Query psy7789
Match_columns 197
No_of_seqs 112 out of 1146
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 18:53:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.6E-32 2.3E-36 221.8 21.7 186 11-196 156-343 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.3E-29 1.5E-33 203.2 22.1 186 11-196 128-319 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 6.6E-29 2.3E-33 201.9 18.1 186 11-196 132-319 (410)
4 3eiq_A Eukaryotic initiation f 100.0 9.4E-28 3.2E-32 195.1 17.9 186 11-196 135-323 (414)
5 1xti_A Probable ATP-dependent 100.0 8.3E-27 2.9E-31 188.2 20.6 185 12-196 105-293 (391)
6 1hv8_A Putative ATP-dependent 100.0 2.8E-26 9.6E-31 183.3 22.1 181 11-196 101-281 (367)
7 1s2m_A Putative ATP-dependent 99.9 9.5E-27 3.3E-31 188.6 18.4 185 11-196 116-301 (400)
8 1fuu_A Yeast initiation factor 99.9 3.3E-27 1.1E-31 190.6 13.4 186 11-197 116-303 (394)
9 3fht_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 182.7 17.1 182 12-196 124-309 (412)
10 3pey_A ATP-dependent RNA helic 99.9 6.5E-25 2.2E-29 176.9 18.6 182 11-196 102-286 (395)
11 3sqw_A ATP-dependent RNA helic 99.9 3.6E-25 1.2E-29 187.7 17.4 185 12-196 127-334 (579)
12 3i5x_A ATP-dependent RNA helic 99.9 7.9E-25 2.7E-29 184.8 17.8 185 12-196 178-385 (563)
13 3fmp_B ATP-dependent RNA helic 99.9 7.6E-26 2.6E-30 187.7 9.6 183 12-197 191-377 (479)
14 2z0m_A 337AA long hypothetical 99.9 2.2E-23 7.4E-28 164.8 18.4 176 11-196 83-259 (337)
15 3fho_A ATP-dependent RNA helic 99.9 6.5E-24 2.2E-28 177.4 14.4 163 34-196 235-400 (508)
16 2v1x_A ATP-dependent DNA helic 99.9 3.9E-23 1.3E-27 175.2 16.4 184 12-196 108-310 (591)
17 3oiy_A Reverse gyrase helicase 99.9 3.6E-23 1.2E-27 168.6 11.0 167 11-186 90-286 (414)
18 1oyw_A RECQ helicase, ATP-depe 99.9 3.6E-22 1.2E-26 167.3 15.4 180 11-196 88-279 (523)
19 4ddu_A Reverse gyrase; topoiso 99.9 2.8E-22 9.6E-27 179.8 13.4 167 10-185 146-342 (1104)
20 3fe2_A Probable ATP-dependent 99.9 1.6E-21 5.3E-26 148.3 13.5 111 12-122 130-240 (242)
21 3l9o_A ATP-dependent RNA helic 99.9 6.6E-22 2.2E-26 177.5 12.0 174 14-196 253-523 (1108)
22 2xgj_A ATP-dependent RNA helic 99.9 1.8E-20 6.3E-25 166.9 17.7 174 14-196 155-425 (1010)
23 1wrb_A DJVLGB; RNA helicase, D 99.9 1.2E-20 4.1E-25 144.2 13.5 122 11-132 127-252 (253)
24 3iuy_A Probable ATP-dependent 99.8 8.1E-21 2.8E-25 143.0 12.0 110 10-119 119-228 (228)
25 2va8_A SSO2462, SKI2-type heli 99.8 3.5E-20 1.2E-24 160.5 17.5 175 11-196 101-331 (715)
26 1tf5_A Preprotein translocase 99.8 2.6E-21 8.9E-26 166.6 9.1 184 11-196 151-475 (844)
27 2zj8_A DNA helicase, putative 99.8 4.2E-21 1.4E-25 166.5 10.5 177 11-197 94-314 (720)
28 2p6r_A Afuhel308 helicase; pro 99.8 6.5E-21 2.2E-25 164.8 11.6 178 10-197 93-316 (702)
29 4a4z_A Antiviral helicase SKI2 99.8 1.4E-20 4.8E-25 167.5 13.7 175 12-196 108-418 (997)
30 2fsf_A Preprotein translocase 99.8 7.7E-21 2.6E-25 163.5 10.8 184 11-196 142-484 (853)
31 1gku_B Reverse gyrase, TOP-RG; 99.8 1.1E-21 3.7E-26 175.8 4.6 164 14-189 133-310 (1054)
32 3ber_A Probable ATP-dependent 99.8 1.3E-19 4.5E-24 138.3 13.4 109 12-120 139-248 (249)
33 4a2p_A RIG-I, retinoic acid in 99.8 1.1E-19 3.8E-24 152.6 13.9 89 12-100 83-177 (556)
34 1wp9_A ATP-dependent RNA helic 99.8 4.5E-19 1.5E-23 145.8 17.0 89 12-101 80-168 (494)
35 1vec_A ATP-dependent RNA helic 99.8 2.2E-19 7.5E-24 132.9 13.2 106 12-117 100-205 (206)
36 2ykg_A Probable ATP-dependent 99.8 2.7E-20 9.2E-25 160.6 9.2 90 11-100 88-184 (696)
37 2gxq_A Heat resistant RNA depe 99.8 2.2E-19 7.4E-24 133.0 12.7 109 12-120 98-206 (207)
38 3bor_A Human initiation factor 99.8 1.2E-19 4.1E-24 137.5 11.4 110 11-120 125-235 (237)
39 1q0u_A Bstdead; DEAD protein, 99.8 4.8E-20 1.7E-24 137.9 9.0 110 12-121 104-213 (219)
40 1nkt_A Preprotein translocase 99.8 3.6E-20 1.2E-24 159.8 8.7 184 11-196 179-503 (922)
41 4f92_B U5 small nuclear ribonu 99.8 3.7E-19 1.3E-23 164.9 15.0 183 10-197 160-398 (1724)
42 3tbk_A RIG-I helicase domain; 99.8 9.6E-19 3.3E-23 146.7 16.3 90 12-101 80-176 (555)
43 2oxc_A Probable ATP-dependent 99.8 2E-19 6.9E-24 135.6 10.9 107 12-119 121-228 (230)
44 1qde_A EIF4A, translation init 99.8 2.6E-19 9.1E-24 134.2 11.0 112 11-123 109-220 (224)
45 3ly5_A ATP-dependent RNA helic 99.8 5E-19 1.7E-23 136.1 12.5 105 11-115 153-258 (262)
46 2pl3_A Probable ATP-dependent 99.8 7.2E-19 2.5E-23 132.9 13.1 110 11-121 124-234 (236)
47 3fmo_B ATP-dependent RNA helic 99.8 2.9E-19 9.8E-24 140.0 10.1 107 12-121 191-299 (300)
48 4f92_B U5 small nuclear ribonu 99.8 1.2E-18 4.2E-23 161.5 14.3 182 11-197 1000-1233(1724)
49 4a2q_A RIG-I, retinoic acid in 99.8 2.1E-18 7.3E-23 151.0 14.2 89 12-100 324-418 (797)
50 1t6n_A Probable ATP-dependent 99.8 1.2E-18 4E-23 130.4 10.7 107 12-118 111-219 (220)
51 4gl2_A Interferon-induced heli 99.8 1.7E-19 5.9E-24 155.7 6.8 92 10-101 82-193 (699)
52 2eyq_A TRCF, transcription-rep 99.8 8.1E-18 2.8E-22 151.8 16.7 174 10-196 678-857 (1151)
53 4a2w_A RIG-I, retinoic acid in 99.8 6.6E-18 2.3E-22 150.0 13.6 89 12-100 324-418 (936)
54 3o8b_A HCV NS3 protease/helica 99.7 4.2E-18 1.4E-22 144.9 8.6 154 12-194 282-437 (666)
55 3dkp_A Probable ATP-dependent 99.7 9.7E-18 3.3E-22 127.4 7.6 112 12-123 126-244 (245)
56 2xau_A PRE-mRNA-splicing facto 99.7 8.8E-17 3E-21 140.0 13.7 156 34-197 185-358 (773)
57 1gm5_A RECG; helicase, replica 99.7 6.1E-17 2.1E-21 140.7 9.1 171 11-196 444-632 (780)
58 2oca_A DAR protein, ATP-depend 99.6 1E-16 3.6E-21 133.7 5.2 174 12-196 185-390 (510)
59 1yks_A Genome polyprotein [con 99.6 9.1E-17 3.1E-21 132.0 -1.3 137 38-196 71-216 (440)
60 2whx_A Serine protease/ntpase/ 99.6 9.4E-16 3.2E-20 130.6 4.5 137 37-196 257-394 (618)
61 2v6i_A RNA helicase; membrane, 99.6 7E-15 2.4E-19 120.5 8.5 134 34-186 70-204 (431)
62 2jlq_A Serine protease subunit 99.6 4.7E-15 1.6E-19 122.1 7.4 138 34-190 87-225 (451)
63 3rc3_A ATP-dependent RNA helic 99.5 2.1E-14 7.3E-19 123.1 10.5 160 12-196 203-363 (677)
64 2fwr_A DNA repair protein RAD2 99.5 1.4E-15 4.9E-20 125.7 1.1 163 12-196 157-387 (472)
65 2wv9_A Flavivirin protease NS2 99.5 2.5E-15 8.6E-20 128.9 1.6 120 55-196 329-449 (673)
66 3h1t_A Type I site-specific re 99.5 5.8E-14 2E-18 119.1 7.1 161 33-196 273-489 (590)
67 2p6n_A ATP-dependent RNA helic 99.4 2E-13 7E-18 99.9 7.7 89 108-196 9-97 (191)
68 2d7d_A Uvrabc system protein B 99.4 1.4E-13 4.8E-18 118.1 7.4 142 40-196 320-488 (661)
69 2z83_A Helicase/nucleoside tri 99.4 3.7E-14 1.3E-18 117.1 3.2 128 36-186 91-223 (459)
70 1c4o_A DNA nucleotide excision 99.4 1.2E-12 4.1E-17 112.4 9.6 140 40-196 314-482 (664)
71 1z63_A Helicase of the SNF2/RA 99.4 3E-12 1E-16 106.4 11.5 57 140-196 325-385 (500)
72 3llm_A ATP-dependent RNA helic 99.3 1.7E-12 5.9E-17 97.9 6.1 76 33-114 154-231 (235)
73 3b6e_A Interferon-induced heli 99.3 2.1E-12 7.2E-17 95.6 5.3 88 11-98 109-216 (216)
74 3dmq_A RNA polymerase-associat 99.2 8.8E-12 3E-16 111.2 7.2 59 138-196 487-547 (968)
75 2hjv_A ATP-dependent RNA helic 99.2 5E-11 1.7E-15 84.9 8.0 73 124-196 5-78 (163)
76 1t5i_A C_terminal domain of A 99.2 6.2E-11 2.1E-15 85.2 8.2 71 126-196 3-74 (172)
77 2jgn_A DBX, DDX3, ATP-dependen 99.2 5.5E-11 1.9E-15 86.5 7.6 76 121-196 12-89 (185)
78 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 1E-10 3.5E-15 104.5 10.4 78 20-101 360-440 (1038)
79 2rb4_A ATP-dependent RNA helic 99.2 9.4E-11 3.2E-15 84.4 8.2 72 125-196 4-77 (175)
80 2ipc_A Preprotein translocase 99.2 2.4E-09 8.1E-14 93.1 17.7 82 91-174 380-464 (997)
81 3mwy_W Chromo domain-containin 99.1 4.4E-10 1.5E-14 98.5 13.1 56 141-196 557-615 (800)
82 1fuk_A Eukaryotic initiation f 99.1 1.7E-10 5.9E-15 82.2 7.8 70 127-196 2-73 (165)
83 1z3i_X Similar to RAD54-like; 99.1 1.5E-09 5.2E-14 93.0 13.2 44 153-196 416-459 (644)
84 2yjt_D ATP-dependent RNA helic 98.4 1.9E-10 6.4E-15 82.4 0.0 71 127-197 2-74 (170)
85 1rif_A DAR protein, DNA helica 98.9 1.1E-09 3.7E-14 84.6 4.1 81 12-102 185-265 (282)
86 3i32_A Heat resistant RNA depe 98.9 3.5E-09 1.2E-13 82.5 7.0 68 129-196 3-71 (300)
87 3eaq_A Heat resistant RNA depe 98.9 3.4E-09 1.2E-13 78.6 6.0 68 129-196 6-74 (212)
88 3jux_A Protein translocase sub 98.7 5E-08 1.7E-12 83.5 10.3 103 90-195 410-516 (822)
89 2fz4_A DNA repair protein RAD2 98.5 1.7E-07 5.7E-12 70.6 5.0 73 12-101 157-230 (237)
90 1z5z_A Helicase of the SNF2/RA 98.0 8.4E-06 2.9E-10 62.5 5.2 61 136-196 92-156 (271)
91 3crv_A XPD/RAD3 related DNA he 96.8 0.0014 4.6E-08 55.2 4.8 42 31-72 145-187 (551)
92 2vl7_A XPD; helicase, unknown 95.5 0.0044 1.5E-07 51.9 1.6 42 143-187 374-415 (540)
93 3gk5_A Uncharacterized rhodane 93.5 0.15 5.1E-06 32.8 5.2 37 154-190 56-92 (108)
94 4a15_A XPD helicase, ATP-depen 93.0 0.15 5.1E-06 43.5 5.7 100 90-195 376-487 (620)
95 1wv9_A Rhodanese homolog TT165 92.8 0.1 3.5E-06 32.6 3.4 36 154-189 54-89 (94)
96 3eme_A Rhodanese-like domain p 92.1 0.11 3.8E-06 33.0 2.9 36 154-189 57-92 (103)
97 3foj_A Uncharacterized protein 91.9 0.11 3.9E-06 32.8 2.8 36 154-189 57-92 (100)
98 3g5j_A Putative ATP/GTP bindin 91.5 0.26 8.9E-06 32.6 4.4 39 154-192 90-129 (134)
99 3iwh_A Rhodanese-like domain p 91.5 0.14 4.8E-06 32.8 2.9 36 154-189 57-92 (103)
100 3crv_A XPD/RAD3 related DNA he 91.1 2.1 7E-05 35.8 10.4 101 85-192 310-429 (551)
101 2jtq_A Phage shock protein E; 91.1 0.65 2.2E-05 28.1 5.6 37 153-190 41-78 (85)
102 2vl7_A XPD; helicase, unknown 90.8 0.031 1E-06 46.8 -1.0 39 33-71 143-188 (540)
103 3hix_A ALR3790 protein; rhodan 90.1 0.26 8.8E-06 31.5 3.2 38 153-190 52-90 (106)
104 3flh_A Uncharacterized protein 90.1 0.37 1.3E-05 31.7 4.1 36 154-189 72-109 (124)
105 2fsx_A RV0390, COG0607: rhodan 89.8 0.51 1.7E-05 32.0 4.7 36 153-188 80-116 (148)
106 2k0z_A Uncharacterized protein 89.6 1.2 4.1E-05 28.5 6.2 39 152-190 55-93 (110)
107 1qxn_A SUD, sulfide dehydrogen 89.3 0.36 1.2E-05 32.4 3.6 38 153-190 82-120 (137)
108 3jux_A Protein translocase sub 88.8 0.68 2.3E-05 40.3 5.6 37 35-71 215-258 (822)
109 1gmx_A GLPE protein; transfera 88.6 0.34 1.1E-05 31.0 3.0 37 153-189 58-95 (108)
110 1tq1_A AT5G66040, senescence-a 88.4 0.36 1.2E-05 32.0 3.0 37 153-189 82-119 (129)
111 3nhv_A BH2092 protein; alpha-b 88.3 0.33 1.1E-05 32.9 2.9 37 154-190 73-111 (144)
112 1w36_D RECD, exodeoxyribonucle 88.0 0.59 2E-05 39.7 4.8 37 58-98 262-298 (608)
113 2hhg_A Hypothetical protein RP 86.6 0.4 1.4E-05 32.1 2.5 37 153-189 86-123 (139)
114 3d1p_A Putative thiosulfate su 86.1 0.54 1.8E-05 31.5 2.9 36 154-189 92-128 (139)
115 1vee_A Proline-rich protein fa 85.8 0.74 2.5E-05 30.6 3.5 36 153-188 74-110 (134)
116 3ilm_A ALR3790 protein; rhodan 85.3 0.59 2E-05 31.6 2.8 36 154-189 57-93 (141)
117 1urh_A 3-mercaptopyruvate sulf 83.8 2.7 9.3E-05 31.5 6.3 38 153-190 230-268 (280)
118 3hgt_A HDA1 complex subunit 3; 83.7 1.5 5E-05 34.2 4.7 54 137-190 106-162 (328)
119 3tg1_B Dual specificity protei 83.6 0.89 3.1E-05 31.2 3.2 37 153-189 93-138 (158)
120 1urh_A 3-mercaptopyruvate sulf 81.4 2 6.7E-05 32.3 4.6 51 139-189 71-124 (280)
121 2z4s_A Chromosomal replication 81.1 5.3 0.00018 32.3 7.4 85 13-97 130-235 (440)
122 2j6p_A SB(V)-AS(V) reductase; 79.8 1.8 6.3E-05 29.4 3.7 48 142-189 56-112 (152)
123 2ouc_A Dual specificity protei 79.0 1.9 6.4E-05 28.5 3.4 36 154-189 84-128 (142)
124 2kjq_A DNAA-related protein; s 78.4 0.65 2.2E-05 31.6 1.0 44 56-100 81-125 (149)
125 1e0c_A Rhodanese, sulfurtransf 78.3 2.9 0.0001 31.2 4.7 51 139-189 66-119 (271)
126 4f67_A UPF0176 protein LPG2838 77.4 1.6 5.4E-05 33.0 2.9 40 152-191 180-220 (265)
127 3oiy_A Reverse gyrase helicase 76.4 4.3 0.00015 32.1 5.4 41 152-192 63-106 (414)
128 2chg_A Replication factor C sm 75.0 5.5 0.00019 27.9 5.2 39 57-96 101-139 (226)
129 1e0c_A Rhodanese, sulfurtransf 75.0 2.7 9.3E-05 31.4 3.7 37 153-189 223-260 (271)
130 1sxj_E Activator 1 40 kDa subu 74.6 2 6.9E-05 33.2 3.0 42 57-99 133-174 (354)
131 1t6n_A Probable ATP-dependent 74.1 7.8 0.00027 27.5 5.9 40 154-193 83-127 (220)
132 1rhs_A Sulfur-substituted rhod 73.9 4.1 0.00014 30.9 4.5 37 153-189 240-277 (296)
133 2p6n_A ATP-dependent RNA helic 73.3 10 0.00035 26.7 6.2 47 12-64 78-128 (191)
134 4a15_A XPD helicase, ATP-depen 73.2 1.2 4.2E-05 37.8 1.5 41 32-72 173-218 (620)
135 2eg4_A Probable thiosulfate su 73.1 1.9 6.5E-05 31.4 2.3 37 153-189 184-220 (230)
136 1uar_A Rhodanese; sulfurtransf 72.6 3.9 0.00014 30.7 4.1 37 153-189 233-271 (285)
137 3hzu_A Thiosulfate sulfurtrans 72.4 6.3 0.00021 30.3 5.3 37 153-189 111-149 (318)
138 1g5t_A COB(I)alamin adenosyltr 71.9 8.5 0.00029 27.5 5.5 51 57-107 119-171 (196)
139 3e1s_A Exodeoxyribonuclease V, 71.8 4.7 0.00016 33.9 4.7 38 57-98 278-315 (574)
140 3kta_B Chromosome segregation 71.7 2.2 7.5E-05 29.9 2.3 42 57-98 85-126 (173)
141 1uar_A Rhodanese; sulfurtransf 71.5 4.5 0.00015 30.4 4.2 49 141-189 66-117 (285)
142 3aay_A Putative thiosulfate su 70.8 7 0.00024 29.1 5.1 50 140-189 63-115 (277)
143 2oxc_A Probable ATP-dependent 70.6 6.2 0.00021 28.4 4.7 42 153-194 92-138 (230)
144 2eg4_A Probable thiosulfate su 70.0 8.6 0.00029 27.8 5.3 33 153-186 61-95 (230)
145 2hjv_A ATP-dependent RNA helic 69.9 9 0.00031 26.0 5.2 49 12-66 59-111 (163)
146 3zyw_A Glutaredoxin-3; metal b 68.9 18 0.00063 22.9 6.2 50 144-195 8-63 (111)
147 1yt8_A Thiosulfate sulfurtrans 68.5 7.3 0.00025 32.4 5.1 37 153-189 322-359 (539)
148 1l8q_A Chromosomal replication 68.4 4.7 0.00016 30.8 3.8 87 13-100 37-141 (324)
149 3eaq_A Heat resistant RNA depe 68.2 11 0.00037 26.9 5.5 47 12-64 55-105 (212)
150 2lqo_A Putative glutaredoxin R 68.1 15 0.00051 22.6 5.4 42 154-195 4-46 (92)
151 3tbk_A RIG-I helicase domain; 67.1 9 0.00031 31.2 5.4 40 153-192 52-95 (555)
152 1yt8_A Thiosulfate sulfurtrans 66.6 11 0.00039 31.2 6.0 40 150-189 60-100 (539)
153 2r2a_A Uncharacterized protein 66.3 4.6 0.00016 28.9 3.1 39 59-98 88-132 (199)
154 1a5t_A Delta prime, HOLB; zinc 66.3 11 0.00036 29.1 5.4 40 56-96 106-145 (334)
155 1iqp_A RFCS; clamp loader, ext 66.2 10 0.00035 28.6 5.3 39 57-96 109-147 (327)
156 3aay_A Putative thiosulfate su 66.2 7 0.00024 29.2 4.3 37 153-189 226-264 (277)
157 3u61_B DNA polymerase accessor 66.1 3 0.0001 31.8 2.3 41 57-97 104-144 (324)
158 1wp9_A ATP-dependent RNA helic 65.8 11 0.00037 29.9 5.6 43 152-194 51-97 (494)
159 3ntd_A FAD-dependent pyridine 65.5 4.3 0.00015 33.7 3.2 36 154-189 525-560 (565)
160 2v1x_A ATP-dependent DNA helic 65.5 5.6 0.00019 33.5 3.9 53 142-195 74-126 (591)
161 3fe2_A Probable ATP-dependent 65.4 9.4 0.00032 27.7 4.8 41 153-193 102-146 (242)
162 3bos_A Putative DNA replicatio 64.4 6.2 0.00021 28.2 3.6 66 34-99 80-147 (242)
163 3i2v_A Adenylyltransferase and 64.0 2.9 0.0001 27.0 1.6 36 155-190 74-116 (127)
164 4ag6_A VIRB4 ATPase, type IV s 64.0 6.3 0.00022 31.1 3.8 43 57-99 261-307 (392)
165 1rhs_A Sulfur-substituted rhod 63.9 9.5 0.00033 28.8 4.7 52 138-189 76-132 (296)
166 2b8t_A Thymidine kinase; deoxy 63.8 21 0.00073 25.9 6.3 33 37-70 69-101 (223)
167 2fz4_A DNA repair protein RAD2 63.7 13 0.00046 27.0 5.3 50 139-188 119-169 (237)
168 3ipz_A Monothiol glutaredoxin- 63.4 25 0.00085 22.1 6.3 49 144-194 10-64 (109)
169 4ddu_A Reverse gyrase; topoiso 63.4 14 0.00047 33.8 6.2 41 152-192 120-163 (1104)
170 3te6_A Regulatory protein SIR3 63.3 10 0.00034 29.4 4.7 41 57-100 131-174 (318)
171 1fuk_A Eukaryotic initiation f 63.2 13 0.00045 25.1 4.9 49 12-66 54-106 (165)
172 1njg_A DNA polymerase III subu 62.9 5.8 0.0002 28.1 3.2 39 57-96 125-163 (250)
173 2p65_A Hypothetical protein PF 62.8 4.1 0.00014 27.7 2.3 14 58-71 115-128 (187)
174 3ics_A Coenzyme A-disulfide re 62.8 5.9 0.0002 33.1 3.5 37 154-190 542-578 (588)
175 2gno_A DNA polymerase III, gam 62.4 5.1 0.00017 30.7 2.9 63 34-99 49-121 (305)
176 1d2n_A N-ethylmaleimide-sensit 61.9 19 0.00065 26.5 6.0 46 57-102 123-178 (272)
177 3olh_A MST, 3-mercaptopyruvate 61.8 4.4 0.00015 30.9 2.4 37 153-189 254-291 (302)
