Query psy7789
Match_columns 197
No_of_seqs 112 out of 1146
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 18:53:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 1.1E-37 2.3E-42 233.6 15.9 188 10-197 121-310 (400)
2 KOG0330|consensus 100.0 6.1E-38 1.3E-42 243.5 13.3 187 10-196 155-343 (476)
3 KOG0331|consensus 100.0 5E-37 1.1E-41 250.1 17.4 186 12-197 193-385 (519)
4 COG0513 SrmB Superfamily II DN 100.0 3.3E-36 7.1E-41 251.7 21.4 185 12-196 128-316 (513)
5 KOG0333|consensus 100.0 1.2E-33 2.7E-38 226.6 17.7 188 9-196 347-560 (673)
6 KOG0326|consensus 100.0 5.2E-34 1.1E-38 217.1 10.6 185 10-195 179-364 (459)
7 KOG0339|consensus 100.0 6.6E-33 1.4E-37 221.9 17.2 186 11-196 323-511 (731)
8 PRK11776 ATP-dependent RNA hel 100.0 4.9E-32 1.1E-36 225.1 21.4 185 12-197 101-286 (460)
9 KOG0345|consensus 100.0 1.7E-32 3.7E-37 217.5 15.6 194 2-196 99-300 (567)
10 PRK11634 ATP-dependent RNA hel 100.0 1.7E-31 3.8E-36 227.4 21.4 186 11-196 102-288 (629)
11 PTZ00110 helicase; Provisional 100.0 1.8E-31 4E-36 224.9 21.2 186 11-196 230-420 (545)
12 PRK04837 ATP-dependent RNA hel 100.0 2.8E-31 6E-36 218.5 21.8 186 11-196 110-298 (423)
13 PRK10590 ATP-dependent RNA hel 100.0 4.5E-31 9.7E-36 219.0 21.7 187 11-197 102-289 (456)
14 PRK04537 ATP-dependent RNA hel 100.0 7.6E-31 1.6E-35 222.0 21.0 187 11-197 111-301 (572)
15 KOG0338|consensus 100.0 5.1E-32 1.1E-36 216.8 12.1 186 11-196 279-469 (691)
16 PLN00206 DEAD-box ATP-dependen 100.0 2.7E-30 5.9E-35 217.0 21.4 186 11-197 223-412 (518)
17 KOG0341|consensus 100.0 2.5E-32 5.5E-37 212.7 7.4 185 11-195 279-463 (610)
18 PRK11192 ATP-dependent RNA hel 100.0 7.4E-30 1.6E-34 210.8 22.4 186 11-196 100-288 (434)
19 KOG0343|consensus 100.0 1.4E-30 3E-35 210.3 16.8 184 12-196 169-358 (758)
20 KOG0327|consensus 100.0 3E-30 6.5E-35 200.5 15.2 185 11-196 121-306 (397)
21 KOG0342|consensus 100.0 4.9E-30 1.1E-34 204.5 16.3 185 11-195 182-372 (543)
22 KOG0337|consensus 100.0 2.6E-30 5.5E-35 202.9 12.1 183 11-193 117-301 (529)
23 PRK01297 ATP-dependent RNA hel 100.0 1E-28 2.2E-33 206.0 21.7 187 11-197 189-379 (475)
24 KOG4284|consensus 100.0 7.2E-30 1.6E-34 209.4 13.9 185 11-196 121-315 (980)
25 KOG0335|consensus 100.0 5.6E-29 1.2E-33 200.4 16.0 186 11-196 179-380 (482)
26 KOG0347|consensus 100.0 4.7E-30 1E-34 207.2 7.9 186 11-196 290-506 (731)
27 KOG0346|consensus 100.0 2.6E-29 5.6E-34 198.3 11.8 193 5-197 116-312 (569)
28 PTZ00424 helicase 45; Provisio 100.0 1.7E-27 3.8E-32 194.8 22.0 187 11-197 123-311 (401)
29 KOG0336|consensus 100.0 2.5E-28 5.4E-33 191.6 15.5 186 11-196 320-508 (629)
30 KOG0340|consensus 100.0 3.1E-28 6.7E-33 187.7 12.0 186 10-195 101-296 (442)
31 KOG0334|consensus 99.9 6.9E-27 1.5E-31 200.4 12.3 186 11-196 465-656 (997)
32 KOG0329|consensus 99.9 3.2E-27 7E-32 175.4 7.8 186 4-190 132-328 (387)
33 KOG0332|consensus 99.9 1.6E-26 3.4E-31 179.4 11.7 182 12-196 188-373 (477)
34 TIGR02621 cas3_GSU0051 CRISPR- 99.9 7.7E-25 1.7E-29 188.6 19.3 174 11-193 112-310 (844)
35 KOG0348|consensus 99.9 6.5E-25 1.4E-29 177.1 10.1 192 4-196 233-490 (708)
36 TIGR03817 DECH_helic helicase/ 99.9 2.5E-23 5.5E-28 180.6 18.3 182 11-197 107-323 (742)
37 PRK09751 putative ATP-dependen 99.9 4.1E-23 8.8E-28 186.8 19.0 183 11-197 76-321 (1490)
38 PLN03137 ATP-dependent DNA hel 99.9 1.3E-22 2.9E-27 177.9 16.2 184 9-197 521-724 (1195)
39 PRK09401 reverse gyrase; Revie 99.9 4.1E-22 8.9E-27 179.0 19.3 171 11-187 150-365 (1176)
40 PRK13767 ATP-dependent helicas 99.9 8.8E-22 1.9E-26 173.9 17.9 183 12-197 124-334 (876)
41 TIGR00614 recQ_fam ATP-depende 99.9 2.8E-21 6.1E-26 161.1 16.9 182 11-197 74-270 (470)
42 PRK00254 ski2-like helicase; P 99.9 1.8E-21 3.8E-26 169.6 15.5 179 11-197 94-315 (720)
43 TIGR01389 recQ ATP-dependent D 99.9 4.2E-21 9.2E-26 164.1 17.1 180 11-196 76-267 (591)
44 PRK14701 reverse gyrase; Provi 99.9 8.1E-21 1.8E-25 174.2 18.8 176 6-186 146-366 (1638)
45 PRK02362 ski2-like helicase; P 99.9 6.4E-21 1.4E-25 166.5 14.9 182 11-197 93-323 (737)
46 PRK11057 ATP-dependent DNA hel 99.9 2.2E-20 4.7E-25 159.8 17.7 181 11-197 88-280 (607)
47 COG1201 Lhr Lhr-like helicases 99.9 7E-21 1.5E-25 163.6 14.5 181 11-197 100-298 (814)
48 COG0514 RecQ Superfamily II DN 99.9 2.6E-21 5.7E-26 161.0 10.4 184 10-197 79-274 (590)
49 PRK10689 transcription-repair 99.8 9.9E-20 2.1E-24 163.5 19.5 173 11-197 676-855 (1147)
50 COG1202 Superfamily II helicas 99.8 1.4E-20 2.9E-25 153.7 12.4 181 9-196 286-483 (830)
51 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.6E-19 3.6E-24 157.5 18.7 172 12-196 74-255 (819)
52 TIGR01054 rgy reverse gyrase. 99.8 2.3E-19 5E-24 161.6 17.5 166 16-189 156-365 (1171)
53 KOG0349|consensus 99.8 2E-20 4.3E-25 148.5 8.9 186 11-196 316-551 (725)
54 PRK11664 ATP-dependent RNA hel 99.8 3.6E-19 7.9E-24 155.5 17.7 173 11-196 76-258 (812)
55 KOG0350|consensus 99.8 4.4E-20 9.4E-25 148.3 10.2 187 10-196 241-476 (620)
56 PRK01172 ski2-like helicase; P 99.8 1.9E-19 4.2E-24 156.0 14.8 179 10-197 90-305 (674)
57 TIGR00580 mfd transcription-re 99.8 7.4E-19 1.6E-23 155.0 18.6 174 11-197 527-706 (926)
58 KOG0344|consensus 99.8 6.5E-20 1.4E-24 149.7 8.0 163 34-196 262-431 (593)
59 PHA02653 RNA helicase NPH-II; 99.8 3.7E-18 8.1E-23 146.1 16.5 167 12-192 253-436 (675)
60 TIGR01587 cas3_core CRISPR-ass 99.8 1.1E-18 2.3E-23 141.0 10.3 159 35-195 95-266 (358)
61 PRK11131 ATP-dependent RNA hel 99.8 1.2E-17 2.7E-22 149.5 16.8 157 32-196 161-332 (1294)
62 PRK10917 ATP-dependent DNA hel 99.8 3.1E-17 6.7E-22 142.0 18.5 174 11-197 337-525 (681)
63 TIGR03158 cas3_cyano CRISPR-as 99.8 5.3E-17 1.2E-21 130.9 18.5 162 33-195 112-316 (357)
64 COG1204 Superfamily II helicas 99.8 2.8E-18 6E-23 148.7 11.1 185 9-197 100-334 (766)
65 COG1205 Distinct helicase fami 99.8 4.8E-17 1E-21 142.7 17.0 189 6-196 139-357 (851)
66 TIGR00643 recG ATP-dependent D 99.7 2.7E-16 5.9E-21 135.3 17.8 173 11-197 311-502 (630)
67 KOG0351|consensus 99.7 4.9E-17 1.1E-21 142.5 13.3 184 9-196 325-528 (941)
68 cd00268 DEADc DEAD-box helicas 99.7 2.1E-16 4.6E-21 117.9 12.6 107 11-117 96-202 (203)
69 TIGR01967 DEAH_box_HrpA ATP-de 99.7 1.2E-15 2.6E-20 137.3 15.8 157 32-196 154-325 (1283)
70 PHA02558 uvsW UvsW helicase; P 99.7 4.7E-16 1E-20 130.7 11.0 169 13-196 187-387 (501)
71 KOG0952|consensus 99.6 2.3E-15 5E-20 130.1 10.8 186 4-196 183-415 (1230)
72 PF00270 DEAD: DEAD/DEAH box h 99.6 1.3E-14 2.8E-19 104.9 10.2 95 11-105 71-168 (169)
73 PRK13766 Hef nuclease; Provisi 99.6 3.6E-13 7.7E-18 118.9 17.8 86 13-99 87-172 (773)
74 PRK09200 preprotein translocas 99.5 1.5E-13 3.3E-18 119.1 14.9 64 133-196 405-471 (790)
75 KOG0947|consensus 99.5 5.7E-14 1.2E-18 120.7 11.6 88 17-112 369-456 (1248)
76 COG1200 RecG RecG-like helicas 99.5 3E-13 6.6E-18 113.5 15.7 174 11-197 338-527 (677)
77 TIGR03714 secA2 accessory Sec 99.5 6.5E-13 1.4E-17 114.4 16.9 64 133-196 401-467 (762)
78 PRK13104 secA preprotein trans 99.5 6.3E-13 1.4E-17 115.6 16.2 64 133-196 421-487 (896)
79 PRK12898 secA preprotein trans 99.5 3.8E-13 8.2E-18 114.4 14.0 103 91-195 410-515 (656)
80 COG1111 MPH1 ERCC4-like helica 99.5 9.2E-13 2E-17 106.9 14.9 106 13-119 87-195 (542)
81 KOG0352|consensus 99.5 1.8E-14 3.9E-19 114.7 4.3 159 34-197 113-299 (641)
82 PRK09694 helicase Cas3; Provis 99.5 9.7E-13 2.1E-17 115.8 14.0 161 35-196 411-606 (878)
83 KOG0951|consensus 99.5 5.3E-13 1.1E-17 117.5 11.3 184 8-197 388-627 (1674)
84 TIGR00963 secA preprotein tran 99.5 2.1E-12 4.6E-17 110.8 14.7 61 133-195 382-445 (745)
85 PRK12904 preprotein translocas 99.5 2.4E-12 5.1E-17 111.8 15.1 61 133-195 407-470 (830)
86 KOG0948|consensus 99.4 8.2E-13 1.8E-17 111.4 8.1 153 15-177 199-407 (1041)
87 COG4581 Superfamily II RNA hel 99.3 3.4E-11 7.3E-16 106.2 12.1 97 16-120 194-293 (1041)
88 KOG0353|consensus 99.3 1.6E-11 3.4E-16 97.0 9.0 182 11-195 157-359 (695)
89 PRK05580 primosome assembly pr 99.3 3.6E-10 7.9E-15 98.2 17.6 175 12-196 215-473 (679)
90 TIGR00595 priA primosomal prot 99.3 3.7E-10 8.1E-15 94.9 17.0 171 12-192 50-299 (505)
91 COG1643 HrpA HrpA-like helicas 99.3 2.2E-10 4.8E-15 100.1 14.7 156 34-196 139-306 (845)
92 PRK13107 preprotein translocas 99.2 3.1E-10 6.6E-15 99.0 13.5 64 133-196 426-492 (908)
93 smart00487 DEXDc DEAD-like hel 99.2 8.5E-10 1.9E-14 80.9 12.9 108 14-121 84-192 (201)
94 KOG0950|consensus 99.2 1E-10 2.2E-15 101.2 8.2 86 12-101 297-389 (1008)
95 COG1197 Mfd Transcription-repa 99.1 1.8E-09 3.9E-14 95.9 15.4 176 9-197 668-849 (1139)
96 PF06862 DUF1253: Protein of u 99.1 2.9E-09 6.3E-14 87.1 15.3 159 34-192 131-339 (442)
97 COG4098 comFA Superfamily II D 99.1 4.9E-09 1.1E-13 82.0 14.4 160 12-187 170-341 (441)
98 PRK04914 ATP-dependent helicas 99.0 1.1E-08 2.3E-13 91.3 13.7 57 140-196 479-537 (956)
99 COG1203 CRISPR-associated heli 99.0 2.1E-09 4.5E-14 94.3 9.2 161 35-196 311-483 (733)
100 KOG0354|consensus 99.0 5.9E-09 1.3E-13 89.3 10.9 91 12-102 132-224 (746)
101 TIGR00603 rad25 DNA repair hel 99.0 1.7E-09 3.7E-14 93.5 7.5 153 34-197 343-535 (732)
102 COG1110 Reverse gyrase [DNA re 99.0 6.9E-09 1.5E-13 90.8 11.1 174 5-186 148-371 (1187)
103 KOG0922|consensus 98.9 5.9E-08 1.3E-12 81.7 15.0 153 35-195 141-308 (674)
104 cd00046 DEXDc DEAD-like helica 98.9 2.3E-08 5.1E-13 69.1 9.7 88 12-99 57-144 (144)
105 COG1061 SSL2 DNA or RNA helica 98.8 1.4E-08 3E-13 84.4 8.1 156 36-197 124-326 (442)
106 PRK12899 secA preprotein trans 98.6 6.3E-08 1.4E-12 85.2 6.0 60 11-72 162-229 (970)
107 KOG0920|consensus 98.6 9.6E-07 2.1E-11 77.9 13.1 157 35-195 265-462 (924)
108 TIGR00631 uvrb excinuclease AB 98.5 1.6E-06 3.5E-11 75.2 12.1 58 139-196 425-485 (655)
109 COG0556 UvrB Helicase subunit 98.5 3.2E-06 6.9E-11 70.0 11.5 101 89-196 386-489 (663)
110 PLN03142 Probable chromatin-re 98.4 5.2E-06 1.1E-10 74.9 11.9 57 140-196 471-530 (1033)
111 PRK05298 excinuclease ABC subu 98.4 2.3E-06 5E-11 74.5 9.2 57 140-196 430-489 (652)
112 PRK12906 secA preprotein trans 98.3 4.9E-06 1.1E-10 72.9 9.8 104 91-196 377-483 (796)
113 KOG0923|consensus 98.3 3.4E-05 7.4E-10 65.6 13.9 154 35-196 356-525 (902)
114 PRK11448 hsdR type I restricti 98.2 2.9E-05 6.4E-10 71.1 12.8 65 34-100 511-595 (1123)
115 KOG0385|consensus 98.2 3.3E-05 7.1E-10 66.6 12.0 55 142-196 476-530 (971)
116 cd00079 HELICc Helicase superf 98.2 1.1E-05 2.4E-10 55.3 7.7 59 138-196 10-71 (131)
117 COG4096 HsdR Type I site-speci 98.0 4.7E-05 1E-09 66.3 10.3 152 35-192 257-470 (875)
118 PRK12900 secA preprotein trans 98.0 4E-05 8.6E-10 68.3 9.8 101 91-195 535-638 (1025)
119 PRK12902 secA preprotein trans 98.0 0.00017 3.8E-09 63.8 12.8 54 133-186 416-472 (939)
120 KOG0925|consensus 98.0 0.00015 3.1E-09 59.9 11.3 138 39-184 132-293 (699)
121 PRK13103 secA preprotein trans 97.9 0.0002 4.4E-09 63.5 12.2 59 133-191 426-487 (913)
122 KOG0924|consensus 97.9 0.00046 1E-08 59.2 13.4 153 35-195 446-615 (1042)
123 KOG4150|consensus 97.9 0.00016 3.5E-09 60.8 10.0 175 19-196 369-576 (1034)
124 KOG2340|consensus 97.9 1.8E-05 3.9E-10 65.6 4.5 155 34-189 385-588 (698)
125 TIGR00348 hsdR type I site-spe 97.8 0.001 2.2E-08 58.3 13.8 61 35-100 339-403 (667)
126 PF04851 ResIII: Type III rest 97.5 0.00028 6E-09 51.1 6.3 64 32-100 109-183 (184)
127 KOG0951|consensus 97.5 0.0011 2.4E-08 60.5 10.4 151 11-173 1214-1379(1674)
128 PF02399 Herpes_ori_bp: Origin 97.5 0.0042 9.1E-08 54.7 13.7 153 35-191 122-320 (824)
129 KOG0926|consensus 97.5 0.00041 9E-09 60.5 7.3 137 34-176 349-504 (1172)
130 PF14617 CMS1: U3-containing 9 97.5 0.00021 4.5E-09 54.9 4.9 56 13-68 154-211 (252)
131 KOG0949|consensus 97.5 0.00021 4.6E-09 63.4 5.3 67 34-102 605-674 (1330)
132 KOG1123|consensus 97.3 0.0014 3E-08 54.6 8.0 154 34-197 390-582 (776)
133 COG1198 PriA Primosomal protei 97.3 0.0012 2.6E-08 57.9 8.2 148 5-164 265-431 (730)
134 KOG0952|consensus 97.1 9.2E-05 2E-09 65.9 -0.4 176 12-195 1001-1229(1230)
135 TIGR00596 rad1 DNA repair prot 97.1 0.0047 1E-07 55.2 9.5 88 35-122 8-101 (814)
136 KOG0384|consensus 97.0 0.011 2.4E-07 54.0 11.1 52 145-196 691-742 (1373)
137 TIGR02562 cas3_yersinia CRISPR 96.9 0.0012 2.5E-08 59.7 4.7 161 35-196 563-805 (1110)
138 PRK12326 preprotein translocas 96.6 0.02 4.3E-07 50.2 9.6 99 91-191 364-465 (764)
139 PF00176 SNF2_N: SNF2 family N 96.6 0.003 6.5E-08 49.5 4.1 85 12-99 85-172 (299)
140 PRK14873 primosome assembly pr 96.5 0.051 1.1E-06 47.8 11.3 93 5-106 208-310 (665)
141 PF07652 Flavi_DEAD: Flaviviru 96.4 0.0081 1.8E-07 42.1 5.1 64 37-103 75-140 (148)
142 PRK12903 secA preprotein trans 96.4 0.021 4.5E-07 51.0 8.7 97 91-189 363-462 (925)
143 PF07517 SecA_DEAD: SecA DEAD- 96.2 0.015 3.2E-07 45.3 6.0 59 11-71 145-210 (266)
144 KOG1000|consensus 96.2 0.2 4.4E-06 42.1 12.5 41 154-194 493-533 (689)
145 CHL00122 secA preprotein trans 95.8 0.068 1.5E-06 47.9 8.8 95 91-187 361-458 (870)
146 TIGR01407 dinG_rel DnaQ family 95.5 0.085 1.8E-06 47.9 8.6 41 32-72 414-454 (850)
147 cd01524 RHOD_Pyr_redox Member 95.1 0.16 3.4E-06 32.4 6.8 37 153-189 51-87 (90)
148 PRK12899 secA preprotein trans 95.0 0.16 3.6E-06 46.0 8.7 99 91-191 505-606 (970)
149 KOG0387|consensus 95.0 0.79 1.7E-05 40.8 12.4 56 141-196 531-590 (923)
150 PRK12901 secA preprotein trans 94.9 0.12 2.6E-06 47.1 7.6 101 91-193 565-668 (1112)
151 TIGR03117 cas_csf4 CRISPR-asso 94.4 0.041 8.8E-07 48.0 3.4 40 33-72 181-220 (636)
152 smart00490 HELICc helicase sup 94.3 0.043 9.3E-07 33.7 2.6 29 168-196 2-30 (82)
153 PF00271 Helicase_C: Helicase 94.2 0.035 7.7E-07 34.3 2.1 26 171-196 1-26 (78)
154 cd01533 4RHOD_Repeat_2 Member 94.1 0.35 7.6E-06 32.0 6.8 38 153-190 66-105 (109)
155 cd01534 4RHOD_Repeat_3 Member 93.9 0.29 6.3E-06 31.5 6.0 36 153-188 56-91 (95)
156 KOG0389|consensus 93.4 0.13 2.7E-06 45.5 4.5 87 8-98 470-561 (941)
157 PRK12326 preprotein translocas 93.3 0.09 1.9E-06 46.3 3.5 59 11-71 146-211 (764)
158 PF09848 DUF2075: Uncharacteri 93.2 0.22 4.8E-06 40.4 5.6 131 11-151 30-181 (352)
159 COG0610 Type I site-specific r 93.0 0.3 6.5E-06 45.0 6.5 73 23-99 338-413 (962)
160 cd01523 RHOD_Lact_B Member of 92.9 0.18 3.9E-06 32.7 3.9 37 153-189 61-97 (100)
161 PF13872 AAA_34: P-loop contai 92.8 0.096 2.1E-06 41.3 2.7 44 61-105 175-226 (303)
162 PF06733 DEAD_2: DEAD_2; Inte 92.7 0.075 1.6E-06 38.5 1.9 40 33-72 118-159 (174)
163 KOG3089|consensus 92.6 0.23 5.1E-06 37.2 4.3 40 27-66 188-228 (271)
164 cd01526 RHOD_ThiF Member of th 92.6 0.69 1.5E-05 31.3 6.5 38 153-190 72-111 (122)
165 PRK12906 secA preprotein trans 92.5 0.13 2.8E-06 46.0 3.4 59 11-71 148-213 (796)
166 PRK08074 bifunctional ATP-depe 92.1 0.65 1.4E-05 42.7 7.5 34 143-176 742-775 (928)
167 TIGR01407 dinG_rel DnaQ family 91.9 0.27 5.9E-06 44.7 4.8 32 144-175 665-696 (850)
168 KOG0391|consensus 91.8 0.23 5E-06 46.0 4.1 82 12-98 690-774 (1958)
169 cd00158 RHOD Rhodanese Homolog 91.7 0.93 2E-05 28.1 6.0 36 153-188 50-86 (89)
170 smart00450 RHOD Rhodanese Homo 91.7 0.46 1E-05 30.1 4.6 38 153-190 56-94 (100)
171 CHL00122 secA preprotein trans 91.4 0.18 3.8E-06 45.4 2.9 59 11-71 144-209 (870)
172 smart00488 DEXDc2 DEAD-like he 91.3 0.19 4.1E-06 39.7 2.9 39 33-72 210-250 (289)
173 smart00489 DEXDc3 DEAD-like he 91.3 0.19 4.1E-06 39.7 2.9 39 33-72 210-250 (289)
174 cd01529 4RHOD_Repeats Member o 91.1 0.47 1E-05 30.5 4.2 36 153-188 56-92 (96)
175 PRK05642 DNA replication initi 91.0 0.5 1.1E-05 36.1 4.8 89 14-102 46-142 (234)
176 cd01532 4RHOD_Repeat_1 Member 90.6 1 2.2E-05 28.7 5.4 36 153-188 50-88 (92)
177 KOG0391|consensus 90.5 0.38 8.2E-06 44.7 4.1 65 133-197 1256-1320(1958)
178 KOG0921|consensus 90.2 0.77 1.7E-05 41.6 5.7 42 154-195 644-692 (1282)
179 cd01528 RHOD_2 Member of the R 89.9 1.1 2.4E-05 29.0 5.2 38 153-190 58-96 (101)
180 COG1199 DinG Rad3-related DNA 89.8 3.1 6.8E-05 36.7 9.4 50 141-190 467-517 (654)
181 PRK08074 bifunctional ATP-depe 89.7 0.34 7.4E-06 44.5 3.4 40 33-72 430-469 (928)
182 PRK12903 secA preprotein trans 89.5 0.4 8.6E-06 43.2 3.5 59 11-71 146-211 (925)
183 PF13086 AAA_11: AAA domain; P 89.5 1.7 3.7E-05 32.3 6.7 36 32-71 168-205 (236)
184 PF02463 SMC_N: RecF/RecN/SMC 89.5 0.31 6.7E-06 36.6 2.5 43 56-98 156-198 (220)
185 cd01518 RHOD_YceA Member of th 89.1 0.49 1.1E-05 30.7 3.0 37 153-189 61-98 (101)
186 PF00308 Bac_DnaA: Bacterial d 89.1 0.96 2.1E-05 34.2 5.0 92 12-103 33-144 (219)
187 PF13401 AAA_22: AAA domain; P 89.0 1 2.2E-05 30.5 4.7 35 60-97 89-124 (131)
188 TIGR00604 rad3 DNA repair heli 89.0 3.3 7.2E-05 37.0 8.9 34 144-177 513-546 (705)
189 cd01520 RHOD_YbbB Member of th 88.9 0.71 1.5E-05 31.6 3.8 37 153-189 86-123 (128)
190 cd01527 RHOD_YgaP Member of th 88.9 0.92 2E-05 29.2 4.2 37 153-189 54-91 (99)
191 PF13173 AAA_14: AAA domain 88.9 0.88 1.9E-05 31.0 4.3 40 58-100 61-100 (128)
192 TIGR02981 phageshock_pspE phag 88.8 1.6 3.5E-05 28.6 5.3 36 153-188 58-93 (101)
193 cd01521 RHOD_PspE2 Member of t 88.6 0.94 2E-05 30.0 4.2 39 153-191 64-104 (110)
194 PRK07246 bifunctional ATP-depe 88.4 0.75 1.6E-05 41.7 4.6 39 33-72 412-450 (820)
195 COG1198 PriA Primosomal protei 88.1 0.92 2E-05 40.4 4.8 60 136-195 225-288 (730)
196 PRK12422 chromosomal replicati 88.0 3.9 8.5E-05 34.4 8.3 94 12-105 140-251 (445)
197 PRK06893 DNA replication initi 87.9 1.2 2.6E-05 33.8 4.8 89 15-103 41-138 (229)
198 PF05621 TniB: Bacterial TniB 87.9 0.57 1.2E-05 37.1 3.1 38 56-93 143-182 (302)
199 PRK14087 dnaA chromosomal repl 87.9 1.5 3.2E-05 37.0 5.7 89 12-100 140-250 (450)
200 cd01444 GlpE_ST GlpE sulfurtra 87.7 1.1 2.3E-05 28.6 4.0 36 153-188 56-92 (96)
201 KOG0392|consensus 87.7 1.7 3.6E-05 40.8 6.1 87 13-106 1057-1146(1549)
202 cd01525 RHOD_Kc Member of the 87.4 1.5 3.3E-05 28.5 4.6 37 153-189 65-102 (105)
203 PRK11747 dinG ATP-dependent DN 87.2 0.87 1.9E-05 40.6 4.2 40 33-72 218-260 (697)
204 PRK14873 primosome assembly pr 87.1 1.7 3.7E-05 38.5 5.8 57 139-195 171-232 (665)
205 KOG0964|consensus 86.8 1.2 2.7E-05 40.4 4.8 94 12-113 1078-1172(1200)
206 PRK10287 thiosulfate:cyanide s 86.5 3 6.6E-05 27.5 5.6 36 154-189 61-96 (104)
207 cd01447 Polysulfide_ST Polysul 86.4 0.84 1.8E-05 29.5 2.9 37 153-189 61-98 (103)
208 PRK08727 hypothetical protein; 86.2 1.7 3.6E-05 33.1 4.8 88 14-101 42-138 (233)
209 KOG0953|consensus 85.9 2.5 5.4E-05 36.4 5.9 156 10-194 237-398 (700)
210 KOG0347|consensus 85.9 0.83 1.8E-05 39.1 3.1 42 156-197 266-311 (731)
211 cd01519 RHOD_HSP67B2 Member of 85.9 1 2.3E-05 29.3 3.2 37 153-189 66-103 (106)
212 PF11019 DUF2608: Protein of u 85.4 13 0.00027 28.9 9.3 60 127-186 149-211 (252)
213 PRK11747 dinG ATP-dependent DN 85.4 9.8 0.00021 34.1 9.7 42 143-186 525-567 (697)
214 PF00271 Helicase_C: Helicase 85.2 2.1 4.5E-05 26.1 4.1 51 11-67 6-60 (78)
215 cd00561 CobA_CobO_BtuR ATP:cor 85.0 3.3 7.1E-05 29.7 5.5 54 55-108 92-147 (159)
216 KOG0390|consensus 85.0 1.4 3E-05 39.4 4.2 58 140-197 578-639 (776)
217 TIGR00708 cobA cob(I)alamin ad 85.0 3 6.4E-05 30.4 5.3 54 56-109 95-150 (173)
218 PF05872 DUF853: Bacterial pro 84.5 2.3 5E-05 35.7 5.0 44 55-98 251-299 (502)
219 PRK12900 secA preprotein trans 84.5 0.82 1.8E-05 41.9 2.7 59 11-71 206-271 (1025)
220 cd01449 TST_Repeat_2 Thiosulfa 84.0 2 4.2E-05 28.6 3.9 36 153-188 78-114 (118)
221 cd01448 TST_Repeat_1 Thiosulfa 84.0 2.8 6.2E-05 28.0 4.7 37 153-189 79-117 (122)
222 PF13177 DNA_pol3_delta2: DNA 83.9 2 4.3E-05 30.7 4.1 65 34-100 67-143 (162)
223 PRK00149 dnaA chromosomal repl 83.8 2.6 5.7E-05 35.4 5.3 89 12-101 147-255 (450)
224 PRK07003 DNA polymerase III su 83.5 2.8 6E-05 37.7 5.4 39 57-96 118-156 (830)
225 TIGR00362 DnaA chromosomal rep 83.4 3.1 6.8E-05 34.4 5.6 89 13-102 136-244 (405)
226 PRK08762 molybdopterin biosynt 83.4 4.7 0.0001 33.1 6.5 38 152-189 56-94 (376)
227 cd01522 RHOD_1 Member of the R 83.4 3.9 8.4E-05 27.4 5.1 39 152-190 63-102 (117)
228 PRK05580 primosome assembly pr 83.3 3.4 7.4E-05 36.8 6.0 56 139-194 173-232 (679)
229 COG1199 DinG Rad3-related DNA 83.3 1.1 2.4E-05 39.5 3.0 40 33-72 193-234 (654)
230 COG0653 SecA Preprotein transl 83.2 3.5 7.6E-05 37.2 5.9 97 93-191 368-467 (822)
231 PRK14086 dnaA chromosomal repl 82.8 3.7 8E-05 36.0 5.9 92 12-103 313-424 (617)
232 KOG4439|consensus 82.8 1.3 2.8E-05 39.1 3.0 60 13-73 411-478 (901)
233 PRK06835 DNA replication prote 82.3 8.8 0.00019 31.0 7.5 87 14-101 184-290 (329)
234 TIGR00595 priA primosomal prot 82.2 4.5 9.7E-05 34.7 6.1 44 152-195 24-68 (505)
235 PRK05986 cob(I)alamin adenolsy 82.0 4.7 0.0001 29.8 5.4 55 56-110 113-169 (191)
236 cd01535 4RHOD_Repeat_4 Member 82.0 4.8 0.0001 28.2 5.3 36 154-189 50-86 (145)
237 PRK08084 DNA replication initi 81.9 3.1 6.7E-05 31.7 4.7 88 13-101 45-142 (235)
238 PRK04296 thymidine kinase; Pro 81.6 4.6 9.9E-05 29.7 5.3 54 39-99 62-115 (190)
239 PRK07414 cob(I)yrinic acid a,c 81.4 5.3 0.00011 29.2 5.4 52 56-107 113-166 (178)
240 PRK00162 glpE thiosulfate sulf 81.3 3.1 6.7E-05 27.3 4.0 38 153-190 58-96 (108)
241 PRK12323 DNA polymerase III su 81.2 2.3 4.9E-05 37.6 4.0 41 56-97 122-162 (700)
242 PRK06526 transposase; Provisio 81.0 7.1 0.00015 30.2 6.4 68 32-99 124-201 (254)
243 COG0593 DnaA ATPase involved i 81.0 6 0.00013 32.9 6.2 92 12-104 112-223 (408)
244 TIGR00643 recG ATP-dependent D 81.0 6.7 0.00014 34.6 6.9 54 11-70 481-538 (630)
245 PRK10689 transcription-repair 80.6 3.5 7.5E-05 39.0 5.3 53 12-70 835-891 (1147)
246 PRK07246 bifunctional ATP-depe 79.8 13 0.00029 33.9 8.6 30 151-180 645-674 (820)
247 PRK06620 hypothetical protein; 79.7 12 0.00025 28.2 7.1 78 14-101 45-125 (214)
248 PLN02160 thiosulfate sulfurtra 79.7 2.7 5.9E-05 29.1 3.4 38 153-190 81-119 (136)
249 COG2109 BtuR ATP:corrinoid ade 79.6 9.2 0.0002 28.3 6.1 54 57-110 121-176 (198)
250 KOG0989|consensus 79.6 2.3 4.9E-05 33.9 3.2 43 56-99 127-169 (346)
251 PHA02544 44 clamp loader, smal 79.5 2.6 5.7E-05 33.4 3.7 41 57-97 99-139 (316)
252 KOG2170|consensus 79.4 3.2 6.9E-05 33.0 3.9 56 56-112 176-238 (344)
253 PF02572 CobA_CobO_BtuR: ATP:c 79.3 7 0.00015 28.4 5.5 53 56-108 94-148 (172)
254 PRK14974 cell division protein 79.1 7.6 0.00016 31.5 6.2 55 57-111 221-276 (336)
255 COG1196 Smc Chromosome segrega 78.9 3 6.5E-05 39.5 4.4 79 31-111 1046-1139(1163)
256 PRK07764 DNA polymerase III su 78.9 3.2 6.9E-05 37.8 4.3 39 57-96 119-157 (824)
257 PF00581 Rhodanese: Rhodanese- 78.5 3.1 6.7E-05 27.0 3.3 36 154-189 68-109 (113)
258 PRK08116 hypothetical protein; 78.1 13 0.00029 28.9 7.2 88 15-103 116-225 (268)
259 PRK01415 hypothetical protein; 78.0 3 6.5E-05 32.2 3.4 39 153-191 171-210 (247)
260 PRK05320 rhodanese superfamily 77.5 3.5 7.7E-05 32.0 3.8 39 153-191 175-214 (257)
261 PRK12723 flagellar biosynthesi 77.5 40 0.00087 28.0 10.9 96 11-110 205-309 (388)
262 PF04273 DUF442: Putative phos 77.5 5.8 0.00013 26.5 4.3 35 139-173 72-106 (110)
263 PLN03025 replication factor C 77.5 3.7 8.1E-05 32.8 4.0 39 57-96 98-136 (319)
264 PRK09087 hypothetical protein; 77.3 14 0.0003 28.0 6.9 82 14-101 45-128 (226)
265 PRK14088 dnaA chromosomal repl 77.2 20 0.00043 30.2 8.4 94 13-106 130-244 (440)
266 cd01530 Cdc25 Cdc25 phosphatas 76.8 3.9 8.5E-05 27.6 3.5 37 153-189 68-118 (121)
267 TIGR00604 rad3 DNA repair heli 76.7 1.8 4E-05 38.6 2.2 39 33-72 194-234 (705)
268 TIGR00580 mfd transcription-re 76.6 5.5 0.00012 36.8 5.2 53 12-70 686-742 (926)
269 PRK07940 DNA polymerase III su 76.5 9.8 0.00021 31.6 6.3 66 34-102 84-159 (394)
270 PRK10536 hypothetical protein; 75.8 4.9 0.00011 31.3 4.1 35 60-98 178-212 (262)
271 COG0556 UvrB Helicase subunit 75.4 20 0.00043 31.1 7.7 91 11-110 469-568 (663)
272 PF13604 AAA_30: AAA domain; P 75.3 6.7 0.00014 29.0 4.6 40 56-99 91-131 (196)
273 TIGR03817 DECH_helic helicase/ 75.1 7.5 0.00016 35.1 5.6 43 153-195 81-126 (742)
274 PRK14958 DNA polymerase III su 75.0 4.6 0.0001 34.7 4.1 39 57-96 118-156 (509)
275 PRK09111 DNA polymerase III su 74.7 11 0.00024 33.1 6.3 40 56-96 130-169 (598)
276 TIGR03865 PQQ_CXXCW PQQ-depend 74.6 5.1 0.00011 28.7 3.7 38 152-189 115-154 (162)
277 PRK05597 molybdopterin biosynt 74.0 6.3 0.00014 32.1 4.5 36 154-189 315-351 (355)
278 KOG1001|consensus 73.9 6.5 0.00014 35.0 4.8 58 34-99 234-292 (674)
279 KOG0990|consensus 73.8 3.9 8.5E-05 32.8 3.1 39 57-96 130-168 (360)
280 cd03418 GRX_GRXb_1_3_like Glut 73.2 12 0.00026 22.4 4.7 39 156-194 2-41 (75)
281 PRK08903 DnaA regulatory inact 73.2 16 0.00034 27.4 6.3 83 14-101 43-133 (227)
282 TIGR01447 recD exodeoxyribonuc 73.1 5.3 0.00011 35.0 4.1 38 57-98 258-295 (586)
283 PRK12901 secA preprotein trans 72.9 3.4 7.3E-05 38.3 2.9 59 11-71 237-303 (1112)
284 TIGR03420 DnaA_homol_Hda DnaA 72.9 5 0.00011 30.0 3.5 45 56-100 88-133 (226)
285 PRK13958 N-(5'-phosphoribosyl) 72.8 19 0.00042 26.9 6.6 53 140-194 40-92 (207)
286 cd06270 PBP1_GalS_like Ligand 72.8 39 0.00084 25.6 11.4 38 142-179 165-202 (268)
287 PRK07399 DNA polymerase III su 72.6 15 0.00033 29.4 6.3 39 57-97 123-161 (314)
288 PF05127 Helicase_RecD: Helica 72.5 6.1 0.00013 28.9 3.7 35 58-100 90-124 (177)
289 TIGR01448 recD_rel helicase, p 72.3 5.6 0.00012 35.7 4.2 38 57-98 415-452 (720)
290 PRK08181 transposase; Validate 71.5 24 0.00052 27.6 7.1 68 32-100 132-209 (269)
291 TIGR00678 holB DNA polymerase 71.4 5.3 0.00011 29.1 3.3 39 56-95 94-132 (188)
292 TIGR00631 uvrb excinuclease AB 71.3 51 0.0011 29.4 9.7 94 11-110 465-564 (655)
293 TIGR03117 cas_csf4 CRISPR-asso 71.1 41 0.00088 29.9 9.0 47 141-188 458-505 (636)
294 PF02562 PhoH: PhoH-like prote 71.0 7.9 0.00017 29.0 4.1 35 60-98 121-155 (205)
295 KOG0333|consensus 70.9 10 0.00022 32.6 5.1 47 11-63 540-590 (673)
296 cd03027 GRX_DEP Glutaredoxin ( 70.8 14 0.00031 22.1 4.7 40 155-194 2-42 (73)
297 PRK10875 recD exonuclease V su 70.2 7 0.00015 34.4 4.2 37 58-98 265-301 (615)
298 PRK00440 rfc replication facto 70.0 13 0.00028 29.3 5.4 39 57-96 101-139 (319)
299 PF13344 Hydrolase_6: Haloacid 70.0 12 0.00027 24.3 4.5 40 142-181 19-59 (101)
300 COG0607 PspE Rhodanese-related 69.8 7.1 0.00015 25.3 3.4 38 152-189 60-98 (110)
301 PRK12377 putative replication 69.7 11 0.00023 29.2 4.7 85 13-97 101-204 (248)
302 PF12340 DUF3638: Protein of u 69.5 5 0.00011 30.6 2.8 40 33-72 129-186 (229)
303 PRK10917 ATP-dependent DNA hel 69.2 6.9 0.00015 34.9 4.0 44 152-195 309-356 (681)
304 PF13304 AAA_21: AAA domain; P 69.0 4.6 0.0001 30.1 2.6 38 60-97 259-297 (303)
305 PRK00142 putative rhodanese-re 68.6 7.5 0.00016 31.1 3.8 39 153-191 171-210 (314)
306 COG2519 GCD14 tRNA(1-methylade 68.5 54 0.0012 25.5 8.1 109 67-178 95-213 (256)
307 cd00268 DEADc DEAD-box helicas 68.4 19 0.0004 26.3 5.7 41 153-193 69-113 (203)
308 cd01445 TST_Repeats Thiosulfat 68.3 16 0.00035 25.3 5.0 49 141-189 82-135 (138)
309 PF00004 AAA: ATPase family as 68.2 7.9 0.00017 25.8 3.4 15 59-73 59-73 (132)
310 PRK09112 DNA polymerase III su 68.1 10 0.00023 30.8 4.6 40 56-96 139-178 (351)
311 PHA03368 DNA packaging termina 67.9 4.7 0.0001 35.7 2.6 42 57-102 351-393 (738)
312 COG4408 Uncharacterized protei 67.5 44 0.00096 27.2 7.6 94 88-193 112-211 (431)
313 COG1435 Tdk Thymidine kinase [ 67.5 21 0.00045 26.6 5.5 70 12-83 32-106 (201)
314 cd01443 Cdc25_Acr2p Cdc25 enzy 67.0 31 0.00068 22.6 6.1 35 154-188 67-109 (113)
315 PF05707 Zot: Zonular occluden 66.8 6.8 0.00015 28.8 3.0 54 58-111 79-137 (193)
316 PRK11889 flhF flagellar biosyn 66.7 65 0.0014 27.1 8.7 100 11-111 268-375 (436)
317 PRK04132 replication factor C 66.4 12 0.00026 34.3 4.9 37 58-95 630-666 (846)
318 PRK14960 DNA polymerase III su 66.4 10 0.00022 33.8 4.3 38 57-95 117-154 (702)
319 PF00462 Glutaredoxin: Glutare 65.9 12 0.00027 21.4 3.5 39 157-195 2-41 (60)
320 cd03028 GRX_PICOT_like Glutare 65.7 22 0.00047 22.5 4.9 41 154-194 8-54 (90)
321 PRK14951 DNA polymerase III su 65.6 8.9 0.00019 33.8 3.9 18 56-73 122-139 (618)
322 PRK13341 recombination factor 65.6 22 0.00048 32.1 6.4 46 57-107 108-153 (725)
323 COG4555 NatA ABC-type Na+ tran 65.3 10 0.00022 28.7 3.5 54 56-109 149-202 (245)
324 PRK07994 DNA polymerase III su 65.2 9.5 0.00021 33.8 4.0 38 57-95 118-155 (647)
325 COG2909 MalT ATP-dependent tra 65.1 12 0.00026 34.1 4.5 42 59-100 130-171 (894)
326 PRK14964 DNA polymerase III su 64.9 12 0.00026 32.0 4.5 39 56-95 114-152 (491)
327 PRK08451 DNA polymerase III su 64.9 7.4 0.00016 33.6 3.2 40 56-96 115-154 (535)
328 COG1197 Mfd Transcription-repa 64.8 17 0.00036 34.3 5.5 54 11-70 828-885 (1139)
329 PF12846 AAA_10: AAA-like doma 64.5 14 0.0003 28.6 4.6 32 57-88 219-251 (304)
330 PRK13342 recombination factor 64.4 22 0.00048 29.6 5.9 39 57-100 91-129 (413)
331 KOG1132|consensus 64.4 6.4 0.00014 35.7 2.8 42 29-71 217-260 (945)
332 PRK08691 DNA polymerase III su 64.3 10 0.00022 33.9 3.9 40 56-96 117-156 (709)
333 PRK04841 transcriptional regul 64.1 8.1 0.00018 35.3 3.6 43 58-100 121-163 (903)
334 PRK07413 hypothetical protein; 63.8 21 0.00045 29.5 5.4 54 56-109 123-178 (382)
335 PRK14949 DNA polymerase III su 63.8 10 0.00022 34.9 4.0 42 57-100 118-159 (944)
336 PRK14956 DNA polymerase III su 63.8 9.1 0.0002 32.6 3.5 16 57-72 120-135 (484)
337 PRK08058 DNA polymerase III su 63.6 28 0.0006 28.0 6.2 62 34-97 77-148 (329)
338 PF03354 Terminase_1: Phage Te 63.5 6.6 0.00014 33.4 2.7 40 57-97 122-161 (477)
339 KOG0018|consensus 62.9 9.1 0.0002 35.5 3.5 35 61-97 1076-1110(1141)
340 PF15586 Imm47: Immunity prote 62.8 9.3 0.0002 25.8 2.8 34 34-68 44-77 (116)
341 COG2812 DnaX DNA polymerase II 62.8 12 0.00027 32.1 4.1 27 56-86 117-143 (515)
342 PRK07952 DNA replication prote 62.7 29 0.00062 26.8 5.8 87 12-98 98-204 (244)
343 PRK11784 tRNA 2-selenouridine 62.7 21 0.00044 29.1 5.3 40 152-191 87-127 (345)
344 cd01531 Acr2p Eukaryotic arsen 62.5 41 0.00089 22.0 6.2 36 154-189 63-108 (113)
345 cd03030 GRX_SH3BGR Glutaredoxi 62.5 22 0.00047 22.9 4.4 33 163-195 16-48 (92)
346 PRK08769 DNA polymerase III su 62.5 32 0.00069 27.7 6.3 42 56-98 111-152 (319)
347 PRK13766 Hef nuclease; Provisi 62.4 21 0.00045 32.3 5.8 48 148-195 53-104 (773)
348 KOG0344|consensus 62.0 39 0.00083 29.4 6.8 53 11-69 411-467 (593)
349 COG1875 NYN ribonuclease and A 61.9 19 0.0004 29.7 4.7 52 42-97 325-386 (436)
350 COG3421 Uncharacterized protei 61.7 15 0.00033 32.3 4.4 69 33-101 80-167 (812)
351 TIGR00596 rad1 DNA repair prot 61.6 12 0.00025 34.3 3.9 39 137-175 267-317 (814)
352 PLN02955 8-amino-7-oxononanoat 61.5 3.6 7.9E-05 34.9 0.8 28 157-184 397-424 (476)
353 PRK12402 replication factor C 61.2 10 0.00023 30.1 3.4 39 57-96 124-162 (337)
354 PRK14952 DNA polymerase III su 61.2 14 0.00029 32.5 4.2 40 56-96 116-155 (584)
355 KOG0331|consensus 61.1 14 0.00031 31.7 4.2 46 12-63 365-414 (519)
356 KOG0933|consensus 61.0 13 0.00028 34.4 4.0 80 11-97 1064-1143(1174)
357 COG0553 HepA Superfamily II DN 60.8 22 0.00047 32.3 5.7 57 140-196 692-754 (866)
358 PRK11493 sseA 3-mercaptopyruva 60.8 10 0.00022 29.7 3.2 36 154-189 232-268 (281)
359 PRK14961 DNA polymerase III su 60.5 13 0.00028 30.4 3.8 39 57-96 118-156 (363)
360 PRK14969 DNA polymerase III su 60.4 8.8 0.00019 33.1 2.9 40 56-96 117-156 (527)
361 KOG0390|consensus 60.0 32 0.00068 31.2 6.2 91 12-107 325-423 (776)
362 cd01446 DSP_MapKP N-terminal r 59.9 26 0.00057 23.7 4.8 38 152-189 74-123 (132)
363 PF00448 SRP54: SRP54-type pro 59.6 45 0.00098 24.6 6.3 98 12-111 29-137 (196)
364 PRK10869 recombination and rep 59.6 9.4 0.0002 33.2 3.0 85 58-151 452-536 (553)
365 TIGR00365 monothiol glutaredox 59.4 45 0.00098 21.5 6.0 41 154-194 12-58 (97)
366 PRK14965 DNA polymerase III su 59.1 16 0.00034 32.0 4.3 40 56-96 117-156 (576)
367 PRK00411 cdc6 cell division co 59.0 18 0.00038 29.6 4.4 26 59-84 139-164 (394)
368 PRK07413 hypothetical protein; 59.0 28 0.00061 28.8 5.4 53 57-109 304-359 (382)
369 TIGR03167 tRNA_sel_U_synt tRNA 59.0 27 0.00059 28.0 5.3 36 154-189 75-111 (311)
370 COG0470 HolB ATPase involved i 58.9 17 0.00037 28.6 4.2 62 35-97 74-147 (325)
371 PRK07471 DNA polymerase III su 58.8 12 0.00026 30.7 3.3 42 56-98 139-180 (365)
372 PRK04195 replication factor C 58.6 12 0.00025 31.9 3.3 84 13-96 39-137 (482)
373 cd01120 RecA-like_NTPases RecA 58.4 15 0.00032 25.3 3.5 44 56-99 83-136 (165)
374 cd00009 AAA The AAA+ (ATPases 58.2 15 0.00032 24.6 3.3 30 56-86 82-111 (151)
375 TIGR00614 recQ_fam ATP-depende 58.1 22 0.00047 30.2 4.9 43 153-195 51-93 (470)
376 PRK14959 DNA polymerase III su 58.0 16 0.00035 32.2 4.1 15 57-71 118-132 (624)
377 KOG1002|consensus 57.8 9.4 0.0002 32.7 2.5 56 141-196 621-681 (791)
378 COG1205 Distinct helicase fami 57.7 32 0.00069 31.7 6.1 54 142-195 104-163 (851)
379 PRK11034 clpA ATP-dependent Cl 57.6 19 0.00042 32.6 4.7 44 60-103 280-327 (758)
380 KOG0740|consensus 57.3 41 0.00088 28.3 6.1 64 56-119 243-319 (428)
381 PRK14722 flhF flagellar biosyn 57.3 90 0.002 25.8 8.1 70 38-111 199-270 (374)
382 COG1609 PurR Transcriptional r 57.2 1E+02 0.0022 24.8 12.4 156 12-179 88-262 (333)
383 COG2256 MGS1 ATPase related to 57.2 14 0.0003 30.7 3.3 40 58-102 104-143 (436)
384 KOG0341|consensus 56.7 19 0.0004 29.9 4.0 47 11-63 444-494 (610)
385 PRK14957 DNA polymerase III su 56.6 14 0.0003 32.2 3.4 40 56-96 117-156 (546)
386 PRK06731 flhF flagellar biosyn 56.5 96 0.0021 24.3 8.8 113 34-161 130-246 (270)
387 TIGR00634 recN DNA repair prot 56.4 12 0.00026 32.6 3.1 84 58-150 462-545 (563)
388 COG0653 SecA Preprotein transl 56.3 12 0.00026 34.0 3.1 59 11-71 148-213 (822)
389 PRK05728 DNA polymerase III su 56.0 24 0.00053 24.6 4.1 43 134-176 7-52 (142)
390 TIGR01389 recQ ATP-dependent D 55.8 24 0.00052 30.9 4.9 43 153-195 53-95 (591)
391 PLN00206 DEAD-box ATP-dependen 55.4 31 0.00066 29.7 5.4 48 11-64 391-442 (518)
392 cd03239 ABC_SMC_head The struc 55.3 13 0.00029 27.0 2.8 41 57-97 115-156 (178)
393 PF13514 AAA_27: AAA domain 55.1 19 0.00042 34.1 4.4 54 62-117 1055-1108(1111)
394 PRK05917 DNA polymerase III su 54.3 40 0.00086 26.8 5.4 41 57-98 94-134 (290)
395 TIGR02760 TraI_TIGR conjugativ 54.3 1.8E+02 0.004 29.8 10.9 111 57-175 528-648 (1960)
396 PRK14962 DNA polymerase III su 54.3 29 0.00063 29.6 5.0 17 56-72 115-131 (472)
397 PRK10590 ATP-dependent RNA hel 54.2 35 0.00076 28.8 5.5 48 11-64 268-319 (456)
398 PRK15483 type III restriction- 53.7 15 0.00033 34.1 3.4 63 34-101 162-240 (986)
399 PRK06921 hypothetical protein; 53.7 23 0.00049 27.6 4.0 89 13-102 117-227 (266)
400 COG0497 RecN ATPase involved i 53.7 18 0.00039 31.4 3.6 85 58-151 453-537 (557)
401 KOG3128|consensus 53.5 94 0.002 24.3 7.0 36 34-70 13-48 (298)
402 PRK05707 DNA polymerase III su 53.4 43 0.00093 27.0 5.6 63 34-97 71-144 (328)
403 TIGR02881 spore_V_K stage V sp 53.2 37 0.00081 26.2 5.1 28 60-87 107-138 (261)
404 PRK13889 conjugal transfer rel 53.1 49 0.0011 31.1 6.5 39 56-98 431-470 (988)
405 PRK07276 DNA polymerase III su 53.1 44 0.00095 26.5 5.5 63 34-98 71-143 (290)
406 PF13167 GTP-bdg_N: GTP-bindin 53.1 27 0.00059 22.7 3.6 33 164-196 44-76 (95)
407 KOG1002|consensus 53.0 39 0.00084 29.2 5.3 82 13-99 258-354 (791)
408 PRK01222 N-(5'-phosphoribosyl) 52.8 73 0.0016 23.8 6.5 49 141-191 43-91 (210)
409 TIGR02181 GRX_bact Glutaredoxi 52.7 32 0.0007 20.8 3.9 37 158-194 3-40 (79)
410 COG1054 Predicted sulfurtransf 52.2 48 0.001 26.4 5.4 36 153-188 172-208 (308)
411 PRK14701 reverse gyrase; Provi 52.1 32 0.00069 34.2 5.4 43 153-195 122-170 (1638)
412 PRK06645 DNA polymerase III su 51.8 37 0.00081 29.2 5.3 17 56-72 126-142 (507)
413 PRK07878 molybdopterin biosynt 51.7 21 0.00045 29.6 3.7 38 153-190 343-381 (392)
414 KOG0352|consensus 51.4 12 0.00026 31.4 2.2 42 155-196 63-104 (641)
415 PRK13826 Dtr system oriT relax 51.4 46 0.001 31.6 6.1 39 56-98 466-505 (1102)
416 PRK05600 thiamine biosynthesis 51.3 25 0.00054 28.9 4.0 34 155-188 334-369 (370)
417 PRK12898 secA preprotein trans 51.1 24 0.00052 31.4 4.1 59 137-195 126-190 (656)
418 PF09413 DUF2007: Domain of un 50.7 23 0.0005 20.8 2.9 31 156-186 2-32 (67)
419 PLN02723 3-mercaptopyruvate su 50.6 20 0.00044 28.7 3.4 37 153-189 269-306 (320)
420 cd06280 PBP1_LacI_like_4 Ligan 50.5 36 0.00078 25.7 4.7 38 142-179 160-197 (263)
421 COG0513 SrmB Superfamily II DN 50.2 44 0.00096 28.8 5.5 39 156-194 102-145 (513)
422 PF11823 DUF3343: Protein of u 50.1 36 0.00078 20.6 3.8 27 155-181 3-29 (73)
423 cd00860 ThrRS_anticodon ThrRS 50.0 52 0.0011 20.2 4.7 13 173-185 47-59 (91)
424 KOG0991|consensus 50.0 19 0.00041 27.9 2.9 38 57-95 112-149 (333)
425 PRK04537 ATP-dependent RNA hel 49.6 29 0.00063 30.3 4.4 41 154-194 85-129 (572)
426 PRK06090 DNA polymerase III su 49.6 58 0.0012 26.3 5.8 64 34-98 73-147 (319)
427 cd06311 PBP1_ABC_sugar_binding 49.5 64 0.0014 24.5 6.0 53 143-195 174-228 (274)
428 KOG1133|consensus 49.3 8.5 0.00018 34.1 1.1 58 8-72 304-362 (821)
429 KOG0953|consensus 49.3 68 0.0015 28.1 6.2 96 12-114 381-488 (700)
430 PRK07993 DNA polymerase III su 49.1 59 0.0013 26.3 5.8 62 34-97 73-146 (334)
431 KOG0741|consensus 48.8 37 0.00081 29.6 4.7 93 11-104 536-654 (744)
432 COG3973 Superfamily I DNA and 48.6 66 0.0014 28.5 6.1 36 141-176 642-678 (747)
433 TIGR00696 wecB_tagA_cpsF bacte 48.5 66 0.0014 23.4 5.5 53 142-194 37-91 (177)
434 PHA03372 DNA packaging termina 48.3 31 0.00066 30.5 4.2 42 55-100 296-338 (668)
435 KOG0339|consensus 48.3 36 0.00079 29.4 4.5 41 154-194 296-341 (731)
436 PRK14955 DNA polymerase III su 48.2 32 0.0007 28.5 4.3 17 56-72 125-141 (397)
437 PTZ00110 helicase; Provisional 48.0 44 0.00096 29.0 5.2 48 11-64 400-451 (545)
438 PF04364 DNA_pol3_chi: DNA pol 47.8 26 0.00057 24.3 3.2 44 133-176 6-52 (137)
439 PTZ00424 helicase 45; Provisio 47.6 44 0.00096 27.3 5.1 49 11-65 290-342 (401)
440 PRK14971 DNA polymerase III su 47.3 28 0.00062 30.7 4.0 41 56-98 119-159 (614)
441 PRK05563 DNA polymerase III su 47.2 41 0.00088 29.4 4.9 17 56-72 117-133 (559)
442 PRK07411 hypothetical protein; 47.2 26 0.00055 29.1 3.5 40 153-192 342-381 (390)
443 TIGR02169 SMC_prok_A chromosom 46.8 18 0.0004 34.0 3.0 42 57-98 1095-1136(1164)
444 PF01637 Arch_ATPase: Archaeal 46.8 27 0.00059 25.7 3.4 40 60-99 120-165 (234)
445 PRK14953 DNA polymerase III su 46.7 32 0.0007 29.4 4.1 17 56-72 117-133 (486)
446 TIGR01970 DEAH_box_HrpB ATP-de 46.4 39 0.00085 31.0 4.8 47 11-63 235-285 (819)
447 COG3587 Restriction endonuclea 46.3 19 0.00042 32.8 2.8 39 61-104 208-247 (985)
448 PRK11493 sseA 3-mercaptopyruva 46.2 49 0.0011 25.9 4.9 51 139-189 72-125 (281)
449 PRK08699 DNA polymerase III su 46.1 1E+02 0.0023 24.8 6.8 41 56-97 111-151 (325)
450 PF10740 DUF2529: Protein of u 45.7 24 0.00053 25.6 2.8 31 154-184 83-115 (172)
451 CHL00181 cbbX CbbX; Provisiona 45.4 58 0.0013 25.7 5.2 46 60-105 124-175 (287)
452 PF13245 AAA_19: Part of AAA d 45.1 39 0.00085 20.7 3.4 32 153-185 42-74 (76)
453 KOG1015|consensus 45.1 26 0.00057 32.7 3.4 45 57-103 820-864 (1567)
454 cd03278 ABC_SMC_barmotin Barmo 45.1 28 0.0006 25.7 3.2 41 57-97 134-174 (197)
455 COG0514 RecQ Superfamily II DN 45.0 26 0.00056 30.8 3.3 44 153-196 57-100 (590)
456 KOG2501|consensus 45.0 95 0.0021 22.2 5.6 38 139-176 52-90 (157)
457 PF00270 DEAD: DEAD/DEAH box h 45.0 91 0.002 21.6 5.8 37 154-190 45-85 (169)
458 TIGR03346 chaperone_ClpB ATP-d 44.9 34 0.00073 31.5 4.2 46 58-103 266-314 (852)
459 PRK06646 DNA polymerase III su 44.7 53 0.0012 23.4 4.4 45 132-176 5-52 (154)
460 PF08704 GCD14: tRNA methyltra 44.7 47 0.001 25.7 4.4 103 74-178 50-164 (247)
461 cd00046 DEXDc DEAD-like helica 44.2 82 0.0018 20.4 5.3 39 153-191 30-71 (144)
462 cd06353 PBP1_BmpA_Med_like Per 44.0 68 0.0015 24.7 5.3 162 12-184 31-207 (258)
463 PF10100 DUF2338: Uncharacteri 44.0 71 0.0015 26.7 5.5 106 77-192 94-208 (429)
464 cd06287 PBP1_LacI_like_8 Ligan 43.7 51 0.0011 25.3 4.6 38 142-179 166-203 (269)
465 TIGR01054 rgy reverse gyrase. 43.6 39 0.00085 32.4 4.5 43 152-194 120-169 (1171)
466 COG1110 Reverse gyrase [DNA re 43.6 33 0.00071 32.2 3.8 46 151-196 123-174 (1187)
467 cd05212 NAD_bind_m-THF_DH_Cycl 43.6 87 0.0019 21.8 5.3 46 143-188 13-63 (140)
468 PRK10865 protein disaggregatio 43.6 35 0.00077 31.5 4.1 44 60-103 273-319 (857)
469 TIGR03190 benz_CoA_bzdN benzoy 43.5 85 0.0018 25.8 6.0 55 139-194 299-359 (377)
470 PRK14950 DNA polymerase III su 43.4 36 0.00077 29.9 4.0 17 56-72 118-134 (585)
471 COG1134 TagH ABC-type polysacc 43.3 68 0.0015 24.8 5.0 57 57-118 164-221 (249)
472 PRK11634 ATP-dependent RNA hel 43.3 38 0.00082 30.1 4.2 39 154-192 75-118 (629)
473 PF01276 OKR_DC_1: Orn/Lys/Arg 43.2 49 0.0011 27.8 4.5 39 25-69 154-207 (417)
474 PRK11776 ATP-dependent RNA hel 43.2 38 0.00083 28.5 4.1 40 154-193 73-117 (460)
475 KOG1803|consensus 43.1 30 0.00064 30.4 3.3 36 33-72 337-372 (649)
476 PLN02363 phosphoribosylanthran 42.8 1.2E+02 0.0025 23.7 6.3 51 140-192 86-137 (256)
477 cd06533 Glyco_transf_WecG_TagA 42.7 84 0.0018 22.6 5.3 54 139-192 32-88 (171)
478 PRK15327 type III secretion sy 42.6 1.1E+02 0.0025 25.4 6.5 62 132-196 161-235 (393)
479 PRK11664 ATP-dependent RNA hel 42.6 53 0.0011 30.2 5.0 48 10-63 237-288 (812)
480 KOG0389|consensus 42.5 60 0.0013 29.6 5.1 58 140-197 761-821 (941)
481 TIGR01244 conserved hypothetic 42.4 64 0.0014 22.2 4.5 35 139-173 72-106 (135)
482 KOG0996|consensus 42.4 28 0.0006 32.9 3.2 83 28-112 1172-1269(1293)
483 cd03273 ABC_SMC2_euk Eukaryoti 42.3 31 0.00066 26.4 3.1 42 57-98 187-228 (251)
484 cd03240 ABC_Rad50 The catalyti 42.3 32 0.0007 25.5 3.2 43 56-98 137-182 (204)
485 KOG0388|consensus 42.3 46 0.001 30.1 4.4 95 5-105 636-740 (1185)
486 cd01132 F1_ATPase_alpha F1 ATP 42.3 74 0.0016 25.1 5.2 49 142-190 112-173 (274)
487 PRK04837 ATP-dependent RNA hel 41.8 46 0.00099 27.7 4.3 39 154-192 84-126 (423)
488 PF03129 HGTP_anticodon: Antic 41.8 65 0.0014 20.1 4.2 28 164-191 16-43 (94)
489 cd02066 GRX_family Glutaredoxi 41.7 67 0.0015 18.3 4.8 21 161-181 8-28 (72)
490 PRK09281 F0F1 ATP synthase sub 41.3 81 0.0018 27.2 5.7 38 154-191 219-267 (502)
491 KOG0388|consensus 41.2 49 0.0011 30.0 4.3 54 142-195 1033-1086(1185)
492 PRK10423 transcriptional repre 41.1 55 0.0012 25.7 4.5 38 142-179 223-260 (327)
493 KOG0340|consensus 41.1 34 0.00074 28.1 3.2 37 156-192 78-118 (442)
494 PLN02723 3-mercaptopyruvate su 40.7 69 0.0015 25.7 5.0 53 137-189 86-141 (320)
495 PRK06581 DNA polymerase III su 40.7 93 0.002 24.3 5.3 63 34-97 50-127 (263)
496 KOG0338|consensus 40.5 77 0.0017 27.5 5.3 42 155-196 254-299 (691)
497 PRK06305 DNA polymerase III su 40.5 35 0.00076 28.9 3.4 38 57-95 120-157 (451)
498 KOG2036|consensus 40.4 38 0.00081 30.5 3.6 36 56-100 377-412 (1011)
499 cd03274 ABC_SMC4_euk Eukaryoti 40.4 31 0.00068 25.8 2.8 39 58-96 149-187 (212)
500 PTZ00112 origin recognition co 40.4 74 0.0016 29.9 5.4 40 58-98 869-909 (1164)
No 1
>KOG0328|consensus
Probab=100.00 E-value=1.1e-37 Score=233.64 Aligned_cols=188 Identities=24% Similarity=0.407 Sum_probs=179.2
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
+.|+.|..+.||.+.-+..+.+.-|.|++.+|||++++++++..+..+.++++|+||||.+++.+|.+++-.|.+++|++
T Consensus 121 ~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~ 200 (400)
T KOG0328|consen 121 YMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPG 200 (400)
T ss_pred cccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc-hhhHHHHHHHhhcCC-CCEEEEecccccHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ-EAKIVYLLECLQKTE-PPVLIFAEKKQDVD 167 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~ 167 (197)
.|++++|||+|.++.++.+.|+.+|+.+-+.......++++|+|+.+.. ++|++.|+++..... .+++|||||++.++
T Consensus 201 ~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVd 280 (400)
T KOG0328|consen 201 AQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVD 280 (400)
T ss_pred ceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhh
Confidence 9999999999999999999999999999999999999999999999865 559999999998764 58999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+|.+.|++.++.+...||+|++++|+++++
T Consensus 281 wLtekm~~~nftVssmHGDm~qkERd~im~ 310 (400)
T KOG0328|consen 281 WLTEKMREANFTVSSMHGDMEQKERDKIMN 310 (400)
T ss_pred HHHHHHHhhCceeeeccCCcchhHHHHHHH
Confidence 999999999999999999999999999875
No 2
>KOG0330|consensus
Probab=100.00 E-value=6.1e-38 Score=243.51 Aligned_cols=187 Identities=32% Similarity=0.457 Sum_probs=179.1
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHh-cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLD-KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG 88 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~-~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~ 88 (197)
+.|++++.+.||.++..|...+.+.|||+|||||+|.+.+. .+.++++.++++|+||||.+++..|.+.+..|++.+|.
