGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKR 90
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 27.6 bits (60), Expect = 0.29
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 11 MIGRTGRSGKTGLATTFIN 29
+GR R K
Sbjct: 175 RLGRILRPSKGKKEAVLYE 193
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 0.40
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 11 MIGRTGRSGKTGLATTFINKSNDE 34
GR GR+ K E
Sbjct: 280 RRGRVGRNPKNENDQYIYMGEPLE 303
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human
immunodeficiency virus type 1, different isolates
[TaxId: 11676]}
Length = 42
Score = 24.1 bits (52), Expect = 1.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 72 ERGCAYCGGLGHRITACPK 90
++GC CG GH++ C +
Sbjct: 22 KKGCWKCGKEGHQMKDCTE 40
Score = 23.7 bits (51), Expect = 1.7
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 75 CAYCGGLGHRITACPK 90
C CG GH C
Sbjct: 4 CFNCGKEGHTARNCRA 19
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 26.0 bits (56), Expect = 1.2
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 11 MIGRTGRSGKTGLATTFINKSNDE 34
GRTGR G + K +
Sbjct: 256 RRGRTGRHMP-GRVIILMAKGTRD 278
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 25.9 bits (56), Expect = 1.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 72 ERGCAYCGGLG 82
RGCAY G G
Sbjct: 49 ARGCAYAGCKG 59
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 25.0 bits (54), Expect = 2.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 72 ERGCAYCGGLG 82
RGCAY G G
Sbjct: 56 IRGCAYAGSKG 66
>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 278
Score = 24.9 bits (54), Expect = 3.1
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 28 INKSNDESVLLDLKHLLLEARQRIPPFLAELESETEK 64
+ S E +++D K + ++ + E K
Sbjct: 231 VKLSEAEYIIIDEKSVNSAVKKIVNEAAEVAGVEVLK 267
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 347
Score = 23.8 bits (51), Expect = 6.3
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 28 INKSNDESVLLDLKHLLLEARQRIPPFLAE 57
+ SN VL L ++E + PF E
Sbjct: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPE 33
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 23.9 bits (51), Expect = 6.7
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 1 MSQMMNTMFPMIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAELES 60
M TM + +G + + +LE + + +
Sbjct: 201 FKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQG 260
Query: 61 ETEKFLDLGGDE-RGCAYCGGLGHRI 85
+T FL GDE +C G G+R+
Sbjct: 261 QTRTFLL-DGDEVIITGHCQGDGYRV 285
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.388
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,832
Number of extensions: 15135
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 21
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)