178 3upu_A ATP-dependent DNA helic 61.4 12 0.00041 30.3 5.1 39 56-98 126-164 (459)
179 2orw_A Thymidine kinase; TMTK, 61.4 8.3 0.00028 27.0 3.7 37 58-98 76-112 (184)
180 1xti_A Probable ATP-dependent 61.0 19 0.00066 27.8 6.1 41 153-193 76-121 (391)
181 3ec2_A DNA replication protein 60.8 3.6 0.00012 28.4 1.6 68 33-100 66-144 (180)
182 2pl3_A Probable ATP-dependent 60.6 19 0.00067 25.7 5.7 40 153-192 97-140 (236)
183 1okg_A Possible 3-mercaptopyru 60.3 8 0.00027 30.5 3.7 37 153-189 246-283 (373)
184 1u6t_A SH3 domain-binding glut 60.3 4.7 0.00016 26.5 2.0 33 163-195 16-48 (121)
185 1sxj_C Activator 1 40 kDa subu 60.2 13 0.00046 28.5 5.0 39 57-96 109-147 (340)
186 2rb4_A ATP-dependent RNA helic 60.0 18 0.00061 24.7 5.2 48 11-64 57-108 (175)
187 2gxq_A Heat resistant RNA depe 60.0 13 0.00045 25.8 4.6 40 153-192 72-113 (207)
188 2wlr_A Putative thiosulfate su 59.9 8.3 0.00028 30.9 3.8 37 153-189 203-240 (423)
189 3ber_A Probable ATP-dependent 59.7 23 0.00077 25.8 6.0 39 154-192 112-154 (249)
190 1t3k_A Arath CDC25, dual-speci 59.4 7 0.00024 26.5 2.9 37 153-189 85-131 (152)
191 2v1u_A Cell division control p 59.2 12 0.00041 28.8 4.6 29 58-86 130-159 (387)
192 1t1v_A SH3BGRL3, SH3 domain-bi 58.8 27 0.00092 21.0 5.5 40 155-194 3-49 (93)
193 4a2p_A RIG-I, retinoic acid in 58.6 14 0.00048 30.1 5.1 40 153-192 55-98 (556)
194 1okg_A Possible 3-mercaptopyru 58.5 16 0.00053 28.9 5.1 52 138-189 79-133 (373)
195 1t5i_A C_terminal domain of A 58.5 36 0.0012 23.1 6.6 49 12-66 55-107 (172)
196 1oyw_A RECQ helicase, ATP-depe 58.3 13 0.00045 30.7 4.8 51 143-194 56-106 (523)
197 3i32_A Heat resistant RNA depe 57.6 13 0.00045 28.3 4.5 48 11-64 51-102 (300)
198 3hzu_A Thiosulfate sulfurtrans 57.3 5.9 0.0002 30.5 2.4 37 153-189 259-297 (318)
199 2lci_A Protein OR36; structura 57.2 32 0.0011 21.3 6.6 59 133-191 29-89 (134)
200 2oca_A DAR protein, ATP-depend 57.0 10 0.00034 30.9 3.9 51 13-68 372-426 (510)
201 3iuy_A Probable ATP-dependent 57.0 14 0.00049 26.3 4.4 40 153-192 94-136 (228)
202 4a2q_A RIG-I, retinoic acid in 56.8 16 0.00054 31.9 5.3 40 153-192 296-339 (797)
203 3syl_A Protein CBBX; photosynt 56.6 8 0.00027 29.1 3.1 14 59-72 131-144 (309)
204 2yan_A Glutaredoxin-3; oxidore 56.3 32 0.0011 21.1 5.7 48 144-193 9-62 (105)
205 1gm5_A RECG; helicase, replica 56.2 9.4 0.00032 33.4 3.7 43 153-195 417-463 (780)
206 1q0u_A Bstdead; DEAD protein, 56.1 19 0.00066 25.4 5.0 40 153-192 72-119 (219)
207 2wlr_A Putative thiosulfate su 56.1 12 0.00041 30.0 4.1 36 154-189 359-395 (423)
208 2fwr_A DNA repair protein RAD2 55.9 12 0.00041 30.1 4.2 50 140-189 120-170 (472)
209 1jr3_D DNA polymerase III, del 55.9 32 0.0011 26.3 6.5 64 56-120 74-140 (343)
210 2i4i_A ATP-dependent RNA helic 55.9 25 0.00087 27.4 6.0 47 12-64 300-350 (417)
211 1c25_A CDC25A; hydrolase, cell 55.9 7.3 0.00025 26.4 2.5 33 157-189 93-137 (161)
212 1jbk_A CLPB protein; beta barr 55.5 22 0.00077 23.8 5.1 14 58-71 115-128 (195)
213 1sxj_D Activator 1 41 kDa subu 55.4 10 0.00035 29.0 3.6 39 57-96 132-170 (353)
214 3gx8_A Monothiol glutaredoxin- 55.0 39 0.0013 21.7 6.2 50 143-194 7-65 (121)
215 1qde_A EIF4A, translation init 54.4 26 0.00087 24.7 5.4 40 153-192 82-125 (224)
216 2d7d_A Uvrabc system protein B 54.3 77 0.0026 27.0 9.0 54 12-71 469-526 (661)
217 1vec_A ATP-dependent RNA helic 54.0 22 0.00074 24.7 4.9 39 154-192 72-115 (206)
218 3h4m_A Proteasome-activating n 53.9 12 0.0004 27.8 3.6 13 59-71 111-123 (285)
219 1wik_A Thioredoxin-like protei 53.4 38 0.0013 21.0 5.8 41 154-194 15-61 (109)
220 2lnd_A De novo designed protei 53.4 34 0.0012 20.5 5.6 53 138-190 36-90 (112)
221 2qby_A CDC6 homolog 1, cell di 53.2 12 0.00042 28.8 3.7 15 59-73 129-143 (386)
222 2jgn_A DBX, DDX3, ATP-dependen 53.2 10 0.00034 26.5 2.9 47 12-64 70-120 (185)
223 1v5x_A PRA isomerase, phosphor 52.9 38 0.0013 24.2 6.0 52 140-193 40-91 (203)
224 3qmx_A Glutaredoxin A, glutare 52.8 28 0.00094 21.4 4.7 39 155-193 17-56 (99)
225 1sxj_B Activator 1 37 kDa subu 52.6 6.9 0.00024 29.5 2.1 38 58-96 107-144 (323)
226 1jr3_A DNA polymerase III subu 52.5 12 0.0004 28.9 3.5 39 57-96 118-156 (373)
227 1fnn_A CDC6P, cell division co 51.2 6.3 0.00022 30.6 1.8 13 58-70 125-137 (389)
228 3tp9_A Beta-lactamase and rhod 51.1 8.2 0.00028 31.4 2.4 37 154-190 428-465 (474)
229 3h11_A CAsp8 and FADD-like apo 50.8 5.9 0.0002 29.9 1.4 39 154-193 44-82 (272)
230 2ct6_A SH3 domain-binding glut 50.8 43 0.0015 21.0 5.5 41 155-195 9-56 (111)
231 2gk6_A Regulator of nonsense t 50.6 36 0.0012 28.8 6.4 62 25-96 310-371 (624)
232 2zpa_A Uncharacterized protein 50.1 22 0.00075 30.6 4.9 37 56-100 253-289 (671)
233 3olh_A MST, 3-mercaptopyruvate 49.8 27 0.00092 26.5 5.1 53 137-189 90-147 (302)
234 2fsf_A Preprotein translocase 49.5 31 0.0011 30.5 5.8 58 137-194 97-160 (853)
235 2z0m_A 337AA long hypothetical 49.4 41 0.0014 25.1 6.1 40 153-192 56-99 (337)
236 1tf5_A Preprotein translocase 49.2 19 0.00065 31.8 4.5 58 137-194 106-169 (844)
237 2wci_A Glutaredoxin-4; redox-a 49.0 30 0.001 22.9 4.6 52 142-195 25-82 (135)
238 2qby_B CDC6 homolog 3, cell di 48.9 16 0.00054 28.3 3.7 37 61-98 136-173 (384)
239 2wem_A Glutaredoxin-related pr 48.2 52 0.0018 21.1 6.3 50 144-195 12-68 (118)
240 3n70_A Transport activator; si 47.9 12 0.00042 24.7 2.6 37 60-97 78-114 (145)
241 1hzm_A Dual specificity protei 46.9 12 0.00042 24.9 2.5 38 153-190 92-139 (154)
242 3dmn_A Putative DNA helicase; 46.7 66 0.0023 21.9 6.5 47 139-185 44-93 (174)
243 1nsj_A PRAI, phosphoribosyl an 46.6 40 0.0014 24.1 5.3 51 140-192 41-91 (205)
244 2wul_A Glutaredoxin related pr 46.6 56 0.0019 21.1 5.7 51 143-195 11-68 (118)
245 1qb0_A Protein (M-phase induce 46.2 17 0.00059 26.0 3.3 36 154-189 110-159 (211)
246 2chq_A Replication factor C sm 46.0 10 0.00035 28.5 2.1 15 57-71 101-115 (319)
247 3i5x_A ATP-dependent RNA helic 46.0 11 0.00039 31.1 2.6 52 10-67 364-419 (563)
248 2h54_A Caspase-1; allosteric s 45.9 23 0.00078 24.8 3.8 36 155-191 45-91 (178)
249 1wrb_A DJVLGB; RNA helicase, D 45.5 30 0.001 25.0 4.6 40 153-192 100-143 (253)
250 2ykg_A Probable ATP-dependent 44.9 29 0.00098 29.4 5.0 38 154-191 62-103 (696)
251 3rc3_A ATP-dependent RNA helic 44.4 27 0.00093 30.0 4.7 52 12-70 344-401 (677)
252 2dko_A Caspase-3; low barrier 44.2 21 0.00072 24.1 3.3 28 163-191 40-67 (146)
253 2qen_A Walker-type ATPase; unk 44.0 18 0.00061 27.4 3.3 36 60-96 130-171 (350)
254 2fna_A Conserved hypothetical 44.0 41 0.0014 25.4 5.4 37 60-97 139-178 (357)
255 3pey_A ATP-dependent RNA helic 44.0 1E+02 0.0036 23.4 8.2 52 12-69 267-322 (395)
256 3sqw_A ATP-dependent RNA helic 43.2 13 0.00045 30.9 2.6 52 10-67 313-368 (579)
257 3auy_A DNA double-strand break 43.2 18 0.00062 28.3 3.2 41 57-97 303-344 (371)
258 3h11_B Caspase-8; cell death, 43.1 22 0.00075 26.7 3.5 30 162-192 47-76 (271)
259 3fht_A ATP-dependent RNA helic 43.0 28 0.00095 27.0 4.4 47 12-64 290-340 (412)
260 4a2w_A RIG-I, retinoic acid in 42.5 34 0.0011 30.6 5.2 40 153-192 296-339 (936)
261 1fuu_A Yeast initiation factor 42.2 72 0.0024 24.4 6.6 41 153-193 89-133 (394)
262 3e4c_A Caspase-1; zymogen, inf 42.0 23 0.00078 27.1 3.5 38 155-193 62-110 (302)
263 2db3_A ATP-dependent RNA helic 41.9 28 0.00094 27.8 4.2 41 153-193 129-173 (434)
264 4aby_A DNA repair protein RECN 41.8 13 0.00044 29.4 2.2 39 60-98 317-355 (415)
265 2wjy_A Regulator of nonsense t 41.8 42 0.0014 29.5 5.6 52 35-96 496-547 (800)
266 1nkt_A Preprotein translocase 41.5 29 0.001 30.9 4.5 57 138-194 135-197 (922)
267 3qk7_A Transcriptional regulat 41.4 33 0.0011 25.3 4.4 40 140-179 173-212 (294)
268 3bor_A Human initiation factor 39.5 51 0.0017 23.5 5.0 39 153-191 98-140 (237)
269 1gku_B Reverse gyrase, TOP-RG; 39.3 37 0.0013 30.8 5.0 42 152-193 98-147 (1054)
270 3jx9_A Putative phosphoheptose 39.2 37 0.0013 23.5 4.0 35 155-189 80-117 (170)
271 3op3_A M-phase inducer phospha 39.2 19 0.00064 26.1 2.5 34 156-189 127-172 (216)
272 3eie_A Vacuolar protein sortin 38.9 42 0.0014 25.5 4.7 15 58-72 110-124 (322)
273 2xzl_A ATP-dependent helicase 38.8 69 0.0023 28.1 6.4 61 25-96 489-549 (802)
274 3miz_A Putative transcriptiona 38.7 35 0.0012 25.2 4.2 37 143-179 186-222 (301)
275 4fn4_A Short chain dehydrogena 38.6 69 0.0023 23.6 5.7 48 138-185 40-92 (254)
276 3g85_A Transcriptional regulat 38.3 37 0.0013 24.8 4.2 39 141-179 175-213 (289)
277 3co5_A Putative two-component 38.3 19 0.00067 23.6 2.4 38 60-98 77-115 (143)
278 1w5s_A Origin recognition comp 38.0 20 0.0007 27.9 2.8 14 59-72 139-152 (412)
279 3hjh_A Transcription-repair-co 38.0 24 0.00083 28.9 3.3 40 142-181 371-410 (483)
280 2i3b_A HCR-ntpase, human cance 38.0 13 0.00044 26.2 1.5 42 56-100 103-146 (189)
281 3gv0_A Transcriptional regulat 37.7 37 0.0013 24.9 4.1 38 142-179 176-213 (288)
282 3k9c_A Transcriptional regulat 37.7 40 0.0014 24.8 4.3 38 142-179 173-210 (289)
283 3hu3_A Transitional endoplasmi 37.6 28 0.00096 28.5 3.6 43 59-101 298-350 (489)
284 3gr1_A Protein PRGH; type III 37.3 28 0.00094 25.5 3.1 39 154-195 27-67 (227)
285 3ly5_A ATP-dependent RNA helic 37.0 78 0.0027 23.1 5.8 40 153-192 126-169 (262)
286 3ksm_A ABC-type sugar transpor 37.0 1.1E+02 0.0038 21.8 11.4 38 141-178 174-211 (276)
287 3r2u_A Metallo-beta-lactamase 37.0 7.2 0.00025 31.8 0.0 36 154-189 426-462 (466)
288 3l6u_A ABC-type sugar transpor 36.9 1.2E+02 0.004 22.0 12.9 44 140-183 181-225 (293)
289 3p45_A Caspase-6; protease, hu 36.9 38 0.0013 23.8 3.7 39 154-193 45-97 (179)
290 3k4h_A Putative transcriptiona 36.6 42 0.0014 24.5 4.3 40 140-179 178-217 (292)
291 1e69_A Chromosome segregation 36.5 19 0.00064 27.6 2.3 42 57-98 240-281 (322)
292 1xx6_A Thymidine kinase; NESG, 35.9 40 0.0014 23.7 3.8 13 58-70 81-93 (191)
293 3s99_A Basic membrane lipoprot 35.9 1.5E+02 0.0052 23.0 14.6 146 32-189 84-241 (356)
294 2a2k_A M-phase inducer phospha 35.8 20 0.00068 24.6 2.2 36 154-189 90-139 (175)
295 2fp3_A Caspase NC; apoptosis, 35.7 44 0.0015 25.7 4.3 39 155-194 63-113 (316)
296 1aba_A Glutaredoxin; electron 35.7 67 0.0023 18.8 5.3 23 162-184 13-35 (87)
297 3kl4_A SRP54, signal recogniti 35.7 35 0.0012 27.5 3.9 55 57-111 178-235 (433)
298 2o0j_A Terminase, DNA packagin 35.2 39 0.0013 26.8 4.0 39 57-97 272-312 (385)
299 1w4r_A Thymidine kinase; type 34.9 47 0.0016 23.6 4.0 77 14-95 21-123 (195)
300 1qtn_A Caspase-8; apoptosis, d 34.8 39 0.0013 23.2 3.5 28 163-191 54-81 (164)
301 3d8u_A PURR transcriptional re 34.5 51 0.0017 23.8 4.4 38 142-179 169-206 (275)
302 3euj_A Chromosome partition pr 33.8 30 0.001 28.4 3.2 38 57-97 413-450 (483)
303 2ipc_A Preprotein translocase 33.6 44 0.0015 30.0 4.3 59 137-195 102-166 (997)
304 3h5t_A Transcriptional regulat 33.4 46 0.0016 25.5 4.1 38 142-179 256-293 (366)
305 3dbi_A Sugar-binding transcrip 33.1 50 0.0017 24.9 4.3 38 142-179 230-267 (338)
306 3l78_A Regulatory protein SPX; 33.0 76 0.0026 20.2 4.6 24 161-184 8-31 (120)
307 3cs3_A Sugar-binding transcrip 33.0 60 0.002 23.5 4.6 38 142-179 164-202 (277)
308 8tfv_A Protein (thanatin); bac 33.0 14 0.00046 15.5 0.5 9 156-164 7-15 (21)
309 2fep_A Catabolite control prot 33.0 50 0.0017 24.2 4.2 38 142-179 183-220 (289)
310 1jye_A Lactose operon represso 32.8 57 0.0019 24.8 4.6 38 142-179 226-263 (349)
311 1m72_A Caspase-1; caspase, cys 32.7 40 0.0014 25.3 3.5 37 155-192 34-83 (272)
312 2h0a_A TTHA0807, transcription 32.6 59 0.002 23.4 4.5 38 142-179 168-205 (276)
313 3bbl_A Regulatory protein of L 32.6 59 0.002 23.7 4.5 38 142-179 174-213 (287)
314 3h5o_A Transcriptional regulat 32.4 46 0.0016 25.1 4.0 38 142-179 227-264 (339)
315 3kjx_A Transcriptional regulat 32.4 49 0.0017 25.0 4.2 38 142-179 235-272 (344)
316 3g1w_A Sugar ABC transporter; 32.4 1.5E+02 0.005 21.7 15.3 38 141-178 174-211 (305)
317 1s2m_A Putative ATP-dependent 32.2 1.1E+02 0.0036 23.6 6.2 39 153-191 89-131 (400)
318 1hv8_A Putative ATP-dependent 32.1 1E+02 0.0034 23.2 5.9 39 153-191 74-116 (367)
319 3od5_A Caspase-6; caspase doma 31.8 46 0.0016 25.0 3.7 38 155-193 23-74 (278)
320 3sir_A Caspase; hydrolase; 2.6 31.7 36 0.0012 25.3 3.1 28 163-191 43-70 (259)
321 1pyo_A Caspase-2; apoptosis, c 31.1 45 0.0015 23.0 3.3 38 155-193 35-86 (167)
322 3hs3_A Ribose operon repressor 31.1 38 0.0013 24.7 3.2 38 142-179 166-203 (277)
323 2j0s_A ATP-dependent RNA helic 30.7 1.2E+02 0.0042 23.3 6.3 40 153-192 105-148 (410)
324 2rgy_A Transcriptional regulat 30.6 55 0.0019 24.0 4.0 38 142-179 177-214 (290)
325 3egc_A Putative ribose operon 30.6 49 0.0017 24.2 3.8 38 142-179 174-211 (291)
326 1fov_A Glutaredoxin 3, GRX3; a 30.5 76 0.0026 17.8 4.5 21 163-183 11-31 (82)
327 3gr0_A Protein PRGH; type III 30.4 31 0.001 24.7 2.4 39 154-195 27-67 (197)
328 2fn9_A Ribose ABC transporter, 30.4 1.3E+02 0.0045 21.7 6.2 45 142-186 179-224 (290)
329 2qz4_A Paraplegin; AAA+, SPG7, 30.4 48 0.0017 23.8 3.7 14 59-72 99-112 (262)
330 3kke_A LACI family transcripti 30.4 57 0.002 24.1 4.1 38 142-179 180-222 (303)
331 2l8b_A Protein TRAI, DNA helic 30.2 28 0.00095 24.7 2.1 63 33-98 79-158 (189)
332 1w1w_A Structural maintenance 30.1 29 0.00099 27.7 2.5 41 57-97 354-395 (430)
333 3d8b_A Fidgetin-like protein 1 30.0 51 0.0018 25.5 3.9 15 58-72 176-190 (357)
334 2vsw_A Dual specificity protei 29.9 13 0.00043 24.9 0.3 36 154-189 79-123 (153)
335 1qpz_A PURA, protein (purine n 29.9 61 0.0021 24.4 4.3 38 142-179 226-263 (340)
336 2hsg_A Glucose-resistance amyl 29.8 60 0.002 24.4 4.2 38 142-179 227-264 (332)
337 3c3k_A Alanine racemase; struc 29.7 62 0.0021 23.6 4.2 38 142-179 170-209 (285)
338 3rdw_A Putative arsenate reduc 29.7 66 0.0023 20.6 3.8 28 157-184 8-36 (121)
339 2bjv_A PSP operon transcriptio 29.6 41 0.0014 24.5 3.1 15 58-72 100-114 (265)
340 1sxj_A Activator 1 95 kDa subu 29.6 73 0.0025 26.1 4.9 41 57-99 147-189 (516)
341 3pvs_A Replication-associated 29.5 24 0.0008 28.6 1.9 17 56-72 104-120 (447)
342 2eyq_A TRCF, transcription-rep 29.3 44 0.0015 30.6 3.8 43 142-184 374-416 (1151)
343 3hjh_A Transcription-repair-co 29.3 94 0.0032 25.4 5.4 47 130-176 16-62 (483)
344 3uk6_A RUVB-like 2; hexameric 29.2 58 0.002 24.9 4.1 12 60-71 191-202 (368)
345 3hft_A WBMS, polysaccharide de 29.2 92 0.0031 23.2 4.8 54 133-189 42-97 (257)
346 2j32_A Caspase-3; Pro-caspase3 29.0 58 0.002 24.0 3.8 27 164-191 41-67 (250)
347 3b9p_A CG5977-PA, isoform A; A 28.9 85 0.0029 23.1 4.9 16 58-73 113-128 (297)
348 4b3f_X DNA-binding protein smu 28.7 21 0.00071 30.3 1.5 55 35-96 343-397 (646)
349 1dbq_A Purine repressor; trans 28.7 69 0.0024 23.2 4.3 38 142-179 175-212 (289)
350 3e3m_A Transcriptional regulat 28.4 47 0.0016 25.3 3.4 38 142-179 238-275 (355)
351 2nn3_C Caspase-1; cysteine pro 28.3 52 0.0018 25.2 3.5 38 155-193 62-112 (310)
352 2qp9_X Vacuolar protein sortin 28.1 73 0.0025 24.6 4.5 15 58-72 143-157 (355)
353 2qgz_A Helicase loader, putati 28.1 54 0.0019 24.8 3.7 58 13-70 152-226 (308)
354 3gyb_A Transcriptional regulat 28.1 50 0.0017 23.9 3.4 39 141-179 163-201 (280)
355 1ofh_A ATP-dependent HSL prote 27.9 1.2E+02 0.0041 22.2 5.6 15 59-73 117-131 (310)
356 3cf0_A Transitional endoplasmi 27.9 43 0.0015 25.1 3.0 43 59-101 109-164 (301)
357 4as2_A Phosphorylcholine phosp 27.8 44 0.0015 25.8 3.1 106 76-181 145-283 (327)
358 2c9o_A RUVB-like 1; hexameric 27.7 62 0.0021 26.0 4.1 23 60-86 297-319 (456)
359 1g8p_A Magnesium-chelatase 38 27.5 50 0.0017 25.0 3.4 14 59-72 145-158 (350)
360 3dkp_A Probable ATP-dependent 27.3 40 0.0014 24.1 2.7 37 153-189 98-138 (245)
361 2vk2_A YTFQ, ABC transporter p 27.3 78 0.0027 23.3 4.4 38 142-179 176-216 (306)
362 3h7a_A Short chain dehydrogena 27.0 1.5E+02 0.005 21.3 5.8 49 138-186 40-92 (252)
363 3r1i_A Short-chain type dehydr 26.9 1.5E+02 0.0051 21.7 5.9 50 138-187 65-119 (276)