T Consensus 155 ~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~ 234 (476)
T KOG0330|consen 155 GIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR 234 (476)
T ss_pred ccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc
Confidence 46999999999999999999999999999999999999998 67899999999999999999999999999999999999
Q ss_pred CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHH
Q psy7789 89 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVD 167 (197)
Q Consensus 89 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~ 167 (197)
.+|+++||||++..+.......+.+|..+.+...+...+.++|.|.+++..+|..+|++++++.. ..+||||+|..+++
T Consensus 235 erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~ 314 (476)
T KOG0330|consen 235 ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTR 314 (476)
T ss_pred cceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874 58999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+++-.|+..|+.+..+||.|+++.|...+
T Consensus 315 ~la~~L~~lg~~a~~LhGqmsq~~Rlg~l 343 (476)
T KOG0330|consen 315 FLALLLRNLGFQAIPLHGQMSQSKRLGAL 343 (476)
T ss_pred HHHHHHHhcCcceecccchhhHHHHHHHH
Confidence 99999999999999999999999998664
No 3
>KOG0331|consensus
Probab=100.00 E-value=5e-37 Score=250.11 Aligned_cols=186 Identities=39% Similarity=0.595 Sum_probs=172.8
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc-cCCc
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF-RGQR 90 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~ 90 (197)
++++.+++||.+...|.+.++.+.||+|||||+|.++++.+.++++++.|+|+||||.|++.+|.++++.|+..+ ++..
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999999 5667
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCC--CccCcceeEEEEEcCchhhHHHHHHHhhcC----CCCEEEEecccc
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRA--GAASMNVVQEVEYVKQEAKIVYLLECLQKT----EPPVLIFAEKKQ 164 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~----~~~~lIF~~s~~ 164 (197)
|++++|||||.+++.++..|+.+|..+.+... .....++.|....|.+..|...|..+|+.. .+|+||||+|++
T Consensus 273 Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 273 QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchh
Confidence 99999999999999999999999999988744 366778899888889888988888888754 358999999999
Q ss_pred cHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 165 DVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.|++|+..|+..++++.++||+.+|+||+.+++
T Consensus 353 ~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~ 385 (519)
T KOG0331|consen 353 TCDELARNLRRKGWPAVAIHGDKSQSERDWVLK 385 (519)
T ss_pred hHHHHHHHHHhcCcceeeecccccHHHHHHHHH
Confidence 999999999999999999999999999998864
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-36 Score=251.72 Aligned_cols=185 Identities=34% Similarity=0.534 Sum_probs=175.3
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
+++++.++||.++..|...++.++||+|||||||++++.++.+++++++++|+||||.|++.||.+.+..|+..+|.+.|
T Consensus 128 ~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~q 207 (513)
T COG0513 128 GLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQ 207 (513)
T ss_pred CccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccE
Confidence 78999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHhcCCCeEEEeCCCCc--cCcceeEEEEEcCchh-hHHHHHHHhhcCCC-CEEEEecccccHH
Q psy7789 92 TLLFSATMPKKIQNFARSALVKPITINVGRAGA--ASMNVVQEVEYVKQEA-KIVYLLECLQKTEP-PVLIFAEKKQDVD 167 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~-~~lIF~~s~~~~~ 167 (197)
+++||||++.++..+.+.++++|..+.+..... ....+.|+++.+...+ |...|..+++.... ++||||+|++.|+
T Consensus 208 tllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~ 287 (513)
T COG0513 208 TLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVE 287 (513)
T ss_pred EEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 999999999999999999999999888875554 7899999999998866 99999999997754 6999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.++..|...|+++..+||+|+|++|++++
T Consensus 288 ~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 288 ELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred HHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999875
No 5
>KOG0333|consensus
Probab=100.00 E-value=1.2e-33 Score=226.60 Aligned_cols=188 Identities=38% Similarity=0.672 Sum_probs=178.5
Q ss_pred CCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC
Q psy7789 9 LPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG 88 (197)
Q Consensus 9 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~ 88 (197)
.++|+++..++||.+.++|.-.++.||+|+||||++|.+.+.+..+-++++.+||+||||.+++.||.+++..++.++|.
T Consensus 347 ~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPs 426 (673)
T KOG0333|consen 347 KPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPS 426 (673)
T ss_pred ccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred C-------------------------ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHH
Q psy7789 89 Q-------------------------RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIV 143 (197)
Q Consensus 89 ~-------------------------~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 143 (197)
. +|+++||||+++.+..+++.|+++|.++.++......+.+.|.++.+.+.+|..
T Consensus 427 sn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~k 506 (673)
T KOG0333|consen 427 SNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRK 506 (673)
T ss_pred cccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHH
Confidence 1 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 144 YLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 144 ~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|.+++... .+++|||+|+++.|+.+|+.|.+.|++|..+||+-++++|+.++
T Consensus 507 kL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 507 KLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred HHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 999999987 67999999999999999999999999999999999999999765
No 6
>KOG0326|consensus
Probab=100.00 E-value=5.2e-34 Score=217.13 Aligned_cols=185 Identities=24% Similarity=0.463 Sum_probs=174.2
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
+.|+++..-+||.+.++....+.++.|++|+||||+++++.++.-.+++...+|+||||.+++..|.+.+..++..+|++
T Consensus 179 h~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~ 258 (459)
T KOG0326|consen 179 HLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKE 258 (459)
T ss_pred ccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDA 168 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~ 168 (197)
+|++++|||+|-.+..+..+++.+|-.|.+-+ +..+.+++|+|-++.+.+|+--|.-+....+ .+.||||||..++|.
T Consensus 259 rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVEL 337 (459)
T KOG0326|consen 259 RQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVEL 337 (459)
T ss_pred ceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHH
Confidence 99999999999999999999999999998874 4456789999999999999998888887664 589999999999999
Q ss_pred HHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 169 IHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 169 l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
+|....+.||+|+++|+.|.++.|.+|
T Consensus 338 LAkKITelGyscyyiHakM~Q~hRNrV 364 (459)
T KOG0326|consen 338 LAKKITELGYSCYYIHAKMAQEHRNRV 364 (459)
T ss_pred HHHHHHhccchhhHHHHHHHHhhhhhh
Confidence 999999999999999999999999886
No 7
>KOG0339|consensus
Probab=100.00 E-value=6.6e-33 Score=221.86 Aligned_cols=186 Identities=40% Similarity=0.575 Sum_probs=175.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.||+++.++||.+..+|...|+.+|.|||||||||.+++.-+..++.++.|||+||||+|++.||..+++.|.+.+++++
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdr 402 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDR 402 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC-chhhHHHHHHHhhcCC--CCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKTE--PPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~--~~~lIF~~s~~~~~ 167 (197)
|+++||||++..+...++.++.+|+.+...+.......|+|.+..|+ ++.|+.+|...|-... +++|||+.....++
T Consensus 403 QtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e 482 (731)
T KOG0339|consen 403 QTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAE 482 (731)
T ss_pred eEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHH
Confidence 99999999999999999999999999999888888888999877775 5678999999888764 59999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+++..|+-.|+++..+||+|.|.+|.+++
T Consensus 483 ~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 483 EIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred HHHHHhccccceeeeecCchhhHHHHHHH
Confidence 99999999999999999999999999875
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.9e-32 Score=225.13 Aligned_cols=185 Identities=29% Similarity=0.486 Sum_probs=171.2
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++++..++||.+...+.+.+..+++|+|+||+++.+++.++.+.++++++||+||||++++.+|...+..+++.+++..|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q 180 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQ 180 (460)
T ss_pred CcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccE
Confidence 79999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHHHH
Q psy7789 92 TLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIH 170 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~ 170 (197)
++++|||+++.+..+...++++|..+.+.... ....+.+.++.+...+|...+..++.... .++||||+|++.|+.++
T Consensus 181 ~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 181 TLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred EEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHH
Confidence 99999999999999999999999988886554 34558888888888889999999998654 57999999999999999
Q ss_pred HHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 171 EYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 171 ~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+.|.+.|+++..+||+|++++|+++++
T Consensus 260 ~~L~~~~~~v~~~hg~~~~~eR~~~l~ 286 (460)
T PRK11776 260 DALNAQGFSALALHGDLEQRDRDQVLV 286 (460)
T ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 999999999999999999999998863
No 9
>KOG0345|consensus
Probab=100.00 E-value=1.7e-32 Score=217.54 Aligned_cols=194 Identities=29% Similarity=0.516 Sum_probs=175.9
Q ss_pred CccccccCCCCeeEEEEEcCCChHHhHHHHh-cCCcEEEeCchHHHHHHhcC--CccCCCccEEEeehhhhhhcCCCHHH
Q psy7789 2 GIPFISALPIPLRTCLAIGGVPMNQSLDVIK-KGCHMMVATPGRLMDMLDKK--MVSLDVCRYLCLDEADRMVDMGFEED 78 (197)
Q Consensus 2 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~Ili~TP~~l~~~l~~~--~~~l~~l~~vViDEad~l~~~~~~~~ 78 (197)
+++|.+.+. ++++.+++||.+.++..+.+. ++|.|+|||||||.+++.+. .+++++++++|+||||++++.||..+
T Consensus 99 ~~~F~~~l~-~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~ 177 (567)
T KOG0345|consen 99 AQPFLEHLP-NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEAS 177 (567)
T ss_pred HHHHHHhhh-ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHH
Confidence 356777764 799999999999999998884 58999999999999999874 45567999999999999999999999
Q ss_pred HHHHHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCc--cCcceeEEEEEcCchhhHHHHHHHhhcCC-CC
Q psy7789 79 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGA--ASMNVVQEVEYVKQEAKIVYLLECLQKTE-PP 155 (197)
Q Consensus 79 i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~ 155 (197)
+..|+..+|+.+++.+||||.+.++.+..+..++||+.+.+..... .+..+..+|..|...+|...++++|.... ++
T Consensus 178 ~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK 257 (567)
T KOG0345|consen 178 VNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKK 257 (567)
T ss_pred HHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999987665 77778889999999999999999999864 68
Q ss_pred EEEEecccccHHHHHHHHHhC--CCCeEeecCCCChhhhhhhh
Q psy7789 156 VLIFAEKKQDVDAIHEYLLLK--GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~ 196 (197)
+|||++|+..++..+..+... ..++..+||.|++.+|.++.
T Consensus 258 ~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~ 300 (567)
T KOG0345|consen 258 CIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVL 300 (567)
T ss_pred EEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHH
Confidence 999999999999999999765 67899999999999998764
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.7e-31 Score=227.43 Aligned_cols=186 Identities=28% Similarity=0.362 Sum_probs=174.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+.+.+.+.+..+++|+|+||+++.+++.+..++++++++||+||||.+++++|.+.+..++..+|...
T Consensus 102 ~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~ 181 (629)
T PRK11634 102 RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 (629)
T ss_pred CCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCC
Confidence 37999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAI 169 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l 169 (197)
|+++||||+++.+..+...++.+|..+.+.......+.+.+.++.+....|...|..++.... .++||||+|+..|+.+
T Consensus 182 q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred eEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 999999999999999999999999998888777777788999998888899999999998654 5899999999999999
Q ss_pred HHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 170 HEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 170 ~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
++.|.+.|+.+..+||+|++++|++++
T Consensus 262 ~~~L~~~g~~~~~lhgd~~q~~R~~il 288 (629)
T PRK11634 262 AEALERNGYNSAALNGDMNQALREQTL 288 (629)
T ss_pred HHHHHhCCCCEEEeeCCCCHHHHHHHH
Confidence 999999999999999999999999876
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.8e-31 Score=224.92 Aligned_cols=186 Identities=38% Similarity=0.594 Sum_probs=167.4
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+...+...+..+++|+|+||++|.+++.....+++++++||+||||++++++|..++..|+..+++++
T Consensus 230 ~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCC
Confidence 36899999999999989888999999999999999999998888999999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcC-CCeEEEeCCCC-ccCcceeEEEEEcCchhhHHHHHHHhhcC---CCCEEEEeccccc
Q psy7789 91 QTLLFSATMPKKIQNFARSALV-KPITINVGRAG-AASMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQD 165 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~ 165 (197)
|++++|||+++++..+.+.++. +++.+.+.... .....+.+.+..+.+.+|...|.+++... ..++||||+|++.
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~ 389 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKG 389 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHH
Confidence 9999999999999999988886 57777776443 34467888888888888888888888753 4689999999999
Q ss_pred HHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 166 VDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|+.++..|+..|+++..+||+|++++|++++
T Consensus 390 a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 390 ADFLTKELRLDGWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred HHHHHHHHHHcCCcEEEEECCCcHHHHHHHH
Confidence 9999999999999999999999999999876
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-31 Score=218.54 Aligned_cols=186 Identities=27% Similarity=0.431 Sum_probs=170.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC--
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-- 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-- 88 (197)
.|+++..++||.+...+.+.+.+++||+|+||++|.+++.++.+++++++++|+||||++++++|...+..+++.++.
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~ 189 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN 189 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc
Confidence 479999999999999898889889999999999999999988899999999999999999999999999999999975
Q ss_pred CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC-CCCEEEEecccccHH
Q psy7789 89 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVD 167 (197)
Q Consensus 89 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~ 167 (197)
..|.+++|||++..+......++.+|..+.+.........+.+.+.+...++|...+.+++... ..++||||+++..|+
T Consensus 190 ~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~ 269 (423)
T PRK04837 190 QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCE 269 (423)
T ss_pred ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 5678999999999999999999999999888777766777888888888888999999998765 468999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.|+..|+++..+||+|++++|.+++
T Consensus 270 ~l~~~L~~~g~~v~~lhg~~~~~~R~~~l 298 (423)
T PRK04837 270 EIWGHLAADGHRVGLLTGDVAQKKRLRIL 298 (423)
T ss_pred HHHHHHHhCCCcEEEecCCCChhHHHHHH
Confidence 99999999999999999999999999876
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.5e-31 Score=218.96 Aligned_cols=187 Identities=34% Similarity=0.535 Sum_probs=171.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+.+.+...+.+++||+|+||++|++++.+..++++++++||+||||++++++|...+..++..++...
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~ 181 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccC
Confidence 46899999999999988888888999999999999999998888999999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAI 169 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l 169 (197)
|++++|||+++++..+...++.+|..+.+.........+.+.+..+....|...+..++.... .++||||+|+..|+.+
T Consensus 182 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l 261 (456)
T PRK10590 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHL 261 (456)
T ss_pred eEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHH
Confidence 999999999999999999999999988887766667788888888888888888888887654 5899999999999999
Q ss_pred HHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 170 HEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 170 ~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
++.|.+.|+++..+||+|++++|.++++
T Consensus 262 ~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 262 AEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 9999999999999999999999998763
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=7.6e-31 Score=222.04 Aligned_cols=187 Identities=30% Similarity=0.498 Sum_probs=169.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC-CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK-MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG- 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~-~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~- 88 (197)
.++++..++||.+...+.+.+.+++||+|+||++|++++.+. .+.++.+++||+||||.+++++|...+..+++.++.
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~ 190 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc
Confidence 479999999999999998888888999999999999998764 577899999999999999999999999999999987
Q ss_pred -CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC-CCCEEEEecccccH
Q psy7789 89 -QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDV 166 (197)
Q Consensus 89 -~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~ 166 (197)
..|+++||||++..+......++.+|..+.+.........+.+.++.+...+|...+..++... ..++||||||+..|
T Consensus 191 ~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~a 270 (572)
T PRK04537 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFV 270 (572)
T ss_pred cCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHH
Confidence 7899999999999999999999999887777666666677888888888888999999998865 45899999999999
Q ss_pred HHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 167 DAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 167 ~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+.+++.|.+.|+++..+||+|++.+|+++++
T Consensus 271 e~l~~~L~~~g~~v~~lhg~l~~~eR~~il~ 301 (572)
T PRK04537 271 ERVARTLERHGYRVGVLSGDVPQKKRESLLN 301 (572)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 9999999999999999999999999998863
No 15
>KOG0338|consensus
Probab=99.98 E-value=5.1e-32 Score=216.85 Aligned_cols=186 Identities=27% Similarity=0.422 Sum_probs=171.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
..|.+++++||.+...|...|..+|||+|+|||++.+.+.+ ..++++++..+|+||||+|++.+|.+++..|++.+|++
T Consensus 279 t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~ 358 (691)
T KOG0338|consen 279 TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKN 358 (691)
T ss_pred ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhcccc
Confidence 36999999999999999999999999999999999999986 47899999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC---chhhHHHHHHHhhc-CCCCEEEEeccccc
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK---QEAKIVYLLECLQK-TEPPVLIFAEKKQD 165 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~~~l~~-~~~~~lIF~~s~~~ 165 (197)
+|+++||||++.++.+.+...++.|+.+.+.+.......+.|.|+.+. +..+-..+..++.. .+.+++||+.|++.
T Consensus 359 RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~ 438 (691)
T KOG0338|consen 359 RQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQ 438 (691)
T ss_pred ccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHH
Confidence 999999999999999999999999999999998888899999888774 45577777777764 46789999999999
Q ss_pred HHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 166 VDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|..+.-+|=-.|.++.-+||.|+|++|-+.+
T Consensus 439 AHRl~IllGLlgl~agElHGsLtQ~QRlesL 469 (691)
T KOG0338|consen 439 AHRLRILLGLLGLKAGELHGSLTQEQRLESL 469 (691)
T ss_pred HHHHHHHHHHhhchhhhhcccccHHHHHHHH
Confidence 9999999989999999999999999997654
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.97 E-value=2.7e-30 Score=216.97 Aligned_cols=186 Identities=31% Similarity=0.530 Sum_probs=168.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+...+...+..+++|+|+||++|.+++.+....++++++||+||||++++++|+..+..++..++ ++
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~ 301 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QP 301 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CC
Confidence 46899999999999989888888999999999999999998888999999999999999999999999999998884 78
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC---CCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~ 167 (197)
|++++|||+++++..+...++.++..+.+.........+.+.+..+....|...+.+++... .+++||||+|+..|+
T Consensus 302 q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~ 381 (518)
T PLN00206 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGAD 381 (518)
T ss_pred cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHH
Confidence 99999999999999999999999999988777666677888888888888888888888753 368999999999999
Q ss_pred HHHHHHHh-CCCCeEeecCCCChhhhhhhhC
Q psy7789 168 AIHEYLLL-KGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 168 ~l~~~L~~-~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.+++.|.. .|+++..+||+|++++|+++++
T Consensus 382 ~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~ 412 (518)
T PLN00206 382 LLANAITVVTGLKALSIHGEKSMKERREVMK 412 (518)
T ss_pred HHHHHHhhccCcceEEeeCCCCHHHHHHHHH
Confidence 99999985 5999999999999999998863
No 17
>KOG0341|consensus
Probab=99.97 E-value=2.5e-32 Score=212.73 Aligned_cols=185 Identities=73% Similarity=1.149 Sum_probs=178.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
..+|++++.||.+..+|.+.++.|.||+|+|||+|.+++.++..+++-++|+++||||++++.||.+.++.|+..+...+
T Consensus 279 P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR 358 (610)
T KOG0341|consen 279 PELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR 358 (610)
T ss_pred hhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIH 170 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~ 170 (197)
|+++||||+|..++.+++..+-.|+.+.+......+-++.|.+.++..+.|.-+|++-|+...+|+||||..+.++..+.
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~Ih 438 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIH 438 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHH
Confidence 99999999999999999999999999999988888888999889999999999999999999999999999999999999
Q ss_pred HHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 171 EYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 171 ~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
++|.-.|+.+..+|||-.+++|..-
T Consensus 439 EYLLlKGVEavaIHGGKDQedR~~a 463 (610)
T KOG0341|consen 439 EYLLLKGVEAVAIHGGKDQEDRHYA 463 (610)
T ss_pred HHHHHccceeEEeecCcchhHHHHH
Confidence 9999999999999999999999753
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=7.4e-30 Score=210.76 Aligned_cols=186 Identities=27% Similarity=0.391 Sum_probs=168.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+...+.+.+.++++|+|+||++|++++.+..++++++++||+||||++++++|...+..+...++...
T Consensus 100 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~ 179 (434)
T PRK11192 100 THLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRK 179 (434)
T ss_pred CCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcccc
Confidence 47899999999999999888888999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEEEeecCCh-hHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc-hhhHHHHHHHhhcC-CCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPK-KIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ-EAKIVYLLECLQKT-EPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~ 167 (197)
|+++||||++. .+..+...++.+|..+...........+.+.++.+.. +.|...+..+++.. ..++||||+|++.|+
T Consensus 180 q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~ 259 (434)
T PRK11192 180 QTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVH 259 (434)
T ss_pred EEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHH
Confidence 99999999985 4788888899999998887777767778887777754 67888888888864 468999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.|++.|+++..+||+|++.+|.+++
T Consensus 260 ~l~~~L~~~~~~~~~l~g~~~~~~R~~~l 288 (434)
T PRK11192 260 ELAGWLRKAGINCCYLEGEMVQAKRNEAI 288 (434)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999875
No 19
>KOG0343|consensus
Probab=99.97 E-value=1.4e-30 Score=210.31 Aligned_cols=184 Identities=30% Similarity=0.453 Sum_probs=169.9
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
+..+.++.||.+...+.+.+++ ..|+|||||||+..+.. ..++..++.++|+||||++++.||...+..|+.++|+.+
T Consensus 169 ~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~R 247 (758)
T KOG0343|consen 169 DFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR 247 (758)
T ss_pred ccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhh
Confidence 6888999999998888888876 89999999999998864 578899999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeC--CCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVG--RAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~ 167 (197)
|+++||||-+..+...++..+++|..|.+. .....|.++.|+|+.++.++|+..|+.+++.+. .++|||++|++.+.
T Consensus 248 QTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvk 327 (758)
T KOG0343|consen 248 QTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVK 327 (758)
T ss_pred eeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHH
Confidence 999999999999999999999999877765 446788999999999999999999999999885 48999999999999
Q ss_pred HHHHHHHhC--CCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLK--GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.+... |+++.++||.|+|..|.++-
T Consensus 328 f~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~ 358 (758)
T KOG0343|consen 328 FLYEAFCRLRPGIPLLALHGTMSQKKRIEVY 358 (758)
T ss_pred HHHHHHHhcCCCCceeeeccchhHHHHHHHH
Confidence 999999877 89999999999999998763
No 20
>KOG0327|consensus
Probab=99.97 E-value=3e-30 Score=200.50 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=173.6
Q ss_pred CCeeEEEEEcCCChHHhHHHH-hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI-KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l-~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
.+.++..++||.+...+-..+ ..+++|+++||+++.+++....+..+.++++|+||||.++..+|.+++..|.+.+|++
T Consensus 121 ~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~ 200 (397)
T KOG0327|consen 121 MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSD 200 (397)
T ss_pred cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcc
Confidence 468999999999988666555 4579999999999999999888889999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAI 169 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l 169 (197)
.|++++|||+++++....+.++++|+.+.+.........++|++..+..++|+..|.++.+ .-.+++|||||++.+.++
T Consensus 201 vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-~~~q~~if~nt~r~v~~l 279 (397)
T KOG0327|consen 201 VQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-RVTQAVIFCNTRRKVDNL 279 (397)
T ss_pred hhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-hhhcceEEecchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 556899999999999999
Q ss_pred HHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 170 HEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 170 ~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
..+|..+|..+.++||+|.+.+|+.++
T Consensus 280 ~~~L~~~~~~~s~~~~d~~q~~R~~~~ 306 (397)
T KOG0327|consen 280 TDKLRAHGFTVSAIHGDMEQNERDTLM 306 (397)
T ss_pred HHHHhhCCceEEEeecccchhhhhHHH
Confidence 999999999999999999999998765
No 21
>KOG0342|consensus
Probab=99.97 E-value=4.9e-30 Score=204.53 Aligned_cols=185 Identities=32% Similarity=0.518 Sum_probs=168.1
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC-CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK-MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~-~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
.++.+.+..||.+.....+.+..++.|+|+|||+|++.+++. .+-.++++++|+||||++++.||++.+..|++.+|..
T Consensus 182 ~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~ 261 (543)
T KOG0342|consen 182 ESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQ 261 (543)
T ss_pred CCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcccc
Confidence 378999999999999888889889999999999999999874 4567889999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcC-CCeEEEeCCCC--ccCcceeEEEEEcCchhhHHHHHHHhhcCC--CCEEEEecccc
Q psy7789 90 RQTLLFSATMPKKIQNFARSALV-KPITINVGRAG--AASMNVVQEVEYVKQEAKIVYLLECLQKTE--PPVLIFAEKKQ 164 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lIF~~s~~ 164 (197)
+|..+||||.++++.+.++..++ +|..+.+.+.. ...+.+.|-++.++...++-.+..+|+++. .+++|||+|..
T Consensus 262 rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~ 341 (543)
T KOG0342|consen 262 RQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCM 341 (543)
T ss_pred ceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhh
Confidence 99999999999999999999887 48888876544 566889998888888888999999998774 58999999999
Q ss_pred cHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 165 DVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+..++++|+....+|..+||+++|..|..+
T Consensus 342 ~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 342 SVKFHAELLNYIDLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred HHHHHHHHHhhcCCchhhhhcCCcccccchH
Confidence 9999999999999999999999999999765
No 22
>KOG0337|consensus
Probab=99.97 E-value=2.6e-30 Score=202.93 Aligned_cols=183 Identities=28% Similarity=0.449 Sum_probs=175.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++.+++||.++++|...+..+||||+|||+++.++.-.-.+.++.+.|||+||+|.+++.||.+++..++.++|.++
T Consensus 117 t~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~ 196 (529)
T KOG0337|consen 117 TKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESR 196 (529)
T ss_pred cchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcc
Confidence 47999999999999999999999999999999999999887788999999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCC--CEEEEecccccHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEP--PVLIFAEKKQDVDA 168 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~--~~lIF~~s~~~~~~ 168 (197)
|+++||||+|....++++.-+.+|..+.+.-+....+.+...+..+..++|..+|+.++....+ +++|||.|...++.
T Consensus 197 QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~ 276 (529)
T KOG0337|consen 197 QTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEY 276 (529)
T ss_pred eEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHH
Confidence 9999999999999999999999999999988888999999999999999999999999998754 89999999999999
Q ss_pred HHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 169 IHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 169 l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
+...|+..|+.+..++|.|.+..|.
T Consensus 277 ~~~ll~~~g~~~s~iysslD~~aRk 301 (529)
T KOG0337|consen 277 VRGLLRDFGGEGSDIYSSLDQEARK 301 (529)
T ss_pred HHHHHHhcCCCccccccccChHhhh
Confidence 9999999999999999999999987
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=1e-28 Score=206.00 Aligned_cols=187 Identities=32% Similarity=0.465 Sum_probs=168.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG- 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~- 88 (197)
.|+++..++||.+...+.+.+. ++++|+|+||++|+.++.+....++++++|||||||.+++++|...+..+++.++.
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 268 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK 268 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC
Confidence 4789999999999888887774 56999999999999999888888999999999999999999999999999999865
Q ss_pred -CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccH
Q psy7789 89 -QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDV 166 (197)
Q Consensus 89 -~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~ 166 (197)
+.|++++|||++.++......++.++..+.+.........+.+.++.+...+|...+.+++.... .++||||++++.|
T Consensus 269 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~ 348 (475)
T PRK01297 269 EERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEV 348 (475)
T ss_pred CCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 57999999999999999999999999988887777666778888888888888888888887654 5899999999999
Q ss_pred HHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 167 DAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 167 ~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+.+++.|.+.|+++..+||+|++++|.++++
T Consensus 349 ~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~ 379 (475)
T PRK01297 349 RRIEERLVKDGINAAQLSGDVPQHKRIKTLE 379 (475)
T ss_pred HHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 9999999999999999999999999988763
No 24
>KOG4284|consensus
Probab=99.97 E-value=7.2e-30 Score=209.42 Aligned_cols=185 Identities=21% Similarity=0.332 Sum_probs=170.8
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~ 89 (197)
.|.+|..++||.+.......++. ++|+||||||+..++..+.++.++++++|+||||.|++ ..|++++..|+..+|..
T Consensus 121 ~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~ 199 (980)
T KOG4284|consen 121 TGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQI 199 (980)
T ss_pred cCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchh
Confidence 68999999999998888777776 89999999999999999999999999999999999998 56999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc--------hhhHHHHHHHhhcCCC-CEEEEe
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ--------EAKIVYLLECLQKTEP-PVLIFA 160 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--------~~k~~~l~~~l~~~~~-~~lIF~ 160 (197)
+|+++||||.|..+.+....+|++|..+........+-+++|+++.++. +.|++.|-++.++.+- ++||||
T Consensus 200 rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~ 279 (980)
T KOG4284|consen 200 RQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFC 279 (980)
T ss_pred heeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhh
Confidence 9999999999999999999999999999999888888899999887754 3478888888888763 899999
Q ss_pred cccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 161 EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 161 ~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+...+|+-++..|+..|++|.+++|.|++.+|.-+.
T Consensus 280 ~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~ 315 (980)
T KOG4284|consen 280 DQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAV 315 (980)
T ss_pred hhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHH
Confidence 999999999999999999999999999999997653
No 25
>KOG0335|consensus
Probab=99.96 E-value=5.6e-29 Score=200.35 Aligned_cols=186 Identities=38% Similarity=0.648 Sum_probs=172.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccC-
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRG- 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~- 88 (197)
.+++++..+||.+...|.+.+..++||+|||||+|.+++..+.+.+.+++++|+||||.|++ .+|.++++.|+.....
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~ 258 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMP 258 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999 8999999999988743
Q ss_pred ---CceEEEEeecCChhHHHHHHHhcCC-CeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC-----CC-----
Q psy7789 89 ---QRQTLLFSATMPKKIQNFARSALVK-PITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT-----EP----- 154 (197)
Q Consensus 89 ---~~q~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-----~~----- 154 (197)
+.|.++||||++.++...+..++.+ .+.+.+......++++.|.+..+.+.+|...|+++|... .+
T Consensus 259 ~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e 338 (482)
T KOG0335|consen 259 PKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWE 338 (482)
T ss_pred CccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccc
Confidence 7899999999999999988888886 788888888888999999999999999999999999733 12
Q ss_pred CEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+++|||.|++.|..++.+|...++++..+||+-.+.+|++-+
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al 380 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQAL 380 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHH
Confidence 699999999999999999999999999999999999998764
No 26
>KOG0347|consensus
Probab=99.96 E-value=4.7e-30 Score=207.16 Aligned_cols=186 Identities=25% Similarity=0.362 Sum_probs=162.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc---cCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV---SLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR 87 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~---~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~ 87 (197)
.+|+++.++||.+...|.+.|+..|||+|||||||+.++..... ++++++++|+||+|+|++.|+.+.+..+++.+.
T Consensus 290 t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~ 369 (731)
T KOG0347|consen 290 TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLN 369 (731)
T ss_pred cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999986544 578999999999999999999999999988885
Q ss_pred -----CCceEEEEeecCCh-----------------h----HHHHHHH--hcCCCeEEEeCCCCccCcceeEEEEEcCch
Q psy7789 88 -----GQRQTLLFSATMPK-----------------K----IQNFARS--ALVKPITINVGRAGAASMNVVQEVEYVKQE 139 (197)
Q Consensus 88 -----~~~q~i~~SAT~~~-----------------~----~~~~~~~--~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~ 139 (197)
..+|+++||||++- + ++.+... +..+|..|++.+...+...+....+.|+..
T Consensus 370 e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~ 449 (731)
T KOG0347|consen 370 EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPL 449 (731)
T ss_pred hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCcc
Confidence 35699999999861 1 1122221 335778999988888888888888899999
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+|-.+|.++|..+++++|||||++..+..|+-+|+..++..+.+|+.|.|.+|-+-+
T Consensus 450 eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknL 506 (731)
T KOG0347|consen 450 EKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNL 506 (731)
T ss_pred ccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999997654
No 27
>KOG0346|consensus
Probab=99.96 E-value=2.6e-29 Score=198.29 Aligned_cols=193 Identities=21% Similarity=0.262 Sum_probs=172.3
Q ss_pred ccccCCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCC-ccCCCccEEEeehhhhhhcCCCHHHHHHHH
Q psy7789 5 FISALPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKM-VSLDVCRYLCLDEADRMVDMGFEEDVRTIF 83 (197)
Q Consensus 5 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~-~~l~~l~~vViDEad~l~~~~~~~~i~~i~ 83 (197)
+.+.++..+|++-+....+-......+.+.|||+|+||++++.++..+. ..++.++++|+||||.++..||.+.+..+.
T Consensus 116 L~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~ 195 (569)
T KOG0346|consen 116 LVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLR 195 (569)
T ss_pred HHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHH
Confidence 3455666788887887766666667777889999999999999998776 678999999999999999999999999999
Q ss_pred hhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCC-ccCcceeEEEEEcCchhhHHHHHHHhhcC--CCCEEEEe
Q psy7789 84 SFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAG-AASMNVVQEVEYVKQEAKIVYLLECLQKT--EPPVLIFA 160 (197)
Q Consensus 84 ~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~lIF~ 160 (197)
..+|+..|.+++|||+++++......++.+|+.+.+.+.. ..++.+.|+++.|++++|+..+..+++-. .++.|||+
T Consensus 196 ~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFV 275 (569)
T KOG0346|consen 196 SHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFV 275 (569)
T ss_pred HhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEE
Confidence 9999999999999999999999999999999999887665 45578999999999999999999888754 68999999
Q ss_pred cccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 161 EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 161 ~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
||+.+|-.+.-+|..-|++...++|.|+.+-|..|++
T Consensus 276 NtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~ 312 (569)
T KOG0346|consen 276 NTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIE 312 (569)
T ss_pred echhhhHHHHHHHHHhCcHhhhhcccccccchhhHHH
Confidence 9999999999999999999999999999999987753
No 28
>PTZ00424 helicase 45; Provisional
Probab=99.96 E-value=1.7e-27 Score=194.81 Aligned_cols=187 Identities=25% Similarity=0.403 Sum_probs=164.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||....++...+..+++|+|+||+++.+++.+....+++++++|+||||+++++++...+..+++.++++.
T Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 123 LKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred cCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 36788889999988888888888899999999999999988888899999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc-hhhHHHHHHHhhcC-CCCEEEEecccccHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ-EAKIVYLLECLQKT-EPPVLIFAEKKQDVDA 168 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~ 168 (197)
|++++|||++++.......++++|..+.+.........+.+.+..+.. +.+...+.++++.. ..++||||+|++.|+.
T Consensus 203 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~ 282 (401)
T PTZ00424 203 QVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDY 282 (401)
T ss_pred EEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHH
Confidence 999999999999999999999999888777666666777777776654 45777777777754 3589999999999999
Q ss_pred HHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 169 IHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 169 l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+++.|++.++.+..+||+|++++|+++++
T Consensus 283 l~~~l~~~~~~~~~~h~~~~~~~R~~i~~ 311 (401)
T PTZ00424 283 LTKKMHERDFTVSCMHGDMDQKDRDLIMR 311 (401)
T ss_pred HHHHHHHCCCcEEEEeCCCCHHHHHHHHH
Confidence 99999999999999999999999998763
No 29
>KOG0336|consensus
Probab=99.96 E-value=2.5e-28 Score=191.62 Aligned_cols=186 Identities=31% Similarity=0.475 Sum_probs=169.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.|++...++||.+..+|.+.++.+.+|+|+||++|.++...+.++++.+.|+|+||||.+++.+|.+++++|+--+.+++
T Consensus 320 ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDR 399 (629)
T KOG0336|consen 320 NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDR 399 (629)
T ss_pred cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccC-cceeEEEEEcCchhhHHHHHHHhhcCC--CCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAAS-MNVVQEVEYVKQEAKIVYLLECLQKTE--PPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lIF~~s~~~~~ 167 (197)
|+++.|||||+.++..+..|+++|+.+-+....... ..++|.++...+.+|+..+..++.... -++||||..+..|.
T Consensus 400 qtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 400 QTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhh
Confidence 999999999999999999999999998887666433 456777755567788888777877664 48999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|..-|.-.|+.+..+||+-.|.+|+.-+
T Consensus 480 ~LSSd~~l~gi~~q~lHG~r~Q~DrE~al 508 (629)
T KOG0336|consen 480 HLSSDFCLKGISSQSLHGNREQSDREMAL 508 (629)
T ss_pred hccchhhhcccchhhccCChhhhhHHHHH
Confidence 99999999999999999999999998754
No 30
>KOG0340|consensus
Probab=99.96 E-value=3.1e-28 Score=187.70 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=165.3
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC----CccCCCccEEEeehhhhhhcCCCHHHHHHHHhh
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK----MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSF 85 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~----~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~ 85 (197)
.+++|+++++||.+.-.|...|...||++|+|||++-+++... .+.+++++++|+||||.+++..|-+.+..+++-
T Consensus 101 ~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~ 180 (442)
T KOG0340|consen 101 LLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEEC 180 (442)
T ss_pred cccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhcc
Confidence 3589999999999999999999999999999999999998754 456899999999999999999999999999999
Q ss_pred ccCCceEEEEeecCChhHHHHHHHhcCC--CeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC----CCCEEEE
Q psy7789 86 FRGQRQTLLFSATMPKKIQNFARSALVK--PITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT----EPPVLIF 159 (197)
Q Consensus 86 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~----~~~~lIF 159 (197)
+|..+|..+||||+++.+.+...--... +......+..+..+.+.|.|+.++...|..++.++|+.. .+.++||
T Consensus 181 lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIF 260 (442)
T KOG0340|consen 181 LPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIF 260 (442)
T ss_pred CCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEE
Confidence 9999999999999998877765444444 445566667788889999999999999999999999854 3469999
Q ss_pred ecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 160 AEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 160 ~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
+|+..+|+.|+..|+..++++..+||.|+|.+|-.-
T Consensus 261 vnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 261 VNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred eehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 999999999999999999999999999999999653
No 31
>KOG0334|consensus
Probab=99.94 E-value=6.9e-27 Score=200.41 Aligned_cols=186 Identities=34% Similarity=0.552 Sum_probs=172.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC---CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK---MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR 87 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~---~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~ 87 (197)
.|++++..+||..+..|...++.++.|+|||||+..+++..+ ..+++++.++|+||||++++.+|.+++-.|++.++
T Consensus 465 l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR 544 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc
Confidence 689999999999999999999999999999999999998643 45677777999999999999999999999999999
Q ss_pred CCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC-chhhHHHHHHHhhcC--CCCEEEEecccc
Q psy7789 88 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKT--EPPVLIFAEKKQ 164 (197)
Q Consensus 88 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~--~~~~lIF~~s~~ 164 (197)
+.+|+++||||++..+..+++..+..|+.+.+.........+.+.+..++ +++|+..|.++|... ..++||||.+..
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 99999999999999999999999999999888877788888999999998 899999999999764 579999999999
Q ss_pred cHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 165 DVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|..+...|.+.|+.|..+||+-++.+|..++
T Consensus 625 ~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 625 KADALLRDLQKAGYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred HHHHHHHHHHhcCcchhhhcCCCchHHHHhHH
Confidence 99999999999999999999999999998765
No 32
>KOG0329|consensus
Probab=99.94 E-value=3.2e-27 Score=175.38 Aligned_cols=186 Identities=23% Similarity=0.403 Sum_probs=156.2
Q ss_pred cccccCCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHH
Q psy7789 4 PFISALPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTI 82 (197)
Q Consensus 4 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i 82 (197)
+|++.++ +++++.++||.++....+.+++-|||+|+|||+++.+.+++.+++++++.+|+||||.++++ ..+..++.|
T Consensus 132 rfskymP-~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEi 210 (387)
T KOG0329|consen 132 RFSKYMP-SVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEI 210 (387)
T ss_pred HHHhhCC-CceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHH
Confidence 3566666 79999999999999999999999999999999999999999999999999999999999875 588899999
Q ss_pred HhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCC-ccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEe
Q psy7789 83 FSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAG-AASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFA 160 (197)
Q Consensus 83 ~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~ 160 (197)
.+..|...|+.+||||++++++..++.++++|..+.+.++. ...-++.|+|+...+.+|...+.++|.... .+++||+
T Consensus 211 fr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 211 FRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFV 290 (387)
T ss_pred hhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEee
Confidence 99999999999999999999999999999999999998766 455678888888888888888888777543 5899999
Q ss_pred cccccHHH----HHHHHHhCCCCe----EeecCCCChh
Q psy7789 161 EKKQDVDA----IHEYLLLKGKPF----FTLKSLKEDQ 190 (197)
Q Consensus 161 ~s~~~~~~----l~~~L~~~~~~~----~~~h~~~~~~ 190 (197)
.|..+... ++..|-.+|..+ ..++-+|+.+
T Consensus 291 Ksv~Rl~f~kr~vat~lfgrgmdiervNi~~NYdmp~~ 328 (387)
T KOG0329|consen 291 KSVQRLSFQKRLVATDLFGRGMDIERVNIVFNYDMPED 328 (387)
T ss_pred ehhhhhhhhhhhHHhhhhccccCcccceeeeccCCCCC
Confidence 98877442 444444555432 2455666654
No 33
>KOG0332|consensus
Probab=99.94 E-value=1.6e-26 Score=179.41 Aligned_cols=182 Identities=24% Similarity=0.302 Sum_probs=160.6
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~ 89 (197)
++++....-|....+-. .+ ..+|+|+||+.+.+++.. +.+++..++.+|+||||.+++ .||+++-..|...+|++
T Consensus 188 ~ita~yair~sk~~rG~-~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~ 264 (477)
T KOG0332|consen 188 ELTASYAIRGSKAKRGN-KL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRN 264 (477)
T ss_pred eeeEEEEecCcccccCC-cc--hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCc
Confidence 67777777776222111 11 257999999999999987 888999999999999999986 57999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC-chhhHHHHHHHhhcC-CCCEEEEecccccHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKT-EPPVLIFAEKKQDVD 167 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~ 167 (197)
.|+++||||+...+..++....+++..+.+..+....++++|++..|. +.+|.+.|.++.... -+++||||.|+++|+
T Consensus 265 ~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~ 344 (477)
T KOG0332|consen 265 QQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAM 344 (477)
T ss_pred ceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHH
Confidence 999999999999999999999999999999999999999999999995 567999999977654 379999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+++..|+..|+.+..+||+|..++|..|.
T Consensus 345 ~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii 373 (477)
T KOG0332|consen 345 WLYEEMRAEGHQVSLLHGDLTVEQRAAII 373 (477)
T ss_pred HHHHHHHhcCceeEEeeccchhHHHHHHH
Confidence 99999999999999999999999999875
No 34
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=7.7e-25 Score=188.62 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=139.7
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc----------------cCCCccEEEeehhhhhhcCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV----------------SLDVCRYLCLDEADRMVDMG 74 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~----------------~l~~l~~vViDEad~l~~~~ 74 (197)
.++++..++||.+...|.+.+..+|+|||||+ +++.++.+ .+++++++|+|||| ++.+
T Consensus 112 ~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g 185 (844)
T TIGR02621 112 RPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPA 185 (844)
T ss_pred CCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccc
Confidence 36999999999999999999999999999996 55544443 27899999999999 5778
Q ss_pred CHHHHHHHHhhc--cCC---ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHH-
Q psy7789 75 FEEDVRTIFSFF--RGQ---RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLEC- 148 (197)
Q Consensus 75 ~~~~i~~i~~~~--~~~---~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~- 148 (197)
|.+.+..|++.+ ++. .|+++||||++.++......++.++..+.+.........+.+ ++.+..+.|...+...
T Consensus 186 F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q-~v~v~~e~Kl~~lv~~L 264 (844)
T TIGR02621 186 FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK-LVPPSDEKFLSTMVKEL 264 (844)
T ss_pred cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEE-EEecChHHHHHHHHHHH
Confidence 999999999965 432 699999999999888888888878776666555555555665 3455555555444333
Q ss_pred ---hhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 149 ---LQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 149 ---l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
+...++++||||||+++|+.+++.|++.++ ..+||+|++.+|+
T Consensus 265 ~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 265 NLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD 310 (844)
T ss_pred HHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence 344457899999999999999999999887 8999999999999
No 35
>KOG0348|consensus
Probab=99.92 E-value=6.5e-25 Score=177.10 Aligned_cols=192 Identities=24% Similarity=0.416 Sum_probs=160.3
Q ss_pred cccccCCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhcCCCHHHHHHH
Q psy7789 4 PFISALPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVDMGFEEDVRTI 82 (197)
Q Consensus 4 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~~~~~~~i~~i 82 (197)
++.+.++ +|-.+.+.||.....+...|.+|+.|+|+|||||.+.+.+ ..+.+++++++|+||+|++++-||...+..|
T Consensus 233 KLl~~~h-WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~I 311 (708)
T KOG0348|consen 233 KLLKPFH-WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQI 311 (708)
T ss_pred HHhcCce-EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHH
Confidence 3444444 5888999999999989999999999999999999999875 5788999999999999999999999999999
Q ss_pred Hhhcc-------------CCceEEEEeecCChhHHHHHHHhcCCCeEEEeCC-------------------------CCc
Q psy7789 83 FSFFR-------------GQRQTLLFSATMPKKIQNFARSALVKPITINVGR-------------------------AGA 124 (197)
Q Consensus 83 ~~~~~-------------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~-------------------------~~~ 124 (197)
++.+. +..|.+++|||++..+.......+.+|..|..+. ...
T Consensus 312 l~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~ 391 (708)
T KOG0348|consen 312 LKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFA 391 (708)
T ss_pred HHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccccccc
Confidence 88872 2358899999999999999999999999888321 123
Q ss_pred cCcceeEEEEEcCchhhHHHHHHHhhcC-----CCCEEEEecccccHHHHHHHHHhC----------------------C
Q psy7789 125 ASMNVVQEVEYVKQEAKIVYLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLK----------------------G 177 (197)
Q Consensus 125 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~-----~~~~lIF~~s~~~~~~l~~~L~~~----------------------~ 177 (197)
.++.+.|.+..++..-++-.|..+|... ..++|||+++.+.++.=++.|... +
T Consensus 392 iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~ 471 (708)
T KOG0348|consen 392 IPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMD 471 (708)
T ss_pred CcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhc
Confidence 4556777888888888888888877643 347999999999999999988531 3
Q ss_pred CCeEeecCCCChhhhhhhh
Q psy7789 178 KPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 178 ~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++-+||+|+|++|..+.
T Consensus 472 ~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 472 LKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred ceEEEecCchhHHHHHHHH
Confidence 4689999999999998764
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=2.5e-23 Score=180.64 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=130.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHh-cC---CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLD-KK---MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~-~~---~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.++++..+.|+.+.. +.+.+.++++|+|+||++|...+. .. ...++++++||+||||.+.+ .|+.++..+++++
T Consensus 107 ~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL 184 (742)
T TIGR03817 107 RGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRL 184 (742)
T ss_pred CCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHH
Confidence 478998888877744 556677789999999999986432 11 12378999999999999976 3777766665544
Q ss_pred -------cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC----------------chhhHH
Q psy7789 87 -------RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK----------------QEAKIV 143 (197)
Q Consensus 87 -------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~----------------~~~k~~ 143 (197)
+.++|++++|||++++.. .+..++..+..+ +.............++... ..++..
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~ 262 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAAD 262 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCccccccccccccccchHHHHHH
Confidence 467899999999997754 577777777554 3322222222333222221 123555
Q ss_pred HHHHHhhcCCCCEEEEecccccHHHHHHHHHhC--------CCCeEeecCCCChhhhhhhhC
Q psy7789 144 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--------GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.+.++++. +.++||||||++.|+.++..|++. +.++..+||+|++++|+++++
T Consensus 263 ~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 263 LLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred HHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 66666654 579999999999999999998764 568899999999999999874
No 37
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=4.1e-23 Score=186.76 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=129.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC-CccCCCccEEEeehhhhhhcCCCHH----HHHHHHhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK-MVSLDVCRYLCLDEADRMVDMGFEE----DVRTIFSF 85 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~-~~~l~~l~~vViDEad~l~~~~~~~----~i~~i~~~ 85 (197)
.++++..++||.+..++.+.++++|||||+|||+|..++.++ ...++++++|||||+|.+.+..++. .+..+...