364 3jvd_A Transcriptional regulat 26.7 71 0.0024 24.1 4.2 38 141-179 219-256 (333)
365 1sgw_A Putative ABC transporte 26.7 54 0.0018 23.5 3.2 42 56-97 149-190 (214)
366 4ad8_A DNA repair protein RECN 26.6 21 0.00073 29.3 1.2 39 60-98 419-457 (517)
367 3vfd_A Spastin; ATPase, microt 26.1 63 0.0021 25.2 3.8 14 59-72 208-221 (389)
368 2orv_A Thymidine kinase; TP4A 26.1 1E+02 0.0035 22.6 4.6 26 57-85 89-114 (234)
369 3huu_A Transcription regulator 25.8 43 0.0015 24.8 2.7 37 143-179 190-227 (305)
370 2j9r_A Thymidine kinase; TK1, 25.7 60 0.002 23.4 3.3 13 58-70 101-113 (214)
371 3lyl_A 3-oxoacyl-(acyl-carrier 25.5 1.5E+02 0.0052 21.0 5.6 51 137-187 37-92 (247)
372 3ucx_A Short chain dehydrogena 25.4 1.5E+02 0.0051 21.4 5.6 51 137-187 43-98 (264)
373 2ehv_A Hypothetical protein PH 25.3 37 0.0013 24.2 2.2 44 57-100 134-182 (251)
374 2l69_A Rossmann 2X3 fold prote 25.2 1.3E+02 0.0043 18.6 6.8 53 133-185 55-109 (134)
375 2xau_A PRE-mRNA-splicing facto 25.1 45 0.0016 29.1 3.0 47 11-63 337-392 (773)
376 2iks_A DNA-binding transcripti 25.1 51 0.0017 24.1 3.0 38 142-179 185-222 (293)
377 3hcw_A Maltose operon transcri 25.1 76 0.0026 23.3 4.0 38 142-179 177-217 (295)
378 3brs_A Periplasmic binding pro 24.6 93 0.0032 22.5 4.4 38 142-179 178-215 (289)
379 1t6t_1 Putative protein; struc 24.6 67 0.0023 20.8 3.0 30 13-42 40-70 (118)
380 3clk_A Transcription regulator 24.5 80 0.0027 23.0 4.0 37 142-179 174-210 (290)
381 4ehd_A Caspase-3; caspase, apo 24.1 79 0.0027 23.7 3.8 28 164-192 69-96 (277)
382 3brq_A HTH-type transcriptiona 23.9 65 0.0022 23.4 3.4 38 142-179 188-225 (296)
383 1nw9_B Caspase 9, apoptosis-re 23.8 65 0.0022 24.1 3.3 28 164-192 46-73 (277)
384 3vkw_A Replicase large subunit 23.7 1.8E+02 0.006 23.6 6.0 12 59-70 235-246 (446)
385 3m9w_A D-xylose-binding peripl 23.7 94 0.0032 22.9 4.3 46 142-187 175-223 (313)
386 2j48_A Two-component sensor ki 23.6 91 0.0031 18.4 3.6 47 138-188 10-56 (119)
387 3ju3_A Probable 2-oxoacid ferr 23.5 1.2E+02 0.0042 19.2 4.2 25 161-185 23-47 (118)
388 1gud_A ALBP, D-allose-binding 23.3 1E+02 0.0034 22.5 4.3 38 142-179 181-218 (288)
389 3gbv_A Putative LACI-family tr 23.2 98 0.0033 22.5 4.3 43 140-183 186-229 (304)
390 2w58_A DNAI, primosome compone 23.1 32 0.0011 23.8 1.4 14 57-70 114-127 (202)
391 3lhi_A Putative 6-phosphogluco 22.8 38 0.0013 24.7 1.8 33 35-67 36-71 (232)
392 2khp_A Glutaredoxin; thioredox 22.7 1.2E+02 0.0041 17.5 5.3 21 163-183 16-36 (92)
393 1xwi_A SKD1 protein; VPS4B, AA 22.7 88 0.003 23.7 4.0 15 58-72 105-119 (322)
394 1rif_A DAR protein, DNA helica 22.6 1.1E+02 0.0036 22.5 4.3 39 152-190 156-198 (282)
395 4g81_D Putative hexonate dehyd 22.6 1.3E+02 0.0044 22.2 4.7 49 138-186 42-95 (255)
396 1ixz_A ATP-dependent metallopr 22.5 1.4E+02 0.0049 21.3 5.0 14 59-72 109-122 (254)
397 1lv7_A FTSH; alpha/beta domain 22.4 90 0.0031 22.5 3.8 14 59-72 105-118 (257)
398 2ql9_A Caspase-7; cysteine pro 22.4 46 0.0016 23.2 2.0 27 164-191 69-95 (173)
399 4fe7_A Xylose operon regulator 22.3 85 0.0029 24.6 3.9 38 142-179 191-228 (412)
400 3d02_A Putative LACI-type tran 22.3 1.2E+02 0.0042 22.0 4.7 37 142-178 177-213 (303)
401 3lwd_A 6-phosphogluconolactona 22.2 40 0.0014 24.5 1.8 27 41-67 44-70 (226)
402 2zj8_A DNA helicase, putative 22.0 91 0.0031 26.6 4.3 41 152-192 67-110 (720)
403 2ioy_A Periplasmic sugar-bindi 22.0 1.1E+02 0.0036 22.2 4.2 37 142-178 171-207 (283)
404 1f2t_B RAD50 ABC-ATPase; DNA d 21.9 57 0.0019 21.8 2.4 41 57-97 80-121 (148)
405 3pfi_A Holliday junction ATP-d 21.9 99 0.0034 23.3 4.1 16 56-71 104-119 (338)
406 3gkx_A Putative ARSC family re 21.5 1.3E+02 0.0045 19.1 4.1 29 156-184 6-35 (120)
407 4a4z_A Antiviral helicase SKI2 21.4 1.2E+02 0.0041 27.4 5.0 40 152-191 81-122 (997)
408 3bil_A Probable LACI-family tr 21.4 1.3E+02 0.0046 22.7 4.8 36 142-179 231-266 (348)
409 3qiv_A Short-chain dehydrogena 21.4 1.8E+02 0.0062 20.6 5.4 51 137-187 41-96 (253)
410 1rw1_A Conserved hypothetical 21.3 1.4E+02 0.0049 18.6 4.2 28 156-183 2-30 (114)
411 4gxt_A A conserved functionall 21.3 2.9E+02 0.01 21.6 6.8 96 76-171 223-330 (385)
412 4gl2_A Interferon-induced heli 21.2 27 0.00092 29.6 0.8 39 154-192 57-99 (699)
413 2dri_A D-ribose-binding protei 21.1 86 0.0029 22.6 3.5 37 142-178 170-206 (271)
414 1im5_A 180AA long hypothetical 21.1 1.8E+02 0.0062 19.7 5.0 41 144-184 110-152 (180)
415 3gaf_A 7-alpha-hydroxysteroid 21.0 1.6E+02 0.0056 21.1 5.0 51 137-187 44-99 (256)
416 1c4o_A DNA nucleotide excision 20.9 1.5E+02 0.005 25.3 5.3 46 131-176 31-76 (664)
417 2r62_A Cell division protease 20.8 20 0.00067 26.3 -0.1 14 59-72 104-117 (268)
418 3puk_A Syntaxin-binding protei 20.8 1.2E+02 0.004 25.5 4.6 38 14-51 532-579 (592)
419 3nwp_A 6-phosphogluconolactona 20.8 40 0.0014 24.6 1.6 33 35-67 39-74 (233)
420 3imf_A Short chain dehydrogena 20.6 1.5E+02 0.0053 21.2 4.8 50 137-186 38-92 (257)
421 3sju_A Keto reductase; short-c 20.4 2.1E+02 0.007 20.9 5.6 51 137-187 56-111 (279)
422 3qua_A Putative uncharacterize 20.2 1E+02 0.0035 21.9 3.6 31 153-185 22-59 (199)
423 3h75_A Periplasmic sugar-bindi 20.0 2.4E+02 0.0081 21.1 6.0 56 137-192 45-101 (350)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.6e-32 Score=221.81 Aligned_cols=186 Identities=33% Similarity=0.572 Sum_probs=174.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc--cC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF--RG 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~--~~ 88 (197)
.++++..++||.+...+.+.+..+++|+|+||++|.+++.+....+++++++|+||||++++++|...+..++..+ ++
T Consensus 156 ~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~ 235 (434)
T 2db3_A 156 SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP 235 (434)
T ss_dssp SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCS
T ss_pred CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCC
Confidence 4789999999999998888888899999999999999999888889999999999999999999999999999885 57
Q ss_pred CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHH
Q psy7789 89 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDA 168 (197)
Q Consensus 89 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~ 168 (197)
..|+++||||+++++...+..++.++..+.+.........+.+.++.+....|...+.+++.....++||||+|++.|+.
T Consensus 236 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~ 315 (434)
T 2db3_A 236 EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADF 315 (434)
T ss_dssp SCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHH
T ss_pred CceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHH
Confidence 88999999999999999999999999999888777777889999999999999999999999887789999999999999
Q ss_pred HHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 169 IHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 169 l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+++.|++.|+++..+||+|++++|++++
T Consensus 316 l~~~L~~~~~~~~~lhg~~~~~~R~~~l 343 (434)
T 2db3_A 316 LASFLSEKEFPTTSIHGDRLQSQREQAL 343 (434)
T ss_dssp HHHHHHHTTCCEEEESTTSCHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 9999999999999999999999999876
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=4.3e-29 Score=203.25 Aligned_cols=186 Identities=38% Similarity=0.711 Sum_probs=167.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhh--ccC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSF--FRG 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~--~~~ 88 (197)
.++++..++||.+...+.+.+..+++|+|+||++|...+....+.+++++++|+||||.+.+++|...+..++.. ++.
T Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~ 207 (417)
T 2i4i_A 128 SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP 207 (417)
T ss_dssp SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC
T ss_pred CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC
Confidence 478999999999998888888888999999999999999988888999999999999999999999999999875 333
Q ss_pred --CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC--CCCEEEEecccc
Q psy7789 89 --QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT--EPPVLIFAEKKQ 164 (197)
Q Consensus 89 --~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~lIF~~s~~ 164 (197)
..|++++|||+++.+......++.++..+.+.........+.+.+..+...+|...+.++++.. ++++||||++++
T Consensus 208 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~ 287 (417)
T 2i4i_A 208 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKK 287 (417)
T ss_dssp BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHH
T ss_pred cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 6799999999999999999999999998888877777788999999999999999999999876 458999999999
Q ss_pred cHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 165 DVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 165 ~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.++.+++.|++.|+++..+||+|++++|++++
T Consensus 288 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 288 GADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 99999999999999999999999999999875
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=6.6e-29 Score=201.95 Aligned_cols=186 Identities=24% Similarity=0.408 Sum_probs=168.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.....+...+..+++|+|+||++|.+++.+..+.+.+++++|+||||.+.++++...+..+++.+++..
T Consensus 132 ~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 132 MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred CCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 47899999999999888888888899999999999999998888899999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchh-hHHHHHHHhhcC-CCCEEEEecccccHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEA-KIVYLLECLQKT-EPPVLIFAEKKQDVDA 168 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~-~~~~lIF~~s~~~~~~ 168 (197)
|++++|||+++++.+....++.+|..+.+.........+.+.+..+.... |...+.++++.. .+++||||++++.++.
T Consensus 212 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~ 291 (410)
T 2j0s_A 212 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 291 (410)
T ss_dssp EEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHH
Confidence 99999999999999888899999988877766667778888888776544 888888888765 3589999999999999
Q ss_pred HHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 169 IHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 169 l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+++.|.+.|+++..+||+|++++|++++
T Consensus 292 l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (410)
T 2j0s_A 292 LTEKMREANFTVSSMHGDMPQKERESIM 319 (410)
T ss_dssp HHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred HHHHHHhCCCceEEeeCCCCHHHHHHHH
Confidence 9999999999999999999999999875
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=9.4e-28 Score=195.06 Aligned_cols=186 Identities=24% Similarity=0.400 Sum_probs=165.6
Q ss_pred CCeeEEEEEcCCChHHhHHHHh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
.++++..++||.+...+...+. ++++|+|+||++|.+.+....+.++++++||+||||.+.++++...+..++..++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 214 (414)
T 3eiq_A 135 MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 214 (414)
T ss_dssp SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTT
T ss_pred cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCC
Confidence 3688899999998888877775 679999999999999999888889999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc-hhhHHHHHHHhhcCC-CCEEEEecccccHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ-EAKIVYLLECLQKTE-PPVLIFAEKKQDVD 167 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~ 167 (197)
.|++++|||+++.+......++.++..+...........+.+.+..+.. +.|...+.++++... +++||||++++.++
T Consensus 215 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 294 (414)
T 3eiq_A 215 TQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVD 294 (414)
T ss_dssp CEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHH
T ss_pred CeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHH
Confidence 9999999999999999999999999988888777777788888877755 458899999988764 58999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.|.+.|+.+..+||+|++++|++++
T Consensus 295 ~l~~~l~~~~~~~~~~h~~~~~~~r~~~~ 323 (414)
T 3eiq_A 295 WLTEKMHARDFTVSAMHGDMDQKERDVIM 323 (414)
T ss_dssp HHHHHHHTTTCCCEEC---CHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999875
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=8.3e-27 Score=188.16 Aligned_cols=185 Identities=25% Similarity=0.395 Sum_probs=164.7
Q ss_pred CeeEEEEEcCCChHHhHHHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~~~~~~ 89 (197)
++++..++||.+...+...+.. .++|+|+||+++...+.+....+.+++++|+||||.+.++ ++...+..++...++.
T Consensus 105 ~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~ 184 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 184 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSS
T ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCC
Confidence 7999999999998887777754 5899999999999999888888999999999999999885 6788889999999889
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCC-ccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAG-AASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVD 167 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~ 167 (197)
.|++++|||+++........++.+|..+...... .....+.+.+..+....|...+.++++... +++||||++++.++
T Consensus 185 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 185 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp SEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHH
T ss_pred ceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHH
Confidence 9999999999999999999999999888776544 344667888888888999999999998664 58999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.|++.|+++..+||+|++++|++++
T Consensus 265 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 265 ALAQLLVEQNFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 99999999999999999999999999875
No 6
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=2.8e-26 Score=183.27 Aligned_cols=181 Identities=27% Similarity=0.405 Sum_probs=162.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.....+...+. +++|+|+||+++...+......+.+++++|+||||.+.++++...+..++..+++..
T Consensus 101 ~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 101 KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp SCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred CCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 4688999999998887777666 599999999999999988888899999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIH 170 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~ 170 (197)
|++++|||++++.......++.++..+.... ...+.+.+..+...+|...+.++++..+.++||||++++.++.++
T Consensus 180 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~ 255 (367)
T 1hv8_A 180 RILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELA 255 (367)
T ss_dssp EEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHH
T ss_pred eEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHH
Confidence 9999999999999999999998877665432 235777888888999999999999987789999999999999999
Q ss_pred HHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 171 EYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 171 ~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.|++.|+++..+||+|++++|++++
T Consensus 256 ~~L~~~~~~~~~~~~~~~~~~r~~~~ 281 (367)
T 1hv8_A 256 SMLRDIGFKAGAIHGDLSQSQREKVI 281 (367)
T ss_dssp HHHHHTTCCEEEECSSSCHHHHHHHH
T ss_pred HHHHhcCCCeEEeeCCCCHHHHHHHH
Confidence 99999999999999999999999875
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=9.5e-27 Score=188.56 Aligned_cols=185 Identities=24% Similarity=0.434 Sum_probs=164.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.|+++..++||.....+...+..+++|+|+||+++...+......+.+++++|+||||++.+.++...+..++..+++..
T Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~ 195 (400)
T 1s2m_A 116 CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195 (400)
T ss_dssp TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCc
Confidence 37899999999988887777778899999999999999988878899999999999999988888889999999998899
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAI 169 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l 169 (197)
|++++|||+++.+......++.+|..+..... .....+.+.+..+....|...+..+++... +++||||++++.++.+
T Consensus 196 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 274 (400)
T 1s2m_A 196 QSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELL 274 (400)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHH
T ss_pred eEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHH
Confidence 99999999999999999999998877765533 345667888888888899999998888764 5899999999999999
Q ss_pred HHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 170 HEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 170 ~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
++.|++.|+.+..+||+|++++|++++
T Consensus 275 ~~~L~~~~~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 275 AKKITDLGYSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp HHHHHHHTCCEEEECTTSCHHHHHHHH
T ss_pred HHHHHhcCCCeEEecCCCCHHHHHHHH
Confidence 999999999999999999999999875
No 8
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=3.3e-27 Score=190.57 Aligned_cols=186 Identities=23% Similarity=0.383 Sum_probs=100.7
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+...+...+. +++|+|+||+++...+....+.+.+++++|+||||.+.++++...+..++..+++..
T Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T 1fuu_A 116 MDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194 (394)
T ss_dssp SCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred CCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCc
Confidence 4789999999998877776666 499999999999999988888889999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchh-hHHHHHHHhhcC-CCCEEEEecccccHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEA-KIVYLLECLQKT-EPPVLIFAEKKQDVDA 168 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~-~~~~lIF~~s~~~~~~ 168 (197)
|++++|||+++.+.+....++.+|..+...........+.+.+..+...+ +...+.++++.. .+++||||++++.++.
T Consensus 195 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~ 274 (394)
T 1fuu_A 195 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEE 274 (394)
T ss_dssp EEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------------------------------
T ss_pred eEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHH
Confidence 99999999999999999999999998888777666677777777665544 777777777764 3589999999999999
Q ss_pred HHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 169 IHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 169 l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+++.|++.|+++..+||+|++++|+++++
T Consensus 275 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 303 (394)
T 1fuu_A 275 LTTKLRNDKFTVSAIYSDLPQQERDTIMK 303 (394)
T ss_dssp -----------------------------
T ss_pred HHHHHHHcCCeEEEeeCCCCHHHHHHHHH
Confidence 99999999999999999999999998763
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=1.1e-25 Score=182.65 Aligned_cols=182 Identities=21% Similarity=0.291 Sum_probs=158.4
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~ 89 (197)
++++....||....... ..+++|+|+||+++...+.+ +.+.+++++++|+||||.+.+ .++...+..+...++++
T Consensus 124 ~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 200 (412)
T 3fht_A 124 ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 200 (412)
T ss_dssp TCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTT
T ss_pred cceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCC
Confidence 67888888887654432 34589999999999999865 567789999999999999987 67888999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc-hhhHHHHHHHhhcC-CCCEEEEecccccHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ-EAKIVYLLECLQKT-EPPVLIFAEKKQDVD 167 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~ 167 (197)
.|++++|||+++.+......++.++..+.+.........+.+.+..+.. ..+...+.+++... .+++||||++++.|+
T Consensus 201 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 280 (412)
T 3fht_A 201 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTAS 280 (412)
T ss_dssp CEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHH
T ss_pred ceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999888777777888888777754 66888888888764 468999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.|.+.|+.+..+||+|++++|++++
T Consensus 281 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 281 WLAAELSKEGHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999876
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.93 E-value=6.5e-25 Score=176.94 Aligned_cols=182 Identities=21% Similarity=0.311 Sum_probs=155.4
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~ 89 (197)
.++.+...+|+...... ..+++|+|+||+++...+.+....+.+++++|+||||.+.+ .++...+..+...++++
T Consensus 102 ~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
T 3pey_A 102 TKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177 (395)
T ss_dssp SCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTT
T ss_pred cCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCC
Confidence 35666667766543322 23589999999999999988888899999999999999987 67888999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC-chhhHHHHHHHhhcCC-CCEEEEecccccHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKTE-PPVLIFAEKKQDVD 167 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~ 167 (197)
.|++++|||+++.+......++.++..+...........+.+.+..+. ...+...+..++.... +++||||++++.|+
T Consensus 178 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 257 (395)
T 3pey_A 178 TQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTAN 257 (395)
T ss_dssp CEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHH
T ss_pred cEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHH
Confidence 999999999999999999999999988888776666777888777774 4667788888877654 68999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+++.|++.|+++..+||+|++++|++++
T Consensus 258 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 286 (395)
T 3pey_A 258 VLYGKLKSEGHEVSILHGDLQTQERDRLI 286 (395)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 99999999999999999999999999876
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=3.6e-25 Score=187.70 Aligned_cols=185 Identities=24% Similarity=0.373 Sum_probs=149.1
Q ss_pred CeeEEEEEcCCChHHhHHHHh-cCCcEEEeCchHHHHHHhcC-CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIK-KGCHMMVATPGRLMDMLDKK-MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG- 88 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~-~~~~Ili~TP~~l~~~l~~~-~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~- 88 (197)
.+.+..++||.....+...+. .+++|+|+||++|.+.+.+. ...++.+++||+||||++++++|...+..++..++.
T Consensus 127 ~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~ 206 (579)
T 3sqw_A 127 KYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEK 206 (579)
T ss_dssp TSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhh
Confidence 577889999999888887774 47999999999999988764 456899999999999999999999999998877643
Q ss_pred ------CceEEEEeecCChhHHHHHHHhcCCCeEEEeCC----CCccCcceeEEEEEcCc-hhhH----HHHHHHhhc--
Q psy7789 89 ------QRQTLLFSATMPKKIQNFARSALVKPITINVGR----AGAASMNVVQEVEYVKQ-EAKI----VYLLECLQK-- 151 (197)
Q Consensus 89 ------~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~i~~~~~~~~~-~~k~----~~l~~~l~~-- 151 (197)
..|++++|||+++.+...+..++.++..+.+.. .......+.+.+..... ..+. ..+...+..
T Consensus 207 ~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (579)
T 3sqw_A 207 NSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERD 286 (579)
T ss_dssp CSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTT
T ss_pred hcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcC
Confidence 679999999999999999999999887766543 22334556666665543 2222 333344442
Q ss_pred CCCCEEEEecccccHHHHHHHHHhC---CCCeEeecCCCChhhhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLK---GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+.++||||+|++.|+.+++.|++. |+.+..+||+|++++|++++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 2458999999999999999999987 89999999999999999876
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=7.9e-25 Score=184.83 Aligned_cols=185 Identities=24% Similarity=0.379 Sum_probs=147.7
Q ss_pred CeeEEEEEcCCChHHhHHHH-hcCCcEEEeCchHHHHHHhcC-CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc--
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI-KKGCHMMVATPGRLMDMLDKK-MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-- 87 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l-~~~~~Ili~TP~~l~~~l~~~-~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-- 87 (197)
++.+..++||.....+...+ ..+++|+|+||++|.+.+.+. ...++++++||+||||++++++|...+..++..++
T Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~ 257 (563)
T 3i5x_A 178 KYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEK 257 (563)
T ss_dssp TSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhc
Confidence 56788899999988887776 457999999999999988764 44678999999999999999999999998887764
Q ss_pred -----CCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCC----CccCcceeEEEEEcCc-hhhH----HHHHHHhhc--
Q psy7789 88 -----GQRQTLLFSATMPKKIQNFARSALVKPITINVGRA----GAASMNVVQEVEYVKQ-EAKI----VYLLECLQK-- 151 (197)
Q Consensus 88 -----~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~i~~~~~~~~~-~~k~----~~l~~~l~~-- 151 (197)
+..|++++|||+++.+......++.++..+.+... ......+.+.+..... ..+. ..+...+..
T Consensus 258 ~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (563)
T 3i5x_A 258 NSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERD 337 (563)
T ss_dssp CSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTT
T ss_pred cccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcC
Confidence 36799999999999999999999998876665322 2334456666665543 2232 333333332
Q ss_pred CCCCEEEEecccccHHHHHHHHHhC---CCCeEeecCCCChhhhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLK---GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+.++||||+|++.|+.+++.|++. |+++..+||+|++++|++++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 3458999999999999999999987 89999999999999999876
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=7.6e-26 Score=187.71 Aligned_cols=183 Identities=21% Similarity=0.296 Sum_probs=91.0
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~ 89 (197)
++++...+||....... ..+++|+|+||++|.+++.+ +.+.++++++||+||||.+++ .++...+..+.+.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~ 267 (479)
T 3fmp_B 191 ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267 (479)
T ss_dssp TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTT
T ss_pred CceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCcc
Confidence 57777777776544332 23579999999999999865 566789999999999999987 57888899999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc-hhhHHHHHHHhhcCC-CCEEEEecccccHH
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ-EAKIVYLLECLQKTE-PPVLIFAEKKQDVD 167 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~ 167 (197)
.|++++|||++.++......++.++..+.+.........+.+.+..+.. ..+...+..++.... +++||||++++.|+
T Consensus 268 ~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~ 347 (479)
T 3fmp_B 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTAS 347 (479)
T ss_dssp SEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------------
T ss_pred ceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHH
Confidence 9999999999999999999999999999998887777888888777764 567888888877653 58999999999999
Q ss_pred HHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 168 AIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 168 ~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.+++.|.+.|+.+..+||+|++.+|+++++
T Consensus 348 ~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~ 377 (479)
T 3fmp_B 348 WLAAELSKEGHQVALLSGEMMVEQRAAVIE 377 (479)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhCCccEEEecCCCCHHHHHHHHH
Confidence 999999999999999999999999998763
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=2.2e-23 Score=164.79 Aligned_cols=176 Identities=23% Similarity=0.406 Sum_probs=147.4
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+...+...+.+ ++|+|+||++|...+....+.+.+++++|+||||.+.++++...+..++...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 83 MDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp SCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred cCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 46889999999988877776665 99999999999999988888889999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhh-cCCCCEEEEecccccHHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQ-KTEPPVLIFAEKKQDVDAI 169 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-~~~~~~lIF~~s~~~~~~l 169 (197)
|++++|||+++........++.++..+... .....+.+.+..+....+.. ...+. ..++++||||++++.++.+
T Consensus 162 ~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lvf~~~~~~~~~l 236 (337)
T 2z0m_A 162 ITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSK--VQALRENKDKGVIVFVRTRNRVAKL 236 (337)
T ss_dssp EEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHH--HHHHHTCCCSSEEEECSCHHHHHHH
T ss_pred EEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHH--HHHHHhCCCCcEEEEEcCHHHHHHH
Confidence 999999999999999999999988776433 33455667666665544322 24444 4456899999999999999
Q ss_pred HHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 170 HEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 170 ~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
++.|. ++..+||+|++++|++++
T Consensus 237 ~~~l~----~~~~~~~~~~~~~r~~~~ 259 (337)
T 2z0m_A 237 VRLFD----NAIELRGDLPQSVRNRNI 259 (337)
T ss_dssp HTTCT----TEEEECTTSCHHHHHHHH
T ss_pred HHHhh----hhhhhcCCCCHHHHHHHH
Confidence 99887 588999999999999875
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.91 E-value=6.5e-24 Score=177.41 Aligned_cols=163 Identities=21% Similarity=0.329 Sum_probs=135.0
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhcC
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 112 (197)
+++|+|+||+++...+....+.+.+++++|+||||.+.+ .++...+..+...++++.|++++|||+++.+......++.
T Consensus 235 ~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~ 314 (508)
T 3fho_A 235 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAP 314 (508)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHST
T ss_pred CCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcC
Confidence 689999999999999988888899999999999999987 5799999999999999999999999999999999999999
Q ss_pred CCeEEEeCCCCccCcceeEEEEEc-CchhhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 113 KPITINVGRAGAASMNVVQEVEYV-KQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 113 ~~~~i~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
++..+.+.........+.+.+..+ ....+...+.+++... .+++||||++++.|+.+++.|.+.|+.+..+||+|+++
T Consensus 315 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~ 394 (508)
T 3fho_A 315 NANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGA 394 (508)
T ss_dssp TCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----C
T ss_pred CCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Confidence 998888877776666777777766 4466778888888765 46899999999999999999999999999999999999
Q ss_pred hhhhhh
Q psy7789 191 NNQTLE 196 (197)
Q Consensus 191 ~R~~i~ 196 (197)
+|++++
T Consensus 395 ~R~~il 400 (508)
T 3fho_A 395 QRDAIM 400 (508)
T ss_dssp TTGGGT
T ss_pred HHHHHH
Confidence 999875
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.90 E-value=3.9e-23 Score=175.21 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=137.3
Q ss_pred CeeEEEEEcCCChHHhHHHH------hcCCcEEEeCchHHHH---HHh--cCCccCCCccEEEeehhhhhhcCC--CHHH
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI------KKGCHMMVATPGRLMD---MLD--KKMVSLDVCRYLCLDEADRMVDMG--FEED 78 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l------~~~~~Ili~TP~~l~~---~l~--~~~~~l~~l~~vViDEad~l~~~~--~~~~ 78 (197)
|+++..+.|+.+...+...+ .++++|+++||++|.. ++. .....+.+++++||||||++.+|+ |++.
T Consensus 108 gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~ 187 (591)
T 2v1x_A 108 GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPD 187 (591)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGG
T ss_pred CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHH
Confidence 78899999998766554332 3469999999998852 221 234557899999999999999987 7776
Q ss_pred HHH--HHhhccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC--chhhHHHHHHHhhcC--
Q psy7789 79 VRT--IFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVK--QEAKIVYLLECLQKT-- 152 (197)
Q Consensus 79 i~~--i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~~l~~~-- 152 (197)
+.. .+....++.|++++|||+++.+...+..++..+....+.. ...++++...+.... ...+...+.++++..
T Consensus 188 ~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~ 266 (591)
T 2v1x_A 188 YKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYK 266 (591)
T ss_dssp GGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhcc
Confidence 654 3444445789999999999998888777776443222221 122344544444332 245678888888753
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.++||||+|++.|+.+++.|++.|+++..+||+|++++|++++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999876
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.89 E-value=3.6e-23 Score=168.58 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=130.2
Q ss_pred CCeeEEEEEcCCCh---HHhHHHHhcC-CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-----------CCC
Q psy7789 11 IPLRTCLAIGGVPM---NQSLDVIKKG-CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-----------MGF 75 (197)
Q Consensus 11 ~~i~~~~~~gg~~~---~~~~~~l~~~-~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-----------~~~ 75 (197)
.|+++..++||.+. ..+.+.+..+ ++|+|+||++|.+.+.. +.+.+++++|+||||++.+ .+|
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~ 167 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 167 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTC
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCC
Confidence 58999999999987 5566667655 99999999999988764 6678999999999987654 567
Q ss_pred HHH-HHHHHhhcc-----------CCceEEEEeec-CChhHH-HHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhh
Q psy7789 76 EED-VRTIFSFFR-----------GQRQTLLFSAT-MPKKIQ-NFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAK 141 (197)
Q Consensus 76 ~~~-i~~i~~~~~-----------~~~q~i~~SAT-~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k 141 (197)
.+. +..++..++ +..|++++||| .+..+. .....++. +.+.........+.+.+..+ ++
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~---~~ 240 (414)
T 3oiy_A 168 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RS 240 (414)
T ss_dssp CHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS---CC
T ss_pred cHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc---CH
Confidence 777 888888887 88999999999 554443 23333332 22333445556677776655 45
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeE-eecCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFF-TLKSL 186 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~-~~h~~ 186 (197)
...+.++++..++++||||++++.|+.+++.|++.|+++. .+||+
T Consensus 241 ~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 241 KEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp HHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred HHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 6667777777778999999999999999999999999998 99995
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.88 E-value=3.6e-22 Score=167.31 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=132.6
Q ss_pred CCeeEEEEEcCCChHHhHH---HH-hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC--CHHHHHHH--
Q psy7789 11 IPLRTCLAIGGVPMNQSLD---VI-KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG--FEEDVRTI-- 82 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~---~l-~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~--~~~~i~~i-- 82 (197)
.|+++..+.|+.+...... .+ .+.++|+++||++|........+...++++||+||||++.+|+ |++.+..+
T Consensus 88 ~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~ 167 (523)
T 1oyw_A 88 NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQ 167 (523)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGG
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHH
Confidence 3788888999887655432 22 4569999999999964322233445789999999999999886 66665543
Q ss_pred -HhhccCCceEEEEeecCChhHHHHHHHhc--CCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEE
Q psy7789 83 -FSFFRGQRQTLLFSATMPKKIQNFARSAL--VKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLI 158 (197)
Q Consensus 83 -~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lI 158 (197)
.+.+ ++.+++++|||.++.+.......+ .++..+... . .++++... ......+...+.++++... .++||
T Consensus 168 l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~--~r~~l~~~--v~~~~~~~~~l~~~l~~~~~~~~IV 241 (523)
T 1oyw_A 168 LRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-F--DRPNIRYM--LMEKFKPLDQLMRYVQEQRGKSGII 241 (523)
T ss_dssp HHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC-C--CCTTEEEE--EEECSSHHHHHHHHHHHTTTCCEEE
T ss_pred HHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC-C--CCCceEEE--EEeCCCHHHHHHHHHHhcCCCcEEE
Confidence 4444 468999999999988766444433 355443322 2 22344332 3344667888888887654 58999
Q ss_pred EecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 159 FAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 159 F~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
||+|++.|+.+++.|++.|+++..+||+|++++|++++
T Consensus 242 f~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 242 YCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 19
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.88 E-value=2.8e-22 Score=179.78 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=133.7
Q ss_pred CCCeeEEEEEcCCCh---HHhHHHHhcC-CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc-----------CC
Q psy7789 10 PIPLRTCLAIGGVPM---NQSLDVIKKG-CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD-----------MG 74 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~---~~~~~~l~~~-~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~-----------~~ 74 (197)
+.|+++..++||.+. ..+.+.+..+ ++|+|+||++|.+++.. +.++++++||+||||++.+ ++
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 468999999999987 6667777766 99999999999888774 6788999999999976554 77
Q ss_pred CHHH-HHHHHhhcc-----------CCceEEEEeec-CChhHHH-HHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchh
Q psy7789 75 FEED-VRTIFSFFR-----------GQRQTLLFSAT-MPKKIQN-FARSALVKPITINVGRAGAASMNVVQEVEYVKQEA 140 (197)
Q Consensus 75 ~~~~-i~~i~~~~~-----------~~~q~i~~SAT-~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 140 (197)
|... +..+++.++ ++.|++++||| .+..+.. .....+. +.+........++.+.++.+ +
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~ 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---R 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---C
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---C
Confidence 8887 899999888 88999999999 5544442 2333332 34444455567788877766 4
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeE-eecC
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFF-TLKS 185 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~-~~h~ 185 (197)
|...+.++++..++++||||++++.|+.+++.|++.|+++. .+||
T Consensus 297 k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg 342 (1104)
T 4ddu_A 297 SKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE 342 (1104)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC
Confidence 66677777777778999999999999999999999999998 9999
No 20
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.87 E-value=1.6e-21 Score=148.31 Aligned_cols=111 Identities=41% Similarity=0.694 Sum_probs=104.8
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++++..++||.+...+...+.++++|+|+||+++.+++.+....+++++++|+||||++++++|...+..+++.++++.|
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 209 (242)
T 3fe2_A 130 RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 209 (242)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCE
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccce
Confidence 78999999999999998888889999999999999999988888999999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHhcCCCeEEEeCCC
Q psy7789 92 TLLFSATMPKKIQNFARSALVKPITINVGRA 122 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 122 (197)
++++|||+++++..+++.++++|..+.+...
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999988754
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.6e-22 Score=177.47 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=132.4
Q ss_pred eEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEE
Q psy7789 14 RTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTL 93 (197)
Q Consensus 14 ~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i 93 (197)
++.+++|+.+.. .+++|+|+||++|.+++.+....++++++|||||||++.+++++..+..++..+++..|++
T Consensus 253 ~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl 325 (1108)
T 3l9o_A 253 DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 325 (1108)
T ss_dssp SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEE
T ss_pred CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEE
Confidence 577788887643 3599999999999999998887789999999999999999889999999999999999999
Q ss_pred EEeecCChh--HHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCc---------------------------------
Q psy7789 94 LFSATMPKK--IQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQ--------------------------------- 138 (197)
Q Consensus 94 ~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--------------------------------- 138 (197)
++|||++.. +..+.......+..+........ .+.++++....
T Consensus 326 ~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (1108)
T 3l9o_A 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDP 403 (1108)
T ss_dssp EEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccc
Confidence 999999764 44666666667666555433322 23333221110
Q ss_pred ----------------------hhhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCC----------------
Q psy7789 139 ----------------------EAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKP---------------- 179 (197)
Q Consensus 139 ----------------------~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~---------------- 179 (197)
..+...++..+... ..++||||++++.|+.++..|...|+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 483 (1108)
T 3l9o_A 404 NSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI 483 (1108)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSC
T ss_pred cccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 22334444454444 459999999999999999998654332
Q ss_pred -----------------------eEeecCCCChhhhhhhh
Q psy7789 180 -----------------------FFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 180 -----------------------~~~~h~~~~~~~R~~i~ 196 (197)
+..+||+|++.+|+.++
T Consensus 484 ~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~ 523 (1108)
T 3l9o_A 484 ALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 523 (1108)
T ss_dssp THHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHH
Confidence 78999999999999886
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-20 Score=166.86 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=130.2
Q ss_pred eEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEE
Q psy7789 14 RTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTL 93 (197)
Q Consensus 14 ~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i 93 (197)
++..++||.+... +++|+|+||++|.+++.+....++++++||+||||.+.+++++..+..++..+++..|++
T Consensus 155 ~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il 227 (1010)
T 2xgj_A 155 DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 227 (1010)
T ss_dssp CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEE
T ss_pred CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEE
Confidence 6777888876543 489999999999999988877889999999999999999999999999999999999999
Q ss_pred EEeecCChhH--HHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC---------c------------------------
Q psy7789 94 LFSATMPKKI--QNFARSALVKPITINVGRAGAASMNVVQEVEYVK---------Q------------------------ 138 (197)
Q Consensus 94 ~~SAT~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---------~------------------------ 138 (197)
++|||++... ..+.......+..+...+... ..+.++++... .