T Consensus 76 ~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l 155 (1490)
T PRK09751 76 VNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL 155 (1490)
T ss_pred CceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh
Confidence 489999999999999888888888999999999999988643 3468999999999999999764444 45555555
Q ss_pred ccCCceEEEEeecCChhHHHHHHHhcC-CCeEEEeCCCCccCcceeEEEEEcCchhh-----------------------
Q psy7789 86 FRGQRQTLLFSATMPKKIQNFARSALV-KPITINVGRAGAASMNVVQEVEYVKQEAK----------------------- 141 (197)
Q Consensus 86 ~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~~~~k----------------------- 141 (197)
++.+.|+|++|||+++ ..++.+.+.. ++..+...+.. ....+. .++.+....+
T Consensus 156 ~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~-r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~ 232 (1490)
T PRK09751 156 LHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAM-RHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPY 232 (1490)
T ss_pred CCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCC-cccceE-EEEecCchhhccccccccccccchhhhhhhhHH
Confidence 6678899999999986 4566544433 35544332222 112222 2222211100
Q ss_pred -HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCC---------------------------------CCeEeecCCC
Q psy7789 142 -IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG---------------------------------KPFFTLKSLK 187 (197)
Q Consensus 142 -~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~ 187 (197)
...+++.+. .+.++||||||++.|+.++..|++.. +.+..+||+|
T Consensus 233 v~~~il~~i~-~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 233 IETGILDEVL-RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHHHHHh-cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccC
Confidence 012222222 24689999999999999999997642 1267899999
Q ss_pred ChhhhhhhhC
Q psy7789 188 EDQNNQTLEN 197 (197)
Q Consensus 188 ~~~~R~~i~~ 197 (197)
++++|..|++
T Consensus 312 SkeeR~~IE~ 321 (1490)
T PRK09751 312 SKEQRAITEQ 321 (1490)
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=1.3e-22 Score=177.94 Aligned_cols=184 Identities=14% Similarity=0.182 Sum_probs=133.1
Q ss_pred CCCCeeEEEEEcCCChHHhHHHHh------cCCcEEEeCchHHHH--HHhc---CCccCCCccEEEeehhhhhhcCC--C
Q psy7789 9 LPIPLRTCLAIGGVPMNQSLDVIK------KGCHMMVATPGRLMD--MLDK---KMVSLDVCRYLCLDEADRMVDMG--F 75 (197)
Q Consensus 9 ~~~~i~~~~~~gg~~~~~~~~~l~------~~~~Ili~TP~~l~~--~l~~---~~~~l~~l~~vViDEad~l~~~~--~ 75 (197)
...|++++.+.||.+..++.+.+. +.++||++|||+|.. .+.+ .......+.+|||||||++++|| |
T Consensus 521 ~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 521 LQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred HhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 446899999999998877766553 468999999999863 1221 11123568999999999999997 8
Q ss_pred HHHHHHH--HhhccCCceEEEEeecCChhHHHHHHHhcC--CCeEEEeCCCCccCcceeEEEEEcCchh-hHHHHHHHhh
Q psy7789 76 EEDVRTI--FSFFRGQRQTLLFSATMPKKIQNFARSALV--KPITINVGRAGAASMNVVQEVEYVKQEA-KIVYLLECLQ 150 (197)
Q Consensus 76 ~~~i~~i--~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~ 150 (197)
++.+..+ +....+..|++++|||+++.+.+.+...+. ++..+... ..++++...+ +.... ....+.++++
T Consensus 601 RpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL~y~V--v~k~kk~le~L~~~I~ 675 (1195)
T PLN03137 601 RPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNLWYSV--VPKTKKCLEDIDKFIK 675 (1195)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccceEEEE--eccchhHHHHHHHHHH
Confidence 8877653 333345788999999999998886655554 33332221 2233443322 22222 3456677776
Q ss_pred cC--CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 151 KT--EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 151 ~~--~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.. ..++||||+|++.|+.+++.|++.|+++..+||+|++++|+.+++
T Consensus 676 ~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 676 ENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred hcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 43 457999999999999999999999999999999999999998863
No 39
>PRK09401 reverse gyrase; Reviewed
Probab=99.90 E-value=4.1e-22 Score=178.98 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=135.2
Q ss_pred CCeeEEEEEcCCCh-----HHhHHHHh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-----------C
Q psy7789 11 IPLRTCLAIGGVPM-----NQSLDVIK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-----------M 73 (197)
Q Consensus 11 ~~i~~~~~~gg~~~-----~~~~~~l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-----------~ 73 (197)
.++++..++||.+. +++.+.+. +++||+|+||++|.+.+. .+...+++++|+||||++++ .
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 36788888887652 33344555 459999999999999876 45567799999999999986 4
Q ss_pred CCH-HHHHHHHhhccC------------------------CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcc
Q psy7789 74 GFE-EDVRTIFSFFRG------------------------QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMN 128 (197)
Q Consensus 74 ~~~-~~i~~i~~~~~~------------------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 128 (197)
||. +.+..++..++. ..|++++|||+++.... ..+++++..+.+........+
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~--~~l~~~ll~~~v~~~~~~~rn 305 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNR--VKLFRELLGFEVGSPVFYLRN 305 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchH--HHHhhccceEEecCcccccCC
Confidence 564 678888777764 68999999999875222 134566666777766666778
Q ss_pred eeEEEEEcCchhhHHHHHHHhhcCCCCEEEEeccccc---HHHHHHHHHhCCCCeEeecCCC
Q psy7789 129 VVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQD---VDAIHEYLLLKGKPFFTLKSLK 187 (197)
Q Consensus 129 i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~---~~~l~~~L~~~~~~~~~~h~~~ 187 (197)
+.+.++.+. +|...+.++++..+.++||||+|++. |+++++.|++.|+++..+||+|
T Consensus 306 I~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 306 IVDSYIVDE--DSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred ceEEEEEcc--cHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 888877665 67778888888777799999999988 9999999999999999999999
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=8.8e-22 Score=173.95 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=126.1
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc--cCCCccEEEeehhhhhhcCCCHHHHHHHHhh----
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV--SLDVCRYLCLDEADRMVDMGFEEDVRTIFSF---- 85 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~--~l~~l~~vViDEad~l~~~~~~~~i~~i~~~---- 85 (197)
++++...+|+.+...+.+.+.++|+|+|+||++|..++....+ .++++++||+||+|.+.+..++.++...+.+
T Consensus 124 ~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 124 EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHh
Confidence 7899999999998888888888899999999999988865543 5799999999999999987666665544433
Q ss_pred ccCCceEEEEeecCChhHHHHHHHhcC-------CCeEEEeCCCCccCcceeEE-----EEEcCch----hhHHHHHHHh
Q psy7789 86 FRGQRQTLLFSATMPKKIQNFARSALV-------KPITINVGRAGAASMNVVQE-----VEYVKQE----AKIVYLLECL 149 (197)
Q Consensus 86 ~~~~~q~i~~SAT~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~i~~~-----~~~~~~~----~k~~~l~~~l 149 (197)
.+...|++++|||+++ .......... .+..+ +.........+... ....... .....+.+++
T Consensus 204 ~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~i-v~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i 281 (876)
T PRK13767 204 AGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEI-VDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELI 281 (876)
T ss_pred cCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEE-EccCCCccceEEEeccCccccccccchhHHHHHHHHHHHH
Confidence 3467899999999975 2333333221 11122 11111111001100 0111111 1233444444
Q ss_pred hcCCCCEEEEecccccHHHHHHHHHhC------CCCeEeecCCCChhhhhhhhC
Q psy7789 150 QKTEPPVLIFAEKKQDVDAIHEYLLLK------GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 150 ~~~~~~~lIF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+. ++++||||||++.|+.++..|++. +..+..+||+|++++|..+++
T Consensus 282 ~~-~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 282 KE-HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred hc-CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 43 468999999999999999999873 467999999999999999874
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=2.8e-21 Score=161.06 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=128.5
Q ss_pred CCeeEEEEEcCCChHHhHHH---H-hcCCcEEEeCchHHHHHH-hcCCc-cCCCccEEEeehhhhhhcCC--CHHHHHHH
Q psy7789 11 IPLRTCLAIGGVPMNQSLDV---I-KKGCHMMVATPGRLMDML-DKKMV-SLDVCRYLCLDEADRMVDMG--FEEDVRTI 82 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~---l-~~~~~Ili~TP~~l~~~l-~~~~~-~l~~l~~vViDEad~l~~~~--~~~~i~~i 82 (197)
.|+++..+.|+.+..++... + .+.++|+++||+++.... ....+ ...+++++||||||++.+|+ |++.+..+
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 47888888888776544332 2 345899999999986432 11122 56899999999999999886 67766554
Q ss_pred ---HhhccCCceEEEEeecCChhHHHHHHHhc--CCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhh-cC-CCC
Q psy7789 83 ---FSFFRGQRQTLLFSATMPKKIQNFARSAL--VKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQ-KT-EPP 155 (197)
Q Consensus 83 ---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-~~-~~~ 155 (197)
...+ ++.|++++|||+++.+.......+ .+|..+.... .++++...+.. ........+.+++. .. +++
T Consensus 154 ~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~ 228 (470)
T TIGR00614 154 GSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---DRPNLYYEVRR-KTPKILEDLLRFIRKEFKGKS 228 (470)
T ss_pred HHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---CCCCcEEEEEe-CCccHHHHHHHHHHHhcCCCc
Confidence 3344 578899999999988776555544 3554443321 12333322221 22245666777776 33 346
Q ss_pred EEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 156 VLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+||||+|++.|+.+++.|++.|+++..+||+|++++|+++++
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHH 270 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHH
Confidence 799999999999999999999999999999999999998863
No 42
>PRK00254 ski2-like helicase; Provisional
Probab=99.87 E-value=1.8e-21 Score=169.61 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=126.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.|+++..++|+.+...+ +.+.++|+|+||+++..++.+....+++++++|+||+|.+.+.+++..+..++..++...
T Consensus 94 ~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 94 LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 58999999999765432 234599999999999999987777789999999999999998889999999999999899
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccC---cceeEEEEEcCch--h-----hHHHHHHHhhcCCCCEEEEe
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAAS---MNVVQEVEYVKQE--A-----KIVYLLECLQKTEPPVLIFA 160 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~i~~~~~~~~~~--~-----k~~~l~~~l~~~~~~~lIF~ 160 (197)
|++++|||++. ..++.. |+...... ......+ ....+.+...... . ....+.+.++ .++++||||
T Consensus 171 qiI~lSATl~n-~~~la~-wl~~~~~~--~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~vLVF~ 245 (720)
T PRK00254 171 QILGLSATVGN-AEELAE-WLNAELVV--SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK-KGKGALVFV 245 (720)
T ss_pred cEEEEEccCCC-HHHHHH-HhCCcccc--CCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH-hCCCEEEEE
Confidence 99999999975 455554 44332211 1111111 0011111111111 1 1123334444 357999999
Q ss_pred cccccHHHHHHHHHhC---------------------------------CCCeEeecCCCChhhhhhhhC
Q psy7789 161 EKKQDVDAIHEYLLLK---------------------------------GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 161 ~s~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~~~~R~~i~~ 197 (197)
||++.|+.++..|.+. ...+.++||+|++++|+.|++
T Consensus 246 ~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 246 NTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred cChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHH
Confidence 9999999888776421 235899999999999999873
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=4.2e-21 Score=164.10 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=134.5
Q ss_pred CCeeEEEEEcCCChHHhHHHH----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC--CHHHHHHH--
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG--FEEDVRTI-- 82 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~--~~~~i~~i-- 82 (197)
.|+.+..+.|+.+..++...+ .+.++|+++||+++........+...++++|||||||++.+|+ |++.+..+
T Consensus 76 ~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 76 AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 478888899988766554332 3468999999999976544445567899999999999999876 77766655
Q ss_pred -HhhccCCceEEEEeecCChhHHHHHHHhcC--CCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC-CCCEEE
Q psy7789 83 -FSFFRGQRQTLLFSATMPKKIQNFARSALV--KPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLI 158 (197)
Q Consensus 83 -~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~lI 158 (197)
...++ ..+++++|||.++.+......++. ++..+.. ...++++... ......+...+.+++... +.++||
T Consensus 156 l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl~~~--v~~~~~~~~~l~~~l~~~~~~~~II 229 (591)
T TIGR01389 156 LAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT---SFDRPNLRFS--VVKKNNKQKFLLDYLKKHRGQSGII 229 (591)
T ss_pred HHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCCcEEE--EEeCCCHHHHHHHHHHhcCCCCEEE
Confidence 34444 445999999999998876666654 3333321 1222333322 234456777888888765 468999
Q ss_pred EecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 159 FAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 159 F~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
||+|++.|+.+++.|...|+++..+||+|++++|++++
T Consensus 230 f~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 230 YASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 44
>PRK14701 reverse gyrase; Provisional
Probab=99.87 E-value=8.1e-21 Score=174.24 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=135.5
Q ss_pred cccCCCCeeEEEEEcCCChHHhHH---HHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC--------
Q psy7789 6 ISALPIPLRTCLAIGGVPMNQSLD---VIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-------- 73 (197)
Q Consensus 6 ~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-------- 73 (197)
.+..+.+++++.++||.+..++.+ .+.. .+||+|+||++|...+... . ..+++++|+||||++++|
T Consensus 146 ~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid~~L 223 (1638)
T PRK14701 146 CEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNIDRSL 223 (1638)
T ss_pred HhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccchhh
Confidence 344556889999999998776653 3444 4999999999998876542 2 278999999999999873
Q ss_pred ---CCHHHHHH----HHh----------------------hccCCce-EEEEeecCChhHHHHHHHhcCCCeEEEeCCCC
Q psy7789 74 ---GFEEDVRT----IFS----------------------FFRGQRQ-TLLFSATMPKKIQNFARSALVKPITINVGRAG 123 (197)
Q Consensus 74 ---~~~~~i~~----i~~----------------------~~~~~~q-~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (197)
||.+++.. +++ .+++.+| ++++|||.++. .....+++++..+.+....
T Consensus 224 ~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~~~ 301 (1638)
T PRK14701 224 QLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGSGR 301 (1638)
T ss_pred hcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecCCC
Confidence 67777754 432 2355566 67799999864 2222456788888888777
Q ss_pred ccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccH---HHHHHHHHhCCCCeEeecCC
Q psy7789 124 AASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDV---DAIHEYLLLKGKPFFTLKSL 186 (197)
Q Consensus 124 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~---~~l~~~L~~~~~~~~~~h~~ 186 (197)
....++.+.++.+..+.| ..+.++++..+.++||||+|++.+ +++++.|.+.|+++..+||+
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 777888888887766655 578888887777899999998864 89999999999999999996
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=99.86 E-value=6.4e-21 Score=166.49 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=123.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc---c
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF---R 87 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~---~ 87 (197)
.|+++..++|+.+...+ ..+.+||+|+|||++..++++....+++++++|+||+|.+.+.+++..++.++.++ +
T Consensus 93 ~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~ 169 (737)
T PRK02362 93 LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN 169 (737)
T ss_pred CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC
Confidence 48999999998765432 22458999999999999998776678999999999999999888888888776555 4
Q ss_pred CCceEEEEeecCChhHHHHHHHhcCC-------CeEEE--eCCCCccCcceeEEEEEcCc-hhhHHHHHHHhhcCCCCEE
Q psy7789 88 GQRQTLLFSATMPKKIQNFARSALVK-------PITIN--VGRAGAASMNVVQEVEYVKQ-EAKIVYLLECLQKTEPPVL 157 (197)
Q Consensus 88 ~~~q~i~~SAT~~~~~~~~~~~~~~~-------~~~i~--~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~l 157 (197)
++.|++++|||++. ..++..++... |+.+. +.........-.+....... ......+.+.++ .++++|
T Consensus 170 ~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L 247 (737)
T PRK02362 170 PDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE-EGGQCL 247 (737)
T ss_pred CCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH-cCCCeE
Confidence 67899999999974 34444333211 11110 00000000000011111111 223344444444 456999
Q ss_pred EEecccccHHHHHHHHHhCC------------------------------------CCeEeecCCCChhhhhhhhC
Q psy7789 158 IFAEKKQDVDAIHEYLLLKG------------------------------------KPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 158 IF~~s~~~~~~l~~~L~~~~------------------------------------~~~~~~h~~~~~~~R~~i~~ 197 (197)
|||+|++.|+.++..|.+.. ..++++||+|++++|+.|++
T Consensus 248 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~ 323 (737)
T PRK02362 248 VFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVED 323 (737)
T ss_pred EEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHH
Confidence 99999999999999886431 35889999999999999874
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.86 E-value=2.2e-20 Score=159.83 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=128.2
Q ss_pred CCeeEEEEEcCCChHHhHHH---Hh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC--CHHHHHHH--
Q psy7789 11 IPLRTCLAIGGVPMNQSLDV---IK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG--FEEDVRTI-- 82 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~---l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~--~~~~i~~i-- 82 (197)
.|+.+..+.++.+...+... +. +.++++++||+++........+...+++++||||||++.+|+ |++.+..+
T Consensus 88 ~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~ 167 (607)
T PRK11057 88 NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQ 167 (607)
T ss_pred cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHH
Confidence 47888888888776554433 32 358999999999984322233445689999999999999886 66655443
Q ss_pred -HhhccCCceEEEEeecCChhHHHHHHHhc--CCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC-CCCEEE
Q psy7789 83 -FSFFRGQRQTLLFSATMPKKIQNFARSAL--VKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLI 158 (197)
Q Consensus 83 -~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~lI 158 (197)
.+.+ ++.|++++|||.++.+.......+ .+|...... . .++++.. ..+....+...+..++... +.++||
T Consensus 168 l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~-~--~r~nl~~--~v~~~~~~~~~l~~~l~~~~~~~~II 241 (607)
T PRK11057 168 LRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-F--DRPNIRY--TLVEKFKPLDQLMRYVQEQRGKSGII 241 (607)
T ss_pred HHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-C--CCCccee--eeeeccchHHHHHHHHHhcCCCCEEE
Confidence 3444 478899999999988766444433 455433222 1 1233322 2233344566677777654 468999
Q ss_pred EecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 159 FAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 159 F~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
||+|++.|+.+++.|++.|+++..+||+|++++|+++++
T Consensus 242 Fc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 242 YCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998863
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.86 E-value=7e-21 Score=163.60 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=133.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc--cCCCccEEEeehhhhhhcCCCHHHHH----HHHh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV--SLDVCRYLCLDEADRMVDMGFEEDVR----TIFS 84 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~--~l~~l~~vViDEad~l~~~~~~~~i~----~i~~ 84 (197)
.|+.+..-+|+.+..+..++..++|||+|+|||+|.-++..+.+ .|+++++||+||.|.+.+...+.++. .+..
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~ 179 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRE 179 (814)
T ss_pred cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHh
Confidence 37778899999998888888899999999999999999976543 48999999999999998765555544 4333
Q ss_pred hccCCceEEEEeecCChhHHHHHHHhcCC--CeEEEeCCCCccCcceeEEEEEc---------CchhhHHHHHHHhhcCC
Q psy7789 85 FFRGQRQTLLFSATMPKKIQNFARSALVK--PITINVGRAGAASMNVVQEVEYV---------KQEAKIVYLLECLQKTE 153 (197)
Q Consensus 85 ~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~~~~~---------~~~~k~~~l~~~l~~~~ 153 (197)
..+ +.|.|++|||.. +....++.+... +..|.-....... ....... ........+.++++++.
T Consensus 180 l~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k~~---~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ 254 (814)
T COG1201 180 LAG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAKKL---EIKVISPVEDLIYDEELWAALYERIAELVKKHR 254 (814)
T ss_pred hCc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCCcc---eEEEEecCCccccccchhHHHHHHHHHHHhhcC
Confidence 334 889999999997 445555555544 3333222222111 1111111 11234556666666665
Q ss_pred CCEEEEecccccHHHHHHHHHhCC-CCeEeecCCCChhhhhhhhC
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKG-KPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~R~~i~~ 197 (197)
.+|||+||+..+|.++..|++.+ ..+..+||.+|.++|..+++
T Consensus 255 -ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~ 298 (814)
T COG1201 255 -TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEE 298 (814)
T ss_pred -cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHH
Confidence 89999999999999999999987 89999999999999998874
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.6e-21 Score=160.99 Aligned_cols=184 Identities=15% Similarity=0.204 Sum_probs=136.3
Q ss_pred CCCeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC--CHHHHHHHH
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG--FEEDVRTIF 83 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~--~~~~i~~i~ 83 (197)
..|++++.+.+..+.++....+ . +..+++.-+||+|...-....+.-..+.++|||||||+.+|| |++.+..+-
T Consensus 79 ~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg 158 (590)
T COG0514 79 AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLG 158 (590)
T ss_pred HcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHH
Confidence 3589999999987766655433 3 348999999999997654444556788899999999999997 998877664
Q ss_pred ---hhccCCceEEEEeecCChhHHHHHHHhcC--CCeEEEeCCCCccCcceeEEEEEcC-chhhHHHHHHHhhcCCCCEE
Q psy7789 84 ---SFFRGQRQTLLFSATMPKKIQNFARSALV--KPITINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKTEPPVL 157 (197)
Q Consensus 84 ---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~l 157 (197)
..+| ++.++++|||.++.+...+...+. .+..+... -.++++........ ...+..++.+......+++|
T Consensus 159 ~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GI 234 (590)
T COG0514 159 RLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGI 234 (590)
T ss_pred HHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CCCchhhhhhhhcccHHHHHHHHHhhccccCCCeE
Confidence 4444 789999999999998886666554 44333332 22344544433332 23444444443344456799
Q ss_pred EEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 158 IFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 158 IF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
|||.|++.|+.++++|...|+++..+||||+.++|+.+++
T Consensus 235 IYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 235 IYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred EEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998863
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.85 E-value=9.9e-20 Score=163.46 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=129.8
Q ss_pred CCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.++++..++|+.+..++...+. +++||+||||+.+ . ..+.+++++++||||+|++ ++. ....++.+
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrf---G~~--~~e~lk~l 745 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRF---GVR--HKERIKAM 745 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhc---chh--HHHHHHhc
Confidence 4789999999988777765543 4699999999633 2 4456789999999999997 222 24556778
Q ss_pred cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCch-hhHHHHHHHhhcCCCCEEEEeccccc
Q psy7789 87 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQD 165 (197)
Q Consensus 87 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~~l~~~~~~~lIF~~s~~~ 165 (197)
+.+.|+++||||..+.+..+....++++..+...+... ..+.+.+...... .+...+.++. .+++++||||+++.
T Consensus 746 ~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~~~k~~il~el~--r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 746 RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSLVVREAILREIL--RGGQVYYLYNDVEN 821 (1147)
T ss_pred CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcHHHHHHHHHHHh--cCCeEEEEECCHHH
Confidence 88999999999998888888888888988887654332 2344444433322 2333333333 24689999999999
Q ss_pred HHHHHHHHHhC--CCCeEeecCCCChhhhhhhhC
Q psy7789 166 VDAIHEYLLLK--GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 166 ~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~~ 197 (197)
++.+++.|++. +.++..+||+|++++|+++++
T Consensus 822 ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~ 855 (1147)
T PRK10689 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 (1147)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 99999999987 789999999999999998863
No 50
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=153.70 Aligned_cols=181 Identities=12% Similarity=0.171 Sum_probs=138.1
Q ss_pred CCCCeeEEEEEcCCChHHhHHHH----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHH--
Q psy7789 9 LPIPLRTCLAIGGVPMNQSLDVI----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTI-- 82 (197)
Q Consensus 9 ~~~~i~~~~~~gg~~~~~~~~~l----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i-- 82 (197)
.++|+++++-+|-.-+....+.. ...+||||+|=+-+-.+++.+ -.+.++..|||||+|.+-+...++.+..+
T Consensus 286 s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~ 364 (830)
T COG1202 286 SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIG 364 (830)
T ss_pred hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHH
Confidence 34688888888876555443222 234899999999999999877 56899999999999999875555544444
Q ss_pred -HhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC-chhhHHHHHHHhhc---------
Q psy7789 83 -FSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQK--------- 151 (197)
Q Consensus 83 -~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~--------- 151 (197)
++++-+.+|++.+|||+..+ .+.++.+.-..+..+- .|..+..+.+++. +.+|.+.+..+.+.
T Consensus 365 RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 365 RLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 44455689999999999644 6666666555544422 2233555556664 78888888777753
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.+|+|||++|++.|..+|..|..+|+++.++|+||+..+|+.++
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE 483 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVE 483 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHH
Confidence 246999999999999999999999999999999999999999886
No 51
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=1.6e-19 Score=157.50 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=127.9
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhh-hhcCCCHHH-HHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR-MVDMGFEED-VRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~-l~~~~~~~~-i~~i~~~~~~~ 89 (197)
|..|...+++.+ ..+..++|+|+|||+|+..+.+. ..++++++|||||+|. .++.++... +..+.+.++++
T Consensus 74 g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~d 146 (819)
T TIGR01970 74 GQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRED 146 (819)
T ss_pred CcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCC
Confidence 455655555533 12345899999999999998764 5789999999999994 677655443 45566667889
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhH-----HHHHHHhhcCCCCEEEEecccc
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKI-----VYLLECLQKTEPPVLIFAEKKQ 164 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~~l~~~~~~~lIF~~s~~ 164 (197)
.|+++||||++.+. ...++.++..+.+.... ..+.++|..+...++. ..+..+++...+++|||+++..
T Consensus 147 lqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ 220 (819)
T TIGR01970 147 LKILAMSATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQA 220 (819)
T ss_pred ceEEEEeCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHH
Confidence 99999999998654 35677766666654322 2356666655444432 3455666666689999999999
Q ss_pred cHHHHHHHHHh---CCCCeEeecCCCChhhhhhhh
Q psy7789 165 DVDAIHEYLLL---KGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 165 ~~~~l~~~L~~---~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+++.+++.|++ .++.+..+||+|++++|+++.
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~ 255 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAI 255 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHH
Confidence 99999999987 478999999999999998875
No 52
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.83 E-value=2.3e-19 Score=161.55 Aligned_cols=166 Identities=17% Similarity=0.283 Sum_probs=124.0
Q ss_pred EEEEcCCChHHhH---HHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-----------CCCHHH-H
Q psy7789 16 CLAIGGVPMNQSL---DVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-----------MGFEED-V 79 (197)
Q Consensus 16 ~~~~gg~~~~~~~---~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-----------~~~~~~-i 79 (197)
..++||.+..++. +.+.+ +++|+|+||++|...+.. +.. +++++|+||||.+++ .||.++ +
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHH
Confidence 3577888876554 33443 599999999999988764 122 899999999999997 456653 4
Q ss_pred HHHH----------------------hhccCCce--EEEEeec-CChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEE
Q psy7789 80 RTIF----------------------SFFRGQRQ--TLLFSAT-MPKKIQNFARSALVKPITINVGRAGAASMNVVQEVE 134 (197)
Q Consensus 80 ~~i~----------------------~~~~~~~q--~i~~SAT-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 134 (197)
..++ +.+++..| ++++||| .+..+. ..+++++..+.+........++.+.+.
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~~v~~~~~~~r~I~~~~~ 309 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGFEVGGGSDTLRNVVDVYV 309 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccceEecCccccccceEEEEE
Confidence 4432 33455555 6779999 454433 245677777777776667778888876
Q ss_pred EcCchhhHHHHHHHhhcCCCCEEEEeccc---ccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 135 YVKQEAKIVYLLECLQKTEPPVLIFAEKK---QDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 135 ~~~~~~k~~~l~~~l~~~~~~~lIF~~s~---~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.+.. +...+.++++..+.++||||+|+ +.|+++++.|++.|+++..+||+|++
T Consensus 310 ~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 310 EDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred eccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 5543 34567788877777899999999 99999999999999999999999974
No 53
>KOG0349|consensus
Probab=99.83 E-value=2e-20 Score=148.49 Aligned_cols=186 Identities=24% Similarity=0.401 Sum_probs=152.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC--
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-- 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-- 88 (197)
..+|..++.||...+.|...+.++.||+|+||+|+..++..+.+.+.+++++|+||+|.++..++-+.+..+...+|+
T Consensus 316 p~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~t 395 (725)
T KOG0349|consen 316 PEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT 395 (725)
T ss_pred hhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhh
Confidence 357888999999999999999999999999999999999999999999999999999999999999999988888874
Q ss_pred ----CceEEEEeecCCh-hHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCch------------------------
Q psy7789 89 ----QRQTLLFSATMPK-KIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQE------------------------ 139 (197)
Q Consensus 89 ----~~q~i~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~------------------------ 139 (197)
..|.+++|||+.. ++..+.++.|-=|.++++..+...++.+.+....+...
T Consensus 396 sdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~ 475 (725)
T KOG0349|consen 396 SDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLL 475 (725)
T ss_pred cCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccc
Confidence 4599999999863 46667778888899999998888888777765543210
Q ss_pred ------hhH---------HHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCC---CCeEeecCCCChhhhhhhh
Q psy7789 140 ------AKI---------VYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKG---KPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 140 ------~k~---------~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~R~~i~ 196 (197)
+-. .+-+..++++ ..++||||.|+.+|..|-..++++| |+|.++||+..++||++-+
T Consensus 476 pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nl 551 (725)
T KOG0349|consen 476 PGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANL 551 (725)
T ss_pred cccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHH
Confidence 001 1111222222 2489999999999999999999884 7999999999888887654
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.83 E-value=3.6e-19 Score=155.53 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=129.1
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhh-hhcCCC-HHHHHHHHhhccC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR-MVDMGF-EEDVRTIFSFFRG 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~-l~~~~~-~~~i~~i~~~~~~ 88 (197)
.|..+...++|.+... ...+|+|+|||+|.+++... ..++++++||+||+|. .++.++ ...+..+++.+++
T Consensus 76 ~g~~VGy~vr~~~~~~------~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~ 148 (812)
T PRK11664 76 PGETVGYRMRAESKVG------PNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD 148 (812)
T ss_pred cCceEEEEecCccccC------CCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc
Confidence 3667777777654322 24689999999999998754 4789999999999997 344333 2334566677888
Q ss_pred CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHH-----HHHHHhhcCCCCEEEEeccc
Q psy7789 89 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIV-----YLLECLQKTEPPVLIFAEKK 163 (197)
Q Consensus 89 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~~l~~~~~~~lIF~~s~ 163 (197)
+.|+++||||++.+. ...++.++..+.+.... ..+.++|..+...++.. .+..+++...+++|||+++.
T Consensus 149 ~lqlilmSATl~~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~ 222 (812)
T PRK11664 149 DLKLLIMSATLDNDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGV 222 (812)
T ss_pred cceEEEEecCCCHHH---HHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCH
Confidence 999999999998652 35677766666554322 23666666666555543 45566666668999999999
Q ss_pred ccHHHHHHHHHh---CCCCeEeecCCCChhhhhhhh
Q psy7789 164 QDVDAIHEYLLL---KGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 164 ~~~~~l~~~L~~---~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.+++.|++ .++.+..+||+|++++|+++.
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~ 258 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAI 258 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHh
Confidence 999999999987 578899999999999988765
No 55
>KOG0350|consensus
Probab=99.82 E-value=4.4e-20 Score=148.33 Aligned_cols=187 Identities=20% Similarity=0.288 Sum_probs=150.4
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhc-CC----cEEEeCchHHHHHHh-cCCccCCCccEEEeehhhhhhcCCCHHHHHHHH
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKK-GC----HMMVATPGRLMDMLD-KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIF 83 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~-~~----~Ili~TP~~l~~~l~-~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~ 83 (197)
+.|+.|+.+.|-.+.+.+.+.|.+ .+ ||+|+|||||.+.++ .+.++|++++|+||||||+|++..|.+.+-.+.
T Consensus 241 ~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~ 320 (620)
T KOG0350|consen 241 GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVM 320 (620)
T ss_pred CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHH
Confidence 468999999999999999988864 45 999999999999998 578999999999999999999876666555443
Q ss_pred hhcc----------------------------------CCceEEEEeecCChhHHHHHHHhcCCCeEEEeC----CCCcc
Q psy7789 84 SFFR----------------------------------GQRQTLLFSATMPKKIQNFARSALVKPITINVG----RAGAA 125 (197)
Q Consensus 84 ~~~~----------------------------------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~----~~~~~ 125 (197)
..+. +..+.+++|||++.........-+..|....+. ...+.
T Consensus 321 ~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~rysl 400 (620)
T KOG0350|consen 321 SLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSL 400 (620)
T ss_pred HHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeec
Confidence 3331 112467899999877777777777777665554 34567
Q ss_pred CcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHHHHHHHH----hCCCCeEeecCCCChhhhhhhh
Q psy7789 126 SMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLL----LKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 126 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+..+.++.+.+....|...+..++.... .++|+|+++...+..++..|+ +.+.++..+.|.++.+.|.+.+
T Consensus 401 p~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l 476 (620)
T KOG0350|consen 401 PSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKML 476 (620)
T ss_pred ChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHH
Confidence 7778888777777788888998888765 589999999999999999887 3467788899999999998754
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.82 E-value=1.9e-19 Score=156.03 Aligned_cols=179 Identities=14% Similarity=0.177 Sum_probs=120.3
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhh---c
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSF---F 86 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~---~ 86 (197)
..|+++...+|+.+.... .+ +.+||+|+|||++..++.+....+.+++++|+||+|.+.+.+++..+..++.. +
T Consensus 90 ~~g~~v~~~~G~~~~~~~--~~-~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 90 SLGMRVKISIGDYDDPPD--FI-KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred hcCCeEEEEeCCCCCChh--hh-ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 458899999998654322 22 35899999999999998877767899999999999999887788777776544 4
Q ss_pred cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEE-----EcCchh-hHHHHHHHhh---cCCCCEE
Q psy7789 87 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVE-----YVKQEA-KIVYLLECLQ---KTEPPVL 157 (197)
Q Consensus 87 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~-----~~~~~~-k~~~l~~~l~---~~~~~~l 157 (197)
+++.|++++|||++. ..++.++ +..+. +... .. +..+..... ...... ....+..++. ..++++|
T Consensus 167 ~~~~riI~lSATl~n-~~~la~w-l~~~~-~~~~-~r--~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vL 240 (674)
T PRK01172 167 NPDARILALSATVSN-ANELAQW-LNASL-IKSN-FR--PVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVL 240 (674)
T ss_pred CcCCcEEEEeCccCC-HHHHHHH-hCCCc-cCCC-CC--CCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEE
Confidence 568899999999974 4555543 33221 1110 01 111111111 111111 1111222222 3457999
Q ss_pred EEecccccHHHHHHHHHhCC-------------------------CCeEeecCCCChhhhhhhhC
Q psy7789 158 IFAEKKQDVDAIHEYLLLKG-------------------------KPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 158 IF~~s~~~~~~l~~~L~~~~-------------------------~~~~~~h~~~~~~~R~~i~~ 197 (197)
|||+|++.|+.++..|.+.. ..+..+||+|++++|+.+++
T Consensus 241 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 241 VFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred EEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 99999999999999886531 24788999999999998863
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.82 E-value=7.4e-19 Score=154.95 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=125.8
Q ss_pred CCeeEEEEEcCCChHHhH---HHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQSL---DVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.++++..++|+.+..++. +.+.. .+||+||||. ++ .+.+.+++++++||||+|++ +......++.+
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~ 596 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFKDLGLLIIDEEQRF-----GVKQKEKLKEL 596 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcccCCEEEeeccccc-----chhHHHHHHhc
Confidence 479999999988755443 33444 5999999994 23 35567899999999999995 33345566777
Q ss_pred cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccH
Q psy7789 87 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDV 166 (197)
Q Consensus 87 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~ 166 (197)
+++.|+++||||..+..........+++..+...+.. +..+.+++.......-...+...+. .+++++||||+++++
T Consensus 597 ~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~i~~~i~~el~-~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 597 RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPELVREAIRRELL-RGGQVFYVHNRIESI 673 (926)
T ss_pred CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHHHHHHHHHHHH-cCCeEEEEECCcHHH
Confidence 7889999999998877776666666777777655433 2235554433222221223333333 346899999999999
Q ss_pred HHHHHHHHhC--CCCeEeecCCCChhhhhhhhC
Q psy7789 167 DAIHEYLLLK--GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 167 ~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+.+++.|++. ++++..+||+|++++|+++++
T Consensus 674 e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~ 706 (926)
T TIGR00580 674 EKLATQLRELVPEARIAIAHGQMTENELEEVML 706 (926)
T ss_pred HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHH
Confidence 9999999985 789999999999999998863
No 58
>KOG0344|consensus
Probab=99.81 E-value=6.5e-20 Score=149.74 Aligned_cols=163 Identities=23% Similarity=0.363 Sum_probs=148.1
Q ss_pred CCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhhcC-CCHHHHHHHHhhccC-CceEEEEeecCChhHHHHHHH
Q psy7789 34 GCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMVDM-GFEEDVRTIFSFFRG-QRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~~~~~~~ 109 (197)
.+||+|+||.++...+..+. +++..+.++|+||||.+++. .|..++..|++.+.+ +..+-+||||++.++.++++.
T Consensus 262 k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~ 341 (593)
T KOG0344|consen 262 KYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAEL 341 (593)
T ss_pred HHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHH
Confidence 48999999999999998765 78999999999999999998 899999999988864 557779999999999999999
Q ss_pred hcCCCeEEEeCCCCccCcceeEEEEEcC-chhhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHH-HhCCCCeEeecCC
Q psy7789 110 ALVKPITINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYL-LLKGKPFFTLKSL 186 (197)
Q Consensus 110 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L-~~~~~~~~~~h~~ 186 (197)
...++..+.++..++....+.|..++|. +..|+..+..++... .+|++||+.+.++|.+|++.| .-.++++..+||+
T Consensus 342 i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e 421 (593)
T KOG0344|consen 342 IKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGE 421 (593)
T ss_pred hhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecc
Confidence 9999999999988888889999999995 567999999999875 679999999999999999999 7779999999999
Q ss_pred CChhhhhhhh
Q psy7789 187 KEDQNNQTLE 196 (197)
Q Consensus 187 ~~~~~R~~i~ 196 (197)
.++.+|++.+
T Consensus 422 ~~~~qrde~~ 431 (593)
T KOG0344|consen 422 RSQKQRDETM 431 (593)
T ss_pred cchhHHHHHH
Confidence 9999999865
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.79 E-value=3.7e-18 Score=146.10 Aligned_cols=167 Identities=13% Similarity=0.191 Sum_probs=118.2
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCc
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQR 90 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~ 90 (197)
|+.+...+||.+. .+......+.+|+++||+. ....++++++||+||||.....+ +.+..+++..+ ..+
T Consensus 253 g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~~r 322 (675)
T PHA02653 253 GSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHIDKIR 322 (675)
T ss_pred CceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHHHHhhhhcC
Confidence 6788899999872 2222233368999999852 11247899999999999987653 44555554443 346
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC----------chhhHHHHHHHhh----cCCCCE
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK----------QEAKIVYLLECLQ----KTEPPV 156 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~----------~~~k~~~l~~~l~----~~~~~~ 156 (197)
|+++||||+++++..+ ..++++|..+.+... ....+.+++.... +.++.. +...+. ..++++
T Consensus 323 q~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 323 SLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTALKKYTPPKGSSG 398 (675)
T ss_pred EEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHH-HHHHHHHhhcccCCcE
Confidence 9999999999888776 578889988887532 2345666655332 122222 223332 234689
Q ss_pred EEEecccccHHHHHHHHHhC--CCCeEeecCCCChhhh
Q psy7789 157 LIFAEKKQDVDAIHEYLLLK--GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 157 lIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R 192 (197)
|||++++.+|+.+++.|.+. ++++..+||+|++.++
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq 436 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDE 436 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHH
Confidence 99999999999999999987 7999999999998643
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.78 E-value=1.1e-18 Score=141.01 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=106.0
Q ss_pred CcEEEeCchHHHHHHhcC----CccCC--CccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeecCChhHHHHH
Q psy7789 35 CHMMVATPGRLMDMLDKK----MVSLD--VCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFA 107 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~----~~~l~--~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~ 107 (197)
++|+++||+++...+... ...+. ..+++|+||+|.+.++++.. +..+++.++ .+.|++++|||+++.+.++.
T Consensus 95 ~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~ 173 (358)
T TIGR01587 95 DPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYA 173 (358)
T ss_pred CCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHH
Confidence 689999999999877641 11122 23799999999998764333 555555554 47899999999997777776
Q ss_pred HHhcCCCeEEEeCCCCccCcceeEEEEEc--CchhhHHHHHHHhhc--CCCCEEEEecccccHHHHHHHHHhCCC--CeE
Q psy7789 108 RSALVKPITINVGRAGAASMNVVQEVEYV--KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGK--PFF 181 (197)
Q Consensus 108 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~~l~~--~~~~~lIF~~s~~~~~~l~~~L~~~~~--~~~ 181 (197)
..+...+.......... .....+.+..+ ....+...+.++++. .++++||||||++.|+.+++.|++.+. ++.
T Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~ 252 (358)
T TIGR01587 174 EKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIM 252 (358)
T ss_pred hcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEE
Confidence 66544322111111100 00112222222 223445555555543 346899999999999999999998876 599
Q ss_pred eecCCCChhhhhhh
Q psy7789 182 TLKSLKEDQNNQTL 195 (197)
Q Consensus 182 ~~h~~~~~~~R~~i 195 (197)
.+||+|++.+|+++
T Consensus 253 ~~h~~~~~~~r~~~ 266 (358)
T TIGR01587 253 LLHSRFTEKDRAKK 266 (358)
T ss_pred EEECCCCHHHHHHH
Confidence 99999999999764
No 61
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.77 E-value=1.2e-17 Score=149.51 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=112.4
Q ss_pred hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhh-hhhcCCCHHH-HHHHHhhccCCceEEEEeecCChhHHHHHHH
Q psy7789 32 KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEAD-RMVDMGFEED-VRTIFSFFRGQRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad-~l~~~~~~~~-i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 109 (197)
+.+++|+++|||+|+..+..... +++++++|+|||| +.++.+|... +..++.. .++.|+++||||++.+ .+.+.
T Consensus 161 s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSATid~e--~fs~~ 236 (1294)
T PRK11131 161 SDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSATIDPE--RFSRH 236 (1294)
T ss_pred CCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEeeCCCCHH--HHHHH
Confidence 45699999999999999876554 8999999999999 5777776643 4444333 2478999999999753 55555
Q ss_pred hcCCCeEEEeCCCCccCcceeEEEEEcCc------hhhHHHHHHHh----hcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 110 ALVKPITINVGRAGAASMNVVQEVEYVKQ------EAKIVYLLECL----QKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 110 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l----~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
+...| .+.+..... .+.+.+..+.. .+.+..+.+.+ ....+++|||+++..+++.+++.|++.+++
T Consensus 237 F~~ap-vI~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~ 312 (1294)
T PRK11131 237 FNNAP-IIEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLR 312 (1294)
T ss_pred cCCCC-EEEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCC
Confidence 55455 455553321 24555554432 12333333332 233568999999999999999999988764
Q ss_pred ---eEeecCCCChhhhhhhh
Q psy7789 180 ---FFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 180 ---~~~~h~~~~~~~R~~i~ 196 (197)
+..+||+|++++|+++.
T Consensus 313 ~~~VlpLhg~Ls~~eQ~~Vf 332 (1294)
T PRK11131 313 HTEILPLYARLSNSEQNRVF 332 (1294)
T ss_pred cceEeecccCCCHHHHHHHh
Confidence 77899999999999875
No 62
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.77 E-value=3.1e-17 Score=142.05 Aligned_cols=174 Identities=13% Similarity=0.099 Sum_probs=112.9
Q ss_pred CCeeEEEEEcCCChHHh---HHHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQS---LDVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~---~~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.|+++..++||.+..+. .+.+.. .++|+||||+.+.+ ...+++++++|+||+|++.. .....+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~-----~qr~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV-----EQRLALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH-----HHHHHHHhc
Confidence 47999999999885443 344544 59999999977643 34578999999999999632 222333344
Q ss_pred cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhH-HHHHHHhhcCCCCEEEEeccc--
Q psy7789 87 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKI-VYLLECLQKTEPPVLIFAEKK-- 163 (197)
Q Consensus 87 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~~l~~~~~~~lIF~~s~-- 163 (197)
...+++++||||..+...........+...+.. ....+..+.+.+......++. ..+.+.+ ..+.+++|||+++
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~--~p~~r~~i~~~~~~~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie~ 483 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDE--LPPGRKPITTVVIPDSRRDEVYERIREEI-AKGRQAYVVCPLIEE 483 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEec--CCCCCCCcEEEEeCcccHHHHHHHHHHHH-HcCCcEEEEEccccc
Confidence 557899999999776654433221122222222 222223355544433332222 2333333 3456999999964
Q ss_pred ------ccHHHHHHHHHhC--CCCeEeecCCCChhhhhhhhC
Q psy7789 164 ------QDVDAIHEYLLLK--GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 164 ------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~~ 197 (197)
..++++++.|.+. ++++..+||+|++++|+++++
T Consensus 484 s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 525 (681)
T PRK10917 484 SEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMA 525 (681)
T ss_pred ccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHH
Confidence 4566788888876 578999999999999999874
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=5.3e-17 Score=130.93 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=108.1
Q ss_pred cCCcEEEeCchHHHHHHhcC-----Cc---cCCCccEEEeehhhhhhcCCC-----HHHHHHHHhhccCCceEEEEeecC
Q psy7789 33 KGCHMMVATPGRLMDMLDKK-----MV---SLDVCRYLCLDEADRMVDMGF-----EEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~-----~~---~l~~l~~vViDEad~l~~~~~-----~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
..|+|+++||+.+..++... .. .+..++++|+||+|.+..++. ......+++......+++++|||+
T Consensus 112 ~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~ 191 (357)
T TIGR03158 112 STPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATP 191 (357)
T ss_pred CCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCC
Confidence 46999999999998776431 11 257899999999999865321 122334444444467999999999
Q ss_pred ChhHHHHHHHh--cCCCeEEEeCCCC------------------ccCcceeEEEEEcCchhhHHHHH---HHh----hc-
Q psy7789 100 PKKIQNFARSA--LVKPITINVGRAG------------------AASMNVVQEVEYVKQEAKIVYLL---ECL----QK- 151 (197)
Q Consensus 100 ~~~~~~~~~~~--~~~~~~i~~~~~~------------------~~~~~i~~~~~~~~~~~k~~~l~---~~l----~~- 151 (197)
++.+.+..... ++.+.....+... ...+.+.+.++. ....|...+. +.+ +.
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~ 270 (357)
T TIGR03158 192 DPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQL 270 (357)
T ss_pred CHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhcc
Confidence 99888877765 4554433222200 011245554444 3333433332 222 22
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCC--CCeEeecCCCChhhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKG--KPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~R~~i 195 (197)
.++++||||||++.|+.+++.|++.| +.+..+||.+++++|+++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA 316 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh
Confidence 24589999999999999999999865 578899999999999865
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.77 E-value=2.8e-18 Score=148.69 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=132.2
Q ss_pred CCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC
Q psy7789 9 LPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG 88 (197)
Q Consensus 9 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~ 88 (197)
...|+||...+|+.+...+ .+. +++|+|+|||++..++++.......+++||+||+|.+.+...++.+..|+...+.
T Consensus 100 ~~~GirV~~~TgD~~~~~~--~l~-~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~ 176 (766)
T COG1204 100 EELGIRVGISTGDYDLDDE--RLA-RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR 176 (766)
T ss_pred HhcCCEEEEecCCcccchh--hhc-cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh
Confidence 3569999999999875552 232 4999999999999999988888999999999999999887777777777666643
Q ss_pred ---CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccC-cceeEEEEEcCchhh---------HHHHHHHhhcCCCC
Q psy7789 89 ---QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAAS-MNVVQEVEYVKQEAK---------IVYLLECLQKTEPP 155 (197)
Q Consensus 89 ---~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~~~k---------~~~l~~~l~~~~~~ 155 (197)
..|++.+|||++ +..+++.+.-.++......+..... ....+.+.......| ...++...-..+++
T Consensus 177 ~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~q 255 (766)
T COG1204 177 LNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQ 255 (766)
T ss_pred hCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCe
Confidence 479999999997 5677776666665543444333322 223333333332221 22222222234579
Q ss_pred EEEEecccccHHHHHHHHHhC---------------------C----------------CCeEeecCCCChhhhhhhhC
Q psy7789 156 VLIFAEKKQDVDAIHEYLLLK---------------------G----------------KPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L~~~---------------------~----------------~~~~~~h~~~~~~~R~~i~~ 197 (197)
+||||+|++.+...|..|++. + ..++.+|+||+.++|.-+++
T Consensus 256 vLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~ 334 (766)
T COG1204 256 VLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVED 334 (766)
T ss_pred EEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHH
Confidence 999999999999999999730 0 12678999999999998763
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.75 E-value=4.8e-17 Score=142.70 Aligned_cols=189 Identities=18% Similarity=0.227 Sum_probs=137.7
Q ss_pred cccCCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-C---CccCCCccEEEeehhhhhhcCCCHHHHHH
Q psy7789 6 ISALPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-K---MVSLDVCRYLCLDEADRMVDMGFEEDVRT 81 (197)
Q Consensus 6 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~---~~~l~~l~~vViDEad~l~~~~~~~~i~~ 81 (197)
.+..+.++++...+|+...++....+.++||||+++|.+|..++-. . .+.++++++||+||+|.+-.. |+.++..
T Consensus 139 ~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~vA~ 217 (851)
T COG1205 139 ISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEVAL 217 (851)
T ss_pred HHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-chhHHHH
Confidence 3455557999999999988888788889999999999999996532 2 334788999999999998654 6666665
Q ss_pred HHhhc-------cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEc-----------CchhhHH
Q psy7789 82 IFSFF-------RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYV-----------KQEAKIV 143 (197)
Q Consensus 82 i~~~~-------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-----------~~~~k~~ 143 (197)
+++++ +..+|+++.|||+... .+++..+........+.......+......+.- +...-..
T Consensus 218 llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~ 296 (851)
T COG1205 218 LLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELA 296 (851)
T ss_pred HHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHH
Confidence 55544 4588999999999755 556666666655554554444444444444433 1122334
Q ss_pred HHHHHhhcCCCCEEEEecccccHHHHH----HHHHhCC----CCeEeecCCCChhhhhhhh
Q psy7789 144 YLLECLQKTEPPVLIFAEKKQDVDAIH----EYLLLKG----KPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~~s~~~~~~l~----~~L~~~~----~~~~~~h~~~~~~~R~~i~ 196 (197)
.+...+-.++-++|+|+.+++.++.++ ..+...+ ..+..++|+|..++|.+|+
T Consensus 297 ~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 297 TLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIE 357 (851)
T ss_pred HHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHH
Confidence 555555566779999999999999998 4444445 6789999999999999876
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.73 E-value=2.7e-16 Score=135.28 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=109.1
Q ss_pred CCeeEEEEEcCCChHHhH---HHHh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQSL---DVIK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~---~~l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.|+++++++||.+..+.. +.+. +.++|+|+||+.+.+ ...+++++++|+||+|++... .+ ..+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~-qr---~~l~~~~ 381 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE-QR---KKLREKG 381 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-HH---HHHHHhc
Confidence 489999999998765533 3443 358999999987653 355789999999999996322 12 2222232
Q ss_pred c--CCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEec
Q psy7789 87 R--GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAE 161 (197)
Q Consensus 87 ~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~ 161 (197)
. ..+|++++|||..+....... ..+.....+.........+...+.. ...+ ..+.+.+.. .+.+++|||+
T Consensus 382 ~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~~~--~~~~-~~~~~~i~~~l~~g~q~~v~~~ 456 (630)
T TIGR00643 382 QGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVLIK--HDEK-DIVYEFIEEEIAKGRQAYVVYP 456 (630)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEEeC--cchH-HHHHHHHHHHHHhCCcEEEEEc
Confidence 2 268999999997665443321 1221111111111112234443332 2222 333443332 3568999998
Q ss_pred cc--------ccHHHHHHHHHhC--CCCeEeecCCCChhhhhhhhC
Q psy7789 162 KK--------QDVDAIHEYLLLK--GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 162 s~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.. ..++.+++.|.+. ++++..+||+|++++|+++++
T Consensus 457 ~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 502 (630)
T TIGR00643 457 LIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVME 502 (630)
T ss_pred cccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 76 4566788888764 788999999999999998864
No 67
>KOG0351|consensus
Probab=99.73 E-value=4.9e-17 Score=142.46 Aligned_cols=184 Identities=14% Similarity=0.181 Sum_probs=136.0
Q ss_pred CCCCeeEEEEEcCCChHHhHHH---Hh-c--CCcEEEeCchHHHHHH--hcCCccCCC---ccEEEeehhhhhhcCC--C
Q psy7789 9 LPIPLRTCLAIGGVPMNQSLDV---IK-K--GCHMMVATPGRLMDML--DKKMVSLDV---CRYLCLDEADRMVDMG--F 75 (197)
Q Consensus 9 ~~~~i~~~~~~gg~~~~~~~~~---l~-~--~~~Ili~TP~~l~~~l--~~~~~~l~~---l~~vViDEad~l~~~~--~ 75 (197)
...+|+...+.++.....+... +. + ..+|+..|||++...- .....++.. +.++||||||++.+|+ |
T Consensus 325 ~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 325 SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 4668999999999887655533 33 3 4799999999998642 333334444 8899999999999996 8
Q ss_pred HHHHHHHH---hhccCCceEEEEeecCChhHHHHHHHhcC--CCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhh
Q psy7789 76 EEDVRTIF---SFFRGQRQTLLFSATMPKKIQNFARSALV--KPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQ 150 (197)
Q Consensus 76 ~~~i~~i~---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~ 150 (197)
++.++.+. ..++ ...+++++||.+..+++-+-..++ ++.++ .....++++...+..-........+.+.++
T Consensus 405 Rp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~---~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~ 480 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELF---KSSFNRPNLKYEVSPKTDKDALLDILEESK 480 (941)
T ss_pred cHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCccee---cccCCCCCceEEEEeccCccchHHHHHHhh
Confidence 88877653 3333 478999999999998887666654 55433 233444555555444433444455555555
Q ss_pred cC--CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 151 KT--EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 151 ~~--~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.. ...+||||.++++|+.++..|+..|+++..+|+||++.+|+.|+
T Consensus 481 ~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 481 LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 44 34799999999999999999999999999999999999999885
No 68
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.71 E-value=2.1e-16 Score=117.86 Aligned_cols=107 Identities=46% Similarity=0.849 Sum_probs=98.1
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+..+....+.++++|+|+||+++.+.+.+....+++++++|+||+|.+.+.++...+..++..++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~ 175 (203)
T cd00268 96 TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDR 175 (203)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCccc
Confidence 37899999999988877777777899999999999999988888899999999999999998889999999999999899
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEE
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITI 117 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i 117 (197)
|++++|||+++++......++.+|..+
T Consensus 176 ~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 176 QTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999998765
No 69
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.68 E-value=1.2e-15 Score=137.27 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=111.8
Q ss_pred hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhh-hhhcCCCHHH-HHHHHhhccCCceEEEEeecCChhHHHHHHH
Q psy7789 32 KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEAD-RMVDMGFEED-VRTIFSFFRGQRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad-~l~~~~~~~~-i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 109 (197)
+.+.+|.++|||.|+..+.... .++++++||||||| +.++.++... +..++... ++.|+++||||++. ..+.+.
T Consensus 154 s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~ 229 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRH 229 (1283)
T ss_pred CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHH
Confidence 3468999999999999987655 47999999999999 5777776654 56665444 57899999999974 345555
Q ss_pred hcCCCeEEEeCCCCccCcceeEEEEEcCc------hhhHHHHHHHh----hcCCCCEEEEecccccHHHHHHHHHhCC--
Q psy7789 110 ALVKPITINVGRAGAASMNVVQEVEYVKQ------EAKIVYLLECL----QKTEPPVLIFAEKKQDVDAIHEYLLLKG-- 177 (197)
Q Consensus 110 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l----~~~~~~~lIF~~s~~~~~~l~~~L~~~~-- 177 (197)
+...| .+.+..... .+...+..... .++...+.+.+ ....+++|||+++..+++.+++.|.+.+
T Consensus 230 F~~ap-vI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~ 305 (1283)
T TIGR01967 230 FNNAP-IIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLR 305 (1283)
T ss_pred hcCCC-EEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCC
Confidence 54445 455543221 23333333321 12333333333 3445789999999999999999999875
Q ss_pred -CCeEeecCCCChhhhhhhh
Q psy7789 178 -KPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 178 -~~~~~~h~~~~~~~R~~i~ 196 (197)
+.+..+||+|++++|+++.