T Consensus 228 ~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 305 (1010)
T 2xgj_A 228 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDP 305 (1010)
T ss_dssp EEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccc
Confidence 9999997642 233333445565554443322 22444433211 0
Q ss_pred ----------------------hhhHHHHHHHhhcCC-CCEEEEecccccHHHHHHHHHhCCCC----------------
Q psy7789 139 ----------------------EAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGKP---------------- 179 (197)
Q Consensus 139 ----------------------~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~~~~~~---------------- 179 (197)
......++..+...+ .++||||+|++.|+.++..|...++.
T Consensus 306 ~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 385 (1010)
T 2xgj_A 306 NSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI 385 (1010)
T ss_dssp -----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 122334555554443 48999999999999999999875542
Q ss_pred -----------------------eEeecCCCChhhhhhhh
Q psy7789 180 -----------------------FFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 180 -----------------------~~~~h~~~~~~~R~~i~ 196 (197)
+..+||+|++.+|+.++
T Consensus 386 ~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve 425 (1010)
T 2xgj_A 386 ALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 425 (1010)
T ss_dssp TTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHH
T ss_pred HhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHH
Confidence 78899999999999886
No 23
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.85 E-value=1.2e-20 Score=144.20 Aligned_cols=122 Identities=48% Similarity=0.871 Sum_probs=101.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhh--ccC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSF--FRG 88 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~--~~~ 88 (197)
.++++..++||.+...+.+.+..+++|+|+||++|.+.+.+..+.+++++++|+||||++++++|...+..++.. .+.
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~ 206 (253)
T 1wrb_A 127 TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS 206 (253)
T ss_dssp SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC
T ss_pred CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC
Confidence 478999999999988888888888999999999999999988888999999999999999999999999999985 444
Q ss_pred --CceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEE
Q psy7789 89 --QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQE 132 (197)
Q Consensus 89 --~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~ 132 (197)
..|++++|||+++++..+++.++.+|..+.+.......+++.|.
T Consensus 207 ~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 207 GINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp GGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred CCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 67999999999999999999999999999998777777777664
No 24
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.85 E-value=8.1e-21 Score=142.97 Aligned_cols=110 Identities=38% Similarity=0.574 Sum_probs=97.6
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
..++++..++||.+...+...+.++++|+|+||+++.+++.+....+++++++|+||||++.+++|...+..++..++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~ 198 (228)
T 3iuy_A 119 YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD 198 (228)
T ss_dssp CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSS
T ss_pred ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcC
Confidence 45899999999999888888888899999999999999999888889999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEe
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINV 119 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 119 (197)
.|++++|||+++++.+.+..++++|..+.+
T Consensus 199 ~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 199 RQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred CeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999987753
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.85 E-value=3.5e-20 Score=160.53 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=128.5
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.|+++..++|+....... + ++++|+|+|||++..++.+....++++++||+||+|.+.+++++..+..++.+++ +.
T Consensus 101 ~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~ 176 (715)
T 2va8_A 101 IGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RR 176 (715)
T ss_dssp GTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TS
T ss_pred CCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cC
Confidence 488999999987654431 2 3699999999999999988777789999999999999988889999999988887 89
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEE------------EEEcC--------chhhHHHHHHHhh
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQE------------VEYVK--------QEAKIVYLLECLQ 150 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~------------~~~~~--------~~~k~~~l~~~l~ 150 (197)
|++++|||+++ ...+...+ ..+ .+...... ..+... ..+.. ...+...+.+.+.
T Consensus 177 ~ii~lSATl~n-~~~~~~~l-~~~-~~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
T 2va8_A 177 NLLALSATISN-YKQIAKWL-GAE-PVATNWRP---VPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS 250 (715)
T ss_dssp EEEEEESCCTT-HHHHHHHH-TCE-EEECCCCS---SCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEcCCCCC-HHHHHHHh-CCC-ccCCCCCC---CCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh
Confidence 99999999974 34555444 322 12111111 111111 11111 2344555555554
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhCC------------------------------------CCeEeecCCCChhhhhh
Q psy7789 151 KTEPPVLIFAEKKQDVDAIHEYLLLKG------------------------------------KPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 151 ~~~~~~lIF~~s~~~~~~l~~~L~~~~------------------------------------~~~~~~h~~~~~~~R~~ 194 (197)
.++++||||++++.++.++..|.+.. ..+..+||+|++++|+.
T Consensus 251 -~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~ 329 (715)
T 2va8_A 251 -KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329 (715)
T ss_dssp -TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred -cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH
Confidence 45799999999999999999998752 24899999999999998
Q ss_pred hh
Q psy7789 195 LE 196 (197)
Q Consensus 195 i~ 196 (197)
++
T Consensus 330 v~ 331 (715)
T 2va8_A 330 IE 331 (715)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 26
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.84 E-value=2.6e-21 Score=166.63 Aligned_cols=184 Identities=17% Similarity=0.240 Sum_probs=132.3
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHH-HHHHhcC------CccCCCccEEEeehhhhhh-cCC--------
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRL-MDMLDKK------MVSLDVCRYLCLDEADRMV-DMG-------- 74 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l-~~~l~~~------~~~l~~l~~vViDEad~l~-~~~-------- 74 (197)
.|+++..++||.+...+.. ..+|||+||||++| ++++... .+.++.++++|+||||.++ +.+
T Consensus 151 lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 3899999999988654433 34699999999999 6666432 4568999999999999998 543
Q ss_pred -------CHHHHHHHHhhcc---------CCceEE-----------------EEeecCChhHHHH-----HHHhcC-CCe
Q psy7789 75 -------FEEDVRTIFSFFR---------GQRQTL-----------------LFSATMPKKIQNF-----ARSALV-KPI 115 (197)
Q Consensus 75 -------~~~~i~~i~~~~~---------~~~q~i-----------------~~SAT~~~~~~~~-----~~~~~~-~~~ 115 (197)
|...+..|+..++ +.+|+. +||||++.....+ +..++. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 6788999999997 367887 8999987433332 222332 211
Q ss_pred EEE-------e-----------------------------CCCCccCccee-----------------------------
Q psy7789 116 TIN-------V-----------------------------GRAGAASMNVV----------------------------- 130 (197)
Q Consensus 116 ~i~-------~-----------------------------~~~~~~~~~i~----------------------------- 130 (197)
.+. + ..+......+.
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 110 0 00000000011
Q ss_pred ------------------EEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 131 ------------------QEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 131 ------------------~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
+.++++...+|...+.+.+.. .+.++||||+|++.++.++..|++.|+++..+||++++
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 124566778899999988864 35689999999999999999999999999999999998
Q ss_pred hhhhhhh
Q psy7789 190 QNNQTLE 196 (197)
Q Consensus 190 ~~R~~i~ 196 (197)
.+|+.+.
T Consensus 469 rEr~ii~ 475 (844)
T 1tf5_A 469 REAQIIE 475 (844)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887553
No 27
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.84 E-value=4.2e-21 Score=166.47 Aligned_cols=177 Identities=16% Similarity=0.152 Sum_probs=129.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.|+++..++|+....... .++++|+|+||+++..++.+....++++++||+||+|.+.++++...+..++..++++.
T Consensus 94 ~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (720)
T 2zj8_A 94 IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA 170 (720)
T ss_dssp GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTB
T ss_pred cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCC
Confidence 489999999987654431 23699999999999999987776689999999999999998889999999999988789
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEE------EcC-----chhhHHHHHHHhhcCCCCEEEE
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVE------YVK-----QEAKIVYLLECLQKTEPPVLIF 159 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~------~~~-----~~~k~~~l~~~l~~~~~~~lIF 159 (197)
|++++|||+++ ...+.. |+..+ .+.... .+..+...+. +.. ...+...+.+.++. ++++|||
T Consensus 171 ~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~---rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~LVF 243 (720)
T 2zj8_A 171 QIIGLSATIGN-PEELAE-WLNAE-LIVSDW---RPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRK-KKGALIF 243 (720)
T ss_dssp EEEEEECCCSC-HHHHHH-HTTEE-EEECCC---CSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHT-TCCEEEE
T ss_pred eEEEEcCCcCC-HHHHHH-HhCCc-ccCCCC---CCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhC-CCCEEEE
Confidence 99999999975 344444 44322 121111 1111222111 111 23445556665553 4799999
Q ss_pred ecccccHHHHHHHHHhCC---------------------------------CCeEeecCCCChhhhhhhhC
Q psy7789 160 AEKKQDVDAIHEYLLLKG---------------------------------KPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 160 ~~s~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~~~~~R~~i~~ 197 (197)
|+|++.|+.++..|.+.. ..+..+||+|++++|+.+++
T Consensus 244 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 244 VNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp CSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 999999999999997531 24899999999999998863
No 28
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.84 E-value=6.5e-21 Score=164.84 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=128.1
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc---
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF--- 86 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~--- 86 (197)
..|+++..++|+....... + ++++|+|+|||++..++.+....++++++||+||+|.+.++++...+..++..+
T Consensus 93 ~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~ 169 (702)
T 2p6r_A 93 KIGLRIGISTGDYESRDEH--L-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM 169 (702)
T ss_dssp TTTCCEEEECSSCBCCSSC--S-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCcchhh--c-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc
Confidence 3489999999987654331 1 369999999999999998877678999999999999999988888888877666
Q ss_pred cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEE------EcCchh-------hHHHHHHHhhcCC
Q psy7789 87 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVE------YVKQEA-------KIVYLLECLQKTE 153 (197)
Q Consensus 87 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~------~~~~~~-------k~~~l~~~l~~~~ 153 (197)
+++.|++++|||+++ ...+.. ++..+ .+..... +..+...+. +..... +...+.+.++ .+
T Consensus 170 ~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 242 (702)
T 2p6r_A 170 NKALRVIGLSATAPN-VTEIAE-WLDAD-YYVSDWR---PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA-EN 242 (702)
T ss_dssp CTTCEEEEEECCCTT-HHHHHH-HTTCE-EEECCCC---SSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH-TT
T ss_pred CcCceEEEECCCcCC-HHHHHH-HhCCC-cccCCCC---CccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh-cC
Confidence 568999999999985 455554 44432 2222111 111222111 111111 4555555554 45
Q ss_pred CCEEEEecccccHHHHHHHHHhC------------------------------CCCeEeecCCCChhhhhhhhC
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK------------------------------GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~------------------------------~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+++||||++++.++.++..|.+. +..+..+||+|++++|+.+++
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 316 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVED 316 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHH
Confidence 79999999999999999998753 235889999999999998863
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.84 E-value=1.4e-20 Score=167.52 Aligned_cols=175 Identities=16% Similarity=0.146 Sum_probs=131.7
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
|+++..++|+.+... .++|+|+||++|.+++......++++++|||||||++.+++++..+..++..+++..|
T Consensus 108 ~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 789999999876543 3899999999999999888778899999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHhc---CCCeEEEeCCCCccCcceeEEEE----------------------------------
Q psy7789 92 TLLFSATMPKKIQNFARSAL---VKPITINVGRAGAASMNVVQEVE---------------------------------- 134 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~i~~~~~---------------------------------- 134 (197)
++++|||+++.. ++..++. ..+..+....... ..+.++++
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRP--VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCS--SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCC--ccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 999999997543 4444433 1232222221111 11111111
Q ss_pred -----------------------------------------------------------EcCchhhHHHHHHHhhcCC-C
Q psy7789 135 -----------------------------------------------------------YVKQEAKIVYLLECLQKTE-P 154 (197)
Q Consensus 135 -----------------------------------------------------------~~~~~~k~~~l~~~l~~~~-~ 154 (197)
......+...+...+...+ .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~ 337 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELL 337 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHTTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCC
Confidence 0112344667777777654 6
Q ss_pred CEEEEecccccHHHHHHHHHhCCC---------------------------------------CeEeecCCCChhhhhhh
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLKGK---------------------------------------PFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~~~~~~R~~i 195 (197)
++||||+|++.|+.++..|.+.|+ .+..+||+|++.+|+.+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999987665 47899999999999988
Q ss_pred h
Q psy7789 196 E 196 (197)
Q Consensus 196 ~ 196 (197)
+
T Consensus 418 ~ 418 (997)
T 4a4z_A 418 E 418 (997)
T ss_dssp H
T ss_pred H
Confidence 6
No 30
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.84 E-value=7.7e-21 Score=163.48 Aligned_cols=184 Identities=15% Similarity=0.217 Sum_probs=108.8
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHH-HHHHhcC------CccCCCccEEEeehhhhhh-cC---------
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRL-MDMLDKK------MVSLDVCRYLCLDEADRMV-DM--------- 73 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l-~~~l~~~------~~~l~~l~~vViDEad~l~-~~--------- 73 (197)
.|+++++++||.+... +.+..++||+||||++| ++++..+ ...+++++++|+||||.++ +.
T Consensus 142 lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 3899999999988643 33444699999999999 7887654 3567999999999999998 43
Q ss_pred ------CCHHHHHHHHhhccC--------------------CceEE------------------------EEeecCChhH
Q psy7789 74 ------GFEEDVRTIFSFFRG--------------------QRQTL------------------------LFSATMPKKI 103 (197)
Q Consensus 74 ------~~~~~i~~i~~~~~~--------------------~~q~i------------------------~~SAT~~~~~ 103 (197)
++...+..|+..+++ .+|+. ++|||.++..
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~ 299 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLM 299 (853)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHH
Confidence 256788888888864 45654 8999976422
Q ss_pred HHH-----HHH------------------------hcC-------------CCeEEEeCCCCccCcceeE----------
Q psy7789 104 QNF-----ARS------------------------ALV-------------KPITINVGRAGAASMNVVQ---------- 131 (197)
Q Consensus 104 ~~~-----~~~------------------------~~~-------------~~~~i~~~~~~~~~~~i~~---------- 131 (197)
..+ +.. ++. .+..+.+..+......+++
T Consensus 300 ~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl 379 (853)
T 2fsf_A 300 HHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKL 379 (853)
T ss_dssp ---------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhh
Confidence 221 011 111 0122333333333333332
Q ss_pred -------------------------------------EEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHH
Q psy7789 132 -------------------------------------EVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHE 171 (197)
Q Consensus 132 -------------------------------------~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~ 171 (197)
.++++...+|...+.+.+.. .+.|+||||+|++.++.++.
T Consensus 380 ~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~ 459 (853)
T 2fsf_A 380 AGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSN 459 (853)
T ss_dssp EEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred hcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 24567788899999998854 34589999999999999999
Q ss_pred HHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 172 YLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 172 ~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|++.|+++.++||++.+.+|+.+.
T Consensus 460 ~L~~~gi~~~vLnak~~~rEa~iia 484 (853)
T 2fsf_A 460 ELTKAGIKHNVLNAKFHANEAAIVA 484 (853)
T ss_dssp HHHHTTCCCEECCTTCHHHHHHHHH
T ss_pred HHHHCCCCEEEecCChhHHHHHHHH
Confidence 9999999999999999888887654
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.83 E-value=1.1e-21 Score=175.75 Aligned_cols=164 Identities=16% Similarity=0.241 Sum_probs=131.0
Q ss_pred eEEEEEcCCChHHhH---HHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc----
Q psy7789 14 RTCLAIGGVPMNQSL---DVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF---- 86 (197)
Q Consensus 14 ~~~~~~gg~~~~~~~---~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~---- 86 (197)
++..++||.+...+. +.+.+ ++|+|+||++|.+.+.+ ++++++||+||||+++++ +..+..++..+
T Consensus 133 ~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~~~~~i~~~lgf~~ 205 (1054)
T 1gku_B 133 LIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SKNVDKLLHLLGFHY 205 (1054)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--THHHHHHHHHTTEEE
T ss_pred eEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--cccHHHHHHHhCcch
Confidence 899999999877643 44455 99999999999998775 679999999999999984 67777777666
Q ss_pred -------cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEE
Q psy7789 87 -------RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIF 159 (197)
Q Consensus 87 -------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF 159 (197)
+...|++++|||+++. ......++.++..+.+.........+.+.+. ..+|...+.++++..++++|||
T Consensus 206 ~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~~~~~LVF 281 (1054)
T 1gku_B 206 DLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKLGTGGIIY 281 (1054)
T ss_dssp ETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTSCSCEEEE
T ss_pred hhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhcCCCEEEE
Confidence 4578999999999987 5444455544444555545555566777655 4667778888888878899999
Q ss_pred ecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 160 AEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 160 ~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
|+|++.|+.+++.|++. +++..+||+|..
T Consensus 282 ~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~ 310 (1054)
T 1gku_B 282 ARTGEEAEEIYESLKNK-FRIGIVTATKKG 310 (1054)
T ss_dssp ESSHHHHHHHHHTTTTS-SCEEECTTSSSH
T ss_pred EcCHHHHHHHHHHHhhc-cCeeEEeccHHH
Confidence 99999999999999998 999999999953
No 32
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=138.33 Aligned_cols=109 Identities=39% Similarity=0.665 Sum_probs=100.7
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
++++..++||.+...+...+.++++|+|+||+++.+.+.+ ..+.+++++++|+||||++.+++|...+..+++.++++.
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~ 218 (249)
T 3ber_A 139 GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR 218 (249)
T ss_dssp TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSS
T ss_pred CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCC
Confidence 7899999999998888888888899999999999999875 556789999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeC
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVG 120 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 120 (197)
|++++|||+++++.++++.++++|..+.+.
T Consensus 219 ~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 219 KTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred eEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999988764
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.82 E-value=1.1e-19 Score=152.57 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=66.8
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc-cCCCccEEEeehhhhhhcCCCHHHH-HHHHhh-c--
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV-SLDVCRYLCLDEADRMVDMGFEEDV-RTIFSF-F-- 86 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~-~l~~l~~vViDEad~l~~~~~~~~i-~~i~~~-~-- 86 (197)
|+++..++||.+...+...+..+++|+|+||++|.+.+..+.+ .+.++++||+||||++.+++....+ ...+.. +
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 7899999999987777777777799999999999999988877 7999999999999999887643333 222222 1
Q ss_pred -cCCceEEEEeecCC
Q psy7789 87 -RGQRQTLLFSATMP 100 (197)
Q Consensus 87 -~~~~q~i~~SAT~~ 100 (197)
++.+|++++|||.+
T Consensus 163 ~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 163 ASQLPQILGLTASVG 177 (556)
T ss_dssp ---CCEEEEEESCCC
T ss_pred cCCCCeEEEEeCCcc
Confidence 35689999999984
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=4.5e-19 Score=145.76 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=71.8
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
+.++..++|+.........+. +++|+|+||+++...+....+.+.+++++|+||||.+.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~~-~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhhhcc-CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 458889999887765544443 5899999999999999888888999999999999999876555555555555667899
Q ss_pred EEEEeecCCh
Q psy7789 92 TLLFSATMPK 101 (197)
Q Consensus 92 ~i~~SAT~~~ 101 (197)
++++|||...
T Consensus 159 ~l~lTaTp~~ 168 (494)
T 1wp9_A 159 VIGLTASPGS 168 (494)
T ss_dssp EEEEESCSCS
T ss_pred EEEEecCCCC
Confidence 9999999873
No 35
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.82 E-value=2.2e-19 Score=132.90 Aligned_cols=106 Identities=31% Similarity=0.559 Sum_probs=98.9
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++++..++||.+...+...+.++++|+|+||+++.+.+.+....+++++++|+||||++.+.++...+..++..++++.|
T Consensus 100 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 179 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQ 179 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCE
T ss_pred CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccce
Confidence 68899999999988888778888999999999999999988888999999999999999998999999999999998999
Q ss_pred EEEEeecCChhHHHHHHHhcCCCeEE
Q psy7789 92 TLLFSATMPKKIQNFARSALVKPITI 117 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~~~~~~i 117 (197)
++++|||+++++.+.++.++.+|..+
T Consensus 180 ~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 180 ILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999765
No 36
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.82 E-value=2.7e-20 Score=160.63 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc-cCCCccEEEeehhhhhhcCC-CHHHHHHHHhh---
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV-SLDVCRYLCLDEADRMVDMG-FEEDVRTIFSF--- 85 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~-~l~~l~~vViDEad~l~~~~-~~~~i~~i~~~--- 85 (197)
.|+++..++||.+...+...+..+++|+|+||++|...+..+.+ .+.++++||+||||++.+.. +...+...+..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~ 167 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG 167 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhc
Confidence 48999999999887777777767799999999999999988766 78999999999999998654 22222222222
Q ss_pred --ccCCceEEEEeecCC
Q psy7789 86 --FRGQRQTLLFSATMP 100 (197)
Q Consensus 86 --~~~~~q~i~~SAT~~ 100 (197)
.++.+|++++|||..