T Consensus 306 ~~~VlpLhg~Ls~~eQ~~vf 325 (1283)
T TIGR01967 306 HTEILPLYARLSNKEQQRVF 325 (1283)
T ss_pred CcEEEeccCCCCHHHHHHHh
Confidence 4588999999999998874
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.67 E-value=4.7e-16 Score=130.67 Aligned_cols=169 Identities=8% Similarity=0.074 Sum_probs=106.8
Q ss_pred eeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceE
Q psy7789 13 LRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~ 92 (197)
..+..+.||.... .+++|+|+||+++..... ..+++++++|+||||++... .+..++..+++.+|+
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~ 252 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFK 252 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceE
Confidence 3444566665432 247999999999876432 24689999999999999653 456777778778899
Q ss_pred EEEeecCChhHHHH--HHHhcCCCeEEEeCC---------------------CCccCcceeEE-----E-EEcCchhhHH
Q psy7789 93 LLFSATMPKKIQNF--ARSALVKPITINVGR---------------------AGAASMNVVQE-----V-EYVKQEAKIV 143 (197)
Q Consensus 93 i~~SAT~~~~~~~~--~~~~~~~~~~i~~~~---------------------~~~~~~~i~~~-----~-~~~~~~~k~~ 143 (197)
+++|||.+...... ...++. |+...+.. ........... + ..+..+.+..
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~ 331 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNK 331 (501)
T ss_pred EEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHH
Confidence 99999986432111 111111 11111110 00000000000 0 0112223444
Q ss_pred HHHHHhh---cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 144 YLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 144 ~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+.+++. ..+.+++|||++.++++.+++.|++.|.++..+||+|++++|++++
T Consensus 332 ~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 332 WIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 4444432 3456899999999999999999999999999999999999999865
No 71
>KOG0952|consensus
Probab=99.63 E-value=2.3e-15 Score=130.10 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=129.6
Q ss_pred cccccC-CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC---CccCCCccEEEeehhhhhhcCCCHHHH
Q psy7789 4 PFISAL-PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK---MVSLDVCRYLCLDEADRMVDMGFEEDV 79 (197)
Q Consensus 4 ~~~~~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~---~~~l~~l~~vViDEad~l~~~~~~~~i 79 (197)
+|.+++ ++||+|.-+||+....+-. +. .++|||+|||+.--..++. .--++.+++|||||+|.|-+. .++.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te--i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvl 258 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE--IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVL 258 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH--HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchH
Confidence 344444 4799999999997654333 22 2999999999975444332 223688999999999998665 77777
Q ss_pred HHHHhhcc-------CCceEEEEeecCChhHHHHHHHhcC-C-CeEEEeCCCCccCcceeEEEEEcCch---h-------
Q psy7789 80 RTIFSFFR-------GQRQTLLFSATMPKKIQNFARSALV-K-PITINVGRAGAASMNVVQEVEYVKQE---A------- 140 (197)
Q Consensus 80 ~~i~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~i~~~~~~~~~~---~------- 140 (197)
+.|..++. ...+++++|||+| +..+.+ .|++ | +..+...+..-.+..+.+.++..... .
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlP-N~eDvA-~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~ 336 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLP-NYEDVA-RFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDE 336 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCC-CHHHHH-HHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHH
Confidence 77765552 4568999999997 444444 4554 3 35666666666677788888776543 1
Q ss_pred -hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC----C-------------------CCeEeecCCCChhhhhhhh
Q psy7789 141 -KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----G-------------------KPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 141 -k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~----~-------------------~~~~~~h~~~~~~~R~~i~ 196 (197)
..+.+.+.+.+ +.+++|||.++..+...|+.|.+. | ...+.+|+||..++|.-++
T Consensus 337 ~~~~kv~e~~~~-g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 337 VCYDKVVEFLQE-GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHHHHHc-CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 22344444443 469999999999999999988643 1 1256889999999998665
No 72
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.59 E-value=1.3e-14 Score=104.94 Aligned_cols=95 Identities=23% Similarity=0.492 Sum_probs=80.0
Q ss_pred CCeeEEEEEcCCChH-HhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-
Q psy7789 11 IPLRTCLAIGGVPMN-QSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG- 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~-~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~- 88 (197)
.++++..++||.+.. .+...+.++++|+|+||+++.+++.....++.+++++|+||+|.+..+++...+..+++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF 150 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC
Confidence 468999999998865 455566677999999999999999876557788999999999999998888889999888743
Q ss_pred -CceEEEEeecCChhHHH
Q psy7789 89 -QRQTLLFSATMPKKIQN 105 (197)
Q Consensus 89 -~~q~i~~SAT~~~~~~~ 105 (197)
+.|++++|||+++.+..
T Consensus 151 ~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 151 KNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTSEEEEEESSSTHHHHH
T ss_pred CCCcEEEEeeCCChhHhh
Confidence 58999999999955543
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.55 E-value=3.6e-13 Score=118.89 Aligned_cols=86 Identities=20% Similarity=0.151 Sum_probs=65.7
Q ss_pred eeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceE
Q psy7789 13 LRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~ 92 (197)
.++..++|+.+.....+.+ ..++|+|+||+.+...+..+.+.+.+++++|+||||++.+......+........+.+++
T Consensus 87 ~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred ceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 4788888887766444334 458999999999998887788889999999999999987654444444444444457789
Q ss_pred EEEeecC
Q psy7789 93 LLFSATM 99 (197)
Q Consensus 93 i~~SAT~ 99 (197)
+++|||.
T Consensus 166 l~lTaTP 172 (773)
T PRK13766 166 LGLTASP 172 (773)
T ss_pred EEEEcCC
Confidence 9999996
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1.5e-13 Score=119.06 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=55.5
Q ss_pred EEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 133 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++..++|...+.+.+.. .+.|+||||+|++.++.+++.|.+.|+++..+||++++++|..+.
T Consensus 405 ~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~ 471 (790)
T PRK09200 405 KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIA 471 (790)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHH
Confidence 4456778899999988865 356899999999999999999999999999999999998887653
No 75
>KOG0947|consensus
Probab=99.54 E-value=5.7e-14 Score=120.70 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=77.9
Q ss_pred EEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 17 LAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 17 ~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
++||+..+... +.++|+|.|.|.+|+.++.--.+++++||+||+|.+.+...+-.+++++-++|...++|++|
T Consensus 369 LlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLS 441 (1248)
T KOG0947|consen 369 LLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLS 441 (1248)
T ss_pred eeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEe
Confidence 78887765544 88999999999999998877789999999999999999889999999999999999999999
Q ss_pred ecCChhHHHHHHHhcC
Q psy7789 97 ATMPKKIQNFARSALV 112 (197)
Q Consensus 97 AT~~~~~~~~~~~~~~ 112 (197)
||.| +..+++.+..+
T Consensus 442 ATVP-N~~EFA~WIGR 456 (1248)
T KOG0947|consen 442 ATVP-NTLEFADWIGR 456 (1248)
T ss_pred ccCC-ChHHHHHHhhh
Confidence 9997 55677777665
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.54 E-value=3e-13 Score=113.54 Aligned_cols=174 Identities=13% Similarity=0.094 Sum_probs=122.4
Q ss_pred CCeeEEEEEcCCChHH---hHHHHhcC-CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQ---SLDVIKKG-CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~---~~~~l~~~-~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.||+++.++|...... ..+.+.+| .||+||| +.+.+....++++.++|+||-|++ +-.-+..+..-
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQHRF-----GV~QR~~L~~K 407 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQHRF-----GVHQRLALREK 407 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEeccccc-----cHHHHHHHHHh
Confidence 4899999999975333 33445444 9999999 777778889999999999999995 65555666555
Q ss_pred cC-CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhh-HHHHHHHhhcCCCCEEEEecccc
Q psy7789 87 RG-QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAK-IVYLLECLQKTEPPVLIFAEKKQ 164 (197)
Q Consensus 87 ~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k-~~~l~~~l~~~~~~~lIF~~s~~ 164 (197)
.. .+..++||||- -.+..+-..+.+...-.++.-+.-+..|...++.....++ ...+...+. .+.|+.+-|+-++
T Consensus 408 G~~~Ph~LvMTATP--IPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~-~GrQaY~VcPLIe 484 (677)
T COG1200 408 GEQNPHVLVMTATP--IPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA-KGRQAYVVCPLIE 484 (677)
T ss_pred CCCCCcEEEEeCCC--chHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH-cCCEEEEEecccc
Confidence 55 68899999993 3455555666665444444444444556666665433222 233333333 4568999997654
Q ss_pred --------cHHHHHHHHHhC--CCCeEeecCCCChhhhhhhhC
Q psy7789 165 --------DVDAIHEYLLLK--GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 165 --------~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.|+++++.|+.. ++++..+||.|+.+++++||.
T Consensus 485 ESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~ 527 (677)
T COG1200 485 ESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVME 527 (677)
T ss_pred ccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHH
Confidence 566778888854 678999999999999999873
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.53 E-value=6.5e-13 Score=114.43 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=56.0
Q ss_pred EEEcCchhhHHHHHHHhhcC---CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 133 VEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++...+|...+.+.+++. +.|+||||+|++.++.++..|.+.|+++..+||++++++|..+.
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~ 467 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIA 467 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHH
Confidence 56677888999999888652 45899999999999999999999999999999999999887653
No 78
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=6.3e-13 Score=115.60 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=55.7
Q ss_pred EEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 133 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.++....+|...+.+.+.+ .+.|+||||+|++.++.++..|.+.|++...+||++++.+|+.|.
T Consensus 421 ~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia 487 (896)
T PRK13104 421 LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIA 487 (896)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHH
Confidence 4556677888888877753 356899999999999999999999999999999999999998875
No 79
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=3.8e-13 Score=114.44 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=82.4
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC---CCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~ 167 (197)
++..||||.+.+..++...|..+++.|.... .......+.++++...+|...+.+.++.. +.++||||+|++.++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k--p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR--PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC--CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 4567999999888888888888866654432 22333555567788889999999999763 468999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+++.|.+.|+++..+||++++.++..+
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~rE~~ii 515 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDAEEAAIV 515 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHHHHHHHH
Confidence 9999999999999999999877776544
No 80
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.50 E-value=9.2e-13 Score=106.95 Aligned_cols=106 Identities=21% Similarity=0.149 Sum_probs=83.4
Q ss_pred eeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceE
Q psy7789 13 LRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~ 92 (197)
-.++.++|..+.++....|.. .+|+|+||+-+..-+..+.++++++.++||||||+-.+++..-.+..-.-...+++.+
T Consensus 87 ~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~i 165 (542)
T COG1111 87 DEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLI 165 (542)
T ss_pred hheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceE
Confidence 467789999998888888876 7899999999999999999999999999999999988876666666554555578899
Q ss_pred EEEeecCCh---hHHHHHHHhcCCCeEEEe
Q psy7789 93 LLFSATMPK---KIQNFARSALVKPITINV 119 (197)
Q Consensus 93 i~~SAT~~~---~~~~~~~~~~~~~~~i~~ 119 (197)
+++|||-.. .+.++++.+.-+.+.+..
T Consensus 166 lgLTASPGs~~ekI~eV~~nLgIe~vevrT 195 (542)
T COG1111 166 LGLTASPGSDLEKIQEVVENLGIEKVEVRT 195 (542)
T ss_pred EEEecCCCCCHHHHHHHHHhCCcceEEEec
Confidence 999999643 355556555544444444
No 81
>KOG0352|consensus
Probab=99.49 E-value=1.8e-14 Score=114.67 Aligned_cols=159 Identities=17% Similarity=0.166 Sum_probs=112.7
Q ss_pred CCcEEEeCchHHHHHHhc----CCccCCCccEEEeehhhhhhcCC--CHHHHHHHHhhc--cCCceEEEEeecCChhHHH
Q psy7789 34 GCHMMVATPGRLMDMLDK----KMVSLDVCRYLCLDEADRMVDMG--FEEDVRTIFSFF--RGQRQTLLFSATMPKKIQN 105 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~----~~~~l~~l~~vViDEad~l~~~~--~~~~i~~i~~~~--~~~~q~i~~SAT~~~~~~~ 105 (197)
+..++.-|||....-..+ ...+-.-+.|+|+||||++.+|| |++++..+-..- -+....++++||.++++.+
T Consensus 113 ~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqE 192 (641)
T KOG0352|consen 113 TIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQE 192 (641)
T ss_pred ceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHH
Confidence 468999999987654322 33345678899999999999996 888776653222 2477899999999999888
Q ss_pred HH--HHhcCCCeEEEeCCCCccCcceeEEEEEcC----chhhHHHHHHHhhc----------C----CCCEEEEeccccc
Q psy7789 106 FA--RSALVKPITINVGRAGAASMNVVQEVEYVK----QEAKIVYLLECLQK----------T----EPPVLIFAEKKQD 165 (197)
Q Consensus 106 ~~--~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~----~~~k~~~l~~~l~~----------~----~~~~lIF~~s~~~ 165 (197)
-+ ..-+++|+-+...+.- +.+ .|+.+. -++-+..|.++-.. . .+..||||.|+..
T Consensus 193 Di~~qL~L~~PVAiFkTP~F--R~N---LFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~ 267 (641)
T KOG0352|consen 193 DIAFQLKLRNPVAIFKTPTF--RDN---LFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNE 267 (641)
T ss_pred HHHHHHhhcCcHHhccCcch--hhh---hhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHH
Confidence 54 4455677665443222 121 222221 12334444444321 1 2358999999999
Q ss_pred HHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 166 VDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
||.++-.|..+|+++..+|+||...||.+|+|
T Consensus 268 cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 268 CEQVAIMLEIAGIPAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred HHHHHHHhhhcCcchHHHhcccccchhHHHHH
Confidence 99999999999999999999999999999874
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.47 E-value=9.7e-13 Score=115.78 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=96.1
Q ss_pred CcEEEeCchHHHHHHhcC-CccCCCc----cEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeecCChhHHHHHH
Q psy7789 35 CHMMVATPGRLMDMLDKK-MVSLDVC----RYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFAR 108 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~-~~~l~~l----~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~ 108 (197)
.+|+|||+.+++..+-.. ...++.+ +.|||||+|.+-. .....+..+++.+. ....+|++|||+|+..++...
T Consensus 411 api~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred CCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 699999999999654322 1122222 4899999999833 34445566666553 356799999999988765443
Q ss_pred H-hcCC-C--------eEEE----------eCCCCc---cCcceeEEEEEcCc-hhhHHHHHHHhh--cCCCCEEEEecc
Q psy7789 109 S-ALVK-P--------ITIN----------VGRAGA---ASMNVVQEVEYVKQ-EAKIVYLLECLQ--KTEPPVLIFAEK 162 (197)
Q Consensus 109 ~-~~~~-~--------~~i~----------~~~~~~---~~~~i~~~~~~~~~-~~k~~~l~~~l~--~~~~~~lIF~~s 162 (197)
. +... + .... ...... .+..+.-....... ......+..+++ ..+++++|||||
T Consensus 490 ~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NT 569 (878)
T PRK09694 490 DTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNL 569 (878)
T ss_pred HHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3 3211 0 0000 000000 00001100111111 111222222322 234689999999
Q ss_pred cccHHHHHHHHHhCC---CCeEeecCCCChhhhhhhh
Q psy7789 163 KQDVDAIHEYLLLKG---KPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~R~~i~ 196 (197)
++.|+++++.|++.+ .++..+||.+++.+|++++
T Consensus 570 V~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E 606 (878)
T PRK09694 570 VDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKE 606 (878)
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHH
Confidence 999999999999875 6899999999999997654
No 83
>KOG0951|consensus
Probab=99.46 E-value=5.3e-13 Score=117.49 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=125.8
Q ss_pred cCCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhhcCCCHHHHHHHHhh
Q psy7789 8 ALPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMVDMGFEEDVRTIFSF 85 (197)
Q Consensus 8 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~ 85 (197)
..+.||+|+-.+|+.....+. + .+..|+++|||+--...+++. --..-++++|+||.|.+-++ .++.++.|..+
T Consensus 388 la~~GI~V~ElTgD~~l~~~q--i-eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaR 463 (1674)
T KOG0951|consen 388 LAPLGITVLELTGDSQLGKEQ--I-EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVAR 463 (1674)
T ss_pred ccccCcEEEEecccccchhhh--h-hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHH
Confidence 445799999999987644332 1 148899999999755554321 11345678999999988654 67777666544
Q ss_pred c-------cCCceEEEEeecCChhHHHHHHHhcC-CCeEEEeCCCCccCcceeEEEEEcCchh---hHHHHHHHh-----
Q psy7789 86 F-------RGQRQTLLFSATMPKKIQNFARSALV-KPITINVGRAGAASMNVVQEVEYVKQEA---KIVYLLECL----- 149 (197)
Q Consensus 86 ~-------~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~~l----- 149 (197)
+ ....+.+.+|||+|.. .+ +..|++ ++..+.-.+..-.+..+.|+++.+.+.. +++.+.+..
T Consensus 464 t~r~ses~~e~~RlVGLSATLPNy-~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm 541 (1674)
T KOG0951|consen 464 TFRRSESTEEGSRLVGLSATLPNY-ED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVL 541 (1674)
T ss_pred HHHHhhhcccCceeeeecccCCch-hh-hHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHH
Confidence 4 2367899999999843 22 334444 3344445555566677999999886543 333333332
Q ss_pred hcC-CCCEEEEecccccHHHHHHHHHh-------------------------------------CCCCeEeecCCCChhh
Q psy7789 150 QKT-EPPVLIFAEKKQDVDAIHEYLLL-------------------------------------KGKPFFTLKSLKEDQN 191 (197)
Q Consensus 150 ~~~-~~~~lIF~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~~h~~~~~~~ 191 (197)
+.- +.|+|||+.+++++-+.|..+++ .-+.++.+|+||+..+
T Consensus 542 ~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~d 621 (1674)
T KOG0951|consen 542 EHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKD 621 (1674)
T ss_pred HhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcch
Confidence 322 35899999999999888888762 0245889999999999
Q ss_pred hhhhhC
Q psy7789 192 NQTLEN 197 (197)
Q Consensus 192 R~~i~~ 197 (197)
|+.+++
T Consensus 622 R~~~Ed 627 (1674)
T KOG0951|consen 622 RELVED 627 (1674)
T ss_pred HHHHHH
Confidence 998864
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.46 E-value=2.1e-12 Score=110.79 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=49.5
Q ss_pred EEEcCchhhHHHHHHHhh---cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 133 VEYVKQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.++....+|...+.+.+. ..+.|+||||+|+..++.++..|.+.|++...+||+ +.+|++.
T Consensus 382 ~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ 445 (745)
T TIGR00963 382 LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAE 445 (745)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHH
Confidence 345566778888877664 335689999999999999999999999999999999 6666653
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2.4e-12 Score=111.78 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=51.6
Q ss_pred EEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 133 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.++....+|...+.+.+.+ .+.|+||||+|+..++.++..|.+.|+++..+||+ +.+|++.
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~ 470 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAE 470 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHH
Confidence 4556778899999988865 34589999999999999999999999999999996 6667654
No 86
>KOG0948|consensus
Probab=99.40 E-value=8.2e-13 Score=111.38 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=108.0
Q ss_pred EEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEE
Q psy7789 15 TCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLL 94 (197)
Q Consensus 15 ~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~ 94 (197)
|.+.+|+..+. ..+..+|+|.|.|.+|+.++.--++.+..||+||+|.+-+...+-.|++-+-.+|++.+.++
T Consensus 199 VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 199 VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVF 271 (1041)
T ss_pred cceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEE
Confidence 44556655443 23889999999999999999888999999999999999998888889988899999999999
Q ss_pred EeecCChhHHHHHHHhc---CCCeEEEeCCCCccCcceeEEEEEc---------Cc-----hhhH---------------
Q psy7789 95 FSATMPKKIQNFARSAL---VKPITINVGRAGAASMNVVQEVEYV---------KQ-----EAKI--------------- 142 (197)
Q Consensus 95 ~SAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~i~~~~~~~---------~~-----~~k~--------------- 142 (197)
+|||+| +..+++++.. +.|-.+.-.+-. +-.+.|+.+.. .+ ++.+
T Consensus 272 LSATiP-NA~qFAeWI~~ihkQPcHVVYTdyR--PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 272 LSATIP-NARQFAEWICHIHKQPCHVVYTDYR--PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EeccCC-CHHHHHHHHHHHhcCCceEEeecCC--CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 999997 4566666654 455444433322 22234432221 11 1112
Q ss_pred -----------------------HHHHHHhhc-CCCCEEEEecccccHHHHHHHHHhCC
Q psy7789 143 -----------------------VYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKG 177 (197)
Q Consensus 143 -----------------------~~l~~~l~~-~~~~~lIF~~s~~~~~~l~~~L~~~~ 177 (197)
..++..+.. .-.|+|||+-|+++|+.+|..+.+..
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kld 407 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLD 407 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCc
Confidence 222222222 23489999999999999999886543
No 87
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.29 E-value=3.4e-11 Score=106.24 Aligned_cols=97 Identities=23% Similarity=0.276 Sum_probs=78.6
Q ss_pred EEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 16 CLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 16 ~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
.+++|+.+++ +++.++|+|.|.|.+|+..+...+..+..||+||+|.+.+...+..++.++-++|...|++++
T Consensus 194 GL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~L 266 (1041)
T COG4581 194 GLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFL 266 (1041)
T ss_pred cceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEE
Confidence 4566655444 348999999999999999998999999999999999999988999999999999999999999
Q ss_pred eecCChhHHHHHHHhc---CCCeEEEeC
Q psy7789 96 SATMPKKIQNFARSAL---VKPITINVG 120 (197)
Q Consensus 96 SAT~~~~~~~~~~~~~---~~~~~i~~~ 120 (197)
|||++.. .++..++. ..|..+...
T Consensus 267 SATv~N~-~EF~~Wi~~~~~~~~~vv~t 293 (1041)
T COG4581 267 SATVPNA-EEFAEWIQRVHSQPIHVVST 293 (1041)
T ss_pred eCCCCCH-HHHHHHHHhccCCCeEEEee
Confidence 9999743 45444444 344444443
No 88
>KOG0353|consensus
Probab=99.29 E-value=1.6e-11 Score=96.98 Aligned_cols=182 Identities=14% Similarity=0.200 Sum_probs=128.3
Q ss_pred CCeeEEEEEcCCChHHhH---HHHhc---CCcEEEeCchHHHHH---Hh--cCCccCCCccEEEeehhhhhhcCC--CHH
Q psy7789 11 IPLRTCLAIGGVPMNQSL---DVIKK---GCHMMVATPGRLMDM---LD--KKMVSLDVCRYLCLDEADRMVDMG--FEE 77 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~---~~l~~---~~~Ili~TP~~l~~~---l~--~~~~~l~~l~~vViDEad~l~~~~--~~~ 77 (197)
+||...++-...+.++-. ..+.+ ...++..||+++... +. .+.+....++++.+||+|+-.+|| |++
T Consensus 157 lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~ 236 (695)
T KOG0353|consen 157 LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRP 236 (695)
T ss_pred hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCc
Confidence 466666666555544322 22322 378999999998742 22 256677899999999999999986 777
Q ss_pred HHH--HHHhhccCCceEEEEeecCChhHHHHHHHhcC--CCeEEEeCCCCccCcceeEEEEEcC--chhhHHHHHHHhhc
Q psy7789 78 DVR--TIFSFFRGQRQTLLFSATMPKKIQNFARSALV--KPITINVGRAGAASMNVVQEVEYVK--QEAKIVYLLECLQK 151 (197)
Q Consensus 78 ~i~--~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~~l~~ 151 (197)
.+. .|+++.-++..++.++||.+..+..-++..+. ....+. ..-.+++++..+...+ +++=...+..+++.
T Consensus 237 dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~---a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~ 313 (695)
T KOG0353|consen 237 DYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR---AGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKG 313 (695)
T ss_pred chHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee---cccCCCCceeEeeeCCCChHHHHHHHHHHhcc
Confidence 665 45666667889999999999887776665543 112221 2233455665555443 33445666666664
Q ss_pred C--CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 152 T--EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 152 ~--~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
. +...||||-|+++|+.++..|+++|+.+..+|+.|.+++|..+
T Consensus 314 ~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 314 DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccc
Confidence 3 3468999999999999999999999999999999999998754
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.28 E-value=3.6e-10 Score=98.21 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=107.0
Q ss_pred CeeEEEEEcCCChHHhHHHH----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC-----C-HHHHHH
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG-----F-EEDVRT 81 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~-----~-~~~i~~ 81 (197)
|.++..++||.+..++.+.+ .+.++|+||||+.++ ..+++++++|+||+|....++ | ...+.
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va- 286 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA- 286 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-
Confidence 67899999998876655443 245899999998764 347899999999999875332 1 11222
Q ss_pred HHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchh-------hHHHHHHHhhc---
Q psy7789 82 IFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEA-------KIVYLLECLQK--- 151 (197)
Q Consensus 82 i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-------k~~~l~~~l~~--- 151 (197)
+.+....+.|++++|||.+.+....+.. .....+...............++...... -...+.+.+++
T Consensus 287 ~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 287 VVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 2333446889999999987665554421 12233333322211111111222221110 11334444443
Q ss_pred CCCCEEEEeccc------------------------------------------------------------ccHHHHHH
Q psy7789 152 TEPPVLIFAEKK------------------------------------------------------------QDVDAIHE 171 (197)
Q Consensus 152 ~~~~~lIF~~s~------------------------------------------------------------~~~~~l~~ 171 (197)
.+.|+|+|+|++ ..++.+++
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e 444 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEE 444 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHH
Confidence 345899998852 26778899
Q ss_pred HHHhC--CCCeEeecCCCCh--hhhhhhh
Q psy7789 172 YLLLK--GKPFFTLKSLKED--QNNQTLE 196 (197)
Q Consensus 172 ~L~~~--~~~~~~~h~~~~~--~~R~~i~ 196 (197)
.|++. +.++..+|+++.+ ++|++++
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l 473 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLL 473 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHH
Confidence 99887 8899999999974 4566553
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=3.7e-10 Score=94.95 Aligned_cols=171 Identities=12% Similarity=0.114 Sum_probs=104.2
Q ss_pred CeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC-----C-HHHHHH
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG-----F-EEDVRT 81 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~-----~-~~~i~~ 81 (197)
|.+++.++|+.+..+..+.+. +.++|+|||+..++ ..+++++++||||.|....++ | ...+..
T Consensus 50 ~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~ 122 (505)
T TIGR00595 50 GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV 122 (505)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH
Confidence 567889999987655544432 45899999997664 246889999999999886432 1 122333
Q ss_pred HHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchh----hHHHHHHHhhc---CCC
Q psy7789 82 IFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEA----KIVYLLECLQK---TEP 154 (197)
Q Consensus 82 i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~~l~~---~~~ 154 (197)
.... ..+.+++++|||.+.+....+.. +....+...............++....+. -...+++.+++ .++
T Consensus 123 ~ra~-~~~~~vil~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~ 199 (505)
T TIGR00595 123 YRAK-KFNCPVVLGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGE 199 (505)
T ss_pred HHHH-hcCCCEEEEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCC
Confidence 3333 35889999999976554443321 12223333221111111122222222221 12334444432 246
Q ss_pred CEEEEeccccc------------------------------------------------------------HHHHHHHHH
Q psy7789 155 PVLIFAEKKQD------------------------------------------------------------VDAIHEYLL 174 (197)
Q Consensus 155 ~~lIF~~s~~~------------------------------------------------------------~~~l~~~L~ 174 (197)
++|||+|++.. ++.+++.|+
T Consensus 200 qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~ 279 (505)
T TIGR00595 200 QSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELA 279 (505)
T ss_pred cEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHH
Confidence 89999887643 588899998
Q ss_pred hC--CCCeEeecCCCChhhh
Q psy7789 175 LK--GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 175 ~~--~~~~~~~h~~~~~~~R 192 (197)
+. +.++..+|++++..++
T Consensus 280 ~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 280 KLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred hhCCCCcEEEEecccccCcc
Confidence 87 7899999999988765
No 91
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.2e-10 Score=100.15 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=111.9
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhh-hhcCCCHH-HHHHHHhhccCCceEEEEeecCChhHHHHHHHhc
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR-MVDMGFEE-DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSAL 111 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~-l~~~~~~~-~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 111 (197)
...|-++|.|.|+..+.+..+ |+.++++||||||. .++.++.- .+..++...+++.++|+||||+. .+....++
T Consensus 139 ~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld---~~rfs~~f 214 (845)
T COG1643 139 RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD---AERFSAYF 214 (845)
T ss_pred CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC---HHHHHHHc
Confidence 467999999999999986665 79999999999995 34433332 34566677777899999999998 44455677
Q ss_pred CCCeEEEeCCCCccCcceeEEEEEcC-chh-hHH----HHHHHhhcCCCCEEEEecccccHHHHHHHHHh----CCCCeE
Q psy7789 112 VKPITINVGRAGAASMNVVQEVEYVK-QEA-KIV----YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGKPFF 181 (197)
Q Consensus 112 ~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~-k~~----~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~----~~~~~~ 181 (197)
.+.-.+.+....- .+..+|.... .++ -.. .+...+.+..+.+|||.+-..+.+.+++.|.+ ....+.
T Consensus 215 ~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~ 291 (845)
T COG1643 215 GNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEIL 291 (845)
T ss_pred CCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEe
Confidence 7665665543321 2444443332 223 222 33333445567899999999999999999998 357899
Q ss_pred eecCCCChhhhhhhh
Q psy7789 182 TLKSLKEDQNNQTLE 196 (197)
Q Consensus 182 ~~h~~~~~~~R~~i~ 196 (197)
++||.|+.++..++.
T Consensus 292 PLy~~L~~~eQ~rvF 306 (845)
T COG1643 292 PLYGALSAEEQVRVF 306 (845)
T ss_pred eccccCCHHHHHhhc
Confidence 999999999988874
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=3.1e-10 Score=99.01 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=54.6
Q ss_pred EEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 133 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.++....+|...+.+-+.+ .+.|+||||+|+..++.++..|...|++...+|+++++.+|+.|.
T Consensus 426 ~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~ 492 (908)
T PRK13107 426 LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVA 492 (908)
T ss_pred cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHH
Confidence 3445667788887777764 356899999999999999999999999999999999999998875
No 93
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.18 E-value=8.5e-10 Score=80.91 Aligned_cols=108 Identities=32% Similarity=0.578 Sum_probs=87.9
Q ss_pred eEEEEEcCCChHHhHHHHhcCC-cEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceE
Q psy7789 14 RTCLAIGGVPMNQSLDVIKKGC-HMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92 (197)
Q Consensus 14 ~~~~~~gg~~~~~~~~~l~~~~-~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~ 92 (197)
......++.........+..+. +++++||+.+.+.+.........++++|+||+|.+....+...+..++..+++..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 163 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQL 163 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceE
Confidence 3444555555455555565555 999999999999998777778899999999999998766888999999988889999
Q ss_pred EEEeecCChhHHHHHHHhcCCCeEEEeCC
Q psy7789 93 LLFSATMPKKIQNFARSALVKPITINVGR 121 (197)
Q Consensus 93 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 121 (197)
+++|||.++........++.+...+....
T Consensus 164 v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 164 LLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 99999999999999999988777666554
No 94
>KOG0950|consensus
Probab=99.16 E-value=1e-10 Score=101.23 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=64.0
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc--CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc---
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK--KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF--- 86 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~--- 86 (197)
|+.+...+|+.+.....+. -++-|||.|+-..+++. +.-.+..+.+||+||.|.+.+.+.+..++.++..+
T Consensus 297 G~~ve~y~g~~~p~~~~k~----~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKRRKR----ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred CCcchhhcccCCCCCcccc----eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 5555555566655544433 67999999999887753 23346889999999999999998888887776554
Q ss_pred --cCCceEEEEeecCCh
Q psy7789 87 --RGQRQTLLFSATMPK 101 (197)
Q Consensus 87 --~~~~q~i~~SAT~~~ 101 (197)
....|+|.+|||++.
T Consensus 373 ~~~~~~~iIGMSATi~N 389 (1008)
T KOG0950|consen 373 NLETSVQIIGMSATIPN 389 (1008)
T ss_pred ccccceeEeeeecccCC
Confidence 234579999999973
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.15 E-value=1.8e-09 Score=95.86 Aligned_cols=176 Identities=15% Similarity=0.101 Sum_probs=131.8
Q ss_pred CCCCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHh
Q psy7789 9 LPIPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFS 84 (197)
Q Consensus 9 ~~~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~ 84 (197)
.|.+|++..+.-=.+..++.+.++ +..|||||| +-+-++.+.++++.++||||=|++ +-.-++-++
T Consensus 668 ~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRF-----GVk~KEkLK 737 (1139)
T COG1197 668 AGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRF-----GVKHKEKLK 737 (1139)
T ss_pred cCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhc-----CccHHHHHH
Confidence 456899988877777666665443 358999999 566667888999999999999995 555556666
Q ss_pred hccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccc
Q psy7789 85 FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQ 164 (197)
Q Consensus 85 ~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~ 164 (197)
.+..+.-++-+|||-=|....+.-.-+++...|..++... -.+..++..-+..--...+.+-+.. ++|+..-.|.++
T Consensus 738 ~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--~pV~T~V~~~d~~~ireAI~REl~R-gGQvfYv~NrV~ 814 (1139)
T COG1197 738 ELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--LPVKTFVSEYDDLLIREAILRELLR-GGQVFYVHNRVE 814 (1139)
T ss_pred HHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC--cceEEEEecCChHHHHHHHHHHHhc-CCEEEEEecchh
Confidence 7778889999999987888888888888877776665543 2344443322333333444444333 468888889999
Q ss_pred cHHHHHHHHHhC--CCCeEeecCCCChhhhhhhhC
Q psy7789 165 DVDAIHEYLLLK--GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 165 ~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+.+.+++.|+.. ..++.+.||.|+..+=++||+
T Consensus 815 ~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 815 SIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred hHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 999999999988 678999999999999888863
No 96
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.14 E-value=2.9e-09 Score=87.09 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=113.8
Q ss_pred CCcEEEeCchHHHHHHhc------CCccCCCccEEEeehhhhhhc--CCCHHHHHHHHhhccC-----------------
Q psy7789 34 GCHMMVATPGRLMDMLDK------KMVSLDVCRYLCLDEADRMVD--MGFEEDVRTIFSFFRG----------------- 88 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~------~~~~l~~l~~vViDEad~l~~--~~~~~~i~~i~~~~~~----------------- 88 (197)
++|||||+|-.|...+.. ..--|+.+..+|+|.||.++. |.....+-.-+...|+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 489999999999988874 122389999999999999874 4333333344444442
Q ss_pred ----CceEEEEeecCChhHHHHHHHhcCCC-eEEEe--CCC-----CccCcceeEEEEEcCc-------hhhHHHHHH-H
Q psy7789 89 ----QRQTLLFSATMPKKIQNFARSALVKP-ITINV--GRA-----GAASMNVVQEVEYVKQ-------EAKIVYLLE-C 148 (197)
Q Consensus 89 ----~~q~i~~SAT~~~~~~~~~~~~~~~~-~~i~~--~~~-----~~~~~~i~~~~~~~~~-------~~k~~~l~~-~ 148 (197)
-+|++++|+..++++..+....+.|. ..+.+ ... ......+.|.|...+. +.+++++.. +
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 15999999999999999999877664 22232 222 2345667787776432 334444443 2
Q ss_pred ---hh--cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 149 ---LQ--KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 149 ---l~--~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
+. ...+.+|||++|.-+-..+.++|++.++++..+|...++.+-
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~i 339 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDI 339 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHH
Confidence 22 223689999999999999999999999999999988888773
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.11 E-value=4.9e-09 Score=81.98 Aligned_cols=160 Identities=19% Similarity=0.131 Sum_probs=99.5
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++.+.+++|+++..-+ .+++|+|..+|+..- +..++++|||+|.+.-..-......+-+....+.-
T Consensus 170 ~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 170 NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 5777788887665433 679999998888763 34569999999998533222222233334445677
Q ss_pred EEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCc-ceeEEEEEcCchhhH------HHHHHHhhc---CCCCEEEEec
Q psy7789 92 TLLFSATMPKKIQNFARSALVKPITINVGRAGAASM-NVVQEVEYVKQEAKI------VYLLECLQK---TEPPVLIFAE 161 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~~~~~~~~~~~k~------~~l~~~l~~---~~~~~lIF~~ 161 (197)
+|++|||-+++...-+..- +-..+.++......+ .+..++|.-+...++ ..|...++. .+.|++||++
T Consensus 236 ~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 236 TIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred eEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 8999999887766544333 222333433222222 233334433333222 245555543 3468999999
Q ss_pred ccccHHHHHHHHHhC-C-CCeEeecCCC
Q psy7789 162 KKQDVDAIHEYLLLK-G-KPFFTLKSLK 187 (197)
Q Consensus 162 s~~~~~~l~~~L~~~-~-~~~~~~h~~~ 187 (197)
++...+.+++.|++. + ..+..+|+..
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~d 341 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSED 341 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeeccC
Confidence 999999999999654 3 3557788754
No 98
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.99 E-value=1.1e-08 Score=91.33 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=50.1
Q ss_pred hhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHH-hCCCCeEeecCCCChhhhhhhh
Q psy7789 140 AKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLL-LKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 140 ~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|..+|.++++.. +.|+||||+++..+..+++.|+ ..|+++..+||+|++.+|+++.
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHH
Confidence 4667888888866 4689999999999999999995 6699999999999999999875
No 99
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.99 E-value=2.1e-09 Score=94.33 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=99.4
Q ss_pred CcEEEeCchHHHHHHhc-CCcc---CCCccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeecCChhHHHHHHH
Q psy7789 35 CHMMVATPGRLMDMLDK-KMVS---LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~-~~~~---l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~ 109 (197)
..+.++||......... .... .=-...+|+||+|.+.+......+..++..+. -...++++|||+|+...+....
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~ 390 (733)
T COG1203 311 LALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKK 390 (733)
T ss_pred ccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHH
Confidence 45666666665552211 1111 11235889999999987633333333333332 3778999999999999998888
Q ss_pred hcCCCeEEEeCCCCc---cCcceeEEEEEcCchhhH-HHHHHHhh---cCCCCEEEEecccccHHHHHHHHHhCCCCeEe
Q psy7789 110 ALVKPITINVGRAGA---ASMNVVQEVEYVKQEAKI-VYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFT 182 (197)
Q Consensus 110 ~~~~~~~i~~~~~~~---~~~~i~~~~~~~~~~~k~-~~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~ 182 (197)
.+.+...+....... .-..+.+.. .....+.. ........ ..+++++|-|||+..|.++++.|+..+.++..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 391 ALGKGREVVENAKFCPKEDEPGLKRKE-RVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred HHhcccceecccccccccccccccccc-chhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 877655544432100 001111110 01111110 01111111 23468999999999999999999999888999
Q ss_pred ecCCCChhhhhhhh
Q psy7789 183 LKSLKEDQNNQTLE 196 (197)
Q Consensus 183 ~h~~~~~~~R~~i~ 196 (197)
+||.+...+|.+.+
T Consensus 470 lHSRf~~~dR~~ke 483 (733)
T COG1203 470 LHSRFTLKDREEKE 483 (733)
T ss_pred EecccchhhHHHHH
Confidence 99999999999876
No 100
>KOG0354|consensus
Probab=98.97 E-value=5.9e-09 Score=89.26 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=66.4
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCcc-CCCccEEEeehhhhhhcCC-CHHHHHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVS-LDVCRYLCLDEADRMVDMG-FEEDVRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~-l~~l~~vViDEad~l~~~~-~~~~i~~i~~~~~~~ 89 (197)
+-++....||.........+-..++|+|+||..|...+...... ++++.++||||||+-.... |-..++..+..-...
T Consensus 132 ~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 132 PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 44666677774444444455556999999999999988765444 6999999999999988765 444555665555556
Q ss_pred ceEEEEeecCChh
Q psy7789 90 RQTLLFSATMPKK 102 (197)
Q Consensus 90 ~q~i~~SAT~~~~ 102 (197)
.|++++|||....
T Consensus 212 ~qILgLTASpG~~ 224 (746)
T KOG0354|consen 212 NQILGLTASPGSK 224 (746)
T ss_pred ccEEEEecCCCcc
Confidence 6999999997644
No 101
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=1.7e-09 Score=93.46 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=90.1
Q ss_pred CCcEEEeCchHHHHHHhcC--------CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHH-
Q psy7789 34 GCHMMVATPGRLMDMLDKK--------MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQ- 104 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~--------~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~- 104 (197)
..+|+|+|...+.....+. .+.-....++|+||||++.. .....++..+ .....+++|||...+-.
T Consensus 343 ~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l-~a~~RLGLTATP~ReD~~ 417 (732)
T TIGR00603 343 EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIV-QAHCKLGLTATLVREDDK 417 (732)
T ss_pred CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhc-CcCcEEEEeecCcccCCc
Confidence 3789999998775432211 12234678999999999854 3344555555 34567999999752211
Q ss_pred -HHHHHhcCCCeEEEeCCC------CccCcceeEEEE---------------------EcCchhhHHHHHHHhhcC---C
Q psy7789 105 -NFARSALVKPITINVGRA------GAASMNVVQEVE---------------------YVKQEAKIVYLLECLQKT---E 153 (197)
Q Consensus 105 -~~~~~~~~~~~~i~~~~~------~~~~~~i~~~~~---------------------~~~~~~k~~~l~~~l~~~---~ 153 (197)
.....++. |......-. ...+......+. ......|+..+..+++.+ +
T Consensus 418 ~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g 496 (732)
T TIGR00603 418 ITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRG 496 (732)
T ss_pred hhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcC
Confidence 11222222 222222110 011100101111 112334666666666543 4
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.++||||++...++.++..| + +..+||++++.+|+++.+
T Consensus 497 ~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~ 535 (732)
T TIGR00603 497 DKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQ 535 (732)
T ss_pred CeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHH
Confidence 58999999999999888877 3 467999999999999863
No 102
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.96 E-value=6.9e-09 Score=90.79 Aligned_cols=174 Identities=17% Similarity=0.226 Sum_probs=110.7
Q ss_pred ccccCC-CCeeEEEEEcCCChHH---hHHHHh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC-----
Q psy7789 5 FISALP-IPLRTCLAIGGVPMNQ---SLDVIK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG----- 74 (197)
Q Consensus 5 ~~~~~~-~~i~~~~~~gg~~~~~---~~~~l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~----- 74 (197)
|.+..+ ..+++. .+|..+..+ -.+.+. +..||+|+|..-|...+.. +.-.+.+++.+|++|.++..+
T Consensus 148 ~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 148 FAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHH
Confidence 444444 334444 555544333 335554 4699999998776665542 111367799999999998532
Q ss_pred ------CHHH-------HHHHHhhc------------------------cCCceEEEEeecCChhHHHHHHHhcCCCeEE
Q psy7789 75 ------FEED-------VRTIFSFF------------------------RGQRQTLLFSATMPKKIQNFARSALVKPITI 117 (197)
Q Consensus 75 ------~~~~-------i~~i~~~~------------------------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i 117 (197)
|-+. +..+...+ .+..++++.|||..+.-. -...++.-.-+
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~--R~~LfReLlgF 302 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGS--RLKLFRELLGF 302 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCc--hHHHHHHHhCC
Confidence 2111 11111111 134689999999875532 11233333345
Q ss_pred EeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecc---cccHHHHHHHHHhCCCCeEeecCC
Q psy7789 118 NVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEK---KQDVDAIHEYLLLKGKPFFTLKSL 186 (197)
Q Consensus 118 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s---~~~~~~l~~~L~~~~~~~~~~h~~ 186 (197)
.++.......++...+... +-...+.++++..+.-+|||++. ++.++++++.|+++|+++..+|++
T Consensus 303 evG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 303 EVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred ccCccchhhhheeeeeccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 5555556667777766555 44555666667776679999999 999999999999999999999985
No 103
>KOG0922|consensus
Probab=98.93 E-value=5.9e-08 Score=81.67 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=102.4
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh-hcCC-CHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcC
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM-VDMG-FEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l-~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 112 (197)
..|.+.|.|.|++-+.... .++..+.+|+||||.= +..+ ..-.++.+++. +++.++|++|||++ .+....|+.
T Consensus 141 TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIimSATld---a~kfS~yF~ 215 (674)
T KOG0922|consen 141 TRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIMSATLD---AEKFSEYFN 215 (674)
T ss_pred eeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEEeeeec---HHHHHHHhc
Confidence 5799999999998776554 3689999999999952 2211 22233343333 34679999999998 556667887
Q ss_pred CCeEEEeCCCCccCcceeEEEEEcCchhhHHH----HHHHhh-cCCCCEEEEecccccHHHHHHHHHhC----CC----C
Q psy7789 113 KPITINVGRAGAASMNVVQEVEYVKQEAKIVY----LLECLQ-KTEPPVLIFAEKKQDVDAIHEYLLLK----GK----P 179 (197)
Q Consensus 113 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~----l~~~l~-~~~~~~lIF~~s~~~~~~l~~~L~~~----~~----~ 179 (197)
+...+.+....- .+...|..-+..+-++. ++++-. +.++-+|||-...++.+.+++.|.+. +. -
T Consensus 216 ~a~i~~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~ 292 (674)
T KOG0922|consen 216 NAPILTIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPEL 292 (674)
T ss_pred CCceEeecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcce
Confidence 766666653332 24444444344333322 222222 23457999999999999999999775 22 2
Q ss_pred eEeecCCCChhhhhhh
Q psy7789 180 FFTLKSLKEDQNNQTL 195 (197)
Q Consensus 180 ~~~~h~~~~~~~R~~i 195 (197)
+.++||.|+.++..+|
T Consensus 293 ~lply~aL~~e~Q~rv 308 (674)
T KOG0922|consen 293 ILPLYGALPSEEQSRV 308 (674)
T ss_pred eeeecccCCHHHhhcc
Confidence 5789999999998876
No 104
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.88 E-value=2.3e-08 Score=69.09 Aligned_cols=88 Identities=34% Similarity=0.482 Sum_probs=66.5
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++.+..+.++.....+......+++|+++|++.+..............+++|+||+|.+....................+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 136 (144)
T cd00046 57 GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQ 136 (144)
T ss_pred CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccce
Confidence 57778888877666555555667999999999999888766555678999999999999876544432233444567889
Q ss_pred EEEEeecC
Q psy7789 92 TLLFSATM 99 (197)
Q Consensus 92 ~i~~SAT~ 99 (197)
++++|||.
T Consensus 137 ~i~~saTp 144 (144)
T cd00046 137 VLLLSATP 144 (144)
T ss_pred EEEEeccC
Confidence 99999994
No 105
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.83 E-value=1.4e-08 Score=84.41 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=93.3
Q ss_pred cEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhH---HHHHHHhcC
Q psy7789 36 HMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKI---QNFARSALV 112 (197)
Q Consensus 36 ~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~---~~~~~~~~~ 112 (197)
.|.|+|-..+...-....+..++..++|+||||++....+...... +.....++++|||.+..- .......+.
T Consensus 124 ~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~----~~~~~~~LGLTATp~R~D~~~~~~l~~~~g 199 (442)
T COG1061 124 KVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILEL----LSAAYPRLGLTATPEREDGGRIGDLFDLIG 199 (442)
T ss_pred cEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHh----hhcccceeeeccCceeecCCchhHHHHhcC
Confidence 6999998887775211233345788999999999977655543333 322222899999964211 111111111
Q ss_pred CCeEEEeCCCC------ccCcceeEEEE------------------------------------EcCchhhHHHHHHHhh
Q psy7789 113 KPITINVGRAG------AASMNVVQEVE------------------------------------YVKQEAKIVYLLECLQ 150 (197)
Q Consensus 113 ~~~~i~~~~~~------~~~~~i~~~~~------------------------------------~~~~~~k~~~l~~~l~ 150 (197)
+......... ..+........ ....+.+...+..++.
T Consensus 200 -~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (442)
T COG1061 200 -PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLL 278 (442)
T ss_pred -CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHH
Confidence 2222222110 01100000000 0011233444444454
Q ss_pred cC--CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 151 KT--EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 151 ~~--~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.+ ..+++|||.+...+..++..+...|. +..+.|+.++++|+++.+
T Consensus 279 ~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 279 KHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred HhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 43 45899999999999999999999888 999999999999998863
No 106
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=6.3e-08 Score=85.18 Aligned_cols=60 Identities=18% Similarity=0.419 Sum_probs=51.6
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHH-HHHHhcCCccCC-------CccEEEeehhhhhhc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRL-MDMLDKKMVSLD-------VCRYLCLDEADRMVD 72 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l-~~~l~~~~~~l~-------~l~~vViDEad~l~~ 72 (197)
.|+++..++||.+...+.+.+ +|||+||||++| +++++.+.+.++ .++++|+||||.++-
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 479999999999998887665 499999999999 999988766655 558999999999873
No 107
>KOG0920|consensus
Probab=98.61 E-value=9.6e-07 Score=77.91 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=103.2
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh-hcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcCC
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM-VDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK 113 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l-~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~ 113 (197)
..++.||-|.|+..+.. .-.+..+..+|+||+|.= .+.+|.-.+...+-..+++.++|+||||+. .+....|+..
T Consensus 265 t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d---ae~fs~YF~~ 340 (924)
T KOG0920|consen 265 TRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD---AELFSDYFGG 340 (924)
T ss_pred eeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecc---hHHHHHHhCC
Confidence 67999999999999986 445799999999999964 344455554444444457999999999998 5555677766
Q ss_pred CeEEEeCCCCc----------------cCcceeEEE-----------EEc-CchhhHHHHHHHhh---c--CCCCEEEEe
Q psy7789 114 PITINVGRAGA----------------ASMNVVQEV-----------EYV-KQEAKIVYLLECLQ---K--TEPPVLIFA 160 (197)
Q Consensus 114 ~~~i~~~~~~~----------------~~~~i~~~~-----------~~~-~~~~k~~~l~~~l~---~--~~~~~lIF~ 160 (197)
...+++....- ......+.. ..+ ..+.....+.+++. . ..+.+|||-
T Consensus 341 ~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFL 420 (924)
T KOG0920|consen 341 CPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFL 420 (924)
T ss_pred CceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEc
Confidence 66666643110 000000000 000 01112222333332 2 246799999
Q ss_pred cccccHHHHHHHHHhC-------CCCeEeecCCCChhhhhhh
Q psy7789 161 EKKQDVDAIHEYLLLK-------GKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 161 ~s~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~R~~i 195 (197)
+.......+++.|... .+-+.++|+.|+..+.+.|
T Consensus 421 PG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V 462 (924)
T KOG0920|consen 421 PGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV 462 (924)
T ss_pred CCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh
Confidence 9999999999999643 2568899999999887765
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.52 E-value=1.6e-06 Score=75.17 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=49.0
Q ss_pred hhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 139 EAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 139 ~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
..++..+.+.++. .+.+++|||+|++.++.+++.|.+.|+++..+||++++.+|.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l 485 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEII 485 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHH
Confidence 3455566666653 345899999999999999999999999999999999999998875
No 109
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.46 E-value=3.2e-06 Score=70.04 Aligned_cols=101 Identities=18% Similarity=0.106 Sum_probs=67.8
Q ss_pred CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEeccccc
Q psy7789 89 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQD 165 (197)
Q Consensus 89 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~ 165 (197)
..|++++|||-.+.-.+ ....+-+.-.+.+....-+.+. .-+.....+.|++-++. .+.++||=+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e---~s~~~vveQiIRPTGLlDP~ie----vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELE---QSGGNVVEQIIRPTGLLDPEIE----VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHH---hccCceeEEeecCCCCCCCcee----eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 45999999996543222 2222222222233332222221 12334456666666553 34689999999999
Q ss_pred HHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 166 VDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|+.|+++|.+.|+++..+|++...-+|-+|+
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIi 489 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEII 489 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHH
Confidence 9999999999999999999999999998875
No 110
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.38 E-value=5.2e-06 Score=74.91 Aligned_cols=57 Identities=21% Similarity=0.422 Sum_probs=48.0
Q ss_pred hhHHHHHHHhh---cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 140 AKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 140 ~k~~~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|+..|..++. ..+.++|||+.-......|.+.|...|++...++|+++.++|.+++
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~I 530 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASI 530 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHH
Confidence 45555555554 3456999999999999999999999999999999999999998875
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.37 E-value=2.3e-06 Score=74.47 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=48.2
Q ss_pred hhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 140 AKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 140 ~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.++..+.+.++. .+.+++|||+|++.++.+++.|.+.|+++..+||++++.+|.+++
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l 489 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEII 489 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHH
Confidence 445556665553 346899999999999999999999999999999999999998875
No 112
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=4.9e-06 Score=72.86 Aligned_cols=104 Identities=12% Similarity=0.153 Sum_probs=76.5
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~ 167 (197)
++.+||.|...+..++.+.|.-+ .+.++........-..-.++....+|...+.+.+.. .+.|+||||+|+..++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se 454 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSE 454 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 56778899877766676666444 444443332211112234566778899899888854 3468999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.++..|.+.|++...+||++.+.+++.|.
T Consensus 455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~ 483 (796)
T PRK12906 455 RLSHLLDEAGIPHAVLNAKNHAKEAEIIM 483 (796)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHHHH
Confidence 99999999999999999999988887663
No 113
>KOG0923|consensus
Probab=98.28 E-value=3.4e-05 Score=65.59 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=102.6
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhh-hhcCC-CHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcC
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR-MVDMG-FEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~-l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 112 (197)
.-|-++|.|.|+.-+... .+|...+.+||||||. -+..+ ....+..| .+++++..+++.|||++ .+....|+.
T Consensus 356 TvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDI-ar~RpdLKllIsSAT~D---AekFS~fFD 430 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFRPDLKLLISSATMD---AEKFSAFFD 430 (902)
T ss_pred eeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhCCcceEEeeccccC---HHHHHHhcc
Confidence 346689999998776533 3578999999999995 23322 23334444 34457889999999998 445667777
Q ss_pred CCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHH-HhhcC----CCCEEEEecccccHHHHHHHHHh----CC-----C
Q psy7789 113 KPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLE-CLQKT----EPPVLIFAEKKQDVDAIHEYLLL----KG-----K 178 (197)
Q Consensus 113 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-~l~~~----~~~~lIF~~s~~~~~~l~~~L~~----~~-----~ 178 (197)
+.-++.++... -.+..+|-..++.+-++.-+. +++-+ .+-+|||..-.+..+...+.|.+ .| +
T Consensus 431 dapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~el 507 (902)
T KOG0923|consen 431 DAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIREL 507 (902)
T ss_pred CCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceE
Confidence 76666665333 335566666677665544333 33322 34699999887777666666643 33 3
Q ss_pred CeEeecCCCChhhhhhhh
Q psy7789 179 PFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 179 ~~~~~h~~~~~~~R~~i~ 196 (197)
=+.++|+.||.+.+.+|-
T Consensus 508 iv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 508 IVLPIYANLPSELQAKIF 525 (902)
T ss_pred EEeeccccCChHHHHhhc
Confidence 477999999999887764
No 114
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.20 E-value=2.9e-05 Score=71.11 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=47.6
Q ss_pred CCcEEEeCchHHHHHHhc-----CCccCCCccEEEeehhhhhhc------C---------CCHHHHHHHHhhccCCceEE
Q psy7789 34 GCHMMVATPGRLMDMLDK-----KMVSLDVCRYLCLDEADRMVD------M---------GFEEDVRTIFSFFRGQRQTL 93 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~-----~~~~l~~l~~vViDEad~l~~------~---------~~~~~i~~i~~~~~~~~q~i 93 (197)
..+|+|+|..++...+.. ....+.+.++||+||||+... . .+...++.++.++ +.-.+
T Consensus 511 ~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF--dA~~I 588 (1123)
T PRK11448 511 ETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF--DAVKI 588 (1123)
T ss_pred CCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc--CccEE
Confidence 478999999998876532 124578899999999999631 0 1245677888876 35679
Q ss_pred EEeecCC
Q psy7789 94 LFSATMP 100 (197)
Q Consensus 94 ~~SAT~~ 100 (197)
+||||-.
T Consensus 589 GLTATP~ 595 (1123)
T PRK11448 589 GLTATPA 595 (1123)
T ss_pred EEecCCc
Confidence 9999964
No 115
>KOG0385|consensus
Probab=98.19 E-value=3.3e-05 Score=66.64 Aligned_cols=55 Identities=22% Similarity=0.392 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
++.|+.-|+..+.+||||..=...-.-|-++..-+||....+-|.++.++|..-+
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI 530 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAI 530 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHH
Confidence 4555556667778999999877777777777778899999999999999998643
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.18 E-value=1.1e-05 Score=55.30 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=51.5
Q ss_pred chhhHHHHHHHhhcC---CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 138 QEAKIVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+.|...+.+++... ++++||||++...++.+++.|.+.+..+..+||++++.+|..+.
T Consensus 10 ~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (131)
T cd00079 10 EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVL 71 (131)
T ss_pred CHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHH
Confidence 347888888888755 46899999999999999999999899999999999999998764
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.05 E-value=4.7e-05 Score=66.26 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=87.0
Q ss_pred CcEEEeCchHHHHHHhcC-----CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHH
Q psy7789 35 CHMMVATPGRLMDMLDKK-----MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~-----~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 109 (197)
++|.++|-..+...+... .+.....+++||||||+- .....+.|+.++....|.+ +||.......-.-.
T Consensus 257 ~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFdA~~~gL--TATP~~~~d~~T~~ 330 (875)
T COG4096 257 SEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFDAATQGL--TATPKETIDRSTYG 330 (875)
T ss_pred eeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHHHHHHhh--ccCccccccccccc
Confidence 689999999998887654 566788999999999994 5555567777774333333 77765422222222
Q ss_pred hc-CC------------------C--eEEEe--CCCCccCcc-----------e--eEEEEEcCc-----------hhhH
Q psy7789 110 AL-VK------------------P--ITINV--GRAGAASMN-----------V--VQEVEYVKQ-----------EAKI 142 (197)
Q Consensus 110 ~~-~~------------------~--~~i~~--~~~~~~~~~-----------i--~~~~~~~~~-----------~~k~ 142 (197)
++ .. + +.+.+ ......+.. + ..+.+...+ +.-.
T Consensus 331 ~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~ 410 (875)
T COG4096 331 FFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVA 410 (875)
T ss_pred ccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHH
Confidence 22 22 2 22222 111111110 1 001110000 1112
Q ss_pred HHHHHHhhc--C---CCCEEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhh
Q psy7789 143 VYLLECLQK--T---EPPVLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 143 ~~l~~~l~~--~---~~~~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R 192 (197)
..+.+.+.. . .+|+||||.+..+|+.+.+.|.+. |--|..+.|+-.+.++
T Consensus 411 r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~ 470 (875)
T COG4096 411 RELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA 470 (875)
T ss_pred HHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH
Confidence 344444544 2 258999999999999999999765 2336667777665554
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.03 E-value=4e-05 Score=68.29 Aligned_cols=101 Identities=10% Similarity=0.119 Sum_probs=73.7
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC---CCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~ 167 (197)
++-+||.|...+..++...|--+ ++.++........-..-.++....+|...+.+.+... +.|+||||+|++.++
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~--Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE 612 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLD--VVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSE 612 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCc--EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHH
Confidence 45678888887777887777544 3444433322221222355678888999999988643 568999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.++..|...|++...+|+ .+.+|++.
T Consensus 613 ~Ls~~L~~~gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 613 TLSRMLRAKRIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred HHHHHHHHcCCCceeecC--CHHHhHHH
Confidence 999999999999999997 45566653
No 119
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.99 E-value=0.00017 Score=63.75 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=44.5
Q ss_pred EEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCC
Q psy7789 133 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSL 186 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 186 (197)
.++....+|...+.+-+.+ .+.|+||-|.|++.++.++..|.+.|++..++++.
T Consensus 416 ~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk 472 (939)
T PRK12902 416 QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAK 472 (939)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCC
Confidence 3445667788888776653 35689999999999999999999999998888886
No 120
>KOG0925|consensus
Probab=97.97 E-value=0.00015 Score=59.94 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=87.7
Q ss_pred EeCchHHHHHHhcC--------CccCCCccEEEeehhhhh-hcC-CCHHHHHHHHhhccCCceEEEEeecCChhHHHHHH
Q psy7789 39 VATPGRLMDMLDKK--------MVSLDVCRYLCLDEADRM-VDM-GFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFAR 108 (197)
Q Consensus 39 i~TP~~l~~~l~~~--------~~~l~~l~~vViDEad~l-~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 108 (197)
.+||..++.++..+ .-.++..+.+|+||||.= +.. -..-.++.++..- ++.+++++|||+. ....+
T Consensus 132 C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~---a~Kfq 207 (699)
T KOG0925|consen 132 CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLD---AEKFQ 207 (699)
T ss_pred cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccc---hHHHH
Confidence 45677777655432 122788999999999952 221 1333455555554 4889999999987 45566
Q ss_pred HhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHH----hh-cCCCCEEEEecccccHHHHHHHHHhC----C--
Q psy7789 109 SALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLEC----LQ-KTEPPVLIFAEKKQDVDAIHEYLLLK----G-- 177 (197)
Q Consensus 109 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~----l~-~~~~~~lIF~~s~~~~~~l~~~L~~~----~-- 177 (197)
.|+.++-.+.++..+ + +..+|....+.+.+..-+.. -. +.++-+++|....++.+...+.+... |
T Consensus 208 ~yf~n~Pll~vpg~~--P--vEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~ 283 (699)
T KOG0925|consen 208 RYFGNAPLLAVPGTH--P--VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQ 283 (699)
T ss_pred HHhCCCCeeecCCCC--c--eEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccc
Confidence 888888888887622 2 33355545555544433333 22 23568999999987777777766532 2
Q ss_pred ---CCeEeec
Q psy7789 178 ---KPFFTLK 184 (197)
Q Consensus 178 ---~~~~~~h 184 (197)
.+|.++|
T Consensus 284 ~g~l~v~PLy 293 (699)
T KOG0925|consen 284 VGPLKVVPLY 293 (699)
T ss_pred cCCceEEecC
Confidence 4677777
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.93 E-value=0.0002 Score=63.54 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=47.4
Q ss_pred EEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 133 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.++....+|...+.+-+.. .+.|+||-+.|++.++.++..|++.|++..++++.-...|
T Consensus 426 ~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~E 487 (913)
T PRK13103 426 LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKE 487 (913)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhH
Confidence 4566777888888877764 3568999999999999999999999998877777654443
No 122
>KOG0924|consensus
Probab=97.90 E-value=0.00046 Score=59.25 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=88.2
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh-hcCC-CHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcC
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM-VDMG-FEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l-~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 112 (197)
..|-..|.|.|+.-.-.. -.|.+...+|+||||.= ++.+ ..-.++.++.. +.+..+|+.|||+. .+. ...|+.
T Consensus 446 T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~--a~k-f~nfFg 520 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMD--AQK-FSNFFG 520 (1042)
T ss_pred eeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeecccc--HHH-HHHHhC
Confidence 457788998888644322 23678899999999953 3322 12222333222 35889999999997 333 445555
Q ss_pred CCeEEEeCCCCccCcceeEEEEEcCchhhH-HHHHHHhhc----CCCCEEEEecccccHHHHHHHHHh----C------C
Q psy7789 113 KPITINVGRAGAASMNVVQEVEYVKQEAKI-VYLLECLQK----TEPPVLIFAEKKQDVDAIHEYLLL----K------G 177 (197)
Q Consensus 113 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~~l~~----~~~~~lIF~~s~~~~~~l~~~L~~----~------~ 177 (197)
+.-.+.++...- .+...+...+-++-+ ..+-..+.- ..+-.|||..-.+..+-....++. . +
T Consensus 521 n~p~f~IpGRTy---PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~ 597 (1042)
T KOG0924|consen 521 NCPQFTIPGRTY---PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTD 597 (1042)
T ss_pred CCceeeecCCcc---ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCc
Confidence 433333332221 122222223323222 222233321 135699999887766665555432 2 5
Q ss_pred CCeEeecCCCChhhhhhh
Q psy7789 178 KPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 178 ~~~~~~h~~~~~~~R~~i 195 (197)
..+.++++.|+++-+.+|
T Consensus 598 L~vlpiYSQLp~dlQ~ki 615 (1042)
T KOG0924|consen 598 LAVLPIYSQLPADLQAKI 615 (1042)
T ss_pred eEEEeehhhCchhhhhhh
Confidence 789999999999877665
No 123
>KOG4150|consensus
Probab=97.87 E-value=0.00016 Score=60.85 Aligned_cols=175 Identities=5% Similarity=-0.063 Sum_probs=110.3
Q ss_pred EcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC----CccCCCccEEEeehhhhhhcCCCHHHHH----HHHhhc----
Q psy7789 19 IGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK----MVSLDVCRYLCLDEADRMVDMGFEEDVR----TIFSFF---- 86 (197)
Q Consensus 19 ~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~----~~~l~~l~~vViDEad~l~~~~~~~~i~----~i~~~~---- 86 (197)
+.|.+-.........+..++.+.|..+....--+ ...+-++.++++||+|.+... +....+ .+.+.+
T Consensus 369 ~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~ 447 (1034)
T KOG4150|consen 369 SDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFE 447 (1034)
T ss_pred ccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHH
Confidence 3444455555566778999999998888765322 222566789999999988654 444333 333332
Q ss_pred -cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEE-EEcC-----c---hhhHHHHHHHh---hcCC
Q psy7789 87 -RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEV-EYVK-----Q---EAKIVYLLECL---QKTE 153 (197)
Q Consensus 87 -~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~~-----~---~~k~~~l~~~l---~~~~ 153 (197)
..+.|++-.|||+...++-....+.-+-..+...+... ..-++.+ |.-+ + +.+....-+++ -.++
T Consensus 448 ~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP--s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 448 ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP--SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC--CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 34779999999998888887777766554433332222 2223322 2211 1 22222222222 2345
Q ss_pred CCEEEEecccccHHHHHHHHHhC----CC----CeEeecCCCChhhhhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK----GK----PFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~----~~----~~~~~h~~~~~~~R~~i~ 196 (197)
-++|.||++++-|+-+....++. |- .+..+.||-+.++|.+|+
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE 576 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIE 576 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHH
Confidence 69999999999999877665442 31 466788999999999986
No 124
>KOG2340|consensus
Probab=97.87 E-value=1.8e-05 Score=65.61 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=100.2
Q ss_pred CCcEEEeCchHHHHHHhcC-----Ccc-CCCccEEEeehhhhhhcCCCHHHHHHHHhhc---cCC---------------
Q psy7789 34 GCHMMVATPGRLMDMLDKK-----MVS-LDVCRYLCLDEADRMVDMGFEEDVRTIFSFF---RGQ--------------- 89 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~-----~~~-l~~l~~vViDEad~l~~~~~~~~i~~i~~~~---~~~--------------- 89 (197)
..|||||+|-.|.-++.+. .++ ++.+.++|||.||.++..+ -+++..|+..+ |..
T Consensus 385 ~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL~ 463 (698)
T KOG2340|consen 385 KSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDFSRVRMWYLD 463 (698)
T ss_pred ccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCChhheehheec
Confidence 4899999999998888632 222 7889999999999997532 23444444443 322
Q ss_pred ------ceEEEEeecCChhHHHHHHHhcCCCeE-EEeCC------CCccCcceeEEEEE--cC-----chhhHHHHHHHh
Q psy7789 90 ------RQTLLFSATMPKKIQNFARSALVKPIT-INVGR------AGAASMNVVQEVEY--VK-----QEAKIVYLLECL 149 (197)
Q Consensus 90 ------~q~i~~SAT~~~~~~~~~~~~~~~~~~-i~~~~------~~~~~~~i~~~~~~--~~-----~~~k~~~l~~~l 149 (197)
+|+++||+-..+....+...++.|... +.... -....-.+.|.|.. +. ...++.++.+-+
T Consensus 464 ~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~I 543 (698)
T KOG2340|consen 464 GQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKI 543 (698)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhh
Confidence 388999998888888888888876532 21111 11111223333322 21 245666666554
Q ss_pred h-cCC----CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 150 Q-KTE----PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 150 ~-~~~----~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
. +.. ..+|||.++..+-..+.+++++.+++...+|.-.++
T Consensus 544 mPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk 588 (698)
T KOG2340|consen 544 MPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSK 588 (698)
T ss_pred chhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhH
Confidence 3 332 357999999999999999999988776666644433
No 125
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.75 E-value=0.001 Score=58.34 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=39.3
Q ss_pred CcEEEeCchHHHHHHhcC--CccCCCcc-EEEeehhhhhhcCCCHHHHHHHH-hhccCCceEEEEeecCC
Q psy7789 35 CHMMVATPGRLMDMLDKK--MVSLDVCR-YLCLDEADRMVDMGFEEDVRTIF-SFFRGQRQTLLFSATMP 100 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~--~~~l~~l~-~vViDEad~l~~~~~~~~i~~i~-~~~~~~~q~i~~SAT~~ 100 (197)
.+|+|+|..++...+... .+...+-+ +||+||||+.... .+...+ +.+ ++..+++||||--
T Consensus 339 ~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~~~l~~~~-p~a~~lGfTaTP~ 403 (667)
T TIGR00348 339 GGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELAKNLKKAL-KNASFFGFTGTPI 403 (667)
T ss_pred CCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHHHHHHhhC-CCCcEEEEeCCCc
Confidence 689999999998754321 11111122 8999999997432 233333 445 4678999999963
No 126
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.54 E-value=0.00028 Score=51.15 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=45.0
Q ss_pred hcCCcEEEeCchHHHHHHhcC-----------CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 32 KKGCHMMVATPGRLMDMLDKK-----------MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~~-----------~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
....++++.|..++....... .......+++|+||||++.... .++.++. .+...++.+|||..
T Consensus 109 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 109 NNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp BSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred cccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 346899999999999886531 1234577899999999985432 1455555 46778999999964
No 127
>KOG0951|consensus
Probab=97.51 E-value=0.0011 Score=60.47 Aligned_cols=151 Identities=12% Similarity=0.231 Sum_probs=93.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHH------HHHHHHh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEE------DVRTIFS 84 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~------~i~~i~~ 84 (197)
.|+++..++|..+..-.. ....+|+|+||++.-.+ . +...++++|.||+|.+.+. ++. .++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~lkl---~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLKL---LQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchHH---hhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHH
Confidence 589999999987765432 22378999999998766 2 5678899999999999753 221 1666667
Q ss_pred hccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCC-ccCcceeEEEEEcC-chhhHHHHH----HHhh---cCCCC
Q psy7789 85 FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAG-AASMNVVQEVEYVK-QEAKIVYLL----ECLQ---KTEPP 155 (197)
Q Consensus 85 ~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~-~~~k~~~l~----~~l~---~~~~~ 155 (197)
.+-+..+++++|..+.. .+.. ..+.....+...+.. ..|-.+.-+.+... .+.....+. ..+. ..+++
T Consensus 1285 q~~k~ir~v~ls~~lan-a~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN-ARDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHHhheeEEEeehhhcc-chhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 77778899999988763 2333 222333333333332 22222222222222 222222211 1222 23568
Q ss_pred EEEEecccccHHHHHHHH
Q psy7789 156 VLIFAEKKQDVDAIHEYL 173 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L 173 (197)
++||+++++.|..++.-|
T Consensus 1362 ~~vf~p~rk~~~~~a~~~ 1379 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDL 1379 (1674)
T ss_pred eEEEeccchhhhhhhhcc
Confidence 999999999999988755
No 128
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.50 E-value=0.0042 Score=54.72 Aligned_cols=153 Identities=13% Similarity=0.188 Sum_probs=95.2
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCH-------HHHHHHHhhccCCceEEEEeecCChhHHHHH
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFE-------EDVRTIFSFFRGQRQTLLFSATMPKKIQNFA 107 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~-------~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 107 (197)
.+-++++.++|..... -.+++.+.||+||+...+..-|. +.+..+...+.+...+|++-|+++...-++.
T Consensus 122 ~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred cCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHH
Confidence 5778888888866642 24677899999999988753222 2222334445667899999999999999999
Q ss_pred HHhcCCC-eEEEeCCCCccCcceeEEEEEcC------------------------------------chhhHHHHHHHhh
Q psy7789 108 RSALVKP-ITINVGRAGAASMNVVQEVEYVK------------------------------------QEAKIVYLLECLQ 150 (197)
Q Consensus 108 ~~~~~~~-~~i~~~~~~~~~~~i~~~~~~~~------------------------------------~~~k~~~l~~~l~ 150 (197)
+.+..+. +.+.+. +...+.-.......++ ..+....+-.++.
T Consensus 199 ~~~Rp~~~i~vI~n-~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 199 ASCRPDENIHVIVN-TYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHhCCCCcEEEEEe-eeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 8876543 333332 2211111100111000 0011122222222
Q ss_pred --cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 151 --KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 151 --~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
..++++-||++|...++.++++.+..+.++..++|+-+..+
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d 320 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED 320 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc
Confidence 23457889999999999999999999999998888765553
No 129
>KOG0926|consensus
Probab=97.49 E-value=0.00041 Score=60.48 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=78.7
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhh-cC----CCHHHHHHHHhhccC------CceEEEEeecCChh
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMV-DM----GFEEDVRTIFSFFRG------QRQTLLFSATMPKK 102 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~-~~----~~~~~i~~i~~~~~~------~~q~i~~SAT~~~~ 102 (197)
...|.++|.|-|+.-+.+ .+.|...+.+|+||||.=. .. |....+-.+.+.+.. ...+|+||||+.
T Consensus 349 ~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR-- 425 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR-- 425 (1172)
T ss_pred CceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE--
Confidence 468999999999988874 4557889999999999632 11 112222222222222 347899999985
Q ss_pred HHHH--HHHhcC-CCeEEEeCCCCccCcceeEEEE-EcCchhh---HHHHHHHhhcCC-CCEEEEecccccHHHHHHHHH
Q psy7789 103 IQNF--ARSALV-KPITINVGRAGAASMNVVQEVE-YVKQEAK---IVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLL 174 (197)
Q Consensus 103 ~~~~--~~~~~~-~~~~i~~~~~~~~~~~i~~~~~-~~~~~~k---~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~ 174 (197)
+.++ .++++. .|-.+.+.... -+ +.-+|- ..+.+.- +...+.+-+..+ +-.|||+....+++.|.+.|+
T Consensus 426 VsDFtenk~LFpi~pPlikVdARQ--fP-VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLR 502 (1172)
T KOG0926|consen 426 VSDFTENKRLFPIPPPLIKVDARQ--FP-VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLR 502 (1172)
T ss_pred ecccccCceecCCCCceeeeeccc--Cc-eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHH
Confidence 2222 233343 23344443221 11 222222 1222222 222333333332 469999999999999999999
Q ss_pred hC
Q psy7789 175 LK 176 (197)
Q Consensus 175 ~~ 176 (197)
+.
T Consensus 503 K~ 504 (1172)
T KOG0926|consen 503 KR 504 (1172)
T ss_pred hh
Confidence 86
No 130
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.47 E-value=0.00021 Score=54.86 Aligned_cols=56 Identities=25% Similarity=0.448 Sum_probs=46.2
Q ss_pred eeEEEEEcC-CChHHhHHHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhh
Q psy7789 13 LRTCLAIGG-VPMNQSLDVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEAD 68 (197)
Q Consensus 13 i~~~~~~gg-~~~~~~~~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad 68 (197)
.+|+-+++. ...++|...+.. ..+|.||||+|+..++..+.+.+++++++|+|--|
T Consensus 154 ~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 154 CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWSY 211 (252)
T ss_pred chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEEEEcCCc
Confidence 444445555 367888888874 68999999999999999999999999999999754
No 131
>KOG0949|consensus
Probab=97.46 E-value=0.00021 Score=63.37 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=51.8
Q ss_pred CCcEEEeCchHHHHHHhc---CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChh
Q psy7789 34 GCHMMVATPGRLMDMLDK---KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKK 102 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~---~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 102 (197)
+|+|+|+-|+++-+++.. ..-+..+++++|+||+|.+....-...+..++-.. .+.++++|||+.+.
T Consensus 605 nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 605 NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGNP 674 (1330)
T ss_pred hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCeeEEecccCCH
Confidence 599999999999999976 44568999999999999997654343444444443 56799999999643
No 132
>KOG1123|consensus
Probab=97.31 E-value=0.0014 Score=54.63 Aligned_cols=154 Identities=14% Similarity=0.179 Sum_probs=80.6
Q ss_pred CCcEEEeCchHHHHHHhcC--------CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHH
Q psy7789 34 GCHMMVATPGRLMDMLDKK--------MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQN 105 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~--------~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 105 (197)
++.|+|+|=..+..--++. .+.-..+.++++||+|.+....|+..+.-+-.. -.+.++||+-.+-..
T Consensus 390 ~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH-----cKLGLTATLvREDdK 464 (776)
T KOG1123|consen 390 GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH-----CKLGLTATLVREDDK 464 (776)
T ss_pred CCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH-----hhccceeEEeecccc
Confidence 5889999964333211111 122466789999999999877677555444222 246788887422111
Q ss_pred HHHH-hcCCC-----eEEEeCCCCc----------------------cCcceeEEEEEcCchhhHH---HHHHHhhcCCC
Q psy7789 106 FARS-ALVKP-----ITINVGRAGA----------------------ASMNVVQEVEYVKQEAKIV---YLLECLQKTEP 154 (197)
Q Consensus 106 ~~~~-~~~~~-----~~i~~~~~~~----------------------~~~~i~~~~~~~~~~~k~~---~l~~~l~~~~~ 154 (197)
+... |+-.| .|.++..... .-..-+....++=++.|+. .|++.-++.+-
T Consensus 465 I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgD 544 (776)
T KOG1123|consen 465 ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGD 544 (776)
T ss_pred ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCC
Confidence 1111 11111 1111111000 0000111222333444543 44444445556
Q ss_pred CEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
++|||..+.-...+.| -+.|- ..++|..++.+|.+|++
T Consensus 545 KiIVFsDnvfALk~YA---ikl~K--pfIYG~Tsq~ERm~ILq 582 (776)
T KOG1123|consen 545 KIIVFSDNVFALKEYA---IKLGK--PFIYGPTSQNERMKILQ 582 (776)
T ss_pred eEEEEeccHHHHHHHH---HHcCC--ceEECCCchhHHHHHHH
Confidence 8999997655444444 34443 37899999999999874
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0012 Score=57.87 Aligned_cols=148 Identities=17% Similarity=0.171 Sum_probs=85.6
Q ss_pred ccccCCCCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc---CC---
Q psy7789 5 FISALPIPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD---MG--- 74 (197)
Q Consensus 5 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~---~~--- 74 (197)
|...+ |.+++.+++|.+..+..+.|. +...|+|||=--++ ..++++.++|+||=|.-.- ++
T Consensus 265 f~~rF--g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 265 FKARF--GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred HHHHh--CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCc
Confidence 44455 478889999988666665553 46999999942222 2378999999999997642 11
Q ss_pred CHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCch-hhH-----HHHHHH
Q psy7789 75 FEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQE-AKI-----VYLLEC 148 (197)
Q Consensus 75 ~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~-----~~l~~~ 148 (197)
...++....... .+.++|+-|||-+-+....+ .-.....+.+..............+.+..+ .+. ..|++.
T Consensus 336 hARdvA~~Ra~~-~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~ 412 (730)
T COG1198 336 HARDVAVLRAKK-ENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEA 412 (730)
T ss_pred CHHHHHHHHHHH-hCCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHH
Confidence 223344333333 58899999999664433333 222233444433332111122223333221 111 456666
Q ss_pred hhc---CCCCEEEEecccc
Q psy7789 149 LQK---TEPPVLIFAEKKQ 164 (197)
Q Consensus 149 l~~---~~~~~lIF~~s~~ 164 (197)
+++ .+.|+|+|.|.+-
T Consensus 413 i~~~l~~geQ~llflnRRG 431 (730)
T COG1198 413 IRKTLERGEQVLLFLNRRG 431 (730)
T ss_pred HHHHHhcCCeEEEEEccCC
Confidence 653 3569999999863
No 134
>KOG0952|consensus
Probab=97.13 E-value=9.2e-05 Score=65.89 Aligned_cols=176 Identities=12% Similarity=0.119 Sum_probs=97.2
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHh--cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc---
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLD--KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF--- 86 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~--~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~--- 86 (197)
|+++.-++|+...+ ...+. .++++|+||++.....+ +..--+.+++.+|+||.|++.+. +++.+..+....
T Consensus 1001 g~k~ie~tgd~~pd--~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCC--hhhee-cCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 78888888876544 22222 38999999999887775 44555789999999999998654 444444332222
Q ss_pred ----cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEE-------EEEcC-chhhHHHHHHHhhcCC-
Q psy7789 87 ----RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQE-------VEYVK-QEAKIVYLLECLQKTE- 153 (197)
Q Consensus 87 ----~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~-------~~~~~-~~~k~~~l~~~l~~~~- 153 (197)
++..|.+.+|.- ......+..+....+. ... ..+..+.-... .++|+ -..+..--...++.++
T Consensus 1077 s~~t~~~vr~~glsta-~~na~dla~wl~~~~~-~nf--~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLSTA-LANANDLADWLNIKDM-YNF--RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred ccccCcchhhhhHhhh-hhccHHHHHHhCCCCc-CCC--CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 223355555332 2334444444433322 101 01111110000 11222 2233344445566654
Q ss_pred -CCEEEEecccccHHHHHHHHHh----------------------------------CCCCeEeecCCCChhhhhhh
Q psy7789 154 -PPVLIFAEKKQDVDAIHEYLLL----------------------------------KGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 154 -~~~lIF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~~h~~~~~~~R~~i 195 (197)
.+++||+.+++.....+.-|-. .++-+..+|+++...+|..+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 4899999887654444433311 13446778889988888754
No 135
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.07 E-value=0.0047 Score=55.17 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=69.9
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC------hhHHHHHH
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP------KKIQNFAR 108 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~------~~~~~~~~ 108 (197)
..|+++||..|..-+-.+.++++.+..+||||||++.+......+..+.+.-.+..=+.+|||.-. ..+.++++
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 579999999998777778899999999999999999888777778888777777778899999865 35666777
Q ss_pred HhcCCCeEEEeCCC
Q psy7789 109 SALVKPITINVGRA 122 (197)
Q Consensus 109 ~~~~~~~~i~~~~~ 122 (197)
.++-..+.+.....
T Consensus 88 ~L~i~~v~l~prf~ 101 (814)
T TIGR00596 88 NLFLRHVYLWPRFH 101 (814)
T ss_pred HhCcCeEEEeCCCc
Confidence 76666555544433
No 136
>KOG0384|consensus
Probab=96.99 E-value=0.011 Score=53.99 Aligned_cols=52 Identities=33% Similarity=0.438 Sum_probs=44.6
Q ss_pred HHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 145 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 145 l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|+.-|+..+.+||||..=++.-.-|+++|..++|+.--+-|.+..+-|++-+
T Consensus 691 LL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AI 742 (1373)
T KOG0384|consen 691 LLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAI 742 (1373)
T ss_pred HHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHH
Confidence 3333445566899999999999999999999999999999999999998754
No 137
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.94 E-value=0.0012 Score=59.66 Aligned_cols=161 Identities=15% Similarity=0.067 Sum_probs=91.2
Q ss_pred CcEEEeCchHHHHHHh--c-CCccCC--C--ccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeecCChhHHHH
Q psy7789 35 CHMMVATPGRLMDMLD--K-KMVSLD--V--CRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSATMPKKIQNF 106 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~--~-~~~~l~--~--l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~ 106 (197)
++++|||++.++.... + +...+. . =+.|||||+|.+-.. ....+..++.... -...++++|||+|+.+...
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 7899999999998762 2 111111 1 247899999998433 2333444444332 2678999999999876653
Q ss_pred HHH-hc----------CC---C--eEEEeCCCCc-----------------------------cCcceeEEEEEcCch--
Q psy7789 107 ARS-AL----------VK---P--ITINVGRAGA-----------------------------ASMNVVQEVEYVKQE-- 139 (197)
Q Consensus 107 ~~~-~~----------~~---~--~~i~~~~~~~-----------------------------~~~~i~~~~~~~~~~-- 139 (197)
... |. .. + +.-...++.. .+....-....++..
T Consensus 642 L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~ 721 (1110)
T TIGR02562 642 LFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPR 721 (1110)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCccc
Confidence 332 21 11 1 1111111110 111112223333322
Q ss_pred ---hhHHHHHHHhh--------cC-------CCC---EEEEecccccHHHHHHHHHhC----C--CCeEeecCCCChhhh
Q psy7789 140 ---AKIVYLLECLQ--------KT-------EPP---VLIFAEKKQDVDAIHEYLLLK----G--KPFFTLKSLKEDQNN 192 (197)
Q Consensus 140 ---~k~~~l~~~l~--------~~-------~~~---~lIF~~s~~~~~~l~~~L~~~----~--~~~~~~h~~~~~~~R 192 (197)
.....+.+.+. .+ +++ .+|=+++++.+..+|..|... + +.+.+|||..+...|
T Consensus 722 ~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~R 801 (1110)
T TIGR02562 722 ENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLR 801 (1110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHH
Confidence 12222222221 11 122 688889999999999988754 3 357789999999999
Q ss_pred hhhh
Q psy7789 193 QTLE 196 (197)
Q Consensus 193 ~~i~ 196 (197)
..+|
T Consensus 802 s~~E 805 (1110)
T TIGR02562 802 SYIE 805 (1110)
T ss_pred HHHH
Confidence 8876
No 138
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.62 E-value=0.02 Score=50.23 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=70.2
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~ 167 (197)
.+..||.|...+..++.+.|.-+ .+.+++.......-..-.++....+|...+.+-+.+ .+.|+||.|.|+..++
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE 441 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESE 441 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 56789999987777777666544 444443322211111224566778888888877754 3568999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.++..|.+.|++...+++.-..+|
T Consensus 442 ~ls~~L~~~gI~h~vLNAk~~~~E 465 (764)
T PRK12326 442 ELAERLRAAGVPAVVLNAKNDAEE 465 (764)
T ss_pred HHHHHHHhCCCcceeeccCchHhH
Confidence 999999999999999998744433
No 139
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.57 E-value=0.003 Score=49.49 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=46.3
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHh---cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLD---KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG 88 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~---~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~ 88 (197)
.+++..+.|+..............+++|+|.+.+...-. ...+.--+.++||+||+|.+-+. ..... ..+..+.
T Consensus 85 ~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~-~s~~~-~~l~~l~- 161 (299)
T PF00176_consen 85 SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK-DSKRY-KALRKLR- 161 (299)
T ss_dssp TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT-TSHHH-HHHHCCC-
T ss_pred cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc-ccccc-ccccccc-
Confidence 456666666551222222222458999999998881110 01122234889999999999433 22222 3333353
Q ss_pred CceEEEEeecC
Q psy7789 89 QRQTLLFSATM 99 (197)
Q Consensus 89 ~~q~i~~SAT~ 99 (197)
....+++|||.
T Consensus 162 ~~~~~lLSgTP 172 (299)
T PF00176_consen 162 ARYRWLLSGTP 172 (299)
T ss_dssp ECEEEEE-SS-
T ss_pred cceEEeecccc
Confidence 66778899994
No 140
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.46 E-value=0.051 Score=47.77 Aligned_cols=93 Identities=8% Similarity=0.004 Sum_probs=59.4
Q ss_pred ccccCCCCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-C--CCH-
Q psy7789 5 FISALPIPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-M--GFE- 76 (197)
Q Consensus 5 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-~--~~~- 76 (197)
|.+.++ +-.++.++++.+..+..+.+. +.++|+|||-.-++ .-+.++.++|+||=|.-.- . +-+
T Consensus 208 l~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~y 279 (665)
T PRK14873 208 LRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYP 279 (665)
T ss_pred HHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCc
Confidence 344444 356888999988766665543 34899999953222 2378999999999886532 1 111
Q ss_pred --HHHHHHHhhccCCceEEEEeecCChhHHHH
Q psy7789 77 --EDVRTIFSFFRGQRQTLLFSATMPKKIQNF 106 (197)
Q Consensus 77 --~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~ 106 (197)
.++...... ..+..+++-|||-+-+....
T Consensus 280 haRdvA~~Ra~-~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 280 HAREVALLRAH-QHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cHHHHHHHHHH-HcCCcEEEECCCCCHHHHHH
Confidence 223332222 35888999999987665543
No 141
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.44 E-value=0.0081 Score=42.11 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=31.5
Q ss_pred EEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc--CCceEEEEeecCChhH
Q psy7789 37 MMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR--GQRQTLLFSATMPKKI 103 (197)
Q Consensus 37 Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~--~~~q~i~~SAT~~~~~ 103 (197)
|-++|-..+...+.+ .....+.+++|+||||..--.. -. ....+..+. ....++++|||-|...
T Consensus 75 i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s-IA-~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 75 IDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS-IA-ARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp EEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH-HH-HHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred ccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH-Hh-hheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 344444444444433 3446889999999999862211 11 111122222 2458999999977543
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.43 E-value=0.021 Score=50.98 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=67.6
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~ 167 (197)
++.+||.|...+..++...|.-+ .+.++........-..-.++.....|...+.+-+.. .+.|+||.|.|++.++
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE 440 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMR--VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSE 440 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 46778888877777777666444 444443222111111124566778888888877664 3458999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCCh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++..|.+.|++...+++.-..
T Consensus 441 ~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 441 TLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred HHHHHHHHCCCCceeecccchh
Confidence 9999999999998888886443
No 143
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.22 E-value=0.015 Score=45.27 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHH-HHhcC----Cc--cCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMD-MLDKK----MV--SLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~-~l~~~----~~--~l~~l~~vViDEad~l~ 71 (197)
.|+++..++++.+.+...+... +||+.+|...+.- .++.. .. -.....++||||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 3899999999988665444444 7899999988874 44321 11 15788999999999886
No 144
>KOG1000|consensus
Probab=96.17 E-value=0.2 Score=42.15 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
.|.+|||.-...-+.+..++.++++....+.|..+..+|..
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~l 533 (689)
T KOG1000|consen 493 RKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTL 533 (689)
T ss_pred ceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHH
Confidence 48999999999999999999999999999999999999874
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.81 E-value=0.068 Score=47.88 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=65.6
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~ 167 (197)
.+.+||.|...+-.++...|.-+ .+.+++.......-..-.++....+|...+.+-+.. .+.|+||-|.|++.++
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE 438 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLE--VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSE 438 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHH
Confidence 46778888876666666666444 333443332221112234566777787777766553 3568999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCC
Q psy7789 168 AIHEYLLLKGKPFFTLKSLK 187 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~ 187 (197)
.++..|.+.|++..++++.-
T Consensus 439 ~ls~~L~~~gi~h~vLNAk~ 458 (870)
T CHL00122 439 LLSQLLKEYRLPHQLLNAKP 458 (870)
T ss_pred HHHHHHHHcCCccceeeCCC
Confidence 99999999999988888863
No 146
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.50 E-value=0.085 Score=47.91 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=29.5
Q ss_pred hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc
Q psy7789 32 KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~ 72 (197)
...+||||+.-.-|++-+.....-+..-+++||||||.+.+
T Consensus 414 a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred HhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 34699999998877776543322234557999999999963
No 147
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=95.11 E-value=0.16 Score=32.35 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=32.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
..++++||++-..+...+..|+..|+++..+.||++.
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~~ 87 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKT 87 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHHH
Confidence 3589999998888999999999999999999999864
No 148
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=95.04 E-value=0.16 Score=45.96 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=68.2
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC---CCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~ 167 (197)
++.+||.|...+..++...|.-+ .+.++........-..-.++....+|...+.+-+.+. +.|+||-|.|+...+
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se 582 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSE 582 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 56789999877767766666443 3444433221111111235667778888887776543 458999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.++..|.+.|++...+++.-...|
T Consensus 583 ~ls~~L~~~gi~h~vLNak~~~~E 606 (970)
T PRK12899 583 KLSRILRQNRIEHTVLNAKNHAQE 606 (970)
T ss_pred HHHHHHHHcCCcceecccchhhhH
Confidence 999999999999888888744433
No 149
>KOG0387|consensus
Probab=95.00 E-value=0.79 Score=40.78 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=45.5
Q ss_pred hHHHHHHHh---hcCCCCEEEEecccccHHHHHHHHH-hCCCCeEeecCCCChhhhhhhh
Q psy7789 141 KIVYLLECL---QKTEPPVLIFAEKKQDVDAIHEYLL-LKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 141 k~~~l~~~l---~~~~~~~lIF~~s~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|...+..++ ...+.++|.|..|+..-.-+-.+|. ..||.+..+.|..+...|..+.
T Consensus 531 Km~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 531 KMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred hHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 444444444 4455689999999999999999999 6899999999999999998653
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.94 E-value=0.12 Score=47.14 Aligned_cols=101 Identities=11% Similarity=0.135 Sum_probs=71.3
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC---CCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~ 167 (197)
.+-+||.|...+..++...|.-+ ++.++........-..-.++....+|..++.+-+... +.|+||=+.|++.++
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~--Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE 642 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLD--VVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISE 642 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHH
Confidence 45678888877777777777555 4444433222221122355677788888888777643 568999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
.++..|+..|++..++++.....|-+
T Consensus 643 ~lS~~L~~~gI~H~VLNAK~h~~EAe 668 (1112)
T PRK12901 643 LLSRMLKMRKIPHNVLNAKLHQKEAE 668 (1112)
T ss_pred HHHHHHHHcCCcHHHhhccchhhHHH
Confidence 99999999999888888876555443
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.41 E-value=0.041 Score=48.01 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=31.1
Q ss_pred cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~ 72 (197)
..+||+|++..-|+..+....-.+-..+++||||||.+.+
T Consensus 181 ~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 4589999999888876654322356689999999999963
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=94.30 E-value=0.043 Score=33.74 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.|++.++.+..+||+|++++|.+++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 30 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEIL 30 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHH
Confidence 57788888899999999999999998765
No 153
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=94.25 E-value=0.035 Score=34.27 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=23.6
Q ss_pred HHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 171 EYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 171 ~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
++|+..|+++..+||+|++++|++++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~ 26 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEIL 26 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHH
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHH
Confidence 36889999999999999999999876
No 154
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=94.05 E-value=0.35 Score=31.96 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC--eEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP--FFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~--~~~~h~~~~~~ 190 (197)
..++++||.+-.++...+..|+..|++ +..+.|||+.=
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W 105 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGW 105 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHH
Confidence 457999999988888889999999994 88899998653
No 155
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=93.92 E-value=0.29 Score=31.47 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 188 (197)
..++++||.+-.++...+..|+..|+++..+.||+.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 457999999988888899999999999888889874
No 156
>KOG0389|consensus
Probab=93.42 E-value=0.13 Score=45.50 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=50.0
Q ss_pred cCCCCeeEEEEEcCCChHHhHHH-Hhc---CCcEEEeCchHHHHHH-hcCCccCCCccEEEeehhhhhhcCCCHHHHHHH
Q psy7789 8 ALPIPLRTCLAIGGVPMNQSLDV-IKK---GCHMMVATPGRLMDML-DKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTI 82 (197)
Q Consensus 8 ~~~~~i~~~~~~gg~~~~~~~~~-l~~---~~~Ili~TP~~l~~~l-~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i 82 (197)
-+| .++|...+|....+++.+. +.. .+||+++|=.....-= .++-+.-.+++++|+||+|.|=+.+ .+.++.+
T Consensus 470 wCP-sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 470 WCP-SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred hCC-ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 344 5888888887655544433 332 5899999942222100 1122334667799999999986542 2333333
Q ss_pred HhhccCCceEEEEeec
Q psy7789 83 FSFFRGQRQTLLFSAT 98 (197)
Q Consensus 83 ~~~~~~~~q~i~~SAT 98 (197)
+. + +..+.++++.|
T Consensus 548 M~-I-~An~RlLLTGT 561 (941)
T KOG0389|consen 548 MS-I-NANFRLLLTGT 561 (941)
T ss_pred cc-c-cccceEEeeCC
Confidence 22 2 24456666666
No 157
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=93.32 E-value=0.09 Score=46.34 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=41.8
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHH-HHHhcC------CccCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLM-DMLDKK------MVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~-~~l~~~------~~~l~~l~~vViDEad~l~ 71 (197)
+|++|+.++++.+..+..... .+||+.+|..-+- ++++.. ..-.+.+.+.||||+|.++
T Consensus 146 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 489999999988766544444 3899999987654 233321 1224678899999999876
No 158
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.24 E-value=0.22 Score=40.38 Aligned_cols=131 Identities=11% Similarity=0.143 Sum_probs=65.4
Q ss_pred CCeeEEEEEcCCChHHhH-HHHhcCC-----cEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-------CCHH
Q psy7789 11 IPLRTCLAIGGVPMNQSL-DVIKKGC-----HMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-------GFEE 77 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~-~~l~~~~-----~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-------~~~~ 77 (197)
.+-++..+++..+..... ..+.... ...+..|..+..............+.+||||||++... ....
T Consensus 30 ~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~ 109 (352)
T PF09848_consen 30 EGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPN 109 (352)
T ss_pred cCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHH
Confidence 355666666665544422 3333322 33344444443333222234578899999999999873 1346
Q ss_pred HHHHHHhhcc------CCceEEEEeecCChh-HHHHHHHhcCCCeEEEeCCCCccCc-ceeEEEEEcCchhhHHHHHHHh
Q psy7789 78 DVRTIFSFFR------GQRQTLLFSATMPKK-IQNFARSALVKPITINVGRAGAASM-NVVQEVEYVKQEAKIVYLLECL 149 (197)
Q Consensus 78 ~i~~i~~~~~------~~~q~i~~SAT~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~i~~~~~~~~~~~k~~~l~~~l 149 (197)
++..+++.-. ...|.+--+...+.+ ..+....+-... ... .+..++......+-..++..++
T Consensus 110 ~L~~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~~~~~~----------~~~~~L~~q~R~~~~~~~~~wI~~ll 179 (352)
T PF09848_consen 110 QLDEIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAENLGIEV----------RHFFELKTQFRCHGSKEYIDWIDNLL 179 (352)
T ss_pred HHHHHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHhcCCcc----------ccCcCcCcceecCCCHHHHHHHHHHH
Confidence 6777766621 123444444433333 233333321111 001 3444555445566667777777
Q ss_pred hc
Q psy7789 150 QK 151 (197)
Q Consensus 150 ~~ 151 (197)
..
T Consensus 180 ~~ 181 (352)
T PF09848_consen 180 DN 181 (352)
T ss_pred hc
Confidence 53
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=93.03 E-value=0.3 Score=44.98 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=47.7
Q ss_pred ChHHhHHHHhcC-CcEEEeCchHHHHHHhcC-CccCCCcc-EEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecC
Q psy7789 23 PMNQSLDVIKKG-CHMMVATPGRLMDMLDKK-MVSLDVCR-YLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 23 ~~~~~~~~l~~~-~~Ili~TP~~l~~~l~~~-~~~l~~l~-~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
+.....+.+.++ -.|+|+|-.++....... .....+-. .||+||||+. +++..-..+-..++ ++..++|+.|-
T Consensus 338 s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTP 413 (962)
T COG0610 338 STSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTP 413 (962)
T ss_pred CHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCc
Confidence 444445566654 489999999999988654 11122322 6789999997 34444444444453 48889999884
No 160
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=92.94 E-value=0.18 Score=32.72 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=32.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
..+++++|.+-.++...+..|+..|+++..+.||+..
T Consensus 61 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 61 DQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 3579999999889999999999999998889999864
No 161
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=92.83 E-value=0.096 Score=41.31 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=29.2
Q ss_pred EEEeehhhhhhcCCC--------HHHHHHHHhhccCCceEEEEeecCChhHHH
Q psy7789 61 YLCLDEADRMVDMGF--------EEDVRTIFSFFRGQRQTLLFSATMPKKIQN 105 (197)
Q Consensus 61 ~vViDEad~l~~~~~--------~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 105 (197)
.+|+||||..-+... ...+..+-+.+| +.+++++|||--.+..+
T Consensus 175 vivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 175 VIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRN 226 (303)
T ss_pred eEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCce
Confidence 889999999865322 123444445554 66699999997655444
No 162
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.68 E-value=0.075 Score=38.51 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=26.3
Q ss_pred cCCcEEEeCchHHHHHHhcCCcc--CCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMVS--LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~~--l~~l~~vViDEad~l~~ 72 (197)
..+||+|++=.-|++......+. ..+-..|||||||.+.+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 45999999987777654332221 12336899999999865
No 163
>KOG3089|consensus
Probab=92.58 E-value=0.23 Score=37.19 Aligned_cols=40 Identities=25% Similarity=0.523 Sum_probs=32.7
Q ss_pred hHHHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeeh
Q psy7789 27 SLDVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDE 66 (197)
Q Consensus 27 ~~~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDE 66 (197)
+.+...+ ..++-||||+|+..++....++++.++++|+|=
T Consensus 188 ~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 188 QVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred HHHHHhhcceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 4444433 378889999999999999889999999999873
No 164
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=92.57 E-value=0.69 Score=31.29 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=33.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC--CeEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK--PFFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~ 190 (197)
..++++||++-.++...+..|+..|+ ++..+.||+..=
T Consensus 72 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W 111 (122)
T cd01526 72 DSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAW 111 (122)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHH
Confidence 45799999998899999999999999 699999998654
No 165
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=92.51 E-value=0.13 Score=45.96 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=42.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHH-HHHhcC------CccCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLM-DMLDKK------MVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~-~~l~~~------~~~l~~l~~vViDEad~l~ 71 (197)
+|++|+.++|+.+.....+.. .+||+.+|...+- ++++.. ..-.+.+.+.||||+|.++
T Consensus 148 LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 489999999987766554444 3899999997765 344321 1124678899999999875
No 166
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.14 E-value=0.65 Score=42.73 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC
Q psy7789 143 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~ 176 (197)
..+.+++...++++|||++|.+..+.+++.|...
T Consensus 742 ~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~ 775 (928)
T PRK08074 742 AYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNE 775 (928)
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhc
Confidence 3444555566789999999999999999999764
No 167
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=91.86 E-value=0.27 Score=44.69 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCCEEEEecccccHHHHHHHHHh
Q psy7789 144 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL 175 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~ 175 (197)
.+.+++...++++|||++|.+..+.+++.|..
T Consensus 665 ~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~ 696 (850)
T TIGR01407 665 YIIEITAITSPKILVLFTSYEMLHMVYDMLNE 696 (850)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhh
Confidence 44455555677999999999999999999976
No 168
>KOG0391|consensus
Probab=91.80 E-value=0.23 Score=46.02 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=51.6
Q ss_pred CeeEEEEEcCCChHH-hHHHHhc-C-CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC
Q psy7789 12 PLRTCLAIGGVPMNQ-SLDVIKK-G-CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG 88 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~-~~~~l~~-~-~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~ 88 (197)
|+++.+.+|.-.-++ ....|.+ + .||.|++=..++.- ...+.-++++|+|+||||.+-++ -...++.++.. +
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd--~~AFkrkrWqyLvLDEaqnIKnf-ksqrWQAllnf--n 764 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQD--LTAFKRKRWQYLVLDEAQNIKNF-KSQRWQALLNF--N 764 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhH--HHHHHhhccceeehhhhhhhcch-hHHHHHHHhcc--c
Confidence 899999999644322 3333533 3 68888885333322 23445577889999999998665 33456666554 3
Q ss_pred CceEEEEeec
Q psy7789 89 QRQTLLFSAT 98 (197)
Q Consensus 89 ~~q~i~~SAT 98 (197)
..|.++++.|
T Consensus 765 sqrRLLLtgT 774 (1958)
T KOG0391|consen 765 SQRRLLLTGT 774 (1958)
T ss_pred hhheeeecCC
Confidence 4455666666
No 169
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=91.69 E-value=0.93 Score=28.14 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 188 (197)
..++++||++...+...+..|+..|+ ++..+-||+.
T Consensus 50 ~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 50 DKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 35799999999999999999999976 6778888875
No 170
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=91.67 E-value=0.46 Score=30.10 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=33.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~ 190 (197)
..++++||.+-..+..++..|+..|++ +..+.|++..=
T Consensus 56 ~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w 94 (100)
T smart00450 56 DKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEW 94 (100)
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHH
Confidence 357999999999999999999999997 88999998653
No 171
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=91.37 E-value=0.18 Score=45.36 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=41.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHH-HHHhcC------CccCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLM-DMLDKK------MVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~-~~l~~~------~~~l~~l~~vViDEad~l~ 71 (197)
+|+.|..+.++.+..+..+... +||+.+|..-+- ++++.. ..-.+.+.+.||||+|.++
T Consensus 144 LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 3788988888877765544444 899999986443 333321 1124778899999999875
No 172
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=91.34 E-value=0.19 Score=39.67 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.2
Q ss_pred cCCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~~ 72 (197)
..+||||++-.-|++...... ..+ .-.+|||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 459999999888876553222 233 367999999999854
No 173
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=91.34 E-value=0.19 Score=39.67 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.2
Q ss_pred cCCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~~ 72 (197)
..+||||++-.-|++...... ..+ .-.+|||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 459999999888876553222 233 367999999999854
No 174
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=91.14 E-value=0.47 Score=30.48 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=31.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 188 (197)
..++++||++-..+...+..|+..|+ ++..+.|+|.
T Consensus 56 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 56 ATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 35799999998888999999999998 6888999885
No 175
>PRK05642 DNA replication initiation factor; Validated
Probab=90.97 E-value=0.5 Score=36.05 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=53.8
Q ss_pred eEEEEEcCCC--hHHhHHHH-----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHHhh
Q psy7789 14 RTCLAIGGVP--MNQSLDVI-----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIFSF 85 (197)
Q Consensus 14 ~~~~~~gg~~--~~~~~~~l-----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~~ 85 (197)
+...++|... ...-...+ ..+..+++.+.+.+......-.-.+.+.+++++|++|.+... .....+-.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 5667888753 33333332 246788888887776543211113567789999999988543 234556777766
Q ss_pred ccCCceEEEEeecCChh
Q psy7789 86 FRGQRQTLLFSATMPKK 102 (197)
Q Consensus 86 ~~~~~q~i~~SAT~~~~ 102 (197)
+..+...++++++.++.
T Consensus 126 ~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 126 LRDSGRRLLLAASKSPR 142 (234)
T ss_pred HHhcCCEEEEeCCCCHH
Confidence 65544456666665543
No 176
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=90.56 E-value=1 Score=28.72 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCEEEEecc--cccHHHHHHHHHhCCC-CeEeecCCCC
Q psy7789 153 EPPVLIFAEK--KQDVDAIHEYLLLKGK-PFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s--~~~~~~l~~~L~~~~~-~~~~~h~~~~ 188 (197)
..++++||.+ +..+...+..|+..|+ ++..+.|||.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 4579999988 3447788889999997 6888889875
No 177
>KOG0391|consensus
Probab=90.45 E-value=0.38 Score=44.69 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=58.2
Q ss_pred EEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 133 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
-+.|+.-.+++.|+.-|+.++.++|||+.=.+.-+-|-.+|+.+||--..+.|..+-++|.+.++
T Consensus 1256 qyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLme 1320 (1958)
T KOG0391|consen 1256 QYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALME 1320 (1958)
T ss_pred ecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHH
Confidence 34677778888888888889899999999999999999999999999999999999999998763
No 178
>KOG0921|consensus
Probab=90.21 E-value=0.77 Score=41.58 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCEEEEecccccHHHHHHHHHhC-------CCCeEeecCCCChhhhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK-------GKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~R~~i 195 (197)
+-+++|.+-......|..+|..+ .+++...|+....++..+|
T Consensus 644 gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkv 692 (1282)
T KOG0921|consen 644 GAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKV 692 (1282)
T ss_pred cceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhc
Confidence 46899999999999999988654 4678889987776665544
No 179
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=89.94 E-value=1.1 Score=29.05 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=32.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~ 190 (197)
..++++||++-.++...+..|.+.|+ ++..+.||+..=
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w 96 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAW 96 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHH
Confidence 45899999998899999999999998 488899997653
No 180
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=89.82 E-value=3.1 Score=36.71 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=36.6
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChh
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQ 190 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~ 190 (197)
....+..+++..+++++||++|.+..+.+++.+...... ....+|..+.+
T Consensus 467 ~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~ 517 (654)
T COG1199 467 LAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE 517 (654)
T ss_pred HHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH
Confidence 345666667777789999999999999999999987642 33445544443
No 181
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.67 E-value=0.34 Score=44.50 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=30.0
Q ss_pred cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~ 72 (197)
..+||+|+.-.-|+.-+....--+...+++||||||++.+
T Consensus 430 ~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 4599999998877766533222346679999999999964
No 182
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=89.50 E-value=0.4 Score=43.24 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHH-HHHhcC------CccCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLM-DMLDKK------MVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~-~~l~~~------~~~l~~l~~vViDEad~l~ 71 (197)
+|+.|+.+..+.+......... +||..+|..-+- ++++.. ..-.+.+.+.||||+|.++
T Consensus 146 LGLsvG~i~~~~~~~~rr~aY~--~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 146 LGLSVGINKANMDPNLKREAYA--CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred hCCceeeeCCCCChHHHHHhcc--CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 3788888888776665444443 899999987654 344432 1124778899999999886
No 183
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=89.48 E-value=1.7 Score=32.29 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=21.9
Q ss_pred hcCCcEEEeCchHHHHHHhcCCcc-C-CCccEEEeehhhhhh
Q psy7789 32 KKGCHMMVATPGRLMDMLDKKMVS-L-DVCRYLCLDEADRMV 71 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~~~~~-l-~~l~~vViDEad~l~ 71 (197)
-+.++|+++|+...... .+. . ..++++|||||-.+.
T Consensus 168 l~~~~vi~~T~~~~~~~----~~~~~~~~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 168 LKEADVIFTTLSSAASP----FLSNFKEKFDVVIVDEASQIT 205 (236)
T ss_dssp HHT-SEEEEETCGGG-C----CGTT-----SEEEETTGGGS-
T ss_pred cccccccccccccchhh----HhhhhcccCCEEEEeCCCCcc
Confidence 34699999999776222 222 2 278899999998874
No 184
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=89.46 E-value=0.31 Score=36.56 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
.....++++||+|.-++......+..++....+..|+++.|..
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 3556799999999999877788888888888888999988643
No 185
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=89.13 E-value=0.49 Score=30.74 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..+++|||.+-.++...+..|+..|++ +..+.||+..
T Consensus 61 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 98 (101)
T cd01518 61 GKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILK 98 (101)
T ss_pred CCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHH
Confidence 357999999888888889999999994 8889998753
No 186
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=89.11 E-value=0.96 Score=34.16 Aligned_cols=92 Identities=14% Similarity=0.206 Sum_probs=55.2
Q ss_pred CeeEEEEEcCCC--hHHhHHHH-------hcCCcEEEeCchHHHHHH----hcCC-----ccCCCccEEEeehhhhhhcC
Q psy7789 12 PLRTCLAIGGVP--MNQSLDVI-------KKGCHMMVATPGRLMDML----DKKM-----VSLDVCRYLCLDEADRMVDM 73 (197)
Q Consensus 12 ~i~~~~~~gg~~--~~~~~~~l-------~~~~~Ili~TP~~l~~~l----~~~~-----~~l~~l~~vViDEad~l~~~ 73 (197)
...+..++|+.. ...-...+ ..+..|+..+.+.+...+ ..+. -.+...+++++|++|.+.+.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc
Confidence 456778999864 33322222 135789998888776543 2222 13688999999999998653
Q ss_pred C-CHHHHHHHHhhcc-CCceEEEEeecCChhH
Q psy7789 74 G-FEEDVRTIFSFFR-GQRQTLLFSATMPKKI 103 (197)
Q Consensus 74 ~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~ 103 (197)
. ..+.+-.++..+. ...|+++.|...|.+.
T Consensus 113 ~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 113 QRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 1 2344555555553 3567777776665543
No 187
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.03 E-value=1 Score=30.47 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=20.4
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEee
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSA 97 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SA 97 (197)
.++|+||+|.+.. .+.+..+..... ...++++++.
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEES
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEEC
Confidence 6899999999751 444444433333 3445555543
No 188
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.98 E-value=3.3 Score=37.02 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCCEEEEecccccHHHHHHHHHhCC
Q psy7789 144 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG 177 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~ 177 (197)
.+.++++..++.+|||++|...-+.+++.+.+.|
T Consensus 513 ~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~ 546 (705)
T TIGR00604 513 LLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMG 546 (705)
T ss_pred HHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcC
Confidence 3445555567789999999999999999887654
No 189
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=88.91 E-value=0.71 Score=31.57 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=31.0
Q ss_pred CCCEEEEec-ccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 153 EPPVLIFAE-KKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~-s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
..++++||+ +-.++...+..|+..|+++..+.||++.
T Consensus 86 ~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 86 DPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 357999997 5677888888898899999999999865
No 190
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=88.87 E-value=0.92 Score=29.23 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=31.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..++++||++-.++...+..|.+.|+ ++..+.|++..
T Consensus 54 ~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~ 91 (99)
T cd01527 54 ANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDA 91 (99)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHH
Confidence 35899999998888899999999888 68889998754
No 191
>PF13173 AAA_14: AAA domain
Probab=88.86 E-value=0.88 Score=31.01 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=28.2
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
.-.++++||+|.+-+ +...++.+.... ++.++++.+....
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccchH
Confidence 567999999999865 467777776654 4567777665543
No 192
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=88.80 E-value=1.6 Score=28.61 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=28.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 188 (197)
..++++||++-.++...+..|++.|+.....-||+.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457899999988999999999999986444457764
No 193
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=88.59 E-value=0.94 Score=29.98 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=31.9
Q ss_pred CCCEEEEeccc--ccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 153 EPPVLIFAEKK--QDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~--~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
..++++||++- ..+...+..|+..|+++..+.|++..=.
T Consensus 64 ~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~W~ 104 (110)
T cd01521 64 EKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDWWK 104 (110)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHHHH
Confidence 35799999875 4788899999999999999999986543
No 194
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.43 E-value=0.75 Score=41.73 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=29.9
Q ss_pred cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~ 72 (197)
..+||+|+.-.-|+..+.... .+...+++||||||.+.+
T Consensus 412 ~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 412 KTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred HhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHH
Confidence 459999999887776654332 256789999999999963
No 195
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.12 E-value=0.92 Score=40.40 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=51.0
Q ss_pred cCchhhHHHHHHHhhcC---CCCEEEEecccccHHHHHHHHHhC-CCCeEeecCCCChhhhhhh
Q psy7789 136 VKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLLK-GKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 136 ~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~R~~i 195 (197)
+....|.+.+++++.+. ++++||-++.+.-...+.+.|+.+ |.++..+||+|++.+|..+
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~ 288 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRV 288 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHH
Confidence 45567888888887753 568999999999999999999887 8999999999999999764
No 196
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.02 E-value=3.9 Score=34.43 Aligned_cols=94 Identities=11% Similarity=0.199 Sum_probs=55.2
Q ss_pred CeeEEEEEcCCC--hHHhHHHH-----hcCCcEEEeCchHHHHHHh----cCCc-----cCCCccEEEeehhhhhhcCC-
Q psy7789 12 PLRTCLAIGGVP--MNQSLDVI-----KKGCHMMVATPGRLMDMLD----KKMV-----SLDVCRYLCLDEADRMVDMG- 74 (197)
Q Consensus 12 ~i~~~~~~gg~~--~~~~~~~l-----~~~~~Ili~TP~~l~~~l~----~~~~-----~l~~l~~vViDEad~l~~~~- 74 (197)
..+...++|+.. ...-...+ ..+..++..+.+.+...+. .+.. .+.+.+++++||+|.+....