T Consensus 168 ~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 168 GSSGPLPQVIGLTASVG 184 (696)
T ss_dssp TCCSCCCEEEEEESCCC
T ss_pred ccCCCCCeEEEEeCccc
Confidence 246789999999986
No 37
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.81 E-value=2.2e-19 Score=132.98 Aligned_cols=109 Identities=38% Similarity=0.584 Sum_probs=100.8
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++++..++||.+...+.+.+.++++|+|+||+++...+....+.+++++++|+||||.+.++++...+..++..++++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~ 177 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSE
T ss_pred cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCe
Confidence 47889999999888888888788999999999999999888888999999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHhcCCCeEEEeC
Q psy7789 92 TLLFSATMPKKIQNFARSALVKPITINVG 120 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 120 (197)
++++|||+++++.++.+.++++|..+.+.
T Consensus 178 ~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 178 TLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp EEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999999999999888653
No 38
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.81 E-value=1.2e-19 Score=137.50 Aligned_cols=110 Identities=31% Similarity=0.550 Sum_probs=89.2
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcC-CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKG-CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~-~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
.++++..++||.+...+...+..+ ++|+|+||++|.+++....+.+++++++|+||||++.+++|...+..+++.++..
T Consensus 125 ~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 204 (237)
T 3bor_A 125 MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTS 204 (237)
T ss_dssp TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCC
Confidence 368889999998887777777555 9999999999999998888889999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeC
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVG 120 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 120 (197)
.|++++|||+++++.+.++.++++|..+.+.
T Consensus 205 ~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 205 IQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999888664
No 39
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.81 E-value=4.8e-20 Score=137.94 Aligned_cols=110 Identities=31% Similarity=0.527 Sum_probs=100.2
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++++..++||.+...+.+.+..+++|+|+||+++.+.+.+..+.+++++++|+||||++.++++...+..+++.+++..|
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 104 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQ 183 (219)
T ss_dssp CCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCE
T ss_pred ceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccE
Confidence 68899999998877766666678999999999999999888888899999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHhcCCCeEEEeCC
Q psy7789 92 TLLFSATMPKKIQNFARSALVKPITINVGR 121 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 121 (197)
++++|||+++++.++++.++++|..+.+..
T Consensus 184 ~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 184 MLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999887753
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.81 E-value=3.6e-20 Score=159.78 Aligned_cols=184 Identities=13% Similarity=0.211 Sum_probs=133.1
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHH-HHHHhcC------CccCCCccEEEeehhhhhhcC----------
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRL-MDMLDKK------MVSLDVCRYLCLDEADRMVDM---------- 73 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l-~~~l~~~------~~~l~~l~~vViDEad~l~~~---------- 73 (197)
.|+++.+++||.+...+. ...++||++|||++| ++++... .+.++.++++|+||||.++.+
T Consensus 179 lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg 256 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISG 256 (922)
T ss_dssp TTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEE
T ss_pred cCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecC
Confidence 489999999998754333 333599999999999 7877643 466889999999999999832
Q ss_pred ------CCHHHHHHHHhhcc---------CCceEE-----------------EEeecCChhHHHH-----HHHhcC-C--
Q psy7789 74 ------GFEEDVRTIFSFFR---------GQRQTL-----------------LFSATMPKKIQNF-----ARSALV-K-- 113 (197)
Q Consensus 74 ------~~~~~i~~i~~~~~---------~~~q~i-----------------~~SAT~~~~~~~~-----~~~~~~-~-- 113 (197)
+|...+..|+..++ +..|+. ++|||.++....+ +..++. +
T Consensus 257 ~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~d 336 (922)
T 1nkt_A 257 PADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKD 336 (922)
T ss_dssp ECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTT
T ss_pred CCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccc
Confidence 47789999999998 678998 8999987533332 122222 1
Q ss_pred -----CeEEEeC-----------------------------CCCccCccee-----------------------------
Q psy7789 114 -----PITINVG-----------------------------RAGAASMNVV----------------------------- 130 (197)
Q Consensus 114 -----~~~i~~~-----------------------------~~~~~~~~i~----------------------------- 130 (197)
...+.+. .+......++
T Consensus 337 YiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY 416 (922)
T 1nkt_A 337 YIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY 416 (922)
T ss_dssp EEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh
Confidence 1111111 1111111111
Q ss_pred ------------------EEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 131 ------------------QEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 131 ------------------~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
..++++...+|...+.+.+.. .+.|+||||+|++.++.+++.|++.|+++..+||++.+
T Consensus 417 ~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~ 496 (922)
T 1nkt_A 417 KLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHE 496 (922)
T ss_dssp CCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHH
T ss_pred CCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhH
Confidence 124566778899999888864 34589999999999999999999999999999999887
Q ss_pred hhhhhhh
Q psy7789 190 QNNQTLE 196 (197)
Q Consensus 190 ~~R~~i~ 196 (197)
.+|+.+.
T Consensus 497 rEa~iia 503 (922)
T 1nkt_A 497 QEATIIA 503 (922)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776553
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=3.7e-19 Score=164.91 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=125.4
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhhcCCCHHHHHHHHh---
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMVDMGFEEDVRTIFS--- 84 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~~~~~~~~i~~i~~--- 84 (197)
+.|++|..++||.+...+. ..+++|+|+|||++..++++.. ..++++++||+||+|.+.+ .++..++.++.
T Consensus 160 ~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~ 235 (1724)
T 4f92_B 160 TYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAI 235 (1724)
T ss_dssp TTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHH
Confidence 3589999999998755432 2359999999999977776543 2478999999999998865 57777766654
Q ss_pred ----hccCCceEEEEeecCChhHHHHHHHhcCCC-eEEEeCCCCccCcceeEEEEEcCchh---hHHH----HHHHhhcC
Q psy7789 85 ----FFRGQRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGAASMNVVQEVEYVKQEA---KIVY----LLECLQKT 152 (197)
Q Consensus 85 ----~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~i~~~~~~~~~~~---k~~~----l~~~l~~~ 152 (197)
..++..|++++|||++ +..++++++..++ ..+...+....+..+.+.++...+.. +... +.+.+.+.
T Consensus 236 ~~~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (1724)
T 4f92_B 236 RNIEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH 314 (1724)
T ss_dssp HHHHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 3467889999999997 4566665544332 22223333334445666555443322 1222 22233332
Q ss_pred --CCCEEEEecccccHHHHHHHHHhC-------------------------------------CCCeEeecCCCChhhhh
Q psy7789 153 --EPPVLIFAEKKQDVDAIHEYLLLK-------------------------------------GKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 153 --~~~~lIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~R~ 193 (197)
++++||||+|++.|+.+|..|.+. ...++++||||++++|+
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 458999999999999999888531 12378999999999999
Q ss_pred hhhC
Q psy7789 194 TLEN 197 (197)
Q Consensus 194 ~i~~ 197 (197)
.|++
T Consensus 395 ~vE~ 398 (1724)
T 4f92_B 395 LVED 398 (1724)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.80 E-value=9.6e-19 Score=146.68 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=71.7
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc-cCCCccEEEeehhhhhhcCC-CHHHHHHHHhhc---
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV-SLDVCRYLCLDEADRMVDMG-FEEDVRTIFSFF--- 86 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~-~l~~l~~vViDEad~l~~~~-~~~~i~~i~~~~--- 86 (197)
|+++..++||.+...+...+..+++|+|+||++|...+....+ .+.+++++|+||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 7999999999988777777777799999999999999988777 78999999999999998764 233333333322
Q ss_pred --cCCceEEEEeecCCh
Q psy7789 87 --RGQRQTLLFSATMPK 101 (197)
Q Consensus 87 --~~~~q~i~~SAT~~~ 101 (197)
.+.+|++++|||.+.
T Consensus 160 ~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CCSCCCEEEEEESCCCC
T ss_pred ccCCCCeEEEEecCccc
Confidence 246799999999853
No 43
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.80 E-value=2e-19 Score=135.59 Aligned_cols=107 Identities=30% Similarity=0.558 Sum_probs=97.7
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC-CHHHHHHHHhhccCCc
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG-FEEDVRTIFSFFRGQR 90 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~-~~~~i~~i~~~~~~~~ 90 (197)
++++..++||.+...+.+.+. +++|+|+||+++.+.+..+.+.+++++++|+||||++++++ |...+..+++.+++..
T Consensus 121 ~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~ 199 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK 199 (230)
T ss_dssp TCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSC
T ss_pred CceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCC
Confidence 789999999998877766654 69999999999999998888888999999999999999987 9999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEe
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINV 119 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 119 (197)
|++++|||+++++.+.+..++++|..+.+
T Consensus 200 ~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 200 QMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999988765
No 44
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.80 E-value=2.6e-19 Score=134.18 Aligned_cols=112 Identities=28% Similarity=0.551 Sum_probs=90.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
.++++..++||.+...+.+.+.+ ++|+|+||+++...+.+....+++++++|+||||++.++++...+..++..+++..
T Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 109 MDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp SCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred cCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 47899999999887777666655 99999999999999988888899999999999999999999999999999999999
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCC
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAG 123 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (197)
|++++|||+++++.+.++.++++|..+.+....
T Consensus 188 ~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 188 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp EEEEEESSCCHHHHHHHHHHCSSCEEEC-----
T ss_pred eEEEEEeecCHHHHHHHHHHCCCCEEEEecCCc
Confidence 999999999999999999999999988776443
No 45
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=136.06 Aligned_cols=105 Identities=35% Similarity=0.576 Sum_probs=95.7
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC-CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK-MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~-~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
.++++..++||.....+...+..+++|+|+||+++...+... .+.+++++++|+||||++++++|...+..+++.+++.
T Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 232 (262)
T 3ly5_A 153 HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 232 (262)
T ss_dssp CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSS
T ss_pred cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCC
Confidence 478899999999988888888888999999999999988764 4678999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCe
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPI 115 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~ 115 (197)
+|++++|||+++++.++++.+++++.
T Consensus 233 ~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 233 RQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred CeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999987653
No 46
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=132.92 Aligned_cols=110 Identities=35% Similarity=0.563 Sum_probs=96.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcC-CccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCC
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKK-MVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~-~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~ 89 (197)
.++++..++||.+...+...+ ++++|+|+||+++.+.+... .+.+++++++|+||||++.+++|...+..++..+++.
T Consensus 124 ~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~ 202 (236)
T 2pl3_A 124 HDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK 202 (236)
T ss_dssp SSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTT
T ss_pred CCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCC
Confidence 468999999998877776666 46999999999999988754 5678999999999999999999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCC
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGR 121 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 121 (197)
.|++++|||+++++.++.+.++++|..+.+.+
T Consensus 203 ~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 203 RQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp SEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred CeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999999999999887753
No 47
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=139.99 Aligned_cols=107 Identities=28% Similarity=0.457 Sum_probs=95.5
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc-CCccCCCccEEEeehhhhhhc-CCCHHHHHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK-KMVSLDVCRYLCLDEADRMVD-MGFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~vViDEad~l~~-~~~~~~i~~i~~~~~~~ 89 (197)
++++..++||....... ..+++|+||||++|.+++.+ +.++++++++||+||||++++ .+|...+..+++.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~ 267 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267 (300)
T ss_dssp TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTT
T ss_pred CcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCC
Confidence 68899999998755443 45689999999999999965 567889999999999999997 68999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCC
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGR 121 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 121 (197)
+|+++||||+++++..+++.++++|..|.+..
T Consensus 268 ~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp CEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999999999999999999998764
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.78 E-value=1.2e-18 Score=161.52 Aligned_cols=182 Identities=9% Similarity=0.102 Sum_probs=122.8
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhc--CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhh---
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDK--KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSF--- 85 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~--- 85 (197)
.|++|..++|+.+.+.. .+ .+++|+|||||++..++++ ....++++++||+||+|.+.+. .+..+..++.+
T Consensus 1000 ~g~~V~~ltGd~~~~~~--~~-~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1000 LNKKVVLLTGETSTDLK--LL-GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRY 1075 (1724)
T ss_dssp SCCCEEECCSCHHHHHH--HH-HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcchh--hc-CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHH
Confidence 48999999998654332 22 3489999999999888765 3344789999999999988764 66666655443
Q ss_pred ----ccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchh---h----HHHHHHHhhc--C
Q psy7789 86 ----FRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEA---K----IVYLLECLQK--T 152 (197)
Q Consensus 86 ----~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k----~~~l~~~l~~--~ 152 (197)
.++..|++++|||++ +..++++++..++..+........+..+..++....... + ...+...+.. .
T Consensus 1076 i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1154 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP 1154 (1724)
T ss_dssp HHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCS
T ss_pred HHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcC
Confidence 456889999999997 456777666554433333223333333444443332221 1 1222233332 3
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----------------------------------CCCeEeecCCCChhhhhhhhC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----------------------------------GKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.+++||||+|++.|+.+|..|... ...++.+||+|++++|+.|++
T Consensus 1155 ~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B 1155 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred CCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence 468999999999999998876321 124889999999999999873
No 49
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.78 E-value=2.1e-18 Score=151.01 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=67.4
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc-cCCCccEEEeehhhhhhcCCCHHH-HHHHHhhc---
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV-SLDVCRYLCLDEADRMVDMGFEED-VRTIFSFF--- 86 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~-~l~~l~~vViDEad~l~~~~~~~~-i~~i~~~~--- 86 (197)
|+++..++||.+...+...+..+++|+|+||++|.+.+..+.+ .+.++++||+||||++.+.+.... +...+...
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 7999999999988877777777899999999999999988777 789999999999999987643322 22322221
Q ss_pred -cCCceEEEEeecCC
Q psy7789 87 -RGQRQTLLFSATMP 100 (197)
Q Consensus 87 -~~~~q~i~~SAT~~ 100 (197)
.+.+|++++|||.+
T Consensus 404 ~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 404 ASQLPQILGLTASVG 418 (797)
T ss_dssp CCCCCEEEEEESCCC
T ss_pred CCCCCeEEEEcCCcc
Confidence 45689999999985
No 50
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=1.2e-18 Score=130.38 Aligned_cols=107 Identities=30% Similarity=0.578 Sum_probs=97.2
Q ss_pred CeeEEEEEcCCChHHhHHHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcC-CCHHHHHHHHhhccCC
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM-GFEEDVRTIFSFFRGQ 89 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~-~~~~~i~~i~~~~~~~ 89 (197)
++++..++||.+...+.+.+.. .++|+|+||+++...+.+..+.+++++++|+||||+++++ ++...+..+++.++++
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 190 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 190 (220)
T ss_dssp TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSS
T ss_pred CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCc
Confidence 7999999999998888777754 5899999999999999888888999999999999999874 6888999999999889
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEE
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITIN 118 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~ 118 (197)
.|++++|||+++++.++++.++++|..+.
T Consensus 191 ~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 191 KQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999999999999999999998775
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=155.66 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHH------hcCCccCCCccEEEeehhhhhhcCC-CHHHHHHH
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDML------DKKMVSLDVCRYLCLDEADRMVDMG-FEEDVRTI 82 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l------~~~~~~l~~l~~vViDEad~l~~~~-~~~~i~~i 82 (197)
+.++++..++|+.+...+...+.++++|+|+||++|...+ ....+.+.++++||+||||++...+ +...+...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred CcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 3358999999998877777777778999999999999988 4455778999999999999986533 33333322
Q ss_pred Hhh----cc---------CCceEEEEeecCCh
Q psy7789 83 FSF----FR---------GQRQTLLFSATMPK 101 (197)
Q Consensus 83 ~~~----~~---------~~~q~i~~SAT~~~ 101 (197)
+.. .. +.+|++++|||.+.
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccc
Confidence 222 11 57899999999985
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.77 E-value=8.1e-18 Score=151.77 Aligned_cols=174 Identities=14% Similarity=0.072 Sum_probs=126.2
Q ss_pred CCCeeEEEEEcCCChHHhH---HHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhh
Q psy7789 10 PIPLRTCLAIGGVPMNQSL---DVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSF 85 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~ 85 (197)
+.++++..++|+.+..++. +.+.. .++|+|+||+.+. +.+.++++++||+||+|++ .......++.
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~ 747 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHKERIKA 747 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc-----ChHHHHHHHH
Confidence 3478999999887655443 33444 5999999997553 4466899999999999995 3445566777
Q ss_pred ccCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEeccccc
Q psy7789 86 FRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQD 165 (197)
Q Consensus 86 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~ 165 (197)
++.+.|++++|||..+.........++++..+... ......+..++...........+...+. .+++++||||+++.
T Consensus 748 l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~~~i~~~il~~l~-~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 748 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDSMVVREAILREIL-RGGQVYYLYNDVEN 824 (1151)
T ss_dssp HHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCHHHHHHHHHHHHT-TTCEEEEECCCSSC
T ss_pred hcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCHHHHHHHHHHHHh-cCCeEEEEECCHHH
Confidence 77889999999999888777766666554443322 2222334554444343333344444333 34689999999999
Q ss_pred HHHHHHHHHhC--CCCeEeecCCCChhhhhhhh
Q psy7789 166 VDAIHEYLLLK--GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 166 ~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~i~ 196 (197)
++.+++.|++. ++++..+||+|++++|++++
T Consensus 825 ~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il 857 (1151)
T 2eyq_A 825 IQKAAERLAELVPEARIAIGHGQMRERELERVM 857 (1151)
T ss_dssp HHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 99999999987 88999999999999999876
No 53
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.76 E-value=6.6e-18 Score=149.97 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=66.5
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCc-cCCCccEEEeehhhhhhcCCC-HHHHHHHHhhc---
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMV-SLDVCRYLCLDEADRMVDMGF-EEDVRTIFSFF--- 86 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~-~l~~l~~vViDEad~l~~~~~-~~~i~~i~~~~--- 86 (197)
++++..++||.+...+...+..+++|+|+||++|.+.+....+ .+.+++++|+||||++.+.+. ...+..++...
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 7999999999987777666766799999999999999987776 789999999999999987642 22232333221
Q ss_pred -cCCceEEEEeecCC
Q psy7789 87 -RGQRQTLLFSATMP 100 (197)
Q Consensus 87 -~~~~q~i~~SAT~~ 100 (197)
.+.+|++++|||..