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChh
Confidence 356788998864 33322222 2468899888877654432 2111 15778999999999986532
Q ss_pred CHHHHHHHHhhc-cCCceEEEEeecCChhHHH
Q psy7789 75 FEEDVRTIFSFF-RGQRQTLLFSATMPKKIQN 105 (197)
Q Consensus 75 ~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~ 105 (197)
..+.+..++..+ ....|+++.|.+.+.+...
T Consensus 220 ~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 220 TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 344444555433 2355666666555554443
No 197
>PRK06893 DNA replication initiation factor; Validated
Probab=87.92 E-value=1.2 Score=33.85 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=47.4
Q ss_pred EEEEEcCCC--hHHhHHHH-----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHHhhc
Q psy7789 15 TCLAIGGVP--MNQSLDVI-----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIFSFF 86 (197)
Q Consensus 15 ~~~~~gg~~--~~~~~~~l-----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~~~ 86 (197)
...++|... ...-...+ ..+..+.+.+..........-.-.+.+.+++++||+|.+... .....+..++...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~ 120 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRI 120 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHH
Confidence 346666643 33332222 234566666654322211111113567889999999998643 2233455555554
Q ss_pred cC-CceEEEEeecCChhH
Q psy7789 87 RG-QRQTLLFSATMPKKI 103 (197)
Q Consensus 87 ~~-~~q~i~~SAT~~~~~ 103 (197)
.. ..+++++|++.++..
T Consensus 121 ~~~~~~illits~~~p~~ 138 (229)
T PRK06893 121 KEQGKTLLLISADCSPHA 138 (229)
T ss_pred HHcCCcEEEEeCCCChHH
Confidence 43 446678888876543
No 198
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=87.90 E-value=0.57 Score=37.09 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCCccEEEeehhhhhhcCCCH--HHHHHHHhhccCCceEE
Q psy7789 56 LDVCRYLCLDEADRMVDMGFE--EDVRTIFSFFRGQRQTL 93 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~--~~i~~i~~~~~~~~q~i 93 (197)
--.++++||||+|.++..+.. ..+.+.++++.+..++-
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ip 182 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIP 182 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCC
Confidence 456889999999999875533 34667788887766653
No 199
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.88 E-value=1.5 Score=37.01 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=52.1
Q ss_pred CeeEEEEEcCCC--hHHhHHHH-------hcCCcEEEeCchHHHHHHhc------CCc-----cCCCccEEEeehhhhhh
Q psy7789 12 PLRTCLAIGGVP--MNQSLDVI-------KKGCHMMVATPGRLMDMLDK------KMV-----SLDVCRYLCLDEADRMV 71 (197)
Q Consensus 12 ~i~~~~~~gg~~--~~~~~~~l-------~~~~~Ili~TP~~l~~~l~~------~~~-----~l~~l~~vViDEad~l~ 71 (197)
.-+...++|+.. ...-...+ ..+..++..|++.+...+.. +.+ .+.+.++||+||+|.+.
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc
Confidence 346778898754 33322222 13578888888887765421 111 25778999999999885
Q ss_pred cC-CCHHHHHHHHhhccC-CceEEEEeecCC
Q psy7789 72 DM-GFEEDVRTIFSFFRG-QRQTLLFSATMP 100 (197)
Q Consensus 72 ~~-~~~~~i~~i~~~~~~-~~q~i~~SAT~~ 100 (197)
.. ...+.+..++..+.. ..|+++.|-..|
T Consensus 220 ~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 220 YKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 42 234455555555433 446665555443
No 200
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=87.74 E-value=1.1 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=31.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 188 (197)
..+++++|++-.++...+..|+..|+ ++..+.|++.
T Consensus 56 ~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 56 DRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 35899999999999999999999998 5888888874
No 201
>KOG0392|consensus
Probab=87.71 E-value=1.7 Score=40.79 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=52.1
Q ss_pred eeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHH---HHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 13 LRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMD---MLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~---~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
+++...+|+-..+...+.=-++.+|+|++=+-+.. .+.+ .+..|+|+||-|.+-+. ...+-...+.+..+
T Consensus 1057 L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~-----~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1057 LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK-----IDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh-----cccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 67777777644333322222348999999765552 2232 34459999999998553 55555666666656
Q ss_pred ceEEEEeecCChhHHHH
Q psy7789 90 RQTLLFSATMPKKIQNF 106 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~ 106 (197)
.++|+....+...+.+.
T Consensus 1130 hRLILSGTPIQNnvleL 1146 (1549)
T KOG0392|consen 1130 HRLILSGTPIQNNVLEL 1146 (1549)
T ss_pred ceEEeeCCCcccCHHHH
Confidence 66665555555444443
No 202
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=87.41 E-value=1.5 Score=28.48 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..++++||.+-..+...+..|+..|+. +..+.||+..
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a 102 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINA 102 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHH
Confidence 457999999888888999999999985 8889998853
No 203
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=87.19 E-value=0.87 Score=40.58 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=27.8
Q ss_pred cCCcEEEeCchHHHHHHhc-CCccCC--CccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDK-KMVSLD--VCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~-~~~~l~--~l~~vViDEad~l~~ 72 (197)
..+||||+.-.-|+.-+.. ..--+. +-+++||||||++.+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 4599999998777755532 111233 467899999999963
No 204
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.06 E-value=1.7 Score=38.52 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=47.1
Q ss_pred hhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhC-C-CCeEeecCCCChhhhhhh
Q psy7789 139 EAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK-G-KPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 139 ~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~-~-~~~~~~h~~~~~~~R~~i 195 (197)
..|...+++++.. .++++||-++++..+..+.+.|++. | .++..+||++++.+|.+.
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHH
Confidence 4677777776654 3568999999999999999999876 4 679999999999999763
No 205
>KOG0964|consensus
Probab=86.83 E-value=1.2 Score=40.41 Aligned_cols=94 Identities=12% Similarity=0.159 Sum_probs=65.0
Q ss_pred CeeEEEEEcC-CChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 12 PLRTCLAIGG-VPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 12 ~i~~~~~~gg-~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
||.+..-+.| ..-...+..|++|-.=+||-- -++.+=.-.+.. +-++||+|.-++.+++..+..+++.+..+.
T Consensus 1078 GIsI~VSFnskq~E~~~m~QLSGGQKsvvALa-LIFaIQrcDPAP-----FYlfDEIDAaLDaQyR~aVa~lIkelS~~a 1151 (1200)
T KOG0964|consen 1078 GISIKVSFNSKQGETLEMEQLSGGQKSVVALA-LIFAIQRCDPAP-----FYLFDEIDAALDAQYRTAVADLIKELSDSA 1151 (1200)
T ss_pred ceeEEEEeecCccHHHHHHHhcCchHHHHHHH-HHHHHHhcCCcc-----hhhHhHHhhhccHHHHHHHHHHHHHHhhcc
Confidence 4555554443 444445577887765555432 111111112222 779999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCC
Q psy7789 91 QTLLFSATMPKKIQNFARSALVK 113 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~ 113 (197)
|+|+ .|+-|++...+..|++-
T Consensus 1152 QFI~--TTFRpEll~vAdKfygV 1172 (1200)
T KOG0964|consen 1152 QFIT--TTFRPELLSVADKFYGV 1172 (1200)
T ss_pred ceEe--ecccHHHHHHHHhhhce
Confidence 9886 57889999999998864
No 206
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=86.51 E-value=3 Score=27.49 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=29.5
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||++-.++...+..|...|++....-||+..
T Consensus 61 ~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~~ 96 (104)
T PRK10287 61 DTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLKD 96 (104)
T ss_pred CeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHHH
Confidence 469999999889999999999999875555687654
No 207
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=86.36 E-value=0.84 Score=29.49 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=31.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..+++|||.+-.++...+..|...|++ +..+-|++..
T Consensus 61 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~ 98 (103)
T cd01447 61 DKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKD 98 (103)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHH
Confidence 357999998878888889999999986 8888888754
No 208
>PRK08727 hypothetical protein; Validated
Probab=86.16 E-value=1.7 Score=33.12 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=46.9
Q ss_pred eEEEEEcCCC--hHHhHHH-----HhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC-CHHHHHHHHhh
Q psy7789 14 RTCLAIGGVP--MNQSLDV-----IKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG-FEEDVRTIFSF 85 (197)
Q Consensus 14 ~~~~~~gg~~--~~~~~~~-----l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~-~~~~i~~i~~~ 85 (197)
....++|+.. ...-... ...+..+++.+...+...+....-.+.+.++||+||+|.+..+. ....+-.++..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 4567787753 3322222 23467777766655554333222245677899999999886542 22233344444
Q ss_pred ccC-CceEEEEeecCCh
Q psy7789 86 FRG-QRQTLLFSATMPK 101 (197)
Q Consensus 86 ~~~-~~q~i~~SAT~~~ 101 (197)
... ..++++.|...+.
T Consensus 122 ~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 122 ARAAGITLLYTARQMPD 138 (233)
T ss_pred HHHcCCeEEEECCCChh
Confidence 332 3345555544333
No 209
>KOG0953|consensus
Probab=85.91 E-value=2.5 Score=36.36 Aligned_cols=156 Identities=11% Similarity=0.016 Sum_probs=84.5
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHH-HHhhccC
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRT-IFSFFRG 88 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~-i~~~~~~ 88 (197)
..||.|-+++|..-....-+ .+.+..+=||-|...- -...+..||||.-.+-+.+.+-.+-. ++.....
T Consensus 237 a~gipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad 306 (700)
T KOG0953|consen 237 ALGIPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD 306 (700)
T ss_pred hcCCCccccccceeeecCCC--CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh
Confidence 35788888888532222111 1236666677533221 13456899999999988766544443 3333333
Q ss_pred CceEEEEeecCChhHHHHHHHhcCC---CeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC-CCCEEEEecccc
Q psy7789 89 QRQTLLFSATMPKKIQNFARSALVK---PITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQ 164 (197)
Q Consensus 89 ~~q~i~~SAT~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~lIF~~s~~ 164 (197)
+..+..= +.+...++..+.. ...+. .|-....-.-.+.++.-+... ++-++| |-|++
T Consensus 307 EiHLCGe-----psvldlV~~i~k~TGd~vev~-------------~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk 367 (700)
T KOG0953|consen 307 EIHLCGE-----PSVLDLVRKILKMTGDDVEVR-------------EYERLSPLVVEETALGSLSNLKPGDCVV-AFSKK 367 (700)
T ss_pred hhhccCC-----chHHHHHHHHHhhcCCeeEEE-------------eecccCcceehhhhhhhhccCCCCCeEE-Eeehh
Confidence 3333221 3344444444432 11111 111111111112333334433 344554 55788
Q ss_pred cHHHHHHHHHhCCCC-eEeecCCCChhhhhh
Q psy7789 165 DVDAIHEYLLLKGKP-FFTLKSLKEDQNNQT 194 (197)
Q Consensus 165 ~~~~l~~~L~~~~~~-~~~~h~~~~~~~R~~ 194 (197)
..-.+...+.+.|.. +++++|+++++.|.+
T Consensus 368 ~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 368 DIFTVKKKIEKAGNHKCAVIYGSLPPETRLA 398 (700)
T ss_pred hHHHHHHHHHHhcCcceEEEecCCCCchhHH
Confidence 888888888888664 999999999998864
No 210
>KOG0347|consensus
Probab=85.88 E-value=0.83 Score=39.12 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=37.9
Q ss_pred EEEEecccccHHHHHHHHHh----CCCCeEeecCCCChhhhhhhhC
Q psy7789 156 VLIFAEKKQDVDAIHEYLLL----KGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+|||++|++-|..+.+.|.. .|+++..+.|||+....+++++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~ 311 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLN 311 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHh
Confidence 89999999999999998865 3899999999999999988764
No 211
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=85.87 E-value=1 Score=29.28 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=31.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..++++||++-.++...+..|...|+ ++..+.|++..
T Consensus 66 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~ 103 (106)
T cd01519 66 DKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLD 103 (106)
T ss_pred CCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHH
Confidence 35799999998888899999999998 48888888753
No 212
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=85.38 E-value=13 Score=28.85 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=47.0
Q ss_pred cceeEEEEEcCchhhHHHHHHHhhcCC--CCEEEEe-cccccHHHHHHHHHhCCCCeEeecCC
Q psy7789 127 MNVVQEVEYVKQEAKIVYLLECLQKTE--PPVLIFA-EKKQDVDAIHEYLLLKGKPFFTLKSL 186 (197)
Q Consensus 127 ~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lIF~-~s~~~~~~l~~~L~~~~~~~~~~h~~ 186 (197)
+....-+.+++..+|-..|..++...+ ++.|||+ ++.+....+-+.+++.|+....+|-.
T Consensus 149 ~~~~~GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 149 PSFYDGILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred ceeecCeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 334455667788888888888888654 4678888 77889999999999999988888743
No 213
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=85.36 E-value=9.8 Score=34.08 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC-CCCeEeecCC
Q psy7789 143 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GKPFFTLKSL 186 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~ 186 (197)
..+.+++. .++.++||++|.+..+.+++.|... ++++ ..+|.
T Consensus 525 ~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~ 567 (697)
T PRK11747 525 EFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD 567 (697)
T ss_pred HHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC
Confidence 34445555 5567999999999999999999753 4443 34554
No 214
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=85.15 E-value=2.1 Score=26.07 Aligned_cols=51 Identities=12% Similarity=0.261 Sum_probs=37.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEA 67 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEa 67 (197)
.|+++..++|+.+..+..+.+. +..+|+|+|- .+ ...+++..++.+|+-+.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~-~~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD-----IL-GEGIDLPDASHVIFYDP 60 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC-----GG-TTSSTSTTESEEEESSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec-----cc-ccccccccccccccccc
Confidence 3799999999988666554443 3589999993 33 34566788889987655
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=85.01 E-value=3.3 Score=29.68 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=43.2
Q ss_pred cCCCccEEEeehhhhhhcCCC--HHHHHHHHhhccCCceEEEEeecCChhHHHHHH
Q psy7789 55 SLDVCRYLCLDEADRMVDMGF--EEDVRTIFSFFRGQRQTLLFSATMPKKIQNFAR 108 (197)
Q Consensus 55 ~l~~l~~vViDEad~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 108 (197)
.....++||+||+=..++.++ .+.+..+++.-|...-+|+.+-..|+++.+.+.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 356789999999988877663 567778888888888899998888888777653
No 216
>KOG0390|consensus
Probab=85.00 E-value=1.4 Score=39.43 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=39.1
Q ss_pred hhHHHHHHHhhcCCCCEEEEe---cccccHHHHHHHH-HhCCCCeEeecCCCChhhhhhhhC
Q psy7789 140 AKIVYLLECLQKTEPPVLIFA---EKKQDVDAIHEYL-LLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~---~s~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.|+..|..++.....++++|+ ...+...++.+.+ +-+|+.+..+||.|+..+|+.+.+
T Consensus 578 ~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd 639 (776)
T KOG0390|consen 578 GKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVD 639 (776)
T ss_pred hHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHH
Confidence 356666666654444555555 4445555554444 445999999999999999998863
No 217
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.97 E-value=3 Score=30.36 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=43.5
Q ss_pred CCCccEEEeehhhhhhcCCC--HHHHHHHHhhccCCceEEEEeecCChhHHHHHHH
Q psy7789 56 LDVCRYLCLDEADRMVDMGF--EEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 109 (197)
-...++||+||+-..++.++ .+.+..+++.-|+..-+|+..-..|+++.+.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 46789999999998888764 4577788888888888999988888887776643
No 218
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=84.47 E-value=2.3 Score=35.73 Aligned_cols=44 Identities=14% Similarity=0.312 Sum_probs=31.2
Q ss_pred cCCCccEE-EeehhhhhhcCC---CHHHHHHHHhhccCC-ceEEEEeec
Q psy7789 55 SLDVCRYL-CLDEADRMVDMG---FEEDVRTIFSFFRGQ-RQTLLFSAT 98 (197)
Q Consensus 55 ~l~~l~~v-ViDEad~l~~~~---~~~~i~~i~~~~~~~-~q~i~~SAT 98 (197)
++++.++| .|||||.++++- +.+.+..+.+.+++. .=+.++|-+
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~ 299 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQN 299 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 46778875 599999999764 667777777777653 345555554
No 219
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=84.45 E-value=0.82 Score=41.89 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=39.1
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHH-HHHhcC------CccCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLM-DMLDKK------MVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~-~~l~~~------~~~l~~l~~vViDEad~l~ 71 (197)
.|++|.++..+.+.+...+.. .+||..||..-+- ++|+.. ..-.+.+.|.||||+|.++
T Consensus 206 lGLtVg~i~~~~~~~~Rr~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 206 HGLSVGVILNTMRPEERREQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred hCCeeeeeCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 378888887766555443332 3899999986543 344321 1124778899999999875
No 220
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=83.99 E-value=2 Score=28.60 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=30.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 188 (197)
..++++||++-..+...+..|+..|+ ++..+-|++.
T Consensus 78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 78 DKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 45799999998888899999999998 5888888874
No 221
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=83.98 E-value=2.8 Score=28.05 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=30.9
Q ss_pred CCCEEEEecc-cccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEK-KQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s-~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..++++||++ -..+...+..|+..|++ +..+-|++..
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 3579999998 58888889999999975 8888898854
No 222
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=83.89 E-value=2 Score=30.74 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCcEEEeCchHH-----HH----HHh---cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 34 GCHMMVATPGRL-----MD----MLD---KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 34 ~~~Ili~TP~~l-----~~----~l~---~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
.||+.+..|+.- .+ +.. .... -...+.+||||||.|... ....+.+.+..-|.+..+++++....
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~-~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPS-EGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-T-TSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHHh-cCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 488888887643 12 221 1222 267889999999998543 45566666666666667777665543
No 223
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.79 E-value=2.6 Score=35.43 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=48.5
Q ss_pred CeeEEEEEcCCC--hHHhHHHH-----hc--CCcEEEeCchHHHHHH----hcCC-----ccCCCccEEEeehhhhhhcC
Q psy7789 12 PLRTCLAIGGVP--MNQSLDVI-----KK--GCHMMVATPGRLMDML----DKKM-----VSLDVCRYLCLDEADRMVDM 73 (197)
Q Consensus 12 ~i~~~~~~gg~~--~~~~~~~l-----~~--~~~Ili~TP~~l~~~l----~~~~-----~~l~~l~~vViDEad~l~~~ 73 (197)
..+..+++|+.. ...-...+ .. +..++..|.+.+...+ .... -.+.+.++|++||+|.+...
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK 226 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC
Confidence 346678888754 33322222 12 4678877777665432 1111 12457889999999998653
Q ss_pred C-CHHHHHHHHhhcc-CCceEEEEeecCCh
Q psy7789 74 G-FEEDVRTIFSFFR-GQRQTLLFSATMPK 101 (197)
Q Consensus 74 ~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~ 101 (197)
. ..+.+..++..+- ...++++ +++.++
T Consensus 227 ~~~~~~l~~~~n~l~~~~~~iii-ts~~~p 255 (450)
T PRK00149 227 ERTQEEFFHTFNALHEAGKQIVL-TSDRPP 255 (450)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEE-ECCCCH
Confidence 2 2234444444443 3445555 455443
No 224
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.52 E-value=2.8 Score=37.73 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=24.1
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
.+.+.+||||+|.|.... .+.+.++++.-+....+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 567899999999985532 333444555544444555543
No 225
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.43 E-value=3.1 Score=34.40 Aligned_cols=89 Identities=15% Similarity=0.258 Sum_probs=48.0
Q ss_pred eeEEEEEcCCC--hHHhHHH----H-hc--CCcEEEeCchHHHHHHh----cCC-----ccCCCccEEEeehhhhhhcCC
Q psy7789 13 LRTCLAIGGVP--MNQSLDV----I-KK--GCHMMVATPGRLMDMLD----KKM-----VSLDVCRYLCLDEADRMVDMG 74 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~~~----l-~~--~~~Ili~TP~~l~~~l~----~~~-----~~l~~l~~vViDEad~l~~~~ 74 (197)
-+..+++|+.. ...-... + .. +..++..|.+.+...+. .+. -.+.+.++|++||+|.+....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCH
Confidence 35677888753 3322222 2 12 46788888776654321 111 124567899999999886532
Q ss_pred -CHHHHHHHHhhc-cCCceEEEEeecCChh
Q psy7789 75 -FEEDVRTIFSFF-RGQRQTLLFSATMPKK 102 (197)
Q Consensus 75 -~~~~i~~i~~~~-~~~~q~i~~SAT~~~~ 102 (197)
....+..++..+ ..+.++++ +++.++.
T Consensus 216 ~~~~~l~~~~n~~~~~~~~iii-ts~~~p~ 244 (405)
T TIGR00362 216 RTQEEFFHTFNALHENGKQIVL-TSDRPPK 244 (405)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE-ecCCCHH
Confidence 223344444443 23456555 4554433
No 226
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.43 E-value=4.7 Score=33.13 Aligned_cols=38 Identities=5% Similarity=-0.022 Sum_probs=31.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
...++++||++-.++...+..|+..|+ ++..+.|++..
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 94 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSA 94 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHH
Confidence 345799999998888889999999998 58888888754
No 227
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=83.40 E-value=3.9 Score=27.40 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQ 190 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~ 190 (197)
...++++||++-.++...+..|+..|+. +..+.|++..-
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~ 102 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGD 102 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecC
Confidence 3457999999989999999999999984 77788887653
No 228
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.29 E-value=3.4 Score=36.78 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=43.0
Q ss_pred hhhHHHHHHHhh---cCCCCEEEEecccccHHHHHHHHHhC-CCCeEeecCCCChhhhhh
Q psy7789 139 EAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLK-GKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 139 ~~k~~~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~R~~ 194 (197)
..|.......+. ..++++||-++++.-+..+++.|++. |.++..+||+++..+|.+
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLD 232 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 345544433332 23568999999999999999999875 889999999999988764
No 229
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=83.25 E-value=1.1 Score=39.47 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=30.3
Q ss_pred cCCcEEEeCchHHHHHHhcCCcc--CCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMVS--LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~~--l~~l~~vViDEad~l~~ 72 (197)
..++++|+++..+..-....... +-.-+.+|+||||++.+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchH
Confidence 45999999998888755433322 45677999999999976
No 230
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=83.17 E-value=3.5 Score=37.22 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=62.2
Q ss_pred EEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHH
Q psy7789 93 LLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAI 169 (197)
Q Consensus 93 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l 169 (197)
..++.|...+..++...|.-+-..+-..... .+.. ....++.....|+..+++.+.. .+.|+||-+.+++.++.+
T Consensus 368 ~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~-~R~D-~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~l 445 (822)
T COG0653 368 AGMTGTADTEEEEFDVIYGLDVVVIPTNRPI-IRLD-EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELL 445 (822)
T ss_pred cCCCCcchhhhhhhhhccCCceeeccCCCcc-cCCC-CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhH
Confidence 4566666666666665554443333222111 1111 1223455677888888877764 356999999999999999
Q ss_pred HHHHHhCCCCeEeecCCCChhh
Q psy7789 170 HEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 170 ~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.+.|++.|++-..+.+.-...+
T Consensus 446 s~~L~~~~i~h~VLNAk~h~~E 467 (822)
T COG0653 446 SKLLRKAGIPHNVLNAKNHARE 467 (822)
T ss_pred HHHHHhcCCCceeeccccHHHH
Confidence 9999999988767776655444
No 231
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=82.82 E-value=3.7 Score=35.98 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=53.4
Q ss_pred CeeEEEEEcCCC--hHHhHHHHh-------cCCcEEEeCchHHHHHHh----cCC-----ccCCCccEEEeehhhhhhcC
Q psy7789 12 PLRTCLAIGGVP--MNQSLDVIK-------KGCHMMVATPGRLMDMLD----KKM-----VSLDVCRYLCLDEADRMVDM 73 (197)
Q Consensus 12 ~i~~~~~~gg~~--~~~~~~~l~-------~~~~Ili~TP~~l~~~l~----~~~-----~~l~~l~~vViDEad~l~~~ 73 (197)
.-+..+++|+.. .......+. .+..++..|.+.+...+. .+. -.+.++++|+|||+|.+...
T Consensus 313 ~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 313 AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK 392 (617)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC
Confidence 345678888753 333332221 257888888877664332 111 12567899999999988653
Q ss_pred C-CHHHHHHHHhhccC-CceEEEEeecCChhH
Q psy7789 74 G-FEEDVRTIFSFFRG-QRQTLLFSATMPKKI 103 (197)
Q Consensus 74 ~-~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~ 103 (197)
. ....+..++..+.. +.|+++.|-..+.+.
T Consensus 393 e~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 393 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 2 23445555555543 567776555544443
No 232
>KOG4439|consensus
Probab=82.79 E-value=1.3 Score=39.11 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=35.0
Q ss_pred eeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHH----HHhc----CCccCCCccEEEeehhhhhhcC
Q psy7789 13 LRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMD----MLDK----KMVSLDVCRYLCLDEADRMVDM 73 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~----~l~~----~~~~l~~l~~vViDEad~l~~~ 73 (197)
++|.+.+|....+-..+.+.. +||+|+|=.-+-. -... ..+.-=....||+||||.+-+.
T Consensus 411 LsV~~~HG~n~r~i~~~~L~~-YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 411 LSVYLYHGPNKREISAKELRK-YDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred eEEEEecCCccccCCHHHHhh-cceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 777777776544434455554 9999999522222 0000 1111123558999999998664
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.30 E-value=8.8 Score=31.00 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=50.8
Q ss_pred eEEEEEcCCC--hHHhH-----HHHhcCCcEEEeCchHHHHHHhcC-----------CccCCCccEEEeehhhhhhcCC-
Q psy7789 14 RTCLAIGGVP--MNQSL-----DVIKKGCHMMVATPGRLMDMLDKK-----------MVSLDVCRYLCLDEADRMVDMG- 74 (197)
Q Consensus 14 ~~~~~~gg~~--~~~~~-----~~l~~~~~Ili~TP~~l~~~l~~~-----------~~~l~~l~~vViDEad~l~~~~- 74 (197)
...+++|... ..... ..+..+..|+..|-..+...+... .-.+.++++||||+........
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 5677888643 33322 223457889988888887765321 1235788999999998764332
Q ss_pred CHHHHHHHHhhccC-CceEEEEeecCCh
Q psy7789 75 FEEDVRTIFSFFRG-QRQTLLFSATMPK 101 (197)
Q Consensus 75 ~~~~i~~i~~~~~~-~~q~i~~SAT~~~ 101 (197)
....+-.++...-. ...+ ++|+.+++
T Consensus 264 ~~~~Lf~iin~R~~~~k~t-IiTSNl~~ 290 (329)
T PRK06835 264 SKSELFNLINKRLLRQKKM-IISTNLSL 290 (329)
T ss_pred HHHHHHHHHHHHHHCCCCE-EEECCCCH
Confidence 23345555554433 3444 45555543
No 234
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.17 E-value=4.5 Score=34.70 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=38.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhC-CCCeEeecCCCChhhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLK-GKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~R~~i 195 (197)
.++++|+-++++.-+..+++.|++. |.++..+||+++..+|.++
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHH
Confidence 3568999999999999999999875 7789999999999988654
No 235
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=82.01 E-value=4.7 Score=29.82 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=44.0
Q ss_pred CCCccEEEeehhhhhhcCCC--HHHHHHHHhhccCCceEEEEeecCChhHHHHHHHh
Q psy7789 56 LDVCRYLCLDEADRMVDMGF--EEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSA 110 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 110 (197)
-...++||+||+-..++.++ .+.+..+++.-|...-+|+..-..|+++.+.+...
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 36788999999998888774 55788888888888888888888888877766443
No 236
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=81.97 E-value=4.8 Score=28.23 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=31.2
Q ss_pred CCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.+++|+|.+-..+...+..|+..|+ ++..+.||+..
T Consensus 50 ~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~a 86 (145)
T cd01535 50 ERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAA 86 (145)
T ss_pred CCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHH
Confidence 5799999998888888999999988 79999998754
No 237
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.87 E-value=3.1 Score=31.70 Aligned_cols=88 Identities=8% Similarity=0.117 Sum_probs=45.1
Q ss_pred eeEEEEEcCCC--hHHhHHHH-----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHHh
Q psy7789 13 LRTCLAIGGVP--MNQSLDVI-----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIFS 84 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~~~l-----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~ 84 (197)
.....++|... ...-...+ ..+..+...+.+........-.-.+...+++++||+|.+... .....+..++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n 124 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYN 124 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHH
Confidence 35667777643 33222222 235667776665533222111112345679999999998643 23445555555
Q ss_pred hccC-C-ceEEEEeecCCh
Q psy7789 85 FFRG-Q-RQTLLFSATMPK 101 (197)
Q Consensus 85 ~~~~-~-~q~i~~SAT~~~ 101 (197)
.... . .++++ |++.++
T Consensus 125 ~~~e~g~~~li~-ts~~~p 142 (235)
T PRK08084 125 RILESGRTRLLI-TGDRPP 142 (235)
T ss_pred HHHHcCCCeEEE-eCCCCh
Confidence 5433 2 34554 555443
No 238
>PRK04296 thymidine kinase; Provisional
Probab=81.55 E-value=4.6 Score=29.67 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=31.6
Q ss_pred EeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecC
Q psy7789 39 VATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 39 i~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
+..+..++..+.. .-.+.++||+||++.+- .+++..+++.+.+....+++++--
T Consensus 62 ~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 62 VSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred eCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 4455555555543 23577899999997641 344666666654444455554443
No 239
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=81.43 E-value=5.3 Score=29.20 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=42.7
Q ss_pred CCCccEEEeehhhhhhcCCC--HHHHHHHHhhccCCceEEEEeecCChhHHHHH
Q psy7789 56 LDVCRYLCLDEADRMVDMGF--EEDVRTIFSFFRGQRQTLLFSATMPKKIQNFA 107 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 107 (197)
-...+++|+||+-..++.++ .+.+..+++.-|+..-+|+..-..|+++.+.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 36789999999998888774 45788888888888889998888888877755
No 240
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=81.31 E-value=3.1 Score=27.28 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=32.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~ 190 (197)
..+++++|.+-.++...+..|+..|+. +..+.|++..=
T Consensus 58 ~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w 96 (108)
T PRK00162 58 DTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAW 96 (108)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHH
Confidence 457999999988999999999999985 88888988653
No 241
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.17 E-value=2.3 Score=37.59 Aligned_cols=41 Identities=7% Similarity=0.038 Sum_probs=25.4
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
..+.+.+||||+|.|.... .+.+.+.++.-+....+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~A-aNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA-FNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHH-HHHHHHhhccCCCCceEEEEeC
Confidence 4678899999999995532 2333444444444555666543
No 242
>PRK06526 transposase; Provisional
Probab=81.03 E-value=7.1 Score=30.24 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=39.6
Q ss_pred hcCCcEEEeCchHHHHHHhc----CC-----ccCCCccEEEeehhhhhhcCC-CHHHHHHHHhhccCCceEEEEeecC
Q psy7789 32 KKGCHMMVATPGRLMDMLDK----KM-----VSLDVCRYLCLDEADRMVDMG-FEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~----~~-----~~l~~l~~vViDEad~l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
..|..+++.|...+...+.. +. ..+...+++|+||+|.+.... -...+..++...-....+++.|..-
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 45788888888777765531 11 135678899999999874321 1223444443322234466655553
No 243
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.98 E-value=6 Score=32.88 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=59.5
Q ss_pred CeeEEEEEcCCC--hHHhHHHHh-----c--CCcEEEeCchHHHHHHhc-----C----CccCCCccEEEeehhhhhhcC
Q psy7789 12 PLRTCLAIGGVP--MNQSLDVIK-----K--GCHMMVATPGRLMDMLDK-----K----MVSLDVCRYLCLDEADRMVDM 73 (197)
Q Consensus 12 ~i~~~~~~gg~~--~~~~~~~l~-----~--~~~Ili~TP~~l~~~l~~-----~----~~~l~~l~~vViDEad~l~~~ 73 (197)
.-++..++||.. ...-...+. . ++.++..|.+.+..-+-. + .-.. ++++++||+++.+...
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk 190 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGK 190 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCC
Confidence 467889999975 333333332 2 358899999887643321 1 1124 7999999999998764
Q ss_pred -CCHHHHHHHHhhccC-CceEEEEeecCChhHH
Q psy7789 74 -GFEEDVRTIFSFFRG-QRQTLLFSATMPKKIQ 104 (197)
Q Consensus 74 -~~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~~ 104 (197)
...+.+-.++..+.. +.|+++.|...|.++.
T Consensus 191 ~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 191 ERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 345556666666654 4488888877776544
No 244
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=80.97 E-value=6.7 Score=34.63 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=40.5
Q ss_pred CCeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l 70 (197)
.++++..++|+.+..++.+.+ . +..+|+|||. .+. ..+++.+++++|+..++.+
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie-~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIE-VGVDVPNATVMVIEDAERF 538 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eee-cCcccCCCcEEEEeCCCcC
Confidence 478999999998765554433 3 3589999994 443 4567889999999888874
No 245
>PRK10689 transcription-repair coupling factor; Provisional
Probab=80.55 E-value=3.5 Score=38.99 Aligned_cols=53 Identities=13% Similarity=0.313 Sum_probs=40.9
Q ss_pred CeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l 70 (197)
++++..++|+.+.++..+.+. +..+|+||| +.+. ..+++.+++++|++.+|.+
T Consensus 835 ~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIie-rGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIE-TGIDIPTANTIIIERADHF 891 (1147)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhh-cccccccCCEEEEecCCCC
Confidence 688999999988665544432 469999999 4554 4567899999999999875
No 246
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=79.80 E-value=13 Score=33.92 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhCCCCe
Q psy7789 151 KTEPPVLIFAEKKQDVDAIHEYLLLKGKPF 180 (197)
Q Consensus 151 ~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~ 180 (197)
..+++++|+++|.+..+.+++.|....+.+
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~ 674 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH 674 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE
Confidence 456799999999999999999998765554
No 247
>PRK06620 hypothetical protein; Validated
Probab=79.73 E-value=12 Score=28.19 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=40.0
Q ss_pred eEEEEEcCCC--hHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-Cc
Q psy7789 14 RTCLAIGGVP--MNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-QR 90 (197)
Q Consensus 14 ~~~~~~gg~~--~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-~~ 90 (197)
+...++|... ...-...+.+.+...+.+...... . .....+.+++||+|.+- ...+-.++..+.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~----~--~~~~~d~lliDdi~~~~----~~~lf~l~N~~~e~g~ 114 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE----E--ILEKYNAFIIEDIENWQ----EPALLHIFNIINEKQK 114 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch----h--HHhcCCEEEEeccccch----HHHHHHHHHHHHhcCC
Confidence 4467777643 444445555444444443222111 0 12455789999999642 2344455555544 34
Q ss_pred eEEEEeecCCh
Q psy7789 91 QTLLFSATMPK 101 (197)
Q Consensus 91 q~i~~SAT~~~ 101 (197)
|+++.|.|.++
T Consensus 115 ~ilits~~~p~ 125 (214)
T PRK06620 115 YLLLTSSDKSR 125 (214)
T ss_pred EEEEEcCCCcc
Confidence 55555555544
No 248
>PLN02160 thiosulfate sulfurtransferase
Probab=79.69 E-value=2.7 Score=29.11 Aligned_cols=38 Identities=8% Similarity=-0.125 Sum_probs=32.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~ 190 (197)
..++++||.+=.++...+..|...|+ ++..+.|++..=
T Consensus 81 ~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W 119 (136)
T PLN02160 81 ADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAW 119 (136)
T ss_pred CCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHH
Confidence 45899999999999999999999998 478888987653
No 249
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=79.59 E-value=9.2 Score=28.27 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=44.0
Q ss_pred CCccEEEeehhhhhhcCCC--HHHHHHHHhhccCCceEEEEeecCChhHHHHHHHh
Q psy7789 57 DVCRYLCLDEADRMVDMGF--EEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSA 110 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 110 (197)
...++||+||.-..+..++ .+.+..+++.-|....+|+..-..++++.+.+...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 4688999999998888764 45788888888888889998888898888876554
No 250
>KOG0989|consensus
Probab=79.56 E-value=2.3 Score=33.90 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecC
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
..-.+.+|+||||.|-.. -...+++.+...+....+++...-+
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 345589999999998553 4456667777777777777765554
No 251
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=79.55 E-value=2.6 Score=33.40 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=28.0
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
..-+.+|+||+|.+........+..++...+...++++.+.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 46789999999988333344566666777666666666543
No 252
>KOG2170|consensus
Probab=79.39 E-value=3.2 Score=33.02 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=40.2
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-------CceEEEEeecCChhHHHHHHHhcC
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-------QRQTLLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-------~~q~i~~SAT~~~~~~~~~~~~~~ 112 (197)
-+.=.++|+||+|.|-. +..+.+.-.+.+.|. .+-+|++|.+-..++..++-.+.+
T Consensus 176 ~C~rslFIFDE~DKmp~-gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 176 ACQRSLFIFDEVDKLPP-GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred hcCCceEEechhhhcCH-hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 46667999999999843 366667777776642 346789998888777776655554
No 253
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=79.32 E-value=7 Score=28.39 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCCccEEEeehhhhhhcCCC--HHHHHHHHhhccCCceEEEEeecCChhHHHHHH
Q psy7789 56 LDVCRYLCLDEADRMVDMGF--EEDVRTIFSFFRGQRQTLLFSATMPKKIQNFAR 108 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 108 (197)
-...++||+||+-..++.++ .+.+..+++.-|...-+|+..-..|+++.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 46789999999998888774 457888888888888899988888888777663
No 254
>PRK14974 cell division protein FtsY; Provisional
Probab=79.12 E-value=7.6 Score=31.46 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=41.4
Q ss_pred CCccEEEeehhhhhhc-CCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhc
Q psy7789 57 DVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSAL 111 (197)
Q Consensus 57 ~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 111 (197)
...++|+||.+.++.. ..+...++.+.+...++.-+++++||...+....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 4567999999998863 345667777777776777788999998777776666664
No 255
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.93 E-value=3 Score=39.52 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=55.5
Q ss_pred HhcCCcEEEeCchHHHHHHh---cC------------CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 31 IKKGCHMMVATPGRLMDMLD---KK------------MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 31 l~~~~~Ili~TP~~l~~~l~---~~------------~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
+..|..|.+..|++=...+. .+ .+..+-.-+.|+||+|.-+|......+..+++....+.|+|+.
T Consensus 1046 l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvI 1125 (1163)
T COG1196 1046 LTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVI 1125 (1163)
T ss_pred hhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEE
Confidence 55677888888877654221 11 1124455699999999999987777888888888899999999
Q ss_pred eecCChhHHHHHHHhc
Q psy7789 96 SATMPKKIQNFARSAL 111 (197)
Q Consensus 96 SAT~~~~~~~~~~~~~ 111 (197)
|-- +.+...+..++
T Consensus 1126 Thr--~~~m~~ad~l~ 1139 (1163)
T COG1196 1126 THR--KGTMEAADRLV 1139 (1163)
T ss_pred EcC--hHHHHHHHHHe
Confidence 754 44555555544
No 256
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=78.89 E-value=3.2 Score=37.80 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=26.2
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
.+.+.+||||+|.|-.. ..+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 67789999999999653 3344555556655555666554
No 257
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=78.52 E-value=3.1 Score=27.03 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=28.6
Q ss_pred CCEEEEecccccHHHHHHH-----HHhCCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEY-----LLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~-----L~~~~~-~~~~~h~~~~~ 189 (197)
.++++||++-..+...+.. |.+.|+ ++..+.||+..
T Consensus 68 ~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 68 KDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred ccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 4689999777777777666 888898 89999998764
No 258
>PRK08116 hypothetical protein; Validated
Probab=78.05 E-value=13 Score=28.92 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=46.5
Q ss_pred EEEEEcCCC--hHHhHHH-----HhcCCcEEEeCchHHHHHHhcC-----------Cc-cCCCccEEEeehhhhh--hcC
Q psy7789 15 TCLAIGGVP--MNQSLDV-----IKKGCHMMVATPGRLMDMLDKK-----------MV-SLDVCRYLCLDEADRM--VDM 73 (197)
Q Consensus 15 ~~~~~gg~~--~~~~~~~-----l~~~~~Ili~TP~~l~~~l~~~-----------~~-~l~~l~~vViDEad~l--~~~ 73 (197)
..+++|+.. ....... +..+..+++.+...++..+... .+ .+.+.++|||||++.- -+|
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~ 195 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEW 195 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHH
Confidence 356777642 3322222 2246777777766655554211 01 2678899999999643 222
Q ss_pred CCHHHHHHHHhhc-cCCceEEEEeecCChhH
Q psy7789 74 GFEEDVRTIFSFF-RGQRQTLLFSATMPKKI 103 (197)
Q Consensus 74 ~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~ 103 (197)
....+-.|+... .....+|+.|..-+.++
T Consensus 196 -~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 196 -AREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred -HHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 334455555543 33455666655444443
No 259
>PRK01415 hypothetical protein; Validated
Probab=78.04 E-value=3 Score=32.19 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=33.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~ 191 (197)
.+++++||.+=.+|+..+..|++.|++ ++.+.||+..-.
T Consensus 171 ~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~ 210 (247)
T PRK01415 171 GKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYL 210 (247)
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHH
Confidence 457999999999999999999999995 888999876544
No 260
>PRK05320 rhodanese superfamily protein; Provisional
Probab=77.52 E-value=3.5 Score=31.98 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=34.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~ 191 (197)
.+++++||.+=.+|+..+..|++.|++ +..+.||+..-.
T Consensus 175 dk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~ 214 (257)
T PRK05320 175 GKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYF 214 (257)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHH
Confidence 457999999999999999999999994 889999986643
No 261
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.49 E-value=40 Score=27.97 Aligned_cols=96 Identities=7% Similarity=0.029 Sum_probs=55.1
Q ss_pred CCeeEEEEEcCCC---hHHhHHHHhc--CCcEE-EeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC-CHHHHHHHH
Q psy7789 11 IPLRTCLAIGGVP---MNQSLDVIKK--GCHMM-VATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG-FEEDVRTIF 83 (197)
Q Consensus 11 ~~i~~~~~~gg~~---~~~~~~~l~~--~~~Il-i~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~-~~~~i~~i~ 83 (197)
.|.+|++++.+.. ...|...+.+ +.++. +.++..+...+. .+.+.++|+||++.+..... ....+..++
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l 280 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELL 280 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHH
Confidence 3667877777753 2233333333 33433 334555544443 24678999999999885431 233445555
Q ss_pred hhccCC-ceEEEEeecCChh-HHHHHHHh
Q psy7789 84 SFFRGQ-RQTLLFSATMPKK-IQNFARSA 110 (197)
Q Consensus 84 ~~~~~~-~q~i~~SAT~~~~-~~~~~~~~ 110 (197)
...... -.++++|||.... +.+....+
T Consensus 281 ~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 281 NACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred HhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 544333 3567899998643 55555665
No 262
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=77.49 E-value=5.8 Score=26.50 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.6
Q ss_pred hhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHH
Q psy7789 139 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL 173 (197)
Q Consensus 139 ~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L 173 (197)
.+....+.+.+...++|+++||.|-.++-.|..+-
T Consensus 72 ~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 72 EEDVEAFADALESLPKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHHH
Confidence 45677888888888889999999988888777653
No 263
>PLN03025 replication factor C subunit; Provisional
Probab=77.47 E-value=3.7 Score=32.78 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=25.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
...+.+++||+|.+... ....+..+++..++...+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEEe
Confidence 45789999999998643 3445556666655555555443
No 264
>PRK09087 hypothetical protein; Validated
Probab=77.29 E-value=14 Score=28.03 Aligned_cols=82 Identities=10% Similarity=0.085 Sum_probs=41.8
Q ss_pred eEEEEEcCCC--hHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 14 RTCLAIGGVP--MNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 14 ~~~~~~gg~~--~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
+...++|... ...-...+.......+-+++.+..-+... +.. +++++|++|.+.. ....+-.++..+.....
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~---~~~-~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~ 118 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANA---AAE-GPVLIEDIDAGGF--DETGLFHLINSVRQAGT 118 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHh---hhc-CeEEEECCCCCCC--CHHHHHHHHHHHHhCCC
Confidence 3456777632 44444445444444455553222211110 111 5899999998732 35556667766655444
Q ss_pred EEEEeecCCh
Q psy7789 92 TLLFSATMPK 101 (197)
Q Consensus 92 ~i~~SAT~~~ 101 (197)
.++++++.++
T Consensus 119 ~ilits~~~p 128 (226)
T PRK09087 119 SLLMTSRLWP 128 (226)
T ss_pred eEEEECCCCh
Confidence 4555555433
No 265
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=77.23 E-value=20 Score=30.21 Aligned_cols=94 Identities=17% Similarity=0.312 Sum_probs=51.2
Q ss_pred eeEEEEEcCCC--hHHhHHHH-----hc--CCcEEEeCchHHHHHHh----cCCc-c----C-CCccEEEeehhhhhhcC
Q psy7789 13 LRTCLAIGGVP--MNQSLDVI-----KK--GCHMMVATPGRLMDMLD----KKMV-S----L-DVCRYLCLDEADRMVDM 73 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~~~l-----~~--~~~Ili~TP~~l~~~l~----~~~~-~----l-~~l~~vViDEad~l~~~ 73 (197)
.+...++|+.. ...-...+ .. +..++..|.+.+..-+. .+.. . . ...+++++||+|.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 56788998854 33322222 11 46788888887664432 1111 0 1 25889999999988654
Q ss_pred C-CHHHHHHHHhhcc-CCceEEEEeecCChhHHHH
Q psy7789 74 G-FEEDVRTIFSFFR-GQRQTLLFSATMPKKIQNF 106 (197)
Q Consensus 74 ~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~ 106 (197)
. ....+..++..+. ...|+++.|..-+.+...+
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 2 2334444444443 3445555554444444443
No 266
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=76.79 E-value=3.9 Score=27.62 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=29.6
Q ss_pred CCCEEEEec-ccccHHHHHHHHHhC------------CC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAE-KKQDVDAIHEYLLLK------------GK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~-s~~~~~~l~~~L~~~------------~~-~~~~~h~~~~~ 189 (197)
..++++||. +-.++...+..|+.. |+ ++..+.||+..
T Consensus 68 ~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~ 118 (121)
T cd01530 68 RRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKN 118 (121)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHh
Confidence 347999996 888888889898874 65 78999998753
No 267
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.66 E-value=1.8 Score=38.61 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.1
Q ss_pred cCCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~~ 72 (197)
..+||||+.=..|++.-.+.. .++++ ..|||||||-+.+
T Consensus 194 ~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 194 PFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred hcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 358999999776665443322 23444 6899999999964
No 268
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=76.57 E-value=5.5 Score=36.85 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=40.7
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l 70 (197)
++++..++|+.+..+..+.+ . +..+|+||| +.+. .-+++.+++++|++.++.+
T Consensus 686 ~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~iie-~GIDIp~v~~VIi~~a~~~ 742 (926)
T TIGR00580 686 EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----TIIE-TGIDIPNANTIIIERADKF 742 (926)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cccccccCCEEEEecCCCC
Confidence 78999999998765554433 2 459999999 4444 4557889999999999875
No 269
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=76.53 E-value=9.8 Score=31.57 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=35.7
Q ss_pred CCcEEEeCchH-------HHHHHh---cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChh
Q psy7789 34 GCHMMVATPGR-------LMDMLD---KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKK 102 (197)
Q Consensus 34 ~~~Ili~TP~~-------l~~~l~---~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 102 (197)
.||+.+.+|+. +..++. ... .....+.++|||+|.+... ....+.+.++.-|+... +++.||-+..
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p-~~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~-fIL~a~~~~~ 159 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRP-STGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTV-WLLCAPSPED 159 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCc-ccCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCe-EEEEECChHH
Confidence 37888777752 222222 222 2367789999999999543 22334444444333444 4444443333
No 270
>PRK10536 hypothetical protein; Provisional
Probab=75.82 E-value=4.9 Score=31.27 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=28.6
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
.+||+|||..+ -..++..++.++..+.++++..-.
T Consensus 178 ~~vIvDEaqn~----~~~~~k~~ltR~g~~sk~v~~GD~ 212 (262)
T PRK10536 178 AVVILDEAQNV----TAAQMKMFLTRLGENVTVIVNGDI 212 (262)
T ss_pred CEEEEechhcC----CHHHHHHHHhhcCCCCEEEEeCCh
Confidence 69999999987 457888999999888888876543
No 271
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=75.42 E-value=20 Score=31.09 Aligned_cols=91 Identities=14% Similarity=0.270 Sum_probs=64.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCH----HHHHHH
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFE----EDVRTI 82 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~----~~i~~i 82 (197)
.|+++..++++..--+..+.+. +..||+||- .+++ ..+++-.+.+|.|=+||.= ||. ..++-|
T Consensus 469 ~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR-EGLDiPEVsLVAIlDADKe---GFLRse~SLIQtI 539 (663)
T COG0556 469 LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEVSLVAILDADKE---GFLRSERSLIQTI 539 (663)
T ss_pred cCceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh-ccCCCcceeEEEEeecCcc---ccccccchHHHHH
Confidence 5899999999987655555443 359999997 5555 5678899999999889864 443 334444
Q ss_pred Hhhcc-CCceEEEEeecCChhHHHHHHHh
Q psy7789 83 FSFFR-GQRQTLLFSATMPKKIQNFARSA 110 (197)
Q Consensus 83 ~~~~~-~~~q~i~~SAT~~~~~~~~~~~~ 110 (197)
-+.-+ .+.++|+..-.+++.++..+...
T Consensus 540 GRAARN~~GkvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 540 GRAARNVNGKVILYADKITDSMQKAIDET 568 (663)
T ss_pred HHHhhccCCeEEEEchhhhHHHHHHHHHH
Confidence 33333 35689999888887777655443
No 272
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.28 E-value=6.7 Score=28.97 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-CceEEEEeecC
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-QRQTLLFSATM 99 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-~~q~i~~SAT~ 99 (197)
+...+++|||||-.+ -...+..++...+. ..+++++.-+.
T Consensus 91 ~~~~~vliVDEasmv----~~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 91 LPKKDVLIVDEASMV----DSRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp -TSTSEEEESSGGG-----BHHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred CCcccEEEEeccccc----CHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 455689999999987 45567778887766 67888887664
No 273
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=75.08 E-value=7.5 Score=35.06 Aligned_cols=43 Identities=12% Similarity=-0.056 Sum_probs=36.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhC---CCCeEeecCCCChhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK---GKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~R~~i 195 (197)
+.++|+.++|++=+....+.+++. ++++..++|+.+.++|+.+
T Consensus 81 ~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i 126 (742)
T TIGR03817 81 RATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA 126 (742)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH
Confidence 457999999999999999888765 5788999999999888654
No 274
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.97 E-value=4.6 Score=34.66 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=24.8
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
.+.+.+||||+|.|.... ...+.+.+..-|+...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 567899999999985532 334444555555555555543
No 275
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=74.69 E-value=11 Score=33.13 Aligned_cols=40 Identities=5% Similarity=-0.042 Sum_probs=25.0
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
+...+.+||||+|.+... ..+.+.+.+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 467889999999998543 2333444444445555566554
No 276
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=74.64 E-value=5.1 Score=28.70 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=30.0
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 152 TEPPVLIFAEKKQ-DVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 152 ~~~~~lIF~~s~~-~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
...++++||.+-. .+...+..|+..|++ +..+.||+..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~a 154 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDG 154 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHH
Confidence 3457999998753 677788888999985 8888998864
No 277
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.02 E-value=6.3 Score=32.12 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=31.5
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
.++++||++-.++...+..|+..|++ +..+.||+..
T Consensus 315 ~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 315 DEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 47999999988999999999999995 7889999854
No 278
>KOG1001|consensus
Probab=73.95 E-value=6.5 Score=34.96 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCcEEEeCchHHHH-HHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecC
Q psy7789 34 GCHMMVATPGRLMD-MLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 34 ~~~Ili~TP~~l~~-~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
.+||+++|++.+.. .+.+ -..-.+|+||||.+-+.... .....-.+. .....++++|-
T Consensus 234 ~~dVVltTy~il~~~~l~~-----i~w~Riildea~~ikn~~tq--~~~a~~~L~-a~~RWcLtgtP 292 (674)
T KOG1001|consen 234 SYDVVLTTYDILKNSPLVK-----IKWLRIVLDEAHTIKNKDTQ--IFKAVCQLD-AKYRWCLTGTP 292 (674)
T ss_pred CCceEEeeHHHhhcccccc-----eeEEEEEeccccccCCcchH--hhhhheeec-cceeeeecCCh
Confidence 48899999977763 2222 23347899999999765333 222222222 33345566664
No 279
>KOG0990|consensus
Probab=73.79 E-value=3.9 Score=32.81 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
...+++|+||||.+-.. ....++.++..+..+..+++.+
T Consensus 130 ~~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii~ 168 (360)
T KOG0990|consen 130 AAFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATIS 168 (360)
T ss_pred CceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEec
Confidence 37899999999998543 4566777777777777766544
No 280
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=73.25 E-value=12 Score=22.37 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=25.9
Q ss_pred EEEEe-cccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 156 VLIFA-EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 156 ~lIF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
+.+|. ++.-.|.....+|++.|++...+.-...++.+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~ 41 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREE 41 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 45565 5567777778888888777776666655555444
No 281
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=73.21 E-value=16 Score=27.41 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=46.4
Q ss_pred eEEEEEcCCC--hHHhHHHH-----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 14 RTCLAIGGVP--MNQSLDVI-----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 14 ~~~~~~gg~~--~~~~~~~l-----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
+...++|... ...-...+ ..+..+++.+...+...+. .....+++++||+|.+-.+ ....+..++...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~liiDdi~~l~~~-~~~~L~~~~~~~ 117 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFD----FDPEAELYAVDDVERLDDA-QQIALFNLFNRV 117 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHh----hcccCCEEEEeChhhcCch-HHHHHHHHHHHH
Confidence 4566777643 33222222 2455677777655544321 1345678999999987433 344555555554
Q ss_pred cCCce-EEEEeecCCh
Q psy7789 87 RGQRQ-TLLFSATMPK 101 (197)
Q Consensus 87 ~~~~q-~i~~SAT~~~ 101 (197)
..... +++++++.++
T Consensus 118 ~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 118 RAHGQGALLVAGPAAP 133 (227)
T ss_pred HHcCCcEEEEeCCCCH
Confidence 44444 4677777543
No 282
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=73.14 E-value=5.3 Score=34.96 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=30.4
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
..+++||||||-++ -...+..+++.+++..++|++.-.
T Consensus 258 l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 258 LPLDVLVVDEASMV----DLPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred CcccEEEEcccccC----CHHHHHHHHHhcCCCCEEEEECCh
Confidence 35789999999887 355677888889889999887655
No 283
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=72.85 E-value=3.4 Score=38.30 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCeeEEEEEc-CCChHHhHHHHhcCCcEEEeCchHHH-HHHhcC------CccCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIG-GVPMNQSLDVIKKGCHMMVATPGRLM-DMLDKK------MVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~g-g~~~~~~~~~l~~~~~Ili~TP~~l~-~~l~~~------~~~l~~l~~vViDEad~l~ 71 (197)
+|++|.++.. +.+.....+ .- .+||..+|..-+- ++++.. ..-.+.+.|.||||+|.++
T Consensus 237 LGLsvg~i~~~~~~~~~rr~-aY-~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 237 HGLSVDCIDKHQPNSEARRK-AY-NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred hCCceeecCCCCCCHHHHHH-hC-CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 3788887765 333333322 22 3899999986543 333321 1124678899999999875
No 284
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=72.85 E-value=5 Score=29.96 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=26.5
Q ss_pred CCCccEEEeehhhhhhcCC-CHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 56 LDVCRYLCLDEADRMVDMG-FEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
+...++++|||+|.+.... ....+..++.........++++++.+
T Consensus 88 ~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 3455799999999986431 24555566555433323455555544
No 285
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.79 E-value=19 Score=26.89 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=38.8
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
+....+...+...-.++-||+|. ..+.+.+.+...+..+.-+||+.+++.-++
T Consensus 40 ~~a~~i~~~~~~~~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~~~~ 92 (207)
T PRK13958 40 TQIKKLASAVPNHIDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDFIQE 92 (207)
T ss_pred HHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHHHHH
Confidence 44555555555444578999875 677788888888999999999988776443
No 286
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=72.78 E-value=39 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++++..+.+..|||++...+..+...|++.|++
T Consensus 165 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 202 (268)
T cd06270 165 YAAMQELLARGAPFTAVFCANDEMAAGAISALREHGIS 202 (268)
T ss_pred HHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34555666665557899999999999999999988764
No 287
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=72.61 E-value=15 Score=29.37 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=25.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
..-+.+|||+||.|... ....+.+++..-| +..+++++.
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 67899999999998543 3344555555545 565555544
No 288
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=72.48 E-value=6.1 Score=28.85 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=22.2
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
..+++|||||-.+ =.+.+..+++ ....++||.|+.