T Consensus 404 ~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 404 ASQLPQILGLTASVG 418 (936)
T ss_dssp CSCCCEEEEEESCCC
T ss_pred CCCcCeEEEecCCcc
Confidence 45689999999984
No 54
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.74 E-value=4.2e-18 Score=144.90 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=106.0
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
+.++...+|+.. ...+++|+|+||++| +.+..+.++++++||+||||++ +.++...+..+++.++...|
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCC
Confidence 344555666644 245699999999997 4567788899999999999765 44577888899999987776
Q ss_pred --EEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHH
Q psy7789 92 --TLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAI 169 (197)
Q Consensus 92 --~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l 169 (197)
++++|||+++.+. ...+....+..... ..+. ....... +-....+++||||||++.++.+
T Consensus 351 ~llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~i~----~~~~~~~------l~~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 351 RLVVLATATPPGSVT------VPHPNIEEVALSNT--GEIP----FYGKAIP------IEAIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp SEEEEEESSCTTCCC------CCCTTEEEEECBSC--SSEE----ETTEEEC------GGGSSSSEEEEECSCHHHHHHH
T ss_pred ceEEEECCCCCcccc------cCCcceEEEeeccc--chhH----HHHhhhh------hhhccCCcEEEEeCCHHHHHHH
Confidence 7788999986311 11222211110000 0010 0111101 0112456899999999999999
Q ss_pred HHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 170 HEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 170 ~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
++.|++.|+++..+||+|++++|.+
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~er~~ 437 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSVIPT 437 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGGSCS
T ss_pred HHHHHhCCCcEEEecCCCCHHHHHh
Confidence 9999999999999999999998753
No 55
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.72 E-value=9.7e-18 Score=127.38 Aligned_cols=112 Identities=21% Similarity=0.427 Sum_probs=89.4
Q ss_pred CeeEEEEEcCCChHHhH-HHHhcCCcEEEeCchHHHHHHhcC--CccCCCccEEEeehhhhhhc---CCCHHHHHHHHhh
Q psy7789 12 PLRTCLAIGGVPMNQSL-DVIKKGCHMMVATPGRLMDMLDKK--MVSLDVCRYLCLDEADRMVD---MGFEEDVRTIFSF 85 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~-~~l~~~~~Ili~TP~~l~~~l~~~--~~~l~~l~~vViDEad~l~~---~~~~~~i~~i~~~ 85 (197)
|+++..++||.....+. ....++++|+|+||+++.+++... .+.+++++++|+||||++++ .+|...+..++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~ 205 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLA 205 (245)
T ss_dssp CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHH
T ss_pred CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHh
Confidence 66777777665433322 222456899999999999999765 56789999999999999987 4688888888877
Q ss_pred cc-CCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCC
Q psy7789 86 FR-GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAG 123 (197)
Q Consensus 86 ~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (197)
+. +..|++++|||+++++..+++.++++|..+.+...+
T Consensus 206 ~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 244 (245)
T 3dkp_A 206 CTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARN 244 (245)
T ss_dssp CCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC--
T ss_pred cCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 64 578999999999999999999999999999887543
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.71 E-value=8.8e-17 Score=140.00 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=110.7
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhh-hhcCC-CHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhc
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR-MVDMG-FEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSAL 111 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~-l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 111 (197)
+++|+++|||++...+... ..+.++++||+||+|. .++.. ....+..+.... ++.|++++|||++.+ .+ ..++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~ 259 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KF-QRYF 259 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HH-HHHT
T ss_pred CCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HH-HHHh
Confidence 5899999999999887654 3589999999999996 44422 233444544443 578999999999743 33 3455
Q ss_pred CCCeEEEeCCCCccCcceeEEEEEcCchhhH----HHHHHHhhc-CCCCEEEEecccccHHHHHHHHHh-----------
Q psy7789 112 VKPITINVGRAGAASMNVVQEVEYVKQEAKI----VYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLL----------- 175 (197)
Q Consensus 112 ~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~~l~~-~~~~~lIF~~s~~~~~~l~~~L~~----------- 175 (197)
.++..+.+.... ..+.+++......++. ..+.++... .++++||||++++.++.+++.|.+
T Consensus 260 ~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~ 336 (773)
T 2xau_A 260 NDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGC 336 (773)
T ss_dssp TSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccC
Confidence 555555554332 2355555444444443 333444433 457999999999999999999985
Q ss_pred CCCCeEeecCCCChhhhhhhhC
Q psy7789 176 KGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 176 ~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
.++.+..+||+|++++|+++++
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~ 358 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFE 358 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGS
T ss_pred CCeEEEEeCCCCCHHHHHHHHh
Confidence 5788999999999999998864
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.68 E-value=6.1e-17 Score=140.70 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=109.4
Q ss_pred CCeeEEEEEcCCChHHhH---HHHhc-CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 11 IPLRTCLAIGGVPMNQSL---DVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
.|++++.++||.+..++. +.+.. .++|+|+||+.+.+ .+.+++++++|+||+|++.... ...+...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q-----r~~l~~~ 513 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ-----REALMNK 513 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------CCCCSS
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH-----HHHHHHh
Confidence 479999999998766543 34444 49999999987754 4568899999999999973221 1222333
Q ss_pred cCCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhh---cCCCCEEEEeccc
Q psy7789 87 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVLIFAEKK 163 (197)
Q Consensus 87 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~lIF~~s~ 163 (197)
...+|++++|||..++..... +..+.....+.........+...+. ...+...+.+.+. ..+.+++|||+++
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~---~~~~~~~l~~~i~~~l~~g~qvlVf~~~i 588 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTMLV---PMDRVNEVYEFVRQEVMRGGQAFIVYPLI 588 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECCC---CSSTHHHHHHHHHHHTTTSCCBCCBCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEEe---ccchHHHHHHHHHHHHhcCCcEEEEecch
Confidence 457899999999877655433 2333222222221111222333222 2233344444443 2356899999966
Q ss_pred --------ccHHHHHHHHHh---CCCCeEeecCCCChhhhhhhh
Q psy7789 164 --------QDVDAIHEYLLL---KGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 164 --------~~~~~l~~~L~~---~~~~~~~~h~~~~~~~R~~i~ 196 (197)
..++.+++.|++ .++++..+||+|++++|++++
T Consensus 589 e~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 589 EESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp --------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 457889999988 478999999999999999876
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.64 E-value=1e-16 Score=133.69 Aligned_cols=174 Identities=10% Similarity=0.089 Sum_probs=115.1
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++++..++||.+...+ +..+++|+|+||+.+.. .....++++++||+||||++.. ..+..+++.+++..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 5788889998776655 45569999999996543 3345678899999999999854 567788888888899
Q ss_pred EEEEeecCChhHHHHHH-HhcCCCeEEEeCCCC------ccCcceeEEEEEcC---------------------chhhHH
Q psy7789 92 TLLFSATMPKKIQNFAR-SALVKPITINVGRAG------AASMNVVQEVEYVK---------------------QEAKIV 143 (197)
Q Consensus 92 ~i~~SAT~~~~~~~~~~-~~~~~~~~i~~~~~~------~~~~~i~~~~~~~~---------------------~~~k~~ 143 (197)
++++|||.+........ ..+..+......... ..+..+.......+ ...+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999655322111 112233332222211 11111111111111 122344
Q ss_pred HHHHHhhcC---CC-CEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 144 YLLECLQKT---EP-PVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 144 ~l~~~l~~~---~~-~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+.+++... ++ +++|||+ .+.++.+++.|.+.+.++..+||+|++++|++++
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~ 390 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMK 390 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHH
Confidence 455555543 33 4566666 8999999999999988999999999999999875
No 59
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.58 E-value=9.1e-17 Score=132.00 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=85.7
Q ss_pred EEeCchHHHHHHhcCCc--------cCCCccEEEeehhhhhhcCCCHHHHHHHHhhc-cCCceEEEEeecCChhHHHHHH
Q psy7789 38 MVATPGRLMDMLDKKMV--------SLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF-RGQRQTLLFSATMPKKIQNFAR 108 (197)
Q Consensus 38 li~TP~~l~~~l~~~~~--------~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~ 108 (197)
.++||+++.+++..+.+ .+++++++|+||+|++ +.++...+..+.+.. +.++|+++||||+++.+..+..
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh
Confidence 48888777655443322 3789999999999998 333333333333333 3579999999999876432221
Q ss_pred HhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCC
Q psy7789 109 SALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKE 188 (197)
Q Consensus 109 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 188 (197)
. ..+ +......+....+ ..+...+.+.++++||||++++.|+.+++.|++.|+++..+||
T Consensus 150 ~--~~~--------------~~~~~~~~~~~~~-~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg--- 209 (440)
T 1yks_A 150 S--NGE--------------IEDVQTDIPSEPW-NTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR--- 209 (440)
T ss_dssp C--SSC--------------EEEEECCCCSSCC-SSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS---
T ss_pred c--CCC--------------eeEeeeccChHHH-HHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc---
Confidence 1 011 1111111121111 1122334445679999999999999999999999999999999
Q ss_pred hhhhhhhh
Q psy7789 189 DQNNQTLE 196 (197)
Q Consensus 189 ~~~R~~i~ 196 (197)
++|++++
T Consensus 210 -~~R~~~~ 216 (440)
T 1yks_A 210 -KTFEREY 216 (440)
T ss_dssp -SSCC---
T ss_pred -hhHHHHH
Confidence 3565554
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.57 E-value=9.4e-16 Score=130.58 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=92.2
Q ss_pred EEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeecCChhHHHHHHHhcCCCe
Q psy7789 37 MMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALVKPI 115 (197)
Q Consensus 37 Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~ 115 (197)
+.++|.+.+...+... ..+++++++|+||||++ +.++...+..+.+.++ ++.|+++||||++..+..+.. .++.
T Consensus 257 i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~ 331 (618)
T 2whx_A 257 VDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSP 331 (618)
T ss_dssp EEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSC
T ss_pred EEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCc
Confidence 3344444444433322 23789999999999998 5457777888877775 689999999999876443221 2333
Q ss_pred EEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 116 TINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 116 ~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+.+.... +. .+...+...+.+..+++||||+|++.|+.+++.|++.|+++..+||+ +|+++
T Consensus 332 ~~~v~~~~-------------~~-~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~ 393 (618)
T 2whx_A 332 IEDIEREI-------------PE-RSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTE 393 (618)
T ss_dssp EEEEECCC-------------CS-SCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHH
T ss_pred eeeecccC-------------CH-HHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHH
Confidence 33332211 00 11122333444456799999999999999999999999999999985 55554
Q ss_pred h
Q psy7789 196 E 196 (197)
Q Consensus 196 ~ 196 (197)
+
T Consensus 394 l 394 (618)
T 2whx_A 394 Y 394 (618)
T ss_dssp T
T ss_pred H
Confidence 4
No 61
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.56 E-value=7e-15 Score=120.45 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=88.2
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhc-cCCceEEEEeecCChhHHHHHHHhcC
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~ 112 (197)
+.-+.+.|.+.+.+.+.. ...+++++++|+||+|++ +.++......+.... +.++|++++|||+++.+..+... +
T Consensus 70 ~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~ 145 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS--N 145 (431)
T ss_dssp CCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--S
T ss_pred CceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--C
Confidence 355667788888776655 455899999999999997 322333333333332 46899999999998642211100 1
Q ss_pred CCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCC
Q psy7789 113 KPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSL 186 (197)
Q Consensus 113 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 186 (197)
.| +.......+ ..+...+.+.+.+.++++||||++++.|+.+++.|++.|+++..+||+
T Consensus 146 ~~--------------i~~~~~~~~-~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~ 204 (431)
T 2v6i_A 146 SP--------------IIDEETRIP-DKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK 204 (431)
T ss_dssp SC--------------CEEEECCCC-SSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred Cc--------------eeeccccCC-HHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 11 111000011 112233344555667799999999999999999999999999999997
No 62
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.56 E-value=4.7e-15 Score=122.14 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=93.0
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHh-hccCCceEEEEeecCChhHHHHHHHhcC
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFS-FFRGQRQTLLFSATMPKKIQNFARSALV 112 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~-~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 112 (197)
+..|.++||+.+.+.+... ..+++++++|+||||++ +.++...+..+.. ..+++.|+++||||+++.... .+..
T Consensus 87 ~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~ 161 (451)
T 2jlq_A 87 REIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FPQS 161 (451)
T ss_dssp SCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SCCC
T ss_pred CceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---hhcC
Confidence 3578899999998877644 45789999999999987 3223333333322 234589999999999865433 2233
Q ss_pred CCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 113 KPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 113 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
++..+.+..... .. ....+.+.+....+++||||+|++.|+.+++.|++.|+++..+||++.++
T Consensus 162 ~~~~~~~~~~~p--~~------------~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~ 225 (451)
T 2jlq_A 162 NSPIEDIEREIP--ER------------SWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDT 225 (451)
T ss_dssp SSCEEEEECCCC--SS------------CCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHH
T ss_pred CCceEecCccCC--ch------------hhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHH
Confidence 443333321110 00 00112334445567999999999999999999999999999999987643
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.54 E-value=2.1e-14 Score=123.07 Aligned_cols=160 Identities=10% Similarity=0.006 Sum_probs=110.4
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCc
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQR 90 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~ 90 (197)
|+++..++||....... -....+++++|++.+. ....++++|+||||++.+.+++..+..++..++ ...
T Consensus 203 g~~v~lltG~~~~iv~T--pGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i 272 (677)
T 3rc3_A 203 GVPCDLVTGEERVTVQP--NGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEV 272 (677)
T ss_dssp TCCEEEECSSCEECCST--TCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCeeEEecC--CCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccce
Confidence 78888999986651100 0112678888875443 246779999999999999899999999988887 678
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIH 170 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~ 170 (197)
|++++|||. +.+....... .....+...... .+ .. + .. .. +..+....+..+|||+|++.++.++
T Consensus 273 ~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~r~-~~--l~---~-~~--~~----l~~l~~~~~g~iIf~~s~~~ie~la 337 (677)
T 3rc3_A 273 HLCGEPAAI-DLVMELMYTT-GEEVEVRDYKRL-TP--IS---V-LD--HA----LESLDNLRPGDCIVCFSKNDIYSVS 337 (677)
T ss_dssp EEEECGGGH-HHHHHHHHHH-TCCEEEEECCCS-SC--EE---E-CS--SC----CCSGGGCCTTEEEECSSHHHHHHHH
T ss_pred EEEeccchH-HHHHHHHHhc-CCceEEEEeeec-ch--HH---H-HH--HH----HHHHHhcCCCCEEEEcCHHHHHHHH
Confidence 999999995 3344444443 333333221111 00 00 0 00 00 0122333456799999999999999
Q ss_pred HHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 171 EYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 171 ~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.|.+.|+.+..+||+|++++|++++
T Consensus 338 ~~L~~~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 338 RQIEIRGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred HHHHhcCCCeeeeeccCCHHHHHHHH
Confidence 99999999999999999999999875
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.52 E-value=1.4e-15 Score=125.68 Aligned_cols=163 Identities=17% Similarity=0.092 Sum_probs=108.3
Q ss_pred Cee-EEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 12 PLR-TCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 12 ~i~-~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
|++ +..++|+... .++|+|+||+.+...+.. ..++++++|+||||.+.+.++.. +.+.+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 677 7778777643 489999999998876642 12568999999999998877764 44455 468
Q ss_pred eEEEEeecCCh-------------------hHHHHHHHhcCCCeE--EEeCCCCc------------------------c
Q psy7789 91 QTLLFSATMPK-------------------KIQNFARSALVKPIT--INVGRAGA------------------------A 125 (197)
Q Consensus 91 q~i~~SAT~~~-------------------~~~~~~~~~~~~~~~--i~~~~~~~------------------------~ 125 (197)
+++++|||... ...+....++.++.. +.+..... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 89999999862 223332223333222 11110000 0
Q ss_pred CcceeEE---------------------EEEcCchhhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCCeEee
Q psy7789 126 SMNVVQE---------------------VEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTL 183 (197)
Q Consensus 126 ~~~i~~~---------------------~~~~~~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~ 183 (197)
.....+. ...+....|...+.++++.. +.++||||++.+.++.+++.|. +..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~ 374 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAI 374 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBC
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----ccee
Confidence 0000000 00123456778888888775 4689999999999999999884 6689
Q ss_pred cCCCChhhhhhhh
Q psy7789 184 KSLKEDQNNQTLE 196 (197)
Q Consensus 184 h~~~~~~~R~~i~ 196 (197)
||++++++|++++
T Consensus 375 ~g~~~~~~R~~~~ 387 (472)
T 2fwr_A 375 THRTSREEREEIL 387 (472)
T ss_dssp CSSSCSHHHHTHH
T ss_pred eCCCCHHHHHHHH
Confidence 9999999999875
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.50 E-value=2.5e-15 Score=128.92 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=77.1
Q ss_pred cCCCccEEEeehhhhhhcCCCHHHHHHHHhhcc-CCceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEE
Q psy7789 55 SLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEV 133 (197)
Q Consensus 55 ~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~ 133 (197)
.++++++||+||||++ +..+...+..+....+ ...|+++||||+++.+..+... +.+ +....
T Consensus 329 ~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~--------------i~~v~ 391 (673)
T 2wv9_A 329 RVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSP--------------VHDVS 391 (673)
T ss_dssp CCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEE
T ss_pred ccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCc--------------eEEEe
Confidence 5789999999999998 2212233333434443 6789999999998663321110 111 11111
Q ss_pred EEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 134 EYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 134 ~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
...... +...++..+.+..+++||||++++.|+.+++.|++.|+++..+||+ +|++++
T Consensus 392 ~~~~~~-~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~ 449 (673)
T 2wv9_A 392 SEIPDR-AWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEY 449 (673)
T ss_dssp CCCCSS-CCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHG
T ss_pred eecCHH-HHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHH
Confidence 111111 1112233444566799999999999999999999999999999994 666654
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.47 E-value=5.8e-14 Score=119.14 Aligned_cols=161 Identities=15% Similarity=0.118 Sum_probs=87.2
Q ss_pred cCCcEEEeCchHHHHHHhc----CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHH
Q psy7789 33 KGCHMMVATPGRLMDMLDK----KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFAR 108 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~----~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 108 (197)
.+++|+|+||++|...... ..+...++++||+||||++...+ ...+..+++.++ ..+++++|||..........
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~ 350 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLREDNRDTY 350 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTTTHHHH
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccccchhHH
Confidence 4589999999999987642 34456789999999999986532 345667777775 57899999997643222222
Q ss_pred HhcCCCe------------------EEEeCCCCcc-------------CcceeEEEEEcCc-------hhhHH----HHH
Q psy7789 109 SALVKPI------------------TINVGRAGAA-------------SMNVVQEVEYVKQ-------EAKIV----YLL 146 (197)
Q Consensus 109 ~~~~~~~------------------~i~~~~~~~~-------------~~~i~~~~~~~~~-------~~k~~----~l~ 146 (197)
.++.++. ...+...... ...+....+.... ..+.. .+.
T Consensus 351 ~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~ 430 (590)
T 3h1t_A 351 RYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLT 430 (590)
T ss_dssp HHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHH
T ss_pred HHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHH
Confidence 3333221 1111100000 0000000000000 11222 233
Q ss_pred HHhhcC--CCCEEEEecccccHHHHHHHHHhCCC--------CeEeecCCCChhhhhhhh
Q psy7789 147 ECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGK--------PFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 147 ~~l~~~--~~~~lIF~~s~~~~~~l~~~L~~~~~--------~~~~~h~~~~~~~R~~i~ 196 (197)
+.++.. .+++||||++++.|+.+++.|.+.+. .+..+||++++ +|++++
T Consensus 431 ~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l 489 (590)
T 3h1t_A 431 DFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHL 489 (590)
T ss_dssp HHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHH
T ss_pred HHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHH
Confidence 334432 36899999999999999999987543 37789999875 576654
No 67
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=99.93 Aligned_cols=89 Identities=55% Similarity=0.796 Sum_probs=67.1
Q ss_pred HHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCC
Q psy7789 108 RSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLK 187 (197)
Q Consensus 108 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 187 (197)
..++.+|..+.+......+.++.|.++.+.+++|...|.+++...++++||||+++..++.+++.|+..|+++..+||+|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~ 88 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGK 88 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTS
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 46788999999887777888999999999999999999999998888999999999999999999999999999999999
Q ss_pred Chhhhhhhh
Q psy7789 188 EDQNNQTLE 196 (197)
Q Consensus 188 ~~~~R~~i~ 196 (197)
++++|++++
T Consensus 89 ~~~~R~~~l 97 (191)
T 2p6n_A 89 DQEERTKAI 97 (191)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999875
No 68
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.44 E-value=1.4e-13 Score=118.14 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=90.4
Q ss_pred eCchHHHHHHhcCCccCCCccEEEeehhhhhhcC--CCHHH----HHHHHh------------------hccCCceEEEE
Q psy7789 40 ATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM--GFEED----VRTIFS------------------FFRGQRQTLLF 95 (197)
Q Consensus 40 ~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~--~~~~~----i~~i~~------------------~~~~~~q~i~~ 95 (197)
+||++|++++.+.. ++|+||+|++++. ++... ...... ..+...|++++
T Consensus 320 ~tpg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 89999999975433 8999999997631 11111 111111 11246799999
Q ss_pred eecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHHHH
Q psy7789 96 SATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEY 172 (197)
Q Consensus 96 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~ 172 (197)
|||.++..... ........+.......+. +...+...+...++..+.. .+.++||||+|++.|+.+++.
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~ 464 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPTGLLDPL----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDY 464 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeecccCCCCCe----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHH
Confidence 99997654222 122222212211111111 1112333455555555543 346899999999999999999
Q ss_pred HHhCCCCeEeecCCCChhhhhhhh
Q psy7789 173 LLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 173 L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|++.|+++..+||+|++.+|.+++
T Consensus 465 L~~~gi~~~~lh~~~~~~~R~~~l 488 (661)
T 2d7d_A 465 LKEIGIKVNYLHSEIKTLERIEII 488 (661)
T ss_dssp HHHTTCCEEEECTTCCHHHHHHHH
T ss_pred HHhcCCCeEEEeCCCCHHHHHHHH
Confidence 999999999999999999999875
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.43 E-value=3.7e-14 Score=117.06 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=79.7
Q ss_pred cEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh-----hcCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHh
Q psy7789 36 HMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM-----VDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSA 110 (197)
Q Consensus 36 ~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l-----~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 110 (197)
-+.++|.+.+...+... ..++++++||+||||.+ +..++..... .+++.|+++||||+++.+..+...