T Consensus 90 ~~DlliVDEAAaI----p~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 90 QADLLIVDEAAAI----PLPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp --SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred CCCEEEEechhcC----CHHHHHHHHh----hCCEEEEEeecc
Confidence 3479999999887 2344445433 333678888875
No 289
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=72.31 E-value=5.6 Score=35.70 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=29.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
...++||+|||+.+. ...+..+++.++...+++++.-+
T Consensus 415 ~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECcc
Confidence 357899999999983 44566777888888898887655
No 290
>PRK08181 transposase; Validated
Probab=71.53 E-value=24 Score=27.61 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=39.4
Q ss_pred hcCCcEEEeCchHHHHHHhc----CC-----ccCCCccEEEeehhhhhhcCCC-HHHHHHHHhhccCCceEEEEeecCC
Q psy7789 32 KKGCHMMVATPGRLMDMLDK----KM-----VSLDVCRYLCLDEADRMVDMGF-EEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~----~~-----~~l~~l~~vViDEad~l~~~~~-~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
..+..+++.|...|...+.. .. -.+.+.+++|+||.+....... ...+-.++...-....++ +++-.+
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I-iTSN~~ 209 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL-ITANQP 209 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE-EEcCCC
Confidence 45788888887777765532 11 1257889999999998754322 233445544432333444 444444
No 291
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=71.44 E-value=5.3 Score=29.09 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=22.9
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
...-+.+||||+|.+... ..+.+...++.-++..-+++.
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 467789999999998543 233344444443333444443
No 292
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=71.28 E-value=51 Score=29.43 Aligned_cols=94 Identities=9% Similarity=0.175 Sum_probs=56.6
Q ss_pred CCeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.|+++..++|+.+..++.+.+ . +..+|+||| ..+. ..+++.+++++|+-|++...-......+-..+.+.
T Consensus 465 ~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRa 538 (655)
T TIGR00631 465 LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA 538 (655)
T ss_pred hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCC
Confidence 378888898987755444333 2 458999999 4444 55678999999999988863322222222222222
Q ss_pred c--CCceEEEEeecCChhHHHHHHHh
Q psy7789 87 R--GQRQTLLFSATMPKKIQNFARSA 110 (197)
Q Consensus 87 ~--~~~q~i~~SAT~~~~~~~~~~~~ 110 (197)
. .....+++-...+..+...+...
T Consensus 539 gR~~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 539 ARNVNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCCCCCEEEEEEcCCCHHHHHHHHHH
Confidence 1 23456666666665555544443
No 293
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=71.12 E-value=41 Score=29.91 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=35.7
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC-CCCeEeecCCCC
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GKPFFTLKSLKE 188 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~ 188 (197)
....+.+++...+++++|-+.|.+..+.+++.|... .++ ..+.|+.+
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~ 505 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKN 505 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCc
Confidence 346667777778889999999999999999999765 344 44556553
No 294
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=71.00 E-value=7.9 Score=28.99 Aligned_cols=35 Identities=14% Similarity=0.354 Sum_probs=25.2
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
.+||+|||-.+ -..+++.++.++..+.+++++.-.
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 69999999876 678999999999999999988665
No 295
>KOG0333|consensus
Probab=70.93 E-value=10 Score=32.60 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHh---c-CCcEEEeCchHHHHHHhcCCccCCCccEEE
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK---K-GCHMMVATPGRLMDMLDKKMVSLDVCRYLC 63 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~---~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vV 63 (197)
.|++|++++||.+.+.....|. . ..+|+|||. ..- ..++..++.+||
T Consensus 540 ~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vAg-RGIDIpnVSlVi 590 (673)
T KOG0333|consen 540 AGYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VAG-RGIDIPNVSLVI 590 (673)
T ss_pred ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----ccc-cCCCCCccceee
Confidence 3799999999998877665553 3 589999993 333 445678888876
No 296
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=70.75 E-value=14 Score=22.09 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=26.4
Q ss_pred CEEEEe-cccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 155 PVLIFA-EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 155 ~~lIF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
++.+|. ++...|.....+|.+.|++...+.=...++.+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~e 42 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAE 42 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHH
Confidence 455666 5578888888888888887666654444444443
No 297
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=70.23 E-value=7 Score=34.40 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=30.2
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
..+++||||+.++ -...+..+++.+++..++|++.-.
T Consensus 265 ~~dvlIvDEaSMv----d~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 265 HLDVLVVDEASMV----DLPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCCeEEEChHhcc----cHHHHHHHHHhcccCCEEEEecch
Confidence 4589999999887 356677888899999999887655
No 298
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=70.03 E-value=13 Score=29.35 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=25.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
...++|++||+|.+... ....+..++...+....+++.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 45679999999988542 2345555666656666666654
No 299
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=69.99 E-value=12 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCCCEEEEeccc-ccHHHHHHHHHhCCCCeE
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKK-QDVDAIHEYLLLKGKPFF 181 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~-~~~~~l~~~L~~~~~~~~ 181 (197)
....++.++..+.++.+.+|+. ...+.+++.|+..|+++.
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 4556666777777888888775 555899999999998653
No 300
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=69.85 E-value=7.1 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCCCCeE-eecCCCCh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKGKPFF-TLKSLKED 189 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~-~~h~~~~~ 189 (197)
..++.+++|.+=.+....+..|++.|+... .+.|++..
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~ 98 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDA 98 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHH
Confidence 346899999999999999999999998776 67777654
No 301
>PRK12377 putative replication protein; Provisional
Probab=69.72 E-value=11 Score=29.22 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=44.7
Q ss_pred eeEEEEEcCC--ChHHhHH-----HHhcCCcEEEeCchHHHHHHhc----C------CccCCCccEEEeehhhhhhcCC-
Q psy7789 13 LRTCLAIGGV--PMNQSLD-----VIKKGCHMMVATPGRLMDMLDK----K------MVSLDVCRYLCLDEADRMVDMG- 74 (197)
Q Consensus 13 i~~~~~~gg~--~~~~~~~-----~l~~~~~Ili~TP~~l~~~l~~----~------~~~l~~l~~vViDEad~l~~~~- 74 (197)
....+++|.. ....-.. ....+..+++.|-..+...+.. . .-.+.+.++||+||+.......
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 3456677753 3333222 2234667776665556654432 1 1136899999999996653222
Q ss_pred CHHHHHHHHhhc-cCCceEEEEee
Q psy7789 75 FEEDVRTIFSFF-RGQRQTLLFSA 97 (197)
Q Consensus 75 ~~~~i~~i~~~~-~~~~q~i~~SA 97 (197)
..+.+..|+..- .+...+++.|-
T Consensus 181 ~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 181 EQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcC
Confidence 233344444333 33455666544
No 302
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=69.47 E-value=5 Score=30.59 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=26.1
Q ss_pred cCCcEEEeCchHHHHHHhc-------CCc-----------cCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDK-------KMV-----------SLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~-------~~~-----------~l~~l~~vViDEad~l~~ 72 (197)
..-.|+++||+.++++.-. +.. .+++-..=|+||+|..+.
T Consensus 129 ~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 129 RSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 3467999999999986311 110 133444568899988765
No 303
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=69.24 E-value=6.9 Score=34.88 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=35.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHh----CCCCeEeecCCCChhhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLL----KGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~R~~i 195 (197)
.+.+++|-++|+.=|+..++.+++ .|+++..+||+++..+|+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~ 356 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREI 356 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHH
Confidence 345899999999888877776654 47899999999998887665
No 304
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=69.02 E-value=4.6 Score=30.08 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=29.1
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhccC-CceEEEEee
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFFRG-QRQTLLFSA 97 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~~~-~~q~i~~SA 97 (197)
.++++||.+.-++......+..++..+.+ +.|+++.|-
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 78999999998877666666666666655 789987664
No 305
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=68.58 E-value=7.5 Score=31.14 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=33.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~ 191 (197)
.+++++||.+=.++...+.+|++.|+ ++..+.||+..-.
T Consensus 171 dk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~ 210 (314)
T PRK00142 171 DKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYG 210 (314)
T ss_pred cCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHH
Confidence 35799999999999999999999999 4899999986543
No 306
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=68.49 E-value=54 Score=25.49 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=63.6
Q ss_pred hhhhhcC--CCHHHHHHHHhhccCCceEEEEeecCChhHHHHHH----H-hcCCCeEEEeCCCC--ccCcceeEEEEEcC
Q psy7789 67 ADRMVDM--GFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFAR----S-ALVKPITINVGRAG--AASMNVVQEVEYVK 137 (197)
Q Consensus 67 ad~l~~~--~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~----~-~~~~~~~i~~~~~~--~~~~~i~~~~~~~~ 137 (197)
.+.+++- |.+..-..+.....+..+++.+= ...+-.+.+. . .+.+.+.+...+.. .....+...+..++
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE--~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp 172 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYE--IREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLP 172 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEE--ecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCC
Confidence 3344443 34544555555565555655443 2233222222 2 34455665554433 22235666666666
Q ss_pred chhh-HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC
Q psy7789 138 QEAK-IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK 178 (197)
Q Consensus 138 ~~~k-~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~ 178 (197)
+++. +..+.+.|+.. +.+.+|+++.+.++++.+.|++.|+
T Consensus 173 ~PW~~le~~~~~Lkpg-g~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 173 DPWNVLEHVSDALKPG-GVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ChHHHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 6654 35555555544 7899999999999999999999864
No 307
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=68.39 E-value=19 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=31.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R~ 193 (197)
+++++|.++++.-+...++.++.. +.++..++|+.+..++.
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQI 113 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH
Confidence 457999999998888887766544 67888899988876543
No 308
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=68.33 E-value=16 Score=25.26 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=30.9
Q ss_pred hHHHHHHHhhcC-CCCEEEEecc---cccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 141 KIVYLLECLQKT-EPPVLIFAEK---KQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 141 k~~~l~~~l~~~-~~~~lIF~~s---~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
.+..++.-+.-. ..++|+||++ -..+-.++-.|+..|++ +..+.|+++.
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~ 135 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFE 135 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHH
Confidence 444444333322 3579999986 34455666677888874 7888888753
No 309
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.18 E-value=7.9 Score=25.81 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=12.9
Q ss_pred ccEEEeehhhhhhcC
Q psy7789 59 CRYLCLDEADRMVDM 73 (197)
Q Consensus 59 l~~vViDEad~l~~~ 73 (197)
-..+++||+|.+...
T Consensus 59 ~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPK 73 (132)
T ss_dssp SEEEEEETGGGTSHH
T ss_pred ceeeeeccchhcccc
Confidence 579999999999764
No 310
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=68.09 E-value=10 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=26.4
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
....+.+||||||.|... ..+.+.+.++.-+....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 367789999999999543 3344555566545555566664
No 311
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=67.85 E-value=4.7 Score=35.71 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=29.2
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhc-cCCceEEEEeecCChh
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFF-RGQRQTLLFSATMPKK 102 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~ 102 (197)
.+.+++|+|||+-+-. +.+..++-.+ ..++++|++|+|-+.+
T Consensus 351 qtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns~~ 393 (738)
T PHA03368 351 QDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNTGK 393 (738)
T ss_pred CcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCCCc
Confidence 4688999999998844 3344444332 2488999999997643
No 312
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.53 E-value=44 Score=27.17 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=57.3
Q ss_pred CCceEEEEeecCChh--HHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEe----c
Q psy7789 88 GQRQTLLFSATMPKK--IQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFA----E 161 (197)
Q Consensus 88 ~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~----~ 161 (197)
.-..++++|+|+... +......+.++..++..+.-.. ... .+.++.....+-..+++. ||. .
T Consensus 112 ~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~-----dTk--~id~~~p~~alTkavKkr-----iYlgs~~~ 179 (431)
T COG4408 112 QVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYA-----DTK--YIDAEQPNRALTKAVKKR-----IYLGSQHG 179 (431)
T ss_pred cccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcc-----cce--eecccCcchHHHHHHhHh-----eeeccCCC
Confidence 445789999999866 5556666666766665542221 111 223334444454444432 222 2
Q ss_pred ccccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 162 KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 162 s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
+...|+.+...|...|+++.+.-+-+..+.|.
T Consensus 180 ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrn 211 (431)
T COG4408 180 NSGSAEMLTAVLAQHGIDVEPCESPLAAETRN 211 (431)
T ss_pred CChHHHHHHHHHHhcCCceEEcCChhhhhhcc
Confidence 45778889999999999888877766655553
No 313
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=67.50 E-value=21 Score=26.59 Aligned_cols=70 Identities=6% Similarity=0.073 Sum_probs=41.6
Q ss_pred CeeEEEEEcCCChHHhHHHHh-----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHH
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIK-----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIF 83 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~-----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~ 83 (197)
|.++.+.....+.+-....+. .-+-++|-.+..+...+.....++. ++.|.||||.-+-. .....+..+.
T Consensus 32 g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~-~~v~~l~~la 106 (201)
T COG1435 32 GMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE-ELVYVLNELA 106 (201)
T ss_pred CCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH-HHHHHHHHHH
Confidence 667777777766554443332 1256777777777777764333322 88999999976532 2333444443
No 314
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=66.97 E-value=31 Score=22.63 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=23.4
Q ss_pred CCEEEEeccc-c----cHHHHHHHHHhCCC---CeEeecCCCC
Q psy7789 154 PPVLIFAEKK-Q----DVDAIHEYLLLKGK---PFFTLKSLKE 188 (197)
Q Consensus 154 ~~~lIF~~s~-~----~~~~l~~~L~~~~~---~~~~~h~~~~ 188 (197)
.++++||.+. . .+..+...|++.|+ ++..+-||+.
T Consensus 67 ~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 67 KLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 4688999752 2 34455556666775 6777888874
No 315
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=66.79 E-value=6.8 Score=28.78 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=26.2
Q ss_pred CccEEEeehhhhhhcCC-C-H---HHHHHHHhhccCCceEEEEeecCChhHHHHHHHhc
Q psy7789 58 VCRYLCLDEADRMVDMG-F-E---EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSAL 111 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~-~-~---~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 111 (197)
.=.++|+||||.++... . . +.+...+...++..--+++.+--+..+...++.+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 44699999999987542 2 1 22224444444444444444444455666555443
No 316
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.66 E-value=65 Score=27.13 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=56.6
Q ss_pred CCeeEEEEEcCCCh---HHhHHHHh--cCCcEE-EeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHH
Q psy7789 11 IPLRTCLAIGGVPM---NQSLDVIK--KGCHMM-VATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIF 83 (197)
Q Consensus 11 ~~i~~~~~~gg~~~---~~~~~~l~--~~~~Il-i~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~ 83 (197)
.|.+++++..+... .+|..... .++.+. ..+|..+...+..-.- -.+.++|+||-+=+.... .....+..++
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETM 346 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHH
Confidence 35677777766432 23333331 245555 5678777766642111 125789999999776543 1233444555
Q ss_pred hhccCCceEEEEeecCC-hhHHHHHHHhc
Q psy7789 84 SFFRGQRQTLLFSATMP-KKIQNFARSAL 111 (197)
Q Consensus 84 ~~~~~~~q~i~~SAT~~-~~~~~~~~~~~ 111 (197)
+...+..-++.+|||.. ..+.+.++.|-
T Consensus 347 k~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 347 GQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred hhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 44444444567888765 45677777664
No 317
>PRK04132 replication factor C small subunit; Provisional
Probab=66.42 E-value=12 Score=34.31 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=24.8
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
+.+.+|+||||.|-.. ....+..++...+....+++.
T Consensus 630 ~~KVvIIDEaD~Lt~~-AQnALLk~lEep~~~~~FILi 666 (846)
T PRK04132 630 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILS 666 (846)
T ss_pred CCEEEEEECcccCCHH-HHHHHHHHhhCCCCCeEEEEE
Confidence 4689999999999542 455566666665555555554
No 318
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.40 E-value=10 Score=33.77 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=23.8
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
...+.+||||+|.|... ....+.++++.-+....+|+.
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEE
Confidence 56789999999988543 233455555554444545543
No 319
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=65.89 E-value=12 Score=21.37 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=25.3
Q ss_pred EEEe-cccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 157 LIFA-EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 157 lIF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
++|. ++...|....++|.+.|++...+.=+..++.|+++
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l 41 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREEL 41 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHH
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHH
Confidence 4455 56777888888888888776655544444555544
No 320
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=65.70 E-value=22 Score=22.51 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCEEEEec------ccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 154 PPVLIFAE------KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 154 ~~~lIF~~------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
.+++||.. ..-.|..+.++|.+.|++...+.=....+.|++
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~ 54 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQG 54 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 47999975 567788899999999887665543333433443
No 321
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.61 E-value=8.9 Score=33.80 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=14.5
Q ss_pred CCCccEEEeehhhhhhcC
Q psy7789 56 LDVCRYLCLDEADRMVDM 73 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~ 73 (197)
....+.+||||+|.|...
T Consensus 122 ~g~~KV~IIDEvh~Ls~~ 139 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNT 139 (618)
T ss_pred cCCceEEEEEChhhCCHH
Confidence 356889999999998543
No 322
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=65.58 E-value=22 Score=32.08 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHH
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFA 107 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 107 (197)
..-..+++||+|.+... ....++..+ .+.++++++||-+.....+.
T Consensus 108 ~~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 108 GKRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred CCceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCChHhhhh
Confidence 34568999999998432 222333333 35678888887654443333
No 323
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=65.31 E-value=10 Score=28.68 Aligned_cols=54 Identities=13% Similarity=0.293 Sum_probs=42.6
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHH
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 109 (197)
..+.+.+|+||.-.=++-.....+.+++..+.+....++||+-.=+++...+..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 577889999998655555577888899999988788899988876777766644
No 324
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=65.18 E-value=9.5 Score=33.79 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=22.7
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
...+.+||||+|.|... ..+.+.+.+..-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 57889999999998543 233333444443444444444
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.14 E-value=12 Score=34.07 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=37.2
Q ss_pred ccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 59 CRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 59 l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
.=++|+|+-|.+-+.-....++.++++.|++.+.++.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 349999999999988888899999999999999999887754
No 326
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.90 E-value=12 Score=32.01 Aligned_cols=39 Identities=8% Similarity=-0.017 Sum_probs=22.8
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
..+.+.+||||+|.+... ..+.+.+.++.-|+...+++.
T Consensus 114 ~~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred cCCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEEEE
Confidence 468899999999998543 223333334443444444443
No 327
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=64.90 E-value=7.4 Score=33.62 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=26.1
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
....+.+||||||.+... ....+...+..-|+...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 467899999999998543 2334445555555566666554
No 328
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=64.82 E-value=17 Score=34.32 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=42.7
Q ss_pred CCeeEEEEEcCCChHHhHHHH----hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI----KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l----~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l 70 (197)
...|++..+|-.+-++..+.+ .+.+||++|| ..++ .-++.-+...+|||-||.+
T Consensus 828 PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----TIIE-tGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 828 PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----TIIE-TGIDIPNANTIIIERADKF 885 (1139)
T ss_pred CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----eeee-cCcCCCCCceEEEeccccc
Confidence 478999999988766555444 3569999999 4444 5667889999999999998
No 329
>PF12846 AAA_10: AAA-like domain
Probab=64.54 E-value=14 Score=28.65 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=21.8
Q ss_pred CCccEEEeehhhhhhcC-CCHHHHHHHHhhccC
Q psy7789 57 DVCRYLCLDEADRMVDM-GFEEDVRTIFSFFRG 88 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~-~~~~~i~~i~~~~~~ 88 (197)
..-..+++||||.++.. .....+..+++..++
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk 251 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRK 251 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHh
Confidence 45567899999999876 344455566655544
No 330
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.43 E-value=22 Score=29.58 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=23.5
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
..-..+++||+|.+.. .....++..+. +.+++++.+|-.
T Consensus 91 g~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att~ 129 (413)
T PRK13342 91 GRRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATTE 129 (413)
T ss_pred CCceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCCC
Confidence 3567899999999843 22333344443 355666666643
No 331
>KOG1132|consensus
Probab=64.40 E-value=6.4 Score=35.74 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHHhcCCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhh
Q psy7789 29 DVIKKGCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 29 ~~l~~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~ 71 (197)
+.+...+|||+|.=..|.+...++. +++++ ..||+||||-+-
T Consensus 217 R~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiE 260 (945)
T KOG1132|consen 217 RELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIE 260 (945)
T ss_pred hhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHH
Confidence 4455669999999877777655443 44333 489999999985
No 332
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.35 E-value=10 Score=33.93 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=24.6
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..+.+++||||+|.+... ....+.+.+...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 467789999999987432 2333444455445555565544
No 333
>PRK04841 transcriptional regulator MalT; Provisional
Probab=64.13 E-value=8.1 Score=35.34 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=34.6
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
.--++|+|++|.+-+....+.+..+++..|++..+++.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999998655566788899999998999988887754
No 334
>PRK07413 hypothetical protein; Validated
Probab=63.82 E-value=21 Score=29.52 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=43.9
Q ss_pred CCCccEEEeehhhhhhcCCC--HHHHHHHHhhccCCceEEEEeecCChhHHHHHHH
Q psy7789 56 LDVCRYLCLDEADRMVDMGF--EEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARS 109 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 109 (197)
-...++||+||+-..++.++ .+.+..+++.-|+..-+|+..-..|+++.+.+..
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 36788999999998888774 4577788888888888999888888888776644
No 335
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.79 E-value=10 Score=34.89 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=25.2
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
.+.+.+||||+|.|... ....+.+++..-|....+|+. +|-+
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~ 159 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDP 159 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCc
Confidence 56789999999999432 233444444544445555554 4433
No 336
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.79 E-value=9.1 Score=32.63 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.3
Q ss_pred CCccEEEeehhhhhhc
Q psy7789 57 DVCRYLCLDEADRMVD 72 (197)
Q Consensus 57 ~~l~~vViDEad~l~~ 72 (197)
...+.+||||+|.+..
T Consensus 120 g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD 135 (484)
T ss_pred CCCEEEEEechhhcCH
Confidence 4678999999999854
No 337
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=63.59 E-value=28 Score=28.03 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=36.4
Q ss_pred CCcEEEeCch-------HHHHHHh---cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 34 GCHMMVATPG-------RLMDMLD---KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 34 ~~~Ili~TP~-------~l~~~l~---~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
.||+.+..|+ .+.+... ... ....-+.+||||+|.+... ....+.+.++.-|+...+++.+.
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 3788887774 3333332 122 2467899999999998543 33445555555455555565443
No 338
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=63.49 E-value=6.6 Score=33.37 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=23.3
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
.+..++|+||+|.+-+......+..-... .++++++++|.
T Consensus 122 ~~~~~~i~DE~h~~~~~~~~~~l~~g~~~-r~~pl~~~IST 161 (477)
T PF03354_consen 122 LNPSLAIFDELHAHKDDELYDALESGMGA-RPNPLIIIIST 161 (477)
T ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhhcc-CCCceEEEEeC
Confidence 45679999999998653223333322222 24667766643
No 339
>KOG0018|consensus
Probab=62.87 E-value=9.1 Score=35.47 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=26.3
Q ss_pred EEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 61 YLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 61 ~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
++|+||+|.-++..-...+...++ .++.|+|+.|=
T Consensus 1076 FfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISL 1110 (1141)
T KOG0018|consen 1076 FFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISL 1110 (1141)
T ss_pred ceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEec
Confidence 999999999888654444544444 56799999974
No 340
>PF15586 Imm47: Immunity protein 47
Probab=62.78 E-value=9.3 Score=25.83 Aligned_cols=34 Identities=26% Similarity=0.144 Sum_probs=25.1
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhh
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEAD 68 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad 68 (197)
..++.||||+.|.....+..+ +-.=.++|++|.+
T Consensus 44 ~F~v~VcTP~wL~~~~~~~~~-~~gr~~LIv~~yd 77 (116)
T PF15586_consen 44 YFQVFVCTPKWLSKNCWKPGI-LWGRHMLIVEEYD 77 (116)
T ss_pred eEEEEEEcHHHHHHhhcCCcc-eeccceEEEecCC
Confidence 378999999999988775542 2334588888875
No 341
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=62.75 E-value=12 Score=32.08 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=18.9
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
-.+.+..||||+|+|....| ..+++-+
T Consensus 117 ~~ryKVyiIDEvHMLS~~af----NALLKTL 143 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAF----NALLKTL 143 (515)
T ss_pred cccceEEEEecHHhhhHHHH----HHHhccc
Confidence 57888999999999854333 3444444
No 342
>PRK07952 DNA replication protein DnaC; Validated
Probab=62.74 E-value=29 Score=26.76 Aligned_cols=87 Identities=15% Similarity=0.225 Sum_probs=48.7
Q ss_pred CeeEEEEEcCCC--hHHhHHH-----HhcCCcEEEeCchHHHHHHhcC----C-------ccCCCccEEEeehhhhhhcC
Q psy7789 12 PLRTCLAIGGVP--MNQSLDV-----IKKGCHMMVATPGRLMDMLDKK----M-------VSLDVCRYLCLDEADRMVDM 73 (197)
Q Consensus 12 ~i~~~~~~gg~~--~~~~~~~-----l~~~~~Ili~TP~~l~~~l~~~----~-------~~l~~l~~vViDEad~l~~~ 73 (197)
+....+++|+.. ....... ...+..+++.|-..+...+... . -.+...++|||||++.....
T Consensus 98 ~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s 177 (244)
T PRK07952 98 NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTES 177 (244)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCC
Confidence 334567777532 3322222 2346788888777776544321 1 12678999999999987644
Q ss_pred CCHH-HHHHHHhh-ccCCceEEEEeec
Q psy7789 74 GFEE-DVRTIFSF-FRGQRQTLLFSAT 98 (197)
Q Consensus 74 ~~~~-~i~~i~~~-~~~~~q~i~~SAT 98 (197)
.+.. .+..|+.. ......+++.|--
T Consensus 178 ~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 178 RYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3333 34445543 2334555555544
No 343
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=62.72 E-value=21 Score=29.12 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCCCEEEEec-ccccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 152 TEPPVLIFAE-KKQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 152 ~~~~~lIF~~-s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
...+++|||. +-.++..++..|+..|+++..+.||+..-.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr 127 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYR 127 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHH
Confidence 3458999995 557788899999999999999999987643
No 344
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=62.55 E-value=41 Score=22.01 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=22.6
Q ss_pred CCEEEEec-ccccHHHHHHHHHh--------CCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAE-KKQDVDAIHEYLLL--------KGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~-s~~~~~~l~~~L~~--------~~~-~~~~~h~~~~~ 189 (197)
.++++||+ +-.++...+..|.+ .|+ ++..+.||+..
T Consensus 63 ~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~ 108 (113)
T cd01531 63 DTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNA 108 (113)
T ss_pred CeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHH
Confidence 47899997 43444444444432 254 68999998764
No 345
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=62.54 E-value=22 Score=22.87 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=25.9
Q ss_pred cccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 163 KQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
+++|+.+..+|...+++...+.=.++++.|++.
T Consensus 16 k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em 48 (92)
T cd03030 16 KKRQQEVLGFLEAKKIEFEEVDISMNEENRQWM 48 (92)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCCCHHHHHHH
Confidence 577788888888888888777777777777764
No 346
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=62.48 E-value=32 Score=27.68 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=28.3
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
....+.+|||+||.|... ....+.++++-=|.+..+++.|..
T Consensus 111 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 111 YGIAQVVIVDPADAINRA-ACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred cCCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCCCeEEEEECC
Confidence 357889999999999543 344455555555556667776653
No 347
>PRK13766 Hef nuclease; Provisional
Probab=62.45 E-value=21 Score=32.31 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=37.2
Q ss_pred HhhcCCCCEEEEecccccHHHHHHHHHhC-C---CCeEeecCCCChhhhhhh
Q psy7789 148 CLQKTEPPVLIFAEKKQDVDAIHEYLLLK-G---KPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 148 ~l~~~~~~~lIF~~s~~~~~~l~~~L~~~-~---~~~~~~h~~~~~~~R~~i 195 (197)
.+...++++||.|+|+.-++..++.++.. + .++..++|+.+..+|.++
T Consensus 53 ~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~ 104 (773)
T PRK13766 53 RLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAEL 104 (773)
T ss_pred HHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHH
Confidence 33344578999999998888888777664 3 378889999999988764
No 348
>KOG0344|consensus
Probab=62.00 E-value=39 Score=29.45 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=39.8
Q ss_pred CCeeEEEEEcCCChHHhH---HHHh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSL---DVIK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR 69 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~---~~l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~ 69 (197)
-+|++..++|+.+..... +.+. +...++||| +.+.++ +++..+.+||-++.-.
T Consensus 411 ~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 411 DNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred cCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 479999999997644433 4443 348999999 777766 7899999999866543
No 349
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=61.94 E-value=19 Score=29.75 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=37.1
Q ss_pred chHHHHHHhcCCccCCCc----------cEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 42 PGRLMDMLDKKMVSLDVC----------RYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 42 P~~l~~~l~~~~~~l~~l----------~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
.+.+...+.++.+.+..+ .++|||||-.+ -..+++-|+.+..+..+++++.-
T Consensus 325 ~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 325 DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred hHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcCC
Confidence 445555665555443222 28899999887 57789999999988888888754
No 350
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.68 E-value=15 Score=32.27 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=42.9
Q ss_pred cCCcEEEeCchHHHHHHhcCC------ccCCCccEE-EeehhhhhhcCC---------CHHHHHHH-Hhhc--cCCceEE
Q psy7789 33 KGCHMMVATPGRLMDMLDKKM------VSLDVCRYL-CLDEADRMVDMG---------FEEDVRTI-FSFF--RGQRQTL 93 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~------~~l~~l~~v-ViDEad~l~~~~---------~~~~i~~i-~~~~--~~~~q~i 93 (197)
++..|..+|.+.|...+.+.. .++.+.++| +-||||++.... ....+... ...+ .++.-++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 457899999999998875432 246666665 679999996421 11122222 1222 2344567
Q ss_pred EEeecCCh
Q psy7789 94 LFSATMPK 101 (197)
Q Consensus 94 ~~SAT~~~ 101 (197)
.+|||.+.
T Consensus 160 ef~at~~k 167 (812)
T COG3421 160 EFSATIPK 167 (812)
T ss_pred hhhhcCCc
Confidence 79999983
No 351
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=61.59 E-value=12 Score=34.25 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.9
Q ss_pred CchhhHHHHHHHhhc------------CCCCEEEEecccccHHHHHHHHHh
Q psy7789 137 KQEAKIVYLLECLQK------------TEPPVLIFAEKKQDVDAIHEYLLL 175 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~------------~~~~~lIF~~s~~~~~~l~~~L~~ 175 (197)
.+..|...|.++|++ .++++||||+...+|..|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 456788877777742 134799999999999999999965
No 352
>PLN02955 8-amino-7-oxononanoate synthase
Probab=61.52 E-value=3.6 Score=34.91 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=22.1
Q ss_pred EEEecccccHHHHHHHHHhCCCCeEeec
Q psy7789 157 LIFAEKKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 157 lIF~~s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
-|++.+...+..+++.|.+.|+-+..+.
T Consensus 397 pI~ig~~~~a~~~~~~L~~~Gi~v~~i~ 424 (476)
T PLN02955 397 SLVVGNQEKALKASRYLLKSGFHVMAIR 424 (476)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCEEEEEC
Confidence 4667888999999999999997655443
No 353
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.24 E-value=10 Score=30.14 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..-+.||+||+|.+-.. ....+..++...++..++++.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987432 3445666666666666665544
No 354
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.21 E-value=14 Score=32.47 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=24.1
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..+-+.+||||+|.|... -.+.+.+.+..-|...-+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 367889999999998543 2333444444444444444443
No 355
>KOG0331|consensus
Probab=61.14 E-value=14 Score=31.66 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=35.5
Q ss_pred CeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEE
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLC 63 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vV 63 (197)
+.++..++|+.+..+....|+ +.+.|+||| +..- .-+++.++++||
T Consensus 365 ~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVAa-RGLDi~dV~lVI 414 (519)
T KOG0331|consen 365 GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVAA-RGLDVPDVDLVI 414 (519)
T ss_pred CcceeeecccccHHHHHHHHHhcccCCcceEEEc-----cccc-ccCCCccccEEE
Confidence 578999999999877776665 358999999 3332 456788888887
No 356
>KOG0933|consensus
Probab=60.99 E-value=13 Score=34.38 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=54.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
-|+-+..-+||.=.+. ...|++|-.=+||-.- ++.++. ++=-.+-|+||+|.-++-++-..+-.+++.--++.
T Consensus 1064 dGLEvkV~~G~iWKeS-L~ELSGGQRSLVALsL-IlamL~-----fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~s 1136 (1174)
T KOG0933|consen 1064 DGLEVKVKFGGIWKES-LSELSGGQRSLVALSL-ILAMLK-----FKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHS 1136 (1174)
T ss_pred cceEEEEEeCccHHHH-HHHhcCchHHHHHHHH-HHHHHc-----CCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCC
Confidence 3677878888754443 3446777666665532 223333 33334889999999999877788888777777899
Q ss_pred eEEEEee
Q psy7789 91 QTLLFSA 97 (197)
Q Consensus 91 q~i~~SA 97 (197)
|+|++|=
T Consensus 1137 QFIVVSL 1143 (1174)
T KOG0933|consen 1137 QFIVVSL 1143 (1174)
T ss_pred eEEEEEc
Confidence 9999985
No 357
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=60.83 E-value=22 Score=32.30 Aligned_cols=57 Identities=26% Similarity=0.340 Sum_probs=47.5
Q ss_pred hhHHHHHHHh-h---cCCC--CEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 140 AKIVYLLECL-Q---KTEP--PVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 140 ~k~~~l~~~l-~---~~~~--~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|...+.+++ . ..+. +++||++-.....-+...|...++....++|.++.++|....
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i 754 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELI 754 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHH
Confidence 5677777777 2 2344 899999999999999999999998899999999998887653
No 358
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=60.76 E-value=10 Score=29.71 Aligned_cols=36 Identities=6% Similarity=-0.055 Sum_probs=31.0
Q ss_pred CCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.++++||++=.++-.++..|+..|+ ++..+.|++..
T Consensus 232 ~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 232 RPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE 268 (281)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence 4799999999899889999998999 48889988754
No 359
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.50 E-value=13 Score=30.38 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=22.8
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
.+.+.+||||+|.+.... .+.+...+..-|....+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 567899999999985421 223333344444455555543
No 360
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.37 E-value=8.8 Score=33.12 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=24.9
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..+.+.+||||+|.+... ..+.+.+.+..-|....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 366789999999998543 2333444445545555566554
No 361
>KOG0390|consensus
Probab=60.01 E-value=32 Score=31.24 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=51.6
Q ss_pred CeeEEEEEcCCCh-H-HhHHHHhc-----CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHh
Q psy7789 12 PLRTCLAIGGVPM-N-QSLDVIKK-----GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFS 84 (197)
Q Consensus 12 ~i~~~~~~gg~~~-~-~~~~~l~~-----~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~ 84 (197)
.|.+..++|+.+. . .+...+.- ..-|++-+=+.+.+.+. .+....++++|.||.|.+=+. ...+...+.
T Consensus 325 ~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~--~s~~~kaL~ 400 (776)
T KOG0390|consen 325 RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS--DSLTLKALS 400 (776)
T ss_pred ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch--hhHHHHHHH
Confidence 4667777777653 1 11111111 24566777666665443 234578889999999998543 233334444
Q ss_pred hccCCceEEEEeecC-ChhHHHHH
Q psy7789 85 FFRGQRQTLLFSATM-PKKIQNFA 107 (197)
Q Consensus 85 ~~~~~~q~i~~SAT~-~~~~~~~~ 107 (197)
.+ +-++.|++|.|. ..+..+..
T Consensus 401 ~l-~t~rRVLLSGTp~QNdl~EyF 423 (776)
T KOG0390|consen 401 SL-KTPRRVLLTGTPIQNDLKEYF 423 (776)
T ss_pred hc-CCCceEEeeCCcccccHHHHH
Confidence 55 345567777774 44444443
No 362
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=59.93 E-value=26 Score=23.73 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCCCEEEEeccccc---------HHHHHHHHHh---CCCCeEeecCCCCh
Q psy7789 152 TEPPVLIFAEKKQD---------VDAIHEYLLL---KGKPFFTLKSLKED 189 (197)
Q Consensus 152 ~~~~~lIF~~s~~~---------~~~l~~~L~~---~~~~~~~~h~~~~~ 189 (197)
...+++||+.+-.. +..+++.|.. .+.++..+.||+..
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~ 123 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQ 123 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHH
Confidence 34579999976655 7788888887 45689999999754
No 363
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.57 E-value=45 Score=24.64 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=57.4
Q ss_pred CeeEEEEEcCCC---hHHhHHHHhc--CCcEEEeC----chHHH-HHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHH
Q psy7789 12 PLRTCLAIGGVP---MNQSLDVIKK--GCHMMVAT----PGRLM-DMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVR 80 (197)
Q Consensus 12 ~i~~~~~~gg~~---~~~~~~~l~~--~~~Ili~T----P~~l~-~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~ 80 (197)
|-++++++.+.. -.+|.+.+.+ +..+.... |..+. ..+.. ..-++.++++||-+-+.... ...+.+.
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~ 106 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELK 106 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHH
Confidence 678888888764 3344444443 34444443 33333 23332 22356779999999766432 2456677
Q ss_pred HHHhhccCCceEEEEeecCChhHHHHHHHhc
Q psy7789 81 TIFSFFRGQRQTLLFSATMPKKIQNFARSAL 111 (197)
Q Consensus 81 ~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 111 (197)
.+++...+..-.+++|||...+.......+.
T Consensus 107 ~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 107 KLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp HHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred HHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 7777776666778999999877555555553
No 364
>PRK10869 recombination and repair protein; Provisional
Probab=59.56 E-value=9.4 Score=33.18 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=53.5
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK 137 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 137 (197)
..+.+|+||.+.-++......+..++..+....|+++.|.- +.+. .+.... +.+.... ........+..+.
T Consensus 452 ~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~--~~~~----~~ad~~--~~v~k~~-~~~~t~s~i~~L~ 522 (553)
T PRK10869 452 ETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHL--PQVA----GCGHQH--FFVSKET-DGGMTETHMQPLD 522 (553)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC--HHHH----HhCCEE--EEEeccc-cCCeeeEEEEECC
Confidence 57899999999988876777777888877667787665543 3332 222222 2222222 1222444455578
Q ss_pred chhhHHHHHHHhhc
Q psy7789 138 QEAKIVYLLECLQK 151 (197)
Q Consensus 138 ~~~k~~~l~~~l~~ 151 (197)
.+++...+-+.+.-
T Consensus 523 ~~~R~~EiARMl~G 536 (553)
T PRK10869 523 KKARLQELARLLGG 536 (553)
T ss_pred hhHHHHHHHHHhCC
Confidence 88888888888753
No 365
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=59.36 E-value=45 Score=21.46 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=28.2
Q ss_pred CCEEEEec------ccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 154 PPVLIFAE------KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 154 ~~~lIF~~------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
.+++||.- ..-.|..+.++|.+.|++...+.=...++.|++
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~ 58 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQG 58 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 47999973 477888999999999887665543333444443
No 366
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.14 E-value=16 Score=32.00 Aligned_cols=40 Identities=5% Similarity=-0.029 Sum_probs=24.2
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..+.+.+||||+|.|... ....+.+.+..-|....+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 467889999999988543 2334444444444444455443
No 367
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=59.00 E-value=18 Score=29.65 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=15.7
Q ss_pred ccEEEeehhhhhhcCCCHHHHHHHHh
Q psy7789 59 CRYLCLDEADRMVDMGFEEDVRTIFS 84 (197)
Q Consensus 59 l~~vViDEad~l~~~~~~~~i~~i~~ 84 (197)
.-.||+||+|.+.+..-.+.+..+++
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~ 164 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLR 164 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHH
Confidence 35789999999973222234444443
No 368
>PRK07413 hypothetical protein; Validated
Probab=58.98 E-value=28 Score=28.77 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=41.6
Q ss_pred CCccEEEeehhhhhhcCCCH--HHHHHHHhhccCCceEEEEeec-CChhHHHHHHH
Q psy7789 57 DVCRYLCLDEADRMVDMGFE--EDVRTIFSFFRGQRQTLLFSAT-MPKKIQNFARS 109 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~--~~i~~i~~~~~~~~q~i~~SAT-~~~~~~~~~~~ 109 (197)
...++||+||+-..++.++. +.+..+++..|.+.-+|+..-. .|+++.+.+..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 67889999999988887754 4777888888888778887776 77777776543
No 369
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=58.96 E-value=27 Score=27.98 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=30.5
Q ss_pred CCEEEEec-ccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAE-KKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~-s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
+++++||. +-.++...+.+|+..|+++..+.||+..
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~a 111 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKA 111 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHH
Confidence 35999995 5678889999999999999999998754
No 370
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=58.86 E-value=17 Score=28.61 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=35.3
Q ss_pred CcEEEeCchHHHHH------H----hcCCcc--CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 35 CHMMVATPGRLMDM------L----DKKMVS--LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 35 ~~Ili~TP~~l~~~------l----~~~~~~--l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
+|++--+|...... + ...... ....+.+++||||.+... ....+...+..-+.+..+++.+.
T Consensus 74 ~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 74 PDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 68887777544431 1 112222 367899999999999552 33444444444444445554443
No 371
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=58.76 E-value=12 Score=30.73 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=26.6
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
-+..+.+||||+|.+... ....+.+.++.-|....++++|..
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 367789999999988432 344455555554555556665544
No 372
>PRK04195 replication factor C large subunit; Provisional
Probab=58.63 E-value=12 Score=31.94 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=40.6
Q ss_pred eeEEEEEcCCC--hHHhHHHHhc--CCcEEEeCch------HHHHHHhcC---CccC-CCccEEEeehhhhhhcCCCHHH
Q psy7789 13 LRTCLAIGGVP--MNQSLDVIKK--GCHMMVATPG------RLMDMLDKK---MVSL-DVCRYLCLDEADRMVDMGFEED 78 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~~~l~~--~~~Ili~TP~------~l~~~l~~~---~~~l-~~l~~vViDEad~l~~~~~~~~ 78 (197)
-+..+++|... .......+.+ +.+++..++. .+...+... .-.+ ..-++|||||+|.+....-...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~ 118 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG 118 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH
Confidence 46677777643 3333344432 4556554432 222222211 1112 2578999999999865322233
Q ss_pred HHHHHhhccC-CceEEEEe
Q psy7789 79 VRTIFSFFRG-QRQTLLFS 96 (197)
Q Consensus 79 i~~i~~~~~~-~~q~i~~S 96 (197)
+..+++.+.. ...+|+++
T Consensus 119 ~~aL~~~l~~~~~~iIli~ 137 (482)
T PRK04195 119 ARAILELIKKAKQPIILTA 137 (482)
T ss_pred HHHHHHHHHcCCCCEEEec
Confidence 3444444433 33444443
No 373
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=58.45 E-value=15 Score=25.29 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=25.4
Q ss_pred CCCccEEEeehhhhhhcCC----------CHHHHHHHHhhccCCceEEEEeecC
Q psy7789 56 LDVCRYLCLDEADRMVDMG----------FEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~----------~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
-.+.+++|+||++.+.+.. ....+..+..........+++.+..
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 3577799999999886431 1344555555554333334444443
No 374
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=58.23 E-value=15 Score=24.55 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=18.7
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
......+++||++.+... ....+..++...
T Consensus 82 ~~~~~~lilDe~~~~~~~-~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRG-AQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhhHH-HHHHHHHHHHhc
Confidence 456789999999987222 233444444444
No 375
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.07 E-value=22 Score=30.16 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=37.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+.+||.+++++=++...+.|+..|+++..++|+.+.+++..+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i 93 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNV 93 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 4579999999999998889999999999999999988876654
No 376
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.04 E-value=16 Score=32.23 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.9
Q ss_pred CCccEEEeehhhhhh
Q psy7789 57 DVCRYLCLDEADRMV 71 (197)
Q Consensus 57 ~~l~~vViDEad~l~ 71 (197)
...+++||||+|.+.
T Consensus 118 g~~kVIIIDEad~Lt 132 (624)
T PRK14959 118 GRYKVFIIDEAHMLT 132 (624)
T ss_pred CCceEEEEEChHhCC
Confidence 567899999999984
No 377
>KOG1002|consensus
Probab=57.78 E-value=9.4 Score=32.68 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=40.5
Q ss_pred hHHHHHHHhh---cC--CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 141 KIVYLLECLQ---KT--EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 141 k~~~l~~~l~---~~--~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|+..|.+-+. +. ..+.|||..=-....-+.-.|.+.|++|.-+-|+|++..|.+-+
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardati 681 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATI 681 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHH
Confidence 4555555443 22 24789998755556666666788899999999999999998643
No 378
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=57.68 E-value=32 Score=31.72 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCCEEEEeccc----ccHHHHHHHHHhCC--CCeEeecCCCChhhhhhh
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKK----QDVDAIHEYLLLKG--KPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~----~~~~~l~~~L~~~~--~~~~~~h~~~~~~~R~~i 195 (197)
+..+..+++....++|++-+|+ ...+++.+++.+.+ +.+..++|+.++++|+++
T Consensus 104 lPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~ 163 (851)
T COG1205 104 LPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAI 163 (851)
T ss_pred HHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHH
Confidence 3444555555556889999996 56667777777776 899999999999999654
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=57.59 E-value=19 Score=32.59 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=28.4
Q ss_pred cEEEeehhhhhhcCCC----HHHHHHHHhhccCCceEEEEeecCChhH
Q psy7789 60 RYLCLDEADRMVDMGF----EEDVRTIFSFFRGQRQTLLFSATMPKKI 103 (197)
Q Consensus 60 ~~vViDEad~l~~~~~----~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 103 (197)
..++|||+|.++..+. ...+..+++.+-...++.++.||-.++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999975432 2345555555545556667777765553
No 380
>KOG0740|consensus
Probab=57.31 E-value=41 Score=28.30 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=37.9
Q ss_pred CCCccEEEeehhhhhhcC--------CCHHHHHHHHhhc----cCCceEEEEeecC-ChhHHHHHHHhcCCCeEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDM--------GFEEDVRTIFSFF----RGQRQTLLFSATM-PKKIQNFARSALVKPITINV 119 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~--------~~~~~i~~i~~~~----~~~~q~i~~SAT~-~~~~~~~~~~~~~~~~~i~~ 119 (197)
......+.|||+|.++.. ..+...+.+++.. ..+-++++++||= |.+.++.+.+.+.....|-.
T Consensus 243 ~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yipl 319 (428)
T KOG0740|consen 243 SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPL 319 (428)
T ss_pred hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecC
Confidence 355668889999999842 1233333333333 3455888899995 44566666665554444433
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.28 E-value=90 Score=25.80 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=38.2
Q ss_pred EEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHHhhccCCceEEEEeecCChhH-HHHHHHhc
Q psy7789 38 MVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIFSFFRGQRQTLLFSATMPKKI-QNFARSAL 111 (197)
Q Consensus 38 li~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~-~~~~~~~~ 111 (197)
.+.+++.+...+. .+.+.++++||.+-....+ ...+.+..+.........++++|||...+. .+....|.
T Consensus 199 ~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~ 270 (374)
T PRK14722 199 AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYR 270 (374)
T ss_pred ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHH
Confidence 3445555444333 3466789999999765322 123334443222222335778999986554 44555553
No 382
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=57.18 E-value=1e+02 Score=24.80 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCChHHhHHH---H-hcCCcEEEeCc----hHHHHHHhcCCccCCCccEEEeehhhhh-----hcCCCHHH
Q psy7789 12 PLRTCLAIGGVPMNQSLDV---I-KKGCHMMVATP----GRLMDMLDKKMVSLDVCRYLCLDEADRM-----VDMGFEED 78 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~---l-~~~~~Ili~TP----~~l~~~l~~~~~~l~~l~~vViDEad~l-----~~~~~~~~ 78 (197)
|..+.+...+.+.+.+.+. + ..++|=+|..| ..+...+.. ..+.+|++|..+.- ...+....
T Consensus 88 gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-----~~~P~V~i~~~~~~~~~~~V~~Dn~~~ 162 (333)
T COG1609 88 GYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAA-----AGIPVVVIDRSPPGLGVPSVGIDNFAG 162 (333)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh-----cCCCEEEEeCCCccCCCCEEEEChHHH
Confidence 6666666666544433322 2 34676666655 223333332 25567888764331 11223333
Q ss_pred HHHHHhhccC--CceEEEEeecCC-hhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEE--cCchhhHHHHHHHhhcCC
Q psy7789 79 VRTIFSFFRG--QRQTLLFSATMP-KKIQNFARSALVKPITINVGRAGAASMNVVQEVEY--VKQEAKIVYLLECLQKTE 153 (197)
Q Consensus 79 i~~i~~~~~~--~~q~i~~SAT~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~--~~~~~k~~~l~~~l~~~~ 153 (197)
.....+++-. ..++.+++.... ....+....|..-...- ..... ...+.. -....-...+.+++....
T Consensus 163 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~------~~~~~-~~~i~~~~~~~~~g~~~~~~ll~~~~ 235 (333)
T COG1609 163 AYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREA------GLPIN-PEWIVEGDFSEESGYEAAERLLARGE 235 (333)
T ss_pred HHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHC------CCCCC-cceEEecCCChHHHHHHHHHHHhcCC
Confidence 3333333322 456777777642 22233333332110000 00000 011111 144556677778887766
Q ss_pred C-CEEEEecccccHHHHHHHHHhCCCC
Q psy7789 154 P-PVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 154 ~-~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
. ++-|||.+...|.-+...+++.|.+
T Consensus 236 ~~ptAif~~nD~~Alg~l~~~~~~g~~ 262 (333)
T COG1609 236 PRPTAIFCANDLMALGALRALRELGLR 262 (333)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 6 8999999999999999999999875
No 383
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.18 E-value=14 Score=30.75 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=24.1
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChh
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKK 102 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 102 (197)
+=..+.+||+|++...+ -..++-.+ .+..++++.||-..+
T Consensus 104 r~tiLflDEIHRfnK~Q----QD~lLp~v-E~G~iilIGATTENP 143 (436)
T COG2256 104 RRTILFLDEIHRFNKAQ----QDALLPHV-ENGTIILIGATTENP 143 (436)
T ss_pred CceEEEEehhhhcChhh----hhhhhhhh-cCCeEEEEeccCCCC
Confidence 34578899999986431 11222222 366788888885433
No 384
>KOG0341|consensus
Probab=56.65 E-value=19 Score=29.95 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=34.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEE
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLC 63 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vV 63 (197)
+|+.++.++||.+.++....++ +.-||+|+|. ... +.++|-++..||
T Consensus 444 KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD-----VAS-KGLDFp~iqHVI 494 (610)
T KOG0341|consen 444 KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD-----VAS-KGLDFPDIQHVI 494 (610)
T ss_pred ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec-----chh-ccCCCccchhhc
Confidence 4899999999999888776654 3479999993 333 455666666554
No 385
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.64 E-value=14 Score=32.15 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=25.1
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..+-+.+||||+|.+... ..+.+...+..-|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 357789999999998543 3334445555544455555544
No 386
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=56.46 E-value=96 Score=24.33 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=59.9
Q ss_pred CCcEEE-eCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHHhhccCCceEEEEeecCC-hhHHHHHHHh
Q psy7789 34 GCHMMV-ATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIFSFFRGQRQTLLFSATMP-KKIQNFARSA 110 (197)
Q Consensus 34 ~~~Ili-~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~-~~~~~~~~~~ 110 (197)
+.++.. .+|..+...+..- -...+.++++||-+=..... .....+..+++...+..-.+.+|||.. .++.++++.|
T Consensus 130 ~~~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 130 GFEVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred CceEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 344444 4666655544311 11246789999999776432 233445555554444444667999875 4677777776
Q ss_pred cCCCeEEEeCCCCccCcceeE-EEEEcCchhhHHHHHHHhhcCCCCEEEEec
Q psy7789 111 LVKPITINVGRAGAASMNVVQ-EVEYVKQEAKIVYLLECLQKTEPPVLIFAE 161 (197)
Q Consensus 111 ~~~~~~i~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~ 161 (197)
-.- .+.. .+-.+.+..+.=.++.+....+.|+.-+++
T Consensus 209 ~~~--------------~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 209 KDI--------------HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred CCC--------------CCCEEEEEeecCCCCccHHHHHHHHHCcCEEEEeC
Confidence 321 1111 122234445555555555555545544443
No 387
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.41 E-value=12 Score=32.60 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=53.2
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK 137 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 137 (197)
..+++|+||.+.-++......+..++..+....|++++|-- +.+. . + .+. .+.+.... ........+..+.
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~--~~~~---~-~-ad~-~~~l~k~~-~~~~t~s~i~~L~ 532 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHL--PQVA---A-H-ADA-HFKVEKEG-LDGRTATRVRPLS 532 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEECh--HHHH---H-h-cCe-EEEEEEcc-CCCcEEEEEEECC
Confidence 46899999999988876777777777777667777776553 2222 2 2 222 22222221 1233444556678
Q ss_pred chhhHHHHHHHhh
Q psy7789 138 QEAKIVYLLECLQ 150 (197)
Q Consensus 138 ~~~k~~~l~~~l~ 150 (197)
.+++...+-+.+.
T Consensus 533 ~~~r~~EiArml~ 545 (563)
T TIGR00634 533 GEERVAELARMLA 545 (563)
T ss_pred ccHHHHHHHHHhC
Confidence 8888888888875
No 388
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=56.30 E-value=12 Score=33.97 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=41.6
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHH-HHHhc------CCccCCCccEEEeehhhhhh
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLM-DMLDK------KMVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~-~~l~~------~~~~l~~l~~vViDEad~l~ 71 (197)
+|+.+.....+.+..++..... +||..+|-..+- ++++. ...-...+.+-|+||+|.++
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred cCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 4789999999887776655554 899999986653 22221 11224578899999999875
No 389
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=56.02 E-value=24 Score=24.62 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=33.5
Q ss_pred EEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhC
Q psy7789 134 EYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 134 ~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~ 176 (197)
+......+...+..++.+ .+.+++|+|.+...++.+-+.|-..
T Consensus 7 Y~l~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~ 52 (142)
T PRK05728 7 YHLTLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTF 52 (142)
T ss_pred EecCchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 334566677777777764 3568999999999999999999654
No 390
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=55.82 E-value=24 Score=30.88 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=36.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+.++|.++++.-++.-.+.|+..|+++..+||+++.+++..+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~ 95 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDI 95 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 3568888999988888888899999999999999998887654
No 391
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=55.35 E-value=31 Score=29.72 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=35.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
.|+++..++|+.+..++...+. +..+|+|||. .+. ..+++.++++||.
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~-rGiDip~v~~VI~ 442 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG-RGVDLLRVRQVII 442 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh-ccCCcccCCEEEE
Confidence 3789999999988766654443 3589999994 444 4456788989985
No 392
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=55.30 E-value=13 Score=26.96 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=28.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccC-CceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-QRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-~~q~i~~SA 97 (197)
.+.+++++||.+.-++......+..++..+.+ ..++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56789999999988886666666666655533 366666654
No 393
>PF13514 AAA_27: AAA domain
Probab=55.08 E-value=19 Score=34.09 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=42.3
Q ss_pred EEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEE
Q psy7789 62 LCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 117 (197)
Q Consensus 62 vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i 117 (197)
||+|++=.-++......+..++..+....|+|+||.- +.+.+.++..+.+.+.|
T Consensus 1055 ~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch--~~l~~~a~~~~~~~v~v 1108 (1111)
T PF13514_consen 1055 FILDDIFVNFDDERARAALELLAELSRRRQVIYFTCH--EHLVELAREVFGDRVNV 1108 (1111)
T ss_pred EEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEecc--HHHHHHHHHhcCCCCce
Confidence 8899986666666777888888888889999999876 77888888776655444
No 394
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=54.33 E-value=40 Score=26.79 Aligned_cols=41 Identities=20% Similarity=0.087 Sum_probs=28.4
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
+..+.+|||+||.|-.. ....+.+++..-|++.-++++|..
T Consensus 94 ~~~kv~ii~~ad~mt~~-AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-AISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHhhcCCCCeEEEEEeCC
Confidence 67889999999998543 455566666665556666666555
No 395
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=54.31 E-value=1.8e+02 Score=29.83 Aligned_cols=111 Identities=8% Similarity=0.141 Sum_probs=59.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhc-cCCceEEEEeecC--C----hhHHHHHHHhcCCCeEEEeCCCCccCcce
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFF-RGQRQTLLFSATM--P----KKIQNFARSALVKPITINVGRAGAASMNV 129 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~--~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 129 (197)
..-++||||||-.+ -...+..+++.. +.+.+++++.-+- + ..+...+.... -+ ...+.........+
T Consensus 528 ~~~~vlIVDEAsMl----~~~~~~~Ll~~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~g-v~-t~~l~~i~rq~~~v 601 (1960)
T TIGR02760 528 SNKDIFVVDEANKL----SNNELLKLIDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEGG-VT-TYAWVDTKQQKASV 601 (1960)
T ss_pred CCCCEEEEECCCCC----CHHHHHHHHHHHhhcCCEEEEEcChhhcCccccchHHHHHHHCC-Cc-EEEeecccccCcce
Confidence 45689999999987 344555666655 4688999887663 1 12222222221 11 11221111111111
Q ss_pred eEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHh
Q psy7789 130 VQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLL 175 (197)
Q Consensus 130 ~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~ 175 (197)
.+......++...+.+.+-. ...+++|+..+.++...|....+.
T Consensus 602 --~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 602 --EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred --eeeccCchHHHHHHHHHHHhcccccCceEEEcCCcHHHHHHHHHHHH
Confidence 22223334444444444432 334699999999888888887653
No 396
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.26 E-value=29 Score=29.57 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=13.9
Q ss_pred CCCccEEEeehhhhhhc
Q psy7789 56 LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 56 l~~l~~vViDEad~l~~ 72 (197)
+.+.+.+|+||+|.+..
T Consensus 115 ~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK 131 (472)
T ss_pred cCCeEEEEEEChHHhHH
Confidence 46678999999999853
No 397
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=54.19 E-value=35 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=34.7
Q ss_pred CCeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
.|+++..++|+.+..++.+.+ . +..+||||| +.+. .-+++.++++||.
T Consensus 268 ~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip~v~~VI~ 319 (456)
T PRK10590 268 DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIEELPHVVN 319 (456)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcccCCEEEE
Confidence 378899999998866655444 3 358999999 4444 4467788888874
No 398
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=53.70 E-value=15 Score=34.07 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=37.8
Q ss_pred CCcEEEeCchHHHHHHh-cCC----------cc---CCCc-cEEEeehhhhhhcCCCHHHHHHHHhhccCCce-EEEEee
Q psy7789 34 GCHMMVATPGRLMDMLD-KKM----------VS---LDVC-RYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ-TLLFSA 97 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~-~~~----------~~---l~~l-~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q-~i~~SA 97 (197)
..+|++.|-+.+..-.. +.. .. +... -.||+||.|++-.. ...+..| ..+ +++ ++.+||
T Consensus 162 ~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~k~~~~i-~~l--npl~~lrysA 236 (986)
T PRK15483 162 TIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--NKFYQAI-EAL--KPQMIIRFGA 236 (986)
T ss_pred ceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--hHHHHHH-Hhc--CcccEEEEee
Confidence 47999999988875321 100 01 1222 27899999998543 2344555 344 333 356999
Q ss_pred cCCh
Q psy7789 98 TMPK 101 (197)
Q Consensus 98 T~~~ 101 (197)
|.+.
T Consensus 237 T~~~ 240 (986)
T PRK15483 237 TFPD 240 (986)
T ss_pred ecCC
Confidence 9975
No 399
>PRK06921 hypothetical protein; Provisional
Probab=53.67 E-value=23 Score=27.62 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=46.1
Q ss_pred eeEEEEEcCCC--hHHhHHH-----Hhc-CCcEEEeCchHHHHHHhcC-------CccCCCccEEEeehhhh-hhcC---
Q psy7789 13 LRTCLAIGGVP--MNQSLDV-----IKK-GCHMMVATPGRLMDMLDKK-------MVSLDVCRYLCLDEADR-MVDM--- 73 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~~~-----l~~-~~~Ili~TP~~l~~~l~~~-------~~~l~~l~~vViDEad~-l~~~--- 73 (197)
-...+++|... ....... +.. +..++..|...++..+... .-.+.+.++|||||++. +-+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~ 196 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRA 196 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccC
Confidence 35567777643 2222222 233 6788877766655444221 12367889999999955 2111
Q ss_pred -C-CHHHHHHHHhhccC-CceEEEEeecCChh
Q psy7789 74 -G-FEEDVRTIFSFFRG-QRQTLLFSATMPKK 102 (197)
Q Consensus 74 -~-~~~~i~~i~~~~~~-~~q~i~~SAT~~~~ 102 (197)
. ....+..++...-. ...+ ++|+..++.
T Consensus 197 t~~~~~~lf~iin~R~~~~k~t-Iitsn~~~~ 227 (266)
T PRK06921 197 TEWQIEQMYSVLNYRYLNHKPI-LISSELTID 227 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCCE-EEECCCCHH
Confidence 1 12345555544432 3344 555555433
No 400
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.66 E-value=18 Score=31.37 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=54.6
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK 137 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 137 (197)
....+||||+|.=+...-...+..-++.+....|++++|-- |.+......- ..|.-... .......+....
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHl--PQVAa~ad~H----~~V~K~~~---~~~T~s~V~~L~ 523 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHL--PQVAAMADTH----FLVEKESE---DGRTESRVRPLD 523 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecH--HHHHhhhcce----EEEEEecC---CCceEEeeeeCC
Confidence 45599999999854433455677778888899999999764 5555544322 22222111 233455566777
Q ss_pred chhhHHHHHHHhhc
Q psy7789 138 QEAKIVYLLECLQK 151 (197)
Q Consensus 138 ~~~k~~~l~~~l~~ 151 (197)
.++|...+-+.+--
T Consensus 524 ~eeRveEiARMl~G 537 (557)
T COG0497 524 KEERVEEIARMLGG 537 (557)
T ss_pred HhHHHHHHHHHhcC
Confidence 88888888877753
No 401
>KOG3128|consensus
Probab=53.45 E-value=94 Score=24.33 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=17.4
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l 70 (197)
.+++.|.-|-.+-..+++- ..-.-.++.||=..|..
T Consensus 13 ~~~v~vkdp~~v~~~l~~~-v~gga~~~~vIsdfd~T 48 (298)
T KOG3128|consen 13 EEQVRVKDPTAVEAKLRKM-VVGGAGKLQVISDFDYT 48 (298)
T ss_pred CcceeecChHHHHHHHHHH-hcCCccceeEeecCchh
Confidence 3566666666666555421 11233334454445443
No 402
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=53.44 E-value=43 Score=27.04 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=35.0
Q ss_pred CCcEEEeCch---------HHHHHHhcC--CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 34 GCHMMVATPG---------RLMDMLDKK--MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 34 ~~~Ili~TP~---------~l~~~l~~~--~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
.||+..-.|+ .+..+...- .-..+.-+.+||||||.|... ....+.+.++.-|.+..+++.|.
T Consensus 71 HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~-aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 71 HPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRN-AANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHH-HHHHHHHHHhCCCCCeEEEEEEC
Confidence 4788877774 233332211 112467889999999999543 33344444454344445554443
No 403
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=53.16 E-value=37 Score=26.16 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=17.7
Q ss_pred cEEEeehhhhhhcCC---CH-HHHHHHHhhcc
Q psy7789 60 RYLCLDEADRMVDMG---FE-EDVRTIFSFFR 87 (197)
Q Consensus 60 ~~vViDEad~l~~~~---~~-~~i~~i~~~~~ 87 (197)
..+++||+|.+...+ +. +.+..+++.+.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e 138 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGME 138 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHh
Confidence 589999999986422 22 34555555553
No 404
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=53.14 E-value=49 Score=31.09 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhc-cCCceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFF-RGQRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT 98 (197)
+..-++|||||+-.+.. ..+..+++.. +...++|++.-+
T Consensus 431 l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 431 LTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred cccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEECCH
Confidence 56678999999998733 3444555543 457788887665
No 405
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=53.12 E-value=44 Score=26.53 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCcEEEeCchH-------HHHHHh---cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 34 GCHMMVATPGR-------LMDMLD---KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 34 ~~~Ili~TP~~-------l~~~l~---~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
.||+.+-.|+. +.++.. .... -+.-+.+|||+||.|... ....+.+.+.-=|++.-++++|..
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~-~~~~kV~II~~ad~m~~~-AaNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGY-EGKQQVFIIKDADKMHVN-AANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcc-cCCcEEEEeehhhhcCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 48999888853 222222 1222 366789999999998542 233333444443334445555443
No 406
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=53.11 E-value=27 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 164 QDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
..++++++.....+..+..+...+++.|...++
T Consensus 44 GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe 76 (95)
T PF13167_consen 44 GKVEEIKELIEELDADLVVFDNELSPSQQRNLE 76 (95)
T ss_pred hHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHH
Confidence 456666666666677777777777777665543
No 407
>KOG1002|consensus
Probab=53.00 E-value=39 Score=29.16 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=44.8
Q ss_pred eeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc-------------cCCCcc--EEEeehhhhhhcCCCHH
Q psy7789 13 LRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV-------------SLDVCR--YLCLDEADRMVDMGFEE 77 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~-------------~l~~l~--~vViDEad~l~~~~~~~ 77 (197)
+++.. +-|.......+.+.+ +|++.+|-..+-+..++... -+..++ .+|+||||-+-+... .
T Consensus 258 lkv~~-YhG~~R~~nikel~~-YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s-n 334 (791)
T KOG1002|consen 258 LKVYI-YHGAKRDKNIKELMN-YDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS-N 334 (791)
T ss_pred eEEEE-EecccccCCHHHhhc-CcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc-c
Confidence 55544 445444445555543 99999998777766643111 133333 689999999865311 1
Q ss_pred HHHHHHhhccCCceEEEEeecC
Q psy7789 78 DVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 78 ~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
.-+.+. .+ .....+++|.|-
T Consensus 335 TArAV~-~L-~tt~rw~LSGTP 354 (791)
T KOG1002|consen 335 TARAVF-AL-ETTYRWCLSGTP 354 (791)
T ss_pred HHHHHH-hh-HhhhhhhccCCc
Confidence 111221 12 233456777774
No 408
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=52.81 E-value=73 Score=23.84 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=34.6
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
....+...+.....++.||.+. ..+.+.+.++..+..+.-+||..+.+.
T Consensus 43 ~a~~i~~~~~~~i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~ 91 (210)
T PRK01222 43 QAAELAAALPPFVKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEF 91 (210)
T ss_pred HHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 3444444444334578888874 666777778888999999999887765
No 409
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=52.74 E-value=32 Score=20.76 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=22.5
Q ss_pred EEe-cccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 158 IFA-EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 158 IF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
+|. ++.-.|.....+|.+.|+....+.-+..++.+++
T Consensus 3 ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~ 40 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDE 40 (79)
T ss_pred EEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHH
Confidence 444 5566677777777777766666655555544444
No 410
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=52.19 E-value=48 Score=26.40 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 188 (197)
++|++.||.-==+||....+|...|+ .|+.++||.-
T Consensus 172 ~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl 208 (308)
T COG1054 172 DKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGIL 208 (308)
T ss_pred CCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHH
Confidence 45899999999999999999999998 6888888753
No 411
>PRK14701 reverse gyrase; Provisional
Probab=52.06 E-value=32 Score=34.16 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=35.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhC------CCCeEeecCCCChhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK------GKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~R~~i 195 (197)
+.+++|.++|+.=+...++.|+.. +.++..+||+++.+++.++
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~ 170 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEF 170 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHH
Confidence 458999999999999999888763 5678899999999887543
No 412
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=51.83 E-value=37 Score=29.25 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.0
Q ss_pred CCCccEEEeehhhhhhc
Q psy7789 56 LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 56 l~~l~~vViDEad~l~~ 72 (197)
..+-+.+||||+|.+..
T Consensus 126 ~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSK 142 (507)
T ss_pred cCCcEEEEEEChhhcCH
Confidence 46778999999999844
No 413
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=51.68 E-value=21 Score=29.59 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=32.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~ 190 (197)
..++++||.+-.++...+..|+..|+ ++..+.||+..=
T Consensus 343 d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W 381 (392)
T PRK07878 343 DRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAW 381 (392)
T ss_pred CCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHH
Confidence 35799999998899999999999998 488899998653
No 414
>KOG0352|consensus
Probab=51.40 E-value=12 Score=31.44 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=36.5
Q ss_pred CEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
=+|||.+-..-...=-+.|....+++..+++.||..||.+|+
T Consensus 63 ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~ 104 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIM 104 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHH
Confidence 689999877777777777888899999999999999999886
No 415
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=51.37 E-value=46 Score=31.61 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT 98 (197)
+..-++|||||+..+. ...+..+++..+ ...+++++.-+
T Consensus 466 l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 466 LDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred CCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 5566799999999873 345556666664 46788887665
No 416
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=51.35 E-value=25 Score=28.93 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=30.3
Q ss_pred CEEEEecccccHHHHHHHHHhCCCC--eEeecCCCC
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLKGKP--FFTLKSLKE 188 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~~~~--~~~~h~~~~ 188 (197)
++++||.+=.++...+..|++.|++ +..+.||+.
T Consensus 334 ~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 334 NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 7999999999999999999999986 688889875
No 417
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=51.08 E-value=24 Score=31.39 Aligned_cols=59 Identities=8% Similarity=0.007 Sum_probs=41.6
Q ss_pred CchhhHHHHHHHhhc--CCCCEEEEecccccHHHHHHHHH----hCCCCeEeecCCCChhhhhhh
Q psy7789 137 KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLL----LKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~--~~~~~lIF~~s~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+..-+...+.++.. .+++++|.++|+.=|...++.+. ..|+++..+.|++++++|+..
T Consensus 126 GeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~ 190 (656)
T PRK12898 126 GEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAA 190 (656)
T ss_pred CCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHH
Confidence 444444555444432 24689999999877766666654 459999999999999887753
No 418
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=50.67 E-value=23 Score=20.85 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=19.5
Q ss_pred EEEEecccccHHHHHHHHHhCCCCeEeecCC
Q psy7789 156 VLIFAEKKQDVDAIHEYLLLKGKPFFTLKSL 186 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 186 (197)
.+..+++.-.|+.+...|.+.|+.+......
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 4677888899999999999999887755433
No 419
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=50.62 E-value=20 Score=28.73 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=30.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..++++||++-.++-..+-.|+..|++ +..+.|++..
T Consensus 269 ~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~e 306 (320)
T PLN02723 269 DSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTE 306 (320)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHH
Confidence 358999999987888888888888984 7888888754
No 420
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.50 E-value=36 Score=25.72 Aligned_cols=38 Identities=16% Similarity=0.026 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++++..+.+..|||.+...+..+...+++.|++
T Consensus 160 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 197 (263)
T cd06280 160 EAALAAWLAAPERPEALVASNGLLLLGALRAVRAAGLR 197 (263)
T ss_pred HHHHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 45667777665567899999999999999999998863
No 421
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=50.25 E-value=44 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=32.9
Q ss_pred EEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhhhh
Q psy7789 156 VLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R~~ 194 (197)
+||.++|++-|..+++.+... ++++..++||++...+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~ 145 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE 145 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH
Confidence 999999999999999988643 567899999999777653
No 422
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.10 E-value=36 Score=20.58 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=19.3
Q ss_pred CEEEEecccccHHHHHHHHHhCCCCeE
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLKGKPFF 181 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~~~~~~ 181 (197)
..+|.++|...+....+.|++.|+++.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 456777777788888888887776443
No 423
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=50.03 E-value=52 Score=20.24 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=6.6
Q ss_pred HHhCCCCeEeecC
Q psy7789 173 LLLKGKPFFTLKS 185 (197)
Q Consensus 173 L~~~~~~~~~~h~ 185 (197)
-.+.|++...+-|
T Consensus 47 a~~~g~~~~iiig 59 (91)
T cd00860 47 AQLQKIPYILVVG 59 (91)
T ss_pred HHHcCCCEEEEEC
Confidence 3445555555544
No 424
>KOG0991|consensus
Probab=49.99 E-value=19 Score=27.92 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
.+-+.+|+||||.+-+ |....+++.+....+.+++.+.
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhh
Confidence 6778999999999854 3566677777777666666543
No 425
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.63 E-value=29 Score=30.31 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R~~ 194 (197)
.++||.++|++-|..+++.+... ++++..+||+.+.+.+.+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~ 129 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRE 129 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH
Confidence 57999999999999888877653 678999999988776543
No 426
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=49.63 E-value=58 Score=26.25 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=36.0
Q ss_pred CCcEEEeCchH---------HHHHHhc--CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 34 GCHMMVATPGR---------LMDMLDK--KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 34 ~~~Ili~TP~~---------l~~~l~~--~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
.||+.+-.|+. +..+... ..-.....+.+|||+||.|... ....+.+.++-=|++..+++.|..
T Consensus 73 HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 73 HPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred CCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 48898877752 1221111 1112467899999999999543 334444555543445555555443
No 427
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.50 E-value=64 Score=24.50 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC--eEeecCCCChhhhhhh
Q psy7789 143 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP--FFTLKSLKEDQNNQTL 195 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~--~~~~h~~~~~~~R~~i 195 (197)
..+..++..++....|||.+...+..+.+.|++.|.+ +..+-++.+++..+.+
T Consensus 174 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~~~~ivg~d~~~~~~~~i 228 (274)
T cd06311 174 SVMQDLLTKFPKIDAVWAHDDDMAVGVLAAIKQAGRTDIKFVVGGAGSKDMIKMI 228 (274)
T ss_pred HHHHHHHHhCCCcCEEEECCCcHHHHHHHHHHHcCCCCCceEEEeCCCHHHHHHH
Confidence 4555666666556789999999999999999988863 5555556666655544
No 428
>KOG1133|consensus
Probab=49.31 E-value=8.5 Score=34.15 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=0.0
Q ss_pred cCCCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCcc-EEEeehhhhhhc
Q psy7789 8 ALPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCR-YLCLDEADRMVD 72 (197)
Q Consensus 8 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~-~vViDEad~l~~ 72 (197)
.+|...+.+..||-.....+ +++++-.=..|++--.++.+.++==+ .|||||||.+++
T Consensus 304 ~lGk~~~~CPYY~SR~avp~-------aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 304 ALGKELRGCPYYASRRAVPQ-------AQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred HhhhhcCCCCchhhhhcccc-------ccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
No 429
>KOG0953|consensus
Probab=49.28 E-value=68 Score=28.14 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=51.2
Q ss_pred CeeEEEEEcCCChHHhH---HHHhc---CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC----CHHHHHH
Q psy7789 12 PLRTCLAIGGVPMNQSL---DVIKK---GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG----FEEDVRT 81 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~---~~l~~---~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~----~~~~i~~ 81 (197)
+-+++.+||+.+.+... ...++ .++|+||| +.+-= .++ =+++-+|+=-.-.+.+.. -..++..
T Consensus 381 ~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-----DAIGM-GLN-L~IrRiiF~sl~Kysg~e~~~it~sqikQ 453 (700)
T KOG0953|consen 381 NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-----DAIGM-GLN-LNIRRIIFYSLIKYSGRETEDITVSQIKQ 453 (700)
T ss_pred CcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-----ccccc-ccc-cceeEEEEeecccCCcccceeccHHHHHH
Confidence 46799999998755433 33433 58999999 44321 122 235556654433332211 2334444
Q ss_pred HHhhcc--CCceEEEEeecCChhHHHHHHHhcCCC
Q psy7789 82 IFSFFR--GQRQTLLFSATMPKKIQNFARSALVKP 114 (197)
Q Consensus 82 i~~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~ 114 (197)
|-.+-. ...+-.....|+..+........+..|
T Consensus 454 IAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 454 IAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred HhhcccccccCCcCceEEEeeHhhHHHHHHHHhCC
Confidence 433321 122334556677666666666666644
No 430
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=49.05 E-value=59 Score=26.34 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=35.4
Q ss_pred CCcEEEeCchH---------HHHHHh---cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 34 GCHMMVATPGR---------LMDMLD---KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 34 ~~~Ili~TP~~---------l~~~l~---~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
.||+..-+|+. +..+.. ... .....+.+|||+||.|... ....+.+.++-=|.+.-+++.|.
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred CCCEEEEecccccccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 48998888863 222221 122 2477899999999999543 33344444444333444555543
No 431
>KOG0741|consensus
Probab=48.82 E-value=37 Score=29.60 Aligned_cols=93 Identities=14% Similarity=0.250 Sum_probs=54.3
Q ss_pred CCeeEEEEEcCCC-----hHHhHHHHhcCCcEEEeCchHHHHHHhc-----------CCccCCCccEEEeehhhhhhcCC
Q psy7789 11 IPLRTCLAIGGVP-----MNQSLDVIKKGCHMMVATPGRLMDMLDK-----------KMVSLDVCRYLCLDEADRMVDMG 74 (197)
Q Consensus 11 ~~i~~~~~~gg~~-----~~~~~~~l~~~~~Ili~TP~~l~~~l~~-----------~~~~l~~l~~vViDEad~l~~~~ 74 (197)
.++..+++.|-.. ...+...-+.-|=|-|++|+.+.-+-+. ... -+.+..+|+|+..++++|-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY-kS~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAY-KSPLSIIVVDDIERLLDYV 614 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhh-cCcceEEEEcchhhhhccc
Confidence 4677777777532 2233333345688889999887643221 111 3678899999999999862
Q ss_pred -----CHHH----HHHHHhhccC-CceEEEEeecCChhHH
Q psy7789 75 -----FEED----VRTIFSFFRG-QRQTLLFSATMPKKIQ 104 (197)
Q Consensus 75 -----~~~~----i~~i~~~~~~-~~q~i~~SAT~~~~~~ 104 (197)
|... +.-+++..|+ .++++++..|-..++.
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL 654 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL 654 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHH
Confidence 3332 2233444454 3456666555443333
No 432
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=48.57 E-value=66 Score=28.53 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=27.2
Q ss_pred hHHHHHHHhhcCC-CCEEEEecccccHHHHHHHHHhC
Q psy7789 141 KIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 141 k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~~~ 176 (197)
+......-++..+ +...|-|.|...|..+-+.|++.
T Consensus 642 r~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre~ 678 (747)
T COG3973 642 RNPDIIPRMKKRGSETIAVICKTDHDCKAVMDSLREK 678 (747)
T ss_pred hhHHHHHHHHhcCCCceEEECCcHHHHHHHHHHHhhc
Confidence 4555555555443 46889999999999999999865
No 433
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.55 E-value=66 Score=23.41 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC--CCCeEeecCCCChhhhhh
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~ 194 (197)
...+++.....+.++-++=.+...++.+++.|++. |.++...||..++++.++
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~ 91 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKA 91 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHH
Confidence 33444433333333444445555666666666655 555555566666555443
No 434
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=48.27 E-value=31 Score=30.47 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=29.7
Q ss_pred cCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeecCC
Q psy7789 55 SLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSATMP 100 (197)
Q Consensus 55 ~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~ 100 (197)
.=.+.+++++||||-+ -.+.+..|+..+. +++.+|..|+|-+
T Consensus 296 RGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 296 RGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred cCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCCCC
Confidence 3456779999999977 3344555555553 5788899998854
No 435
>KOG0339|consensus
Probab=48.27 E-value=36 Score=29.41 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=32.5
Q ss_pred CC-EEEEecccccHHHHHHHHH----hCCCCeEeecCCCChhhhhh
Q psy7789 154 PP-VLIFAEKKQDVDAIHEYLL----LKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 154 ~~-~lIF~~s~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~R~~ 194 (197)
+| .+|.|+|++-|..++..-+ .+|+++.++|||+|..++..
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k 341 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK 341 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH
Confidence 35 6777899999988877654 45889999999999887643
No 436
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.16 E-value=32 Score=28.46 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=14.2
Q ss_pred CCCccEEEeehhhhhhc
Q psy7789 56 LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 56 l~~l~~vViDEad~l~~ 72 (197)
+..-+.+||||+|.+..
T Consensus 125 ~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI 141 (397)
T ss_pred cCCeEEEEEeChhhCCH
Confidence 46778999999999854
No 437
>PTZ00110 helicase; Provisional
Probab=47.99 E-value=44 Score=29.00 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
.|+.+..++|+.+..++...+ . +...||||| +.+. .-+++.++++||.
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~~-rGIDi~~v~~VI~ 451 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVAS-RGLDVKDVKYVIN 451 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chhh-cCCCcccCCEEEE
Confidence 367888999998866655443 3 357899999 4444 4457788888884
No 438
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=47.75 E-value=26 Score=24.26 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=26.9
Q ss_pred EEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhC
Q psy7789 133 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~ 176 (197)
|+...+......+..++++ .+.+++|+|.+.+.++.+-+.|-..
T Consensus 6 Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~ 52 (137)
T PF04364_consen 6 FYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTF 52 (137)
T ss_dssp EEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTS
T ss_pred EEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCC
Confidence 3334443334666666653 4678999999999999999999765
No 439
>PTZ00424 helicase 45; Provisional
Probab=47.61 E-value=44 Score=27.33 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=34.8
Q ss_pred CCeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEee
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLD 65 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViD 65 (197)
.++++..++||.+..++...+ . +..+|+||| +.+. ..+++.++++||.-
T Consensus 290 ~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT-----~~l~-~GiDip~v~~VI~~ 342 (401)
T PTZ00424 290 RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITT-----DLLA-RGIDVQQVSLVINY 342 (401)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEc-----cccc-CCcCcccCCEEEEE
Confidence 368899999998866655433 3 358999999 4443 44567888888853
No 440
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.27 E-value=28 Score=30.73 Aligned_cols=41 Identities=7% Similarity=0.018 Sum_probs=25.0
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
+..-+.+||||+|.+... ....+...+...|...-+| +.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEE-EEeC
Confidence 567889999999998542 2334445555544444444 4444
No 441
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=47.25 E-value=41 Score=29.39 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=14.1
Q ss_pred CCCccEEEeehhhhhhc
Q psy7789 56 LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 56 l~~l~~vViDEad~l~~ 72 (197)
...-+.+||||+|.|..
T Consensus 117 ~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST 133 (559)
T ss_pred cCCeEEEEEECcccCCH
Confidence 46788999999999854
No 442
>PRK07411 hypothetical protein; Validated
Probab=47.18 E-value=26 Score=29.05 Aligned_cols=40 Identities=8% Similarity=-0.116 Sum_probs=33.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
..++++||.+-.++...+..|++.|++...+.||+..=.+
T Consensus 342 d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~~W~~ 381 (390)
T PRK07411 342 GHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITAWSR 381 (390)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHHHHHH
Confidence 3579999999999999999999999998788888765433
No 443
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=46.84 E-value=18 Score=34.04 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=34.1
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
....++++||.+.-++......+..++..+....|+|++|.-
T Consensus 1095 ~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 456899999999999877777777788777777898887765
No 444
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=46.83 E-value=27 Score=25.68 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=22.2
Q ss_pred cEEEeehhhhhh-cC----CCHHHHHHHHhhccC-CceEEEEeecC
Q psy7789 60 RYLCLDEADRMV-DM----GFEEDVRTIFSFFRG-QRQTLLFSATM 99 (197)
Q Consensus 60 ~~vViDEad~l~-~~----~~~~~i~~i~~~~~~-~~q~i~~SAT~ 99 (197)
-.+|+||+|.+. .. .+...+..++..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 588999999998 22 234455555555322 23344455554
No 445
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.73 E-value=32 Score=29.43 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=13.8
Q ss_pred CCCccEEEeehhhhhhc
Q psy7789 56 LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 56 l~~l~~vViDEad~l~~ 72 (197)
...-+.+||||||.+..
T Consensus 117 ~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cCCeeEEEEEChhhcCH
Confidence 36778999999998843
No 446
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=46.36 E-value=39 Score=31.00 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhc----CCcEEEeCchHHHHHHhcCCccCCCccEEE
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKK----GCHMMVATPGRLMDMLDKKMVSLDVCRYLC 63 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~----~~~Ili~TP~~l~~~l~~~~~~l~~l~~vV 63 (197)
.++.+..++|+.+..+|.+.+.. ...|||+| +... ..+++.++++||
T Consensus 235 ~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT-----nIAE-rgItIp~V~~VI 285 (819)
T TIGR01970 235 SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT-----NIAE-TSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec-----chHh-hcccccCceEEE
Confidence 47999999999999888887753 36899999 4444 455677888776
No 447
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=46.33 E-value=19 Score=32.84 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=24.5
Q ss_pred EEEeehhhhhhcCCCHHHHHHHHhhccCCceEE-EEeecCChhHH
Q psy7789 61 YLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTL-LFSATMPKKIQ 104 (197)
Q Consensus 61 ~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i-~~SAT~~~~~~ 104 (197)
.||+||-|.+... -..+..+-+. .+|++ =+|||+..+..
T Consensus 208 IvIvDEPh~f~~~--~k~~~~i~~l---~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 208 IVIVDEPHRFLGD--DKTYGAIKQL---NPLLILRFGATFKDEYN 247 (985)
T ss_pred EEEecChhhcccc--hHHHHHHHhh---CceEEEEecccchhhhc
Confidence 7899999999763 1222222222 55554 59999986644
No 448
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=46.23 E-value=49 Score=25.88 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=33.1
Q ss_pred hhhHHHHHHHhh-cCCCCEEEEecccc-cHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 139 EAKIVYLLECLQ-KTEPPVLIFAEKKQ-DVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 139 ~~k~~~l~~~l~-~~~~~~lIF~~s~~-~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
.+.+..++.-+- ....++++||.+-. .+..++..|...|++ +..+.|+++.
T Consensus 72 ~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 125 (281)
T PRK11493 72 PETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAG 125 (281)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHH
Confidence 344444444442 22357999998744 455677778888986 7788888754
No 449
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=46.14 E-value=1e+02 Score=24.79 Aligned_cols=41 Identities=17% Similarity=0.028 Sum_probs=27.1
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
....+.+++|++|.+-.. ....+.+.++..+....+++.|.
T Consensus 111 ~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEEEEeC
Confidence 367889999999998543 45556666666655555555443
No 450
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=45.69 E-value=24 Score=25.56 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCEEEEeccc--ccHHHHHHHHHhCCCCeEeec
Q psy7789 154 PPVLIFAEKK--QDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 154 ~~~lIF~~s~--~~~~~l~~~L~~~~~~~~~~h 184 (197)
-++++|++.. ..+..+++.|...|+++..+.
T Consensus 83 DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 83 DRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp -EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 3799999654 468889999999999988877
No 451
>CHL00181 cbbX CbbX; Provisional
Probab=45.35 E-value=58 Score=25.67 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=25.9
Q ss_pred cEEEeehhhhhhcC----CCHH-HHHHHHhhccCC-ceEEEEeecCChhHHH
Q psy7789 60 RYLCLDEADRMVDM----GFEE-DVRTIFSFFRGQ-RQTLLFSATMPKKIQN 105 (197)
Q Consensus 60 ~~vViDEad~l~~~----~~~~-~i~~i~~~~~~~-~q~i~~SAT~~~~~~~ 105 (197)
..+++||+|.+... ++.. .+..+++.+... ..++++-|+.+..+..
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 68999999998532 2333 334444444322 2355555676655544
No 452
>PF13245 AAA_19: Part of AAA domain
Probab=45.14 E-value=39 Score=20.69 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=24.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKS 185 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~ 185 (197)
+.++++.++|+..++++.+.+ ..+.. +..+|+
T Consensus 42 ~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 42 GKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred CCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 457999999999999999999 43444 666664
No 453
>KOG1015|consensus
Probab=45.13 E-value=26 Score=32.69 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=29.7
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhH
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKI 103 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 103 (197)
...++||.||+|.|-+. ...+...+..+...+++++....+...+
T Consensus 820 pGPD~vVCDE~HiLKNe--ksa~Skam~~irtkRRI~LTGTPLQNNL 864 (1567)
T KOG1015|consen 820 PGPDFVVCDEGHILKNE--KSAVSKAMNSIRTKRRIILTGTPLQNNL 864 (1567)
T ss_pred CCCCeEEecchhhhccc--hHHHHHHHHHHHhheeEEeecCchhhhh
Confidence 45779999999998654 4555666666655556665555555443
No 454
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=45.11 E-value=28 Score=25.68 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=29.0
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
..-+++++||...-++......+..+++.+....++++.|-
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH 174 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITH 174 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 45579999999887776667777777777655556555443
No 455
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=45.01 E-value=26 Score=30.76 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=36.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+-+||-.+=..=-+.=.+.|+..|+++..++|.++.++|..|+
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~ 100 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVL 100 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHH
Confidence 45788888866655555666778899999999999999999886
No 456
>KOG2501|consensus
Probab=44.98 E-value=95 Score=22.24 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=30.7
Q ss_pred hhhHHHHHHHhhcCCCC-EEEEecccccHHHHHHHHHhC
Q psy7789 139 EAKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 139 ~~k~~~l~~~l~~~~~~-~lIF~~s~~~~~~l~~~L~~~ 176 (197)
..++..+.+.++....+ -|||+++..+.+.+.+++..+
T Consensus 52 TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 52 TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 35677777777776655 599999999999999999875
No 457
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=44.98 E-value=91 Score=21.57 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=30.8
Q ss_pred CCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQ 190 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 190 (197)
.++++.++++.-++..++.+.+. ++++..+||+.+.+
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSIS 85 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHH
T ss_pred ceEEEEeeccccccccccccccccccccccccccccccccc
Confidence 48999999999999999888765 45788999988854
No 458
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=44.94 E-value=34 Score=31.55 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=27.6
Q ss_pred CccEEEeehhhhhhcCCC---HHHHHHHHhhccCCceEEEEeecCChhH
Q psy7789 58 VCRYLCLDEADRMVDMGF---EEDVRTIFSFFRGQRQTLLFSATMPKKI 103 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~---~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 103 (197)
.-..++|||+|.+...+. ......+++..-....+.++.||-.++.
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 345999999999985321 1233445444434556666667765554
No 459
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=44.73 E-value=53 Score=23.37 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=36.1
Q ss_pred EEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhC
Q psy7789 132 EVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 132 ~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~ 176 (197)
.||......+...+..++++ .+.+++|.|.+...++.|=+.|-..
T Consensus 5 ~FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf 52 (154)
T PRK06646 5 SIYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTY 52 (154)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 35566778888888888875 3568999999999999999998654
No 460
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=44.72 E-value=47 Score=25.67 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=62.4
Q ss_pred CCHHHHHHHHhhccCCceEEEEeecCChhHHHHHH----Hh-cCCCeEEEeCCCCc------cCcceeEEEEEcCchh-h
Q psy7789 74 GFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFAR----SA-LVKPITINVGRAGA------ASMNVVQEVEYVKQEA-K 141 (197)
Q Consensus 74 ~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~----~~-~~~~~~i~~~~~~~------~~~~i~~~~~~~~~~~-k 141 (197)
|.+..-..+.+.+.+..+ ++|--+..+-.+.++ .+ +.+.+.+...+-.. .....+..+..+++++ -
T Consensus 50 GSG~lt~~l~r~v~p~G~--v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~ 127 (247)
T PF08704_consen 50 GSGSLTHALARAVGPTGH--VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEA 127 (247)
T ss_dssp TTSHHHHHHHHHHTTTSE--EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGG
T ss_pred CcHHHHHHHHHHhCCCeE--EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCCHHHH
Confidence 344444444444444444 344445444333222 22 23345555544321 1245777888888876 4
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK 178 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~ 178 (197)
+..+.+.|+..++...+|+++.+.+..+.+.|++.|+
T Consensus 128 i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 128 IPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp HHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 6777788855567899999999999999999999875
No 461
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=44.21 E-value=82 Score=20.45 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=30.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhCC---CCeEeecCCCChhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKG---KPFFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~ 191 (197)
.++++++|++..-+++..+.+.... ..+..++++....+
T Consensus 30 ~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (144)
T cd00046 30 GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH
Confidence 4689999999999998888876554 67778887766554
No 462
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=44.05 E-value=68 Score=24.68 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=79.3
Q ss_pred CeeEEEEEcCCC---hHHhHHHH-hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehh---hhhhcCCCHH----HHH
Q psy7789 12 PLRTCLAIGGVP---MNQSLDVI-KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEA---DRMVDMGFEE----DVR 80 (197)
Q Consensus 12 ~i~~~~~~gg~~---~~~~~~~l-~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEa---d~l~~~~~~~----~i~ 80 (197)
|+++...-...+ .....+.+ ..++++||++...+.+.+.+-.-...+.+++++|-. +.+....|.. .+.
T Consensus 31 gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~d~~~~~~Nv~~~~~~~~e~~yla 110 (258)
T cd06353 31 GVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKEYPDVKFEHCSGYKTAPNVGSYFARIYEGRYLA 110 (258)
T ss_pred CCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHHHHHHCCCCEEEECCCCCCCCCeeeEechhhHHHHHH
Confidence 666655554423 33333433 468999999999988887654444567788887741 1111111211 122
Q ss_pred HHH-hhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC---chhhHHHHHHHhhcCCCCE
Q psy7789 81 TIF-SFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK---QEAKIVYLLECLQKTEPPV 156 (197)
Q Consensus 81 ~i~-~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~~~l~~~~~~~ 156 (197)
-.+ ..+.+...+.+.+..-.+.+......|..-.. ...+.++....+.. ...|-..+...+-..+ .=
T Consensus 111 G~~Aa~~t~t~kVG~I~g~~~~~~~~~~~gF~~G~~--------~~~p~~~v~~~~~g~~~D~~~a~~~a~~l~~~G-~D 181 (258)
T cd06353 111 GVVAGKMTKTNKVGYVAAFPIPEVVRGINAFALGAR--------SVNPDATVKVIWTGSWFDPAKEKEAALALIDQG-AD 181 (258)
T ss_pred HHHHHHhhcCCcEEEEcCcccHHHHHHHHHHHHHHH--------HHCCCcEEEEEEecCCCCcHHHHHHHHHHHHCC-Cc
Confidence 222 22234445566666544555555555542110 01122222223332 2344344444333333 34
Q ss_pred EEEecccccHHHHHHHHHhCCCCeEeec
Q psy7789 157 LIFAEKKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 157 lIF~~s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
+||... ...-..+..++.|..+..+.
T Consensus 182 vI~~~~--~~~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 182 VIYQHT--DSPGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred EEEecC--CChHHHHHHHHhCCEEEeec
Confidence 777765 33455666667775544443
No 463
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.95 E-value=71 Score=26.71 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=51.4
Q ss_pred HHHHHHHhhcc-----CCceEEEEeecCChh--HHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHh
Q psy7789 77 EDVRTIFSFFR-----GQRQTLLFSATMPKK--IQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECL 149 (197)
Q Consensus 77 ~~i~~i~~~~~-----~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 149 (197)
+.+..+++.++ .-.+++++|.|+... +..+......+...|....-.. ...+ ...+.-...+-..+
T Consensus 94 DAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~g-----dTr~--~d~~~~~~vlt~~v 166 (429)
T PF10100_consen 94 DAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYG-----DTRW--SDGEQPNRVLTTAV 166 (429)
T ss_pred HHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccc-----ccee--ccCCCcceehhhhh
Confidence 34445555554 356899999999754 4555555555555554431110 0000 01111111111111
Q ss_pred hcCCCCEEEEec--ccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 150 QKTEPPVLIFAE--KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 150 ~~~~~~~lIF~~--s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
++++-|-++ ......+++..+.+.|+++....+-+..+-|
T Consensus 167 ---K~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 167 ---KKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred ---hceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 122333221 2344556666777777777666666655554
No 464
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.65 E-value=51 Score=25.27 Aligned_cols=38 Identities=5% Similarity=-0.145 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
.+.+.++++..+.+..|||.+...+..+...|++.|++
T Consensus 166 ~~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~~~gl~ 203 (269)
T cd06287 166 YAACAQLLAQHPDLDALCVPVDAFAVGAVRAATELGRA 203 (269)
T ss_pred HHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34556666665567999999999999999999999874
No 465
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=43.64 E-value=39 Score=32.37 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=33.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhC----CCC---eEeecCCCChhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLK----GKP---FFTLKSLKEDQNNQT 194 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~----~~~---~~~~h~~~~~~~R~~ 194 (197)
.+++++|.++|+.-|..+++.+++. |+. +..+||+++.++|++
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~ 169 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKE 169 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHH
Confidence 3568999999999999998887754 443 346899999988754
No 466
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=43.60 E-value=33 Score=32.16 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=34.0
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhC----C-CCeEe-ecCCCChhhhhhhh
Q psy7789 151 KTEPPVLIFAEKKQDVDAIHEYLLLK----G-KPFFT-LKSLKEDQNNQTLE 196 (197)
Q Consensus 151 ~~~~~~lIF~~s~~~~~~l~~~L~~~----~-~~~~~-~h~~~~~~~R~~i~ 196 (197)
..++++++-++|..=+.+.++.|.+. | .++.. +||.|+.+++++.+
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~l 174 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEAL 174 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHH
Confidence 34568999999987777777777654 3 44433 99999999988765
No 467
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=43.60 E-value=87 Score=21.85 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=36.2
Q ss_pred HHHHHHhhcC-----CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCC
Q psy7789 143 VYLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKE 188 (197)
Q Consensus 143 ~~l~~~l~~~-----~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 188 (197)
..++++++.+ ++++.|+=.|..-.+-++.+|.+.|..+...|....
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~ 63 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI 63 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence 4455555543 457889889999999999999999999999997553
No 468
>PRK10865 protein disaggregation chaperone; Provisional
Probab=43.59 E-value=35 Score=31.45 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=26.9
Q ss_pred cEEEeehhhhhhcCCC---HHHHHHHHhhccCCceEEEEeecCChhH
Q psy7789 60 RYLCLDEADRMVDMGF---EEDVRTIFSFFRGQRQTLLFSATMPKKI 103 (197)
Q Consensus 60 ~~vViDEad~l~~~~~---~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 103 (197)
..++|||+|.+...+. ......+++..-....+.++.||-.++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 4899999999985421 1233444444334556667777766554
No 469
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=43.52 E-value=85 Score=25.83 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=41.6
Q ss_pred hhhHHHHHHHhhcCCCCEEEEecc------cccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 139 EAKIVYLLECLQKTEPPVLIFAEK------KQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 139 ~~k~~~l~~~l~~~~~~~lIF~~s------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
..+...+.+++++.+..++||... .-....+.+.|++.|+++..+-++.+.. +.+
T Consensus 299 ~~R~~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~~-~gQ 359 (377)
T TIGR03190 299 HTRYDHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITNP-IGP 359 (377)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCCc-hHH
Confidence 567888999999888777777643 2444467788888999999999988843 444
No 470
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.38 E-value=36 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCCccEEEeehhhhhhc
Q psy7789 56 LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 56 l~~l~~vViDEad~l~~ 72 (197)
+..-+.+||||+|.|..
T Consensus 118 ~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 118 LARYKVYIIDEVHMLST 134 (585)
T ss_pred cCCeEEEEEeChHhCCH
Confidence 46788999999998854
No 471
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=43.35 E-value=68 Score=24.82 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhc-cCCceEEEEeecCChhHHHHHHHhcCCCeEEE
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPITIN 118 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~ 118 (197)
-+.+.+++||+=...+..|.+....-+..+ .++.-+++.|-- ...++.++...++++
T Consensus 164 ~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd-----~~~I~~~Cd~~i~l~ 221 (249)
T COG1134 164 VEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD-----LGAIKQYCDRAIWLE 221 (249)
T ss_pred cCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHhcCeeEEEe
Confidence 567899999998888877877655555444 556555555543 234455555555553
No 472
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=43.25 E-value=38 Score=30.05 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCEEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R 192 (197)
+++||.|+|++-|..+++.+... ++++..+||+.+.+.+
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q 118 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHH
Confidence 47999999999999988876542 7889999999876654
No 473
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=43.22 E-value=49 Score=27.79 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=21.0
Q ss_pred HHhHHHHhcCCc------EEEeCch---------HHHHHHhcCCccCCCccEEEeehhhh
Q psy7789 25 NQSLDVIKKGCH------MMVATPG---------RLMDMLDKKMVSLDVCRYLCLDEADR 69 (197)
Q Consensus 25 ~~~~~~l~~~~~------Ili~TP~---------~l~~~l~~~~~~l~~l~~vViDEad~ 69 (197)
+.-.+.+...|+ ++|+.|- .+.+.+. +.-..|+|||||-
T Consensus 154 ~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h------~~~~~llvDEAhG 207 (417)
T PF01276_consen 154 EDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICH------KHGIPLLVDEAHG 207 (417)
T ss_dssp HHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHC------CTECEEEEE-TT-
T ss_pred HHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhc------ccCCEEEEEcccc
Confidence 444566665443 7888872 2222222 3345899999993
No 474
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=43.16 E-value=38 Score=28.50 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=32.6
Q ss_pred CCEEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R~ 193 (197)
.++||.|+|++-|..+++.++.. +.++..++|+.+...+.
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~ 117 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI 117 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHH
Confidence 37999999999999998877643 67889999999876543
No 475
>KOG1803|consensus
Probab=43.10 E-value=30 Score=30.38 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=26.4
Q ss_pred cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD 72 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~ 72 (197)
.+.+|+++|-+.-+..+..+ ...+++|||||-.-++
T Consensus 337 ~n~~VVfaTl~ga~~~~~~~----~~fD~vIIDEaaQamE 372 (649)
T KOG1803|consen 337 SNSRVVFATLGGALDRLLRK----RTFDLVIIDEAAQAME 372 (649)
T ss_pred cccceEEEeccchhhhhhcc----cCCCEEEEehhhhhcc
Confidence 46899999987766632211 5677999999987765
No 476
>PLN02363 phosphoribosylanthranilate isomerase
Probab=42.78 E-value=1.2e+02 Score=23.65 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=36.2
Q ss_pred hhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 140 AKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 140 ~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
+....+...+... ..++-||++ ...+++.+.++..+..+.-+||+.+.+.-
T Consensus 86 e~a~~I~~~l~~~~~~~VgVfv~--~~~~~I~~~~~~~~ld~VQLHG~e~~~~~ 137 (256)
T PLN02363 86 SVAKEISQVAREGGAKPVGVFVD--DDANTILRAADSSDLELVQLHGNGSRAAF 137 (256)
T ss_pred HHHHHHHHhccccCccEEEEEeC--CCHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 4455555555543 346889986 45567888888889999999998886654
No 477
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=42.72 E-value=84 Score=22.58 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=28.2
Q ss_pred hhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC--CCCeEe-ecCCCChhhh
Q psy7789 139 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GKPFFT-LKSLKEDQNN 192 (197)
Q Consensus 139 ~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~--~~~~~~-~h~~~~~~~R 192 (197)
.+-...+++.....+.++-++-.+...++.+++.|++. |+++.. .||-+..++.
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~ 88 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEE 88 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhH
Confidence 34444555555544444555555556666666666554 555444 4555554443
No 478
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=42.58 E-value=1.1e+02 Score=25.41 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=44.1
Q ss_pred EEEEcCc-hhhHHHHHHHhhcC----------CCCEEEEecccccHHHHHHHHHhCCC--CeEeecCCCChhhhhhhh
Q psy7789 132 EVEYVKQ-EAKIVYLLECLQKT----------EPPVLIFAEKKQDVDAIHEYLLLKGK--PFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 132 ~~~~~~~-~~k~~~l~~~l~~~----------~~~~lIF~~s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~R~~i~ 196 (197)
.+++..+ +.+...|-.+|... .+++.|.+++.+++++..+.|.+..+ ++.++. .++++++|+
T Consensus 161 ~~~~~ns~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~~---~~~~~~~ie 235 (393)
T PRK15327 161 TLWILNSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVIN---ENEENKRVS 235 (393)
T ss_pred eeeecCchHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEec---hHHHHHHHH
Confidence 3344444 44888999888743 24689999999999999999988765 555543 566666664
No 479
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=42.58 E-value=53 Score=30.17 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=36.7
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhc----CCcEEEeCchHHHHHHhcCCccCCCccEEE
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKK----GCHMMVATPGRLMDMLDKKMVSLDVCRYLC 63 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~----~~~Ili~TP~~l~~~l~~~~~~l~~l~~vV 63 (197)
+.++.+..++|+.+.++|.+.+.. ...|||+|. ... ..+++.++++||
T Consensus 237 ~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAE-rsLtIp~V~~VI 288 (812)
T PRK11664 237 ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAE-TSLTIEGIRLVV 288 (812)
T ss_pred cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHH-hcccccCceEEE
Confidence 347899999999998888877753 368999994 444 556778888776
No 480
>KOG0389|consensus
Probab=42.52 E-value=60 Score=29.64 Aligned_cols=58 Identities=28% Similarity=0.285 Sum_probs=44.6
Q ss_pred hhHHHHHHHhh---cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 140 AKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 140 ~k~~~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.|...|..+|. ..+.++|||..=-..-.-|-..|.-.|++...+-|..+-.+|+.+++
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId 821 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLID 821 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHH
Confidence 35566666654 45568999997666666666677888999999999999999988753
No 481
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=42.42 E-value=64 Score=22.15 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=26.1
Q ss_pred hhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHH
Q psy7789 139 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL 173 (197)
Q Consensus 139 ~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L 173 (197)
++....+..+++..++|+++||.|=+++-.++.++
T Consensus 72 ~~~v~~f~~~~~~~~~pvL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 72 PDDVETFRAAIGAAEGPVLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHH
Confidence 34567777778777789999998877777766543
No 482
>KOG0996|consensus
Probab=42.37 E-value=28 Score=32.89 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=55.5
Q ss_pred HHHHhcCCcEEEeCchHHHHHHhc---C--C-------ccCCC---ccEEEeehhhhhhcCCCHHHHHHHHhhccCCceE
Q psy7789 28 LDVIKKGCHMMVATPGRLMDMLDK---K--M-------VSLDV---CRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92 (197)
Q Consensus 28 ~~~l~~~~~Ili~TP~~l~~~l~~---~--~-------~~l~~---l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~ 92 (197)
.+.++.|.-.-|..|-+=+..+.+ + . +.|.+ --+-|+||.|.-++..-...+..-++--..++|+
T Consensus 1172 lDPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQF 1251 (1293)
T KOG0996|consen 1172 LDPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQF 1251 (1293)
T ss_pred CCCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeE
Confidence 344455667777778776665532 1 1 11222 2378999999999876666677666666789999
Q ss_pred EEEeecCChhHHHHHHHhcC
Q psy7789 93 LLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 93 i~~SAT~~~~~~~~~~~~~~ 112 (197)
|+.|=. .++-+...+++.
T Consensus 1252 IIISLR--nnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1252 IIISLR--NNMFELANRLVG 1269 (1293)
T ss_pred EEEEeh--hhHHHHHhhhee
Confidence 999865 667777766653
No 483
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=42.32 E-value=31 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
..-+++++||...-++......+..+++.+....++++.|-.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~ 228 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK 228 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456899999999888766677777777776666777887776
No 484
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=42.29 E-value=32 Score=25.47 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCCccEEEeehhhhhhcCCCHH-HHHHHHhhccC--CceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEE-DVRTIFSFFRG--QRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~-~i~~i~~~~~~--~~q~i~~SAT 98 (197)
..+.+++++||.-.-++..... .+..++..+.. ..++++.|--
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 3678899999999888876666 77777777654 4566666553
No 485
>KOG0388|consensus
Probab=42.29 E-value=46 Score=30.12 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=53.7
Q ss_pred ccccCCCCeeEEEEEcCCChHHhHHH-H--------hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCC
Q psy7789 5 FISALPIPLRTCLAIGGVPMNQSLDV-I--------KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGF 75 (197)
Q Consensus 5 ~~~~~~~~i~~~~~~gg~~~~~~~~~-l--------~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~ 75 (197)
|.+.+| .++|...-|+.+-+...+. | ..+.||+|+|=..+..- .+.+.--...|.|+|||..+-.. .
T Consensus 636 isrFlP-~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKSS-s 711 (1185)
T KOG0388|consen 636 ISRFLP-SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKSS-S 711 (1185)
T ss_pred HHHhCc-cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhhh-h
Confidence 344455 6888888888765444332 2 13589999986444321 11122233459999999988543 4
Q ss_pred HHHHHHHHhhccCCceEEEEeec-CChhHHH
Q psy7789 76 EEDVRTIFSFFRGQRQTLLFSAT-MPKKIQN 105 (197)
Q Consensus 76 ~~~i~~i~~~~~~~~q~i~~SAT-~~~~~~~ 105 (197)
...++.++..- -+-.++++.| +...+++
T Consensus 712 S~RWKtLLsF~--cRNRLLLTGTPIQNsMqE 740 (1185)
T KOG0388|consen 712 SSRWKTLLSFK--CRNRLLLTGTPIQNSMQE 740 (1185)
T ss_pred hhHHHHHhhhh--ccceeeecCCccchHHHH
Confidence 44566655442 2334555565 4444444
No 486
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=42.27 E-value=74 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCC--CCEEEEeccccc-----------HHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 142 IVYLLECLQKTE--PPVLIFAEKKQD-----------VDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 142 ~~~l~~~l~~~~--~~~lIF~~s~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
...+.+-+.... .+++||+++-.+ +..+|++|+.+|.++..+.-+|+.-
T Consensus 112 v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 112 VAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 334444443332 478888877544 6788999999999999888777654
No 487
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.77 E-value=46 Score=27.68 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCEEEEecccccHHHHHHHHHh----CCCCeEeecCCCChhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLL----KGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~R 192 (197)
+++||-++|++-|..+++.+.. .|+++..++|+.+.+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 126 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQ 126 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH
Confidence 4799999999999988776543 47889999998876554
No 488
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=41.76 E-value=65 Score=20.12 Aligned_cols=28 Identities=14% Similarity=-0.088 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 164 QDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
..|..+++.|++.|+++....++.+...
T Consensus 16 ~~a~~l~~~L~~~gi~v~~d~~~~~~~k 43 (94)
T PF03129_consen 16 EYAQELANKLRKAGIRVELDDSDKSLGK 43 (94)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSSSTHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhH
Confidence 4466666667777766666655555444
No 489
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=41.70 E-value=67 Score=18.25 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=10.2
Q ss_pred cccccHHHHHHHHHhCCCCeE
Q psy7789 161 EKKQDVDAIHEYLLLKGKPFF 181 (197)
Q Consensus 161 ~s~~~~~~l~~~L~~~~~~~~ 181 (197)
++...|..+...|.+.+++..
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~ 28 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFE 28 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEE
Confidence 334455555555555554433
No 490
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=41.34 E-value=81 Score=27.22 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCEEEEeccccc-----------HHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 154 PPVLIFAEKKQD-----------VDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 154 ~~~lIF~~s~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.+++|+++|-.+ +..+|++++.+|.+|..+.=+|+.-.
T Consensus 219 ~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A 267 (502)
T PRK09281 219 EYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQA 267 (502)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence 479999988766 88999999999999999988877653
No 491
>KOG0388|consensus
Probab=41.23 E-value=49 Score=30.00 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
++.|+.-|+..+.++|+|+.--+...-+-++|..+||.-..+.|.....+|..+
T Consensus 1033 LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~ 1086 (1185)
T KOG0388|consen 1033 LDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDV 1086 (1185)
T ss_pred HHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHH
Confidence 455555556667799999999999999999999999999999999998888765
No 492
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=41.15 E-value=55 Score=25.68 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++++..+.+..|||.+...+..+.+.|++.|++
T Consensus 223 ~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~ 260 (327)
T PRK10423 223 FDAMQQLLALPLRPQAVFTGNDAMAVGVYQALYQAGLS 260 (327)
T ss_pred HHHHHHHhcCCCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34556666666567899999999999999999998864
No 493
>KOG0340|consensus
Probab=41.11 E-value=34 Score=28.11 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=31.7
Q ss_pred EEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 156 VLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 156 ~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
++||++|++-+-.+++.|... +.++..+.|+|+.=..
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~q 118 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQ 118 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhh
Confidence 899999999999999998755 6789999999876443
No 494
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=40.72 E-value=69 Score=25.67 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=34.4
Q ss_pred CchhhHHHHHHHhhc-CCCCEEEEeccc-ccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 137 KQEAKIVYLLECLQK-TEPPVLIFAEKK-QDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~-~~~~~lIF~~s~-~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
+..+.+..++.-+-- ...+++|||.+- ..+-.++-.|+..|+ ++..+.||+..
T Consensus 86 p~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~ 141 (320)
T PLN02723 86 PSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPK 141 (320)
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHH
Confidence 344445555444432 234799999654 345666778999998 58899998753
No 495
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=40.70 E-value=93 Score=24.27 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=34.6
Q ss_pred CCcEEEeCchH-------------HHHHHhc--CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 34 GCHMMVATPGR-------------LMDMLDK--KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 34 ~~~Ili~TP~~-------------l~~~l~~--~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
.||+.+-.|+. +..+... ..-..+..+.+|||+||.|-.. ....+.+++.-=|++.-+++.|.
T Consensus 50 HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~-AANALLKtLEEPP~~t~fILit~ 127 (263)
T PRK06581 50 NPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLN-AANSCLKILEDAPKNSYIFLITS 127 (263)
T ss_pred CCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHH-HHHHHHHhhcCCCCCeEEEEEeC
Confidence 48999888763 1111111 1112478899999999998442 33344444444233334444443
No 496
>KOG0338|consensus
Probab=40.53 E-value=77 Score=27.55 Aligned_cols=42 Identities=7% Similarity=-0.049 Sum_probs=35.5
Q ss_pred CEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhhhhhh
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R~~i~ 196 (197)
++||-|+|++-+..++.-.++. .+.+...-|||+-...++++
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~L 299 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVL 299 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHH
Confidence 6999999999988888876654 67888999999998888765
No 497
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=40.46 E-value=35 Score=28.88 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=21.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
.+-+.+||||+|.+... ....+...+..-+....+|+.
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEE
Confidence 56789999999998532 122333334443334444443
No 498
>KOG2036|consensus
Probab=40.45 E-value=38 Score=30.51 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
+...+++|||||-.+ =.+.+..++ .+-+++|+.|++
T Consensus 377 l~q~eLlVIDEAAAI----PLplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 377 LGQAELLVIDEAAAI----PLPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred ccCCcEEEechhhcC----CHHHHHHhh-----cceeEEEeeccc
Confidence 677889999999987 344555543 455899999986
No 499
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=40.42 E-value=31 Score=25.77 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=30.4
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..+.+++||...=++......+...++.+....+++++|
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 357999999988887767777777777776667777777
No 500
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=40.35 E-value=74 Score=29.91 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=22.5
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeec
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSAT 98 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT 98 (197)
.+.+||+||+|.|... ..+.+..+++... ...+++++..+
T Consensus 869 ~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 869 NVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred cceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEec
Confidence 4568999999999764 2333444444321 24455544333
Done!