T Consensus 91 ~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~~~- 163 (459)
T 2z83_A 91 IVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFPDS- 163 (459)
T ss_dssp SEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSCCC-
T ss_pred EEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhccC-
Confidence 34556666555544432 35789999999999984 2222222111 136889999999998654322111
Q ss_pred cCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCC
Q psy7789 111 LVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSL 186 (197)
Q Consensus 111 ~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 186 (197)
..|+..... ..+ ..+...+.+.+....+++||||+|++.|+.+++.|++.|+++..+||+
T Consensus 164 -~~pi~~~~~--------------~~~-~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 164 -NAPIHDLQD--------------EIP-DRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp -SSCEEEEEC--------------CCC-SSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred -CCCeEEecc--------------cCC-cchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 223222111 001 111111233445557899999999999999999999999999999995
No 70
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.38 E-value=1.2e-12 Score=112.42 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=89.4
Q ss_pred eCchHHHHHHhcCCccCCCccEEEeehhhhhhcC--CCHHH----HHHHHh------------------hccCCceEEEE
Q psy7789 40 ATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDM--GFEED----VRTIFS------------------FFRGQRQTLLF 95 (197)
Q Consensus 40 ~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~--~~~~~----i~~i~~------------------~~~~~~q~i~~ 95 (197)
+||++|++++.+. .+||+||+|++.+. ++... ...... ..+...|++++
T Consensus 314 ~tp~~LlDyl~~~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 386 (664)
T 1c4o_A 314 EPPYTLLDYFPED-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFV 386 (664)
T ss_dssp SCCCCGGGGSCTT-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEE
T ss_pred CCchHHHHHHhhc-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEE
Confidence 8999999987533 28999999997631 01111 111111 11246799999
Q ss_pred eecCChhHHHHHHHhcCCCeEEEeC--CCCccCcceeEEEEEcCchhhHHHHHHHhhc---CCCCEEEEecccccHHHHH
Q psy7789 96 SATMPKKIQNFARSALVKPITINVG--RAGAASMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIH 170 (197)
Q Consensus 96 SAT~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~ 170 (197)
|||.++..... .. ..+... ......+. +...+...+...++..+.. .+.++||||+|++.++.++
T Consensus 387 SAT~~~~~~~~----~~--~~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~ 456 (664)
T 1c4o_A 387 SATPGPFELAH----SG--RVVEQIIRPTGLLDPL----VRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELT 456 (664)
T ss_dssp ESSCCHHHHHH----CS--EEEEECSCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred ecCCCHHHHHh----hh--CeeeeeeccCCCCCCe----EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHH
Confidence 99998653221 11 112221 11111111 1112333455555555543 3568999999999999999
Q ss_pred HHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 171 EYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 171 ~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.|.+.|+++..+||+|++.+|.+++
T Consensus 457 ~~L~~~gi~~~~lh~~~~~~~R~~~~ 482 (664)
T 1c4o_A 457 SFLVEHGIRARYLHHELDAFKRQALI 482 (664)
T ss_dssp HHHHHTTCCEEEECTTCCHHHHHHHH
T ss_pred HHHHhcCCCceeecCCCCHHHHHHHH
Confidence 99999999999999999999999875
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.38 E-value=3e-12 Score=106.45 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=47.7
Q ss_pred hhHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhC-CCCeEeecCCCChhhhhhhh
Q psy7789 140 AKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK-GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 140 ~k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~R~~i~ 196 (197)
.|...+.+++.+ .+.++||||++...++.+++.|... |+++..+||+|++++|++++
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 355555666654 3569999999999999999999986 99999999999999999875
No 72
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=97.89 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=58.8
Q ss_pred cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh-hcCCCH-HHHHHHHhhccCCceEEEEeecCChhHHHHHHHh
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM-VDMGFE-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSA 110 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l-~~~~~~-~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 110 (197)
.+++|+|+||+++.+.+.. .+++++++|+||||.+ ++.++. ..++.++... ++.|++++|||++.+. +.+.+
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~ 227 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYF 227 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHT
T ss_pred CCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHc
Confidence 3488999999999999875 4899999999999985 555555 4566666665 4789999999999776 44444
Q ss_pred cCCC
Q psy7789 111 LVKP 114 (197)
Q Consensus 111 ~~~~ 114 (197)
..+|
T Consensus 228 ~~~p 231 (235)
T 3llm_A 228 FNCP 231 (235)
T ss_dssp TSCC
T ss_pred CCCC
Confidence 4444
No 73
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=95.56 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCC------ccCCCccEEEeehhhhhhcCCCHHHH-HHHH
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKM------VSLDVCRYLCLDEADRMVDMGFEEDV-RTIF 83 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~------~~l~~l~~vViDEad~l~~~~~~~~i-~~i~ 83 (197)
.++++..++|+.....+...+..+++|+|+||+++...+.... ..+.+++++|+||||++.+.++...+ ..++
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 3688888999887666665565679999999999999887643 56789999999999999876655544 3332
Q ss_pred hhc-------------cCCceEEEEeec
Q psy7789 84 SFF-------------RGQRQTLLFSAT 98 (197)
Q Consensus 84 ~~~-------------~~~~q~i~~SAT 98 (197)
... .+.++++++|||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 221 157899999998
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.24 E-value=8.8e-12 Score=111.17 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=52.4
Q ss_pred chhhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHh-CCCCeEeecCCCChhhhhhhh
Q psy7789 138 QEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLL-KGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~R~~i~ 196 (197)
...|...+.++++.. +.++||||+++..++.+++.|.+ .|+++..+||+|++++|++++
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l 547 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAA 547 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 345888899999865 46999999999999999999995 599999999999999999876
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.20 E-value=5e-11 Score=84.88 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=66.2
Q ss_pred ccCcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 124 AASMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 124 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
..+.++.|.++.++.++|...|.++++..+ +++||||++++.++.+++.|.+.|+++..+||+|++++|++++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 78 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVM 78 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 455679999999999999999999998654 5899999999999999999999999999999999999999875
No 76
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.19 E-value=6.2e-11 Score=85.17 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=64.6
Q ss_pred CcceeEEEEEcCchhhHHHHHHHhhcCC-CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 126 SMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 126 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+..+.|+++.+..++|...|.++++... +++||||+++..++.+++.|...|+++..+||+|++++|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 4678999999999999999999998764 5899999999999999999999999999999999999999875
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.18 E-value=5.5e-11 Score=86.50 Aligned_cols=76 Identities=24% Similarity=0.443 Sum_probs=59.2
Q ss_pred CCCccCcceeEEEEEcCchhhHHHHHHHhhcC--CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 121 RAGAASMNVVQEVEYVKQEAKIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 121 ~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.....++++.|.++.++..+|...|.++++.. ++++||||++++.++.+++.|+..|+++..+||+|++++|++++
T Consensus 12 ~~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~ 89 (185)
T 2jgn_A 12 FQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 89 (185)
T ss_dssp ----CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHH
T ss_pred ccCCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHH
Confidence 34456788999999999999999999999876 46899999999999999999999999999999999999998875
No 78
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.17 E-value=1e-10 Score=104.49 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=57.7
Q ss_pred cCCChHHhHHHHh-cCCcEEEeCchHHHHHHhcCC--ccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 20 GGVPMNQSLDVIK-KGCHMMVATPGRLMDMLDKKM--VSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 20 gg~~~~~~~~~l~-~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
|+.+.....+.+. .+++|+|+||+++...+.... ..++...+||+||||++.. ......+.+.+| ++++++||
T Consensus 360 ~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfT 435 (1038)
T 2w00_A 360 GSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFK-RYYQFGFT 435 (1038)
T ss_dssp SSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCS-SEEEEEEE
T ss_pred cccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHHhCC-cccEEEEe
Confidence 4445555556664 469999999999999876432 2456788999999999753 344567777775 58999999
Q ss_pred ecCCh
Q psy7789 97 ATMPK 101 (197)
Q Consensus 97 AT~~~ 101 (197)
||...
T Consensus 436 ATP~~ 440 (1038)
T 2w00_A 436 GTPIF 440 (1038)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 99753
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=9.4e-11 Score=84.37 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=65.4
Q ss_pred cCcceeEEEEEcCchh-hHHHHHHHhhcCC-CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 125 ASMNVVQEVEYVKQEA-KIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 125 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.+.++.|+++.++..+ |...|.++++..+ +++||||++++.|+.+++.|...|+++..+||+|++++|++++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASII 77 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 4578999999998765 9999999998764 5899999999999999999999999999999999999999875
No 80
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.16 E-value=2.4e-09 Score=93.14 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=57.3
Q ss_pred eEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcCchhhHHHHHHHhhcC---CCCEEEEecccccHH
Q psy7789 91 QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVD 167 (197)
Q Consensus 91 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~ 167 (197)
.+.+||.|...+..++.+.|.-+ .+.++........-..-.++....+|...+.+-+.+. +.|+||+|.|++.++
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE 457 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSE 457 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHH
Confidence 45678888877777777777555 3444433222222223345677888988888777643 568999999999999
Q ss_pred HHHHHHH
Q psy7789 168 AIHEYLL 174 (197)
Q Consensus 168 ~l~~~L~ 174 (197)
.+++.|+
T Consensus 458 ~LS~~L~ 464 (997)
T 2ipc_A 458 RLSQMLK 464 (997)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999999
No 81
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.4e-10 Score=98.54 Aligned_cols=56 Identities=27% Similarity=0.370 Sum_probs=48.3
Q ss_pred hHHHHHHHhhc---CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 141 KIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 141 k~~~l~~~l~~---~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
|...+.+++.. .+.++||||+....++.+...|...|+++..+||+++.++|++++
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i 615 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISI 615 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 55556666654 356999999999999999999999999999999999999999875
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.12 E-value=1.7e-10 Score=82.18 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=62.5
Q ss_pred cceeEEEEEcCchh-hHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 127 MNVVQEVEYVKQEA-KIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 127 ~~i~~~~~~~~~~~-k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
.++.|+++.+.+++ |...|.++++.. .+++||||++++.++.+++.|++.|+.+..+||+|++++|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 46888999888777 999999999875 46899999999999999999999999999999999999999875
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.08 E-value=1.5e-09 Score=93.03 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=41.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.++||||+....++.+...|...|+++..+||+|++++|+++.
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i 459 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 459 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHH
T ss_pred CCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999875
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.40 E-value=1.9e-10 Score=82.44 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=63.5
Q ss_pred cceeEEEEEcCc-hhhHHHHHHHhhcCC-CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhhC
Q psy7789 127 MNVVQEVEYVKQ-EAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLEN 197 (197)
Q Consensus 127 ~~i~~~~~~~~~-~~k~~~l~~~l~~~~-~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~~ 197 (197)
+++.|.++.++. +.|...|.++++..+ +++||||++++.++.+++.|+..|+.+..+||+|++++|+++++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 457788888887 889999999998754 58999999999999999999999999999999999999998753
No 85
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.88 E-value=1.1e-09 Score=84.58 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=61.2
Q ss_pred CeeEEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCce
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQ 91 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q 91 (197)
++++..++||..... ....+++|+|+||+++... ....+++++++|+||||++. ...+..++..+++..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCe
Confidence 466777777765433 1124589999999876443 23456789999999999985 3577888888888999
Q ss_pred EEEEeecCChh
Q psy7789 92 TLLFSATMPKK 102 (197)
Q Consensus 92 ~i~~SAT~~~~ 102 (197)
++++|||.+..
T Consensus 255 ~l~lSATp~~~ 265 (282)
T 1rif_A 255 KFGLSGSLRDG 265 (282)
T ss_dssp EEEECSSCCTT
T ss_pred EEEEeCCCCCc
Confidence 99999999754
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.88 E-value=3.5e-09 Score=82.54 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=62.9
Q ss_pred eeEEEEEcCchhhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 129 VVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 129 i~~~~~~~~~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.++++.+...+|...|.++++.. ++++||||++++.++.+++.|.+.|+.+..+||+|++++|++++
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 678888999999999999999864 56999999999999999999999999999999999999999875
No 87
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.86 E-value=3.4e-09 Score=78.60 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=61.6
Q ss_pred eeEEEEEcCchhhHHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhhh
Q psy7789 129 VVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 129 i~~~~~~~~~~~k~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i~ 196 (197)
+.+..+.+....|...|.++++.. ++++||||++++.++.+++.|.+.|+++..+||+|++++|++++
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVL 74 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHH
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 456677788899999999999865 46999999999999999999999999999999999999999875
No 88
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.75 E-value=5e-08 Score=83.54 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=79.7
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeE-EEEEcCchhhHHHHHHHhhc---CCCCEEEEeccccc
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQ-EVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQD 165 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~~l~~---~~~~~lIF~~s~~~ 165 (197)
.++.+||+|+..+..++.+.|..+ .+.++. ......+.+ ..++....+|...+.+.+.. .+.|+||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 368899999998888888777544 444443 332233333 35678889999999998875 35689999999999
Q ss_pred HHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 166 VDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 166 ~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
++.++..|++.|+++..+||+..+.+|..+
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii 516 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIV 516 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHH
Confidence 999999999999999999999766666543
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.45 E-value=1.7e-07 Score=70.59 Aligned_cols=73 Identities=15% Similarity=0.017 Sum_probs=52.5
Q ss_pred Cee-EEEEEcCCChHHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCc
Q psy7789 12 PLR-TCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90 (197)
Q Consensus 12 ~i~-~~~~~gg~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~ 90 (197)
|++ +..+.|+... ..+|+|+||+.+...... ..+++++||+||||.+.+..+. .++..++ ..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-AP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CC
Confidence 566 6666665432 479999999998766542 1256899999999999776544 4555554 67
Q ss_pred eEEEEeecCCh
Q psy7789 91 QTLLFSATMPK 101 (197)
Q Consensus 91 q~i~~SAT~~~ 101 (197)
+++++|||...
T Consensus 220 ~~l~LSATp~r 230 (237)
T 2fz4_A 220 FRLGLTATFER 230 (237)
T ss_dssp EEEEEEESCC-
T ss_pred EEEEEecCCCC
Confidence 89999999863
No 90
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.97 E-value=8.4e-06 Score=62.51 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=53.7
Q ss_pred cCchhhHHHHHHHhhcC---CCCEEEEecccccHHHHHHHHHhC-CCCeEeecCCCChhhhhhhh
Q psy7789 136 VKQEAKIVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLLK-GKPFFTLKSLKEDQNNQTLE 196 (197)
Q Consensus 136 ~~~~~k~~~l~~~l~~~---~~~~lIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~R~~i~ 196 (197)
.....|+..|.+++... +.++||||++...++.+...|.+. |+++..+||++++++|+++.
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHH
Confidence 45567999998888753 569999999999999999999985 99999999999999998875
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.75 E-value=0.0014 Score=55.16 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=32.4
Q ss_pred HhcCCcEEEeCchHHHHHHhcCCccC-CCccEEEeehhhhhhc
Q psy7789 31 IKKGCHMMVATPGRLMDMLDKKMVSL-DVCRYLCLDEADRMVD 72 (197)
Q Consensus 31 l~~~~~Ili~TP~~l~~~l~~~~~~l-~~l~~vViDEad~l~~ 72 (197)
...++||||+|+..|++...+..+.+ .....+||||||.+.+
T Consensus 145 ~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 145 SLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 34569999999999998754443333 4677999999999876
No 92
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.48 E-value=0.0044 Score=51.90 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCC
Q psy7789 143 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLK 187 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 187 (197)
..+.++++..++.+|||++|....+.+++.+.. .. ...+|..
T Consensus 374 ~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~ 415 (540)
T 2vl7_A 374 ILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK 415 (540)
T ss_dssp HHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT
T ss_pred HHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC
Confidence 445555566667899999999999999998865 23 3445543
No 93
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=93.54 E-value=0.15 Score=32.78 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=33.3
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
.++++||.+-.++...+..|++.|+++..+.||+..=
T Consensus 56 ~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W 92 (108)
T 3gk5_A 56 KKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSW 92 (108)
T ss_dssp SCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHH
Confidence 5799999999999999999999999999999987653
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.00 E-value=0.15 Score=43.46 Aligned_cols=100 Identities=10% Similarity=0.086 Sum_probs=54.8
Q ss_pred ceEEEEeecCChhHHHHHHHhcCCCeEEEeCCCCccCcceeEEEEE--cC------chh----hHHHHHHHhhcCCCCEE
Q psy7789 90 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEY--VK------QEA----KIVYLLECLQKTEPPVL 157 (197)
Q Consensus 90 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~--~~------~~~----k~~~l~~~l~~~~~~~l 157 (197)
..+|++|||+++ ...+...+.-+...+.....- ..++.. .++. .+ ++. -...+.++++..++.++
T Consensus 376 ~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~spf-~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~l 452 (620)
T 4a15_A 376 SKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEIF-PPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTI 452 (620)
T ss_dssp SEEEEEESSCCS-HHHHHHHHCCCCCEEECCCCS-CGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred CeEEEEccCCCc-HHHHHHHhCCCceeeecCCCC-CHHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 457899999986 555555554443333332211 112211 1111 11 111 12344555555678899
Q ss_pred EEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 158 IFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 158 IF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
||++|....+.+++.++..+ .. ...+++..+|.++
T Consensus 453 vlF~Sy~~l~~v~~~l~~~~--~~-~~q~~~~~~~~~l 487 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSFEH--MK-EYRGIDQKELYSM 487 (620)
T ss_dssp EEESCHHHHHHHTSSCCSCC--EE-CCTTCCSHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHhcc--hh-ccCCCChhHHHHH
Confidence 99999999999998887222 22 4445555566554
No 95
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=92.78 E-value=0.1 Score=32.56 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|+..|+++..+.||+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 679999999989999999999999998889999864
No 96
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=92.07 E-value=0.11 Score=33.02 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=32.4
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|+..|+++..+.||+..
T Consensus 57 ~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (103)
T 3eme_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHH
Confidence 479999999999999999999999999999998754
No 97
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=91.94 E-value=0.11 Score=32.80 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=32.5
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|+..|+++..+.||+..
T Consensus 57 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 57 ETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 579999999999999999999999999999998764
No 98
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=91.50 E-value=0.26 Score=32.56 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCEEEEe-cccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 154 PPVLIFA-EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 154 ~~~lIF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
.++++|| .+-.++...+..|+..|+++..+.||+..=.+
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W~~ 129 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAYRN 129 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHHHH
Confidence 6799999 58888999999999999999999999876443
No 99
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=91.49 E-value=0.14 Score=32.78 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=31.8
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|++.|+++..+.||+..
T Consensus 57 ~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~~ 92 (103)
T 3iwh_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHHH
Confidence 479999999999999999999999998888888753
No 100
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=91.13 E-value=2.1 Score=35.77 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=54.2
Q ss_pred hccCC-ceEEEEeecCChhHHHHHHHhcCC-CeEE---EeCCCCccCcceeEEEEEc----Cc------hh----hHHHH
Q psy7789 85 FFRGQ-RQTLLFSATMPKKIQNFARSALVK-PITI---NVGRAGAASMNVVQEVEYV----KQ------EA----KIVYL 145 (197)
Q Consensus 85 ~~~~~-~q~i~~SAT~~~~~~~~~~~~~~~-~~~i---~~~~~~~~~~~i~~~~~~~----~~------~~----k~~~l 145 (197)
.+... ..+|++|||+++ ...+...+.-+ +... ...-. +.- ..+..+++ +. +. -...+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~-spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i 385 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQ-KRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYL 385 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTT-SCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecC-CcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHH
Confidence 34445 789999999987 55555555544 2221 00001 111 12222222 11 11 12344
Q ss_pred HHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 146 LECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 146 ~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
.++++..++.++||++|....+.+++ ..+.++..=..+++.+++
T Consensus 386 ~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~~~~ 429 (551)
T 3crv_A 386 LKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSVEDL 429 (551)
T ss_dssp HHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCHHHH
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCHHHH
Confidence 44555567789999999999999987 335444433335554443
No 101
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=91.06 E-value=0.65 Score=28.09 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=30.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~ 190 (197)
..++++||.+-.++...+..|++.|++ +..+ |++..-
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~w 78 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDI 78 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTTC
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHHH
Confidence 457999999988999999999999985 6666 887653
No 102
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=90.75 E-value=0.031 Score=46.81 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=29.3
Q ss_pred cCCcEEEeCchHHHHHHhcCCc-------cCCCccEEEeehhhhhh
Q psy7789 33 KGCHMMVATPGRLMDMLDKKMV-------SLDVCRYLCLDEADRMV 71 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~~~~-------~l~~l~~vViDEad~l~ 71 (197)
.++||+|+|+..|++....+.+ .+.....+||||||.+.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 3589999999999975543222 23567899999999983
No 103
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=90.08 E-value=0.26 Score=31.50 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=32.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~ 190 (197)
..++++||.+-.++...+..|+..|++ +..+.||+..=
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 90 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAW 90 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHH
Confidence 357999999988899999999999994 88899987653
No 104
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=90.05 E-value=0.37 Score=31.69 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=31.6
Q ss_pred CCEEEEeccccc--HHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQD--VDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~--~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||.+-.+ +...+..|+..|+++..+.||+..
T Consensus 72 ~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 72 KTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp SEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 479999998877 899999999999999999998764
No 105
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=89.79 E-value=0.51 Score=32.04 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=31.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 188 (197)
..++++||.+-.++...+..|+..|+ ++..+.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 35799999998889999999999999 5999999984
No 106
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=89.61 E-value=1.2 Score=28.46 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=32.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
...++++||.+-.++...+..|+..|++...+.||+..=
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~W 93 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYDF 93 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGGT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHHH
Confidence 345899999999999999999999999667888987653
No 107
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=89.28 E-value=0.36 Score=32.44 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=33.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~ 190 (197)
..++++||.+-.++...+..|+..|+ ++..+.||+..=
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W 120 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKW 120 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHHH
Confidence 35899999999999999999999999 599999997653
No 108
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=88.79 E-value=0.68 Score=40.34 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=27.2
Q ss_pred CcEEEeCchHHH-HHHhcC------CccCCCccEEEeehhhhhh
Q psy7789 35 CHMMVATPGRLM-DMLDKK------MVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 35 ~~Ili~TP~~l~-~~l~~~------~~~l~~l~~vViDEad~l~ 71 (197)
+||..+|..-+- ++++.+ ..-.+.+.+.||||+|.++
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 899999987765 444422 1224778899999999886
No 109
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=88.64 E-value=0.34 Score=30.96 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=32.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|+..|+ ++..+.||+..
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 35899999998899999999999999 48889998764
No 110
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=88.38 E-value=0.36 Score=32.03 Aligned_cols=37 Identities=8% Similarity=-0.052 Sum_probs=32.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|+..|++ +..+.||+..
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 358999999989999999999999994 8899999865
No 111
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=88.26 E-value=0.33 Score=32.94 Aligned_cols=37 Identities=8% Similarity=-0.093 Sum_probs=32.1
Q ss_pred CCEEEEeccc--ccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 154 PPVLIFAEKK--QDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 154 ~~~lIF~~s~--~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
.++++||.+- .++...+..|+..|+++..+.||+..=
T Consensus 73 ~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~W 111 (144)
T 3nhv_A 73 KVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYW 111 (144)
T ss_dssp SEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHHH
T ss_pred CeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHHH
Confidence 4799999987 689999999999999999999987643
No 112
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.96 E-value=0.59 Score=39.67 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=30.8
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
.++++|||||+.+ + .+.+..+++.++...|++++.-.
T Consensus 262 ~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred CCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcch
Confidence 6789999999955 3 56778889999999999998765
No 113
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=86.57 E-value=0.4 Score=32.07 Aligned_cols=37 Identities=3% Similarity=-0.088 Sum_probs=32.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|+..|++ +..+.||+..
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 457999999988999999999999995 9999998754
No 114
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=86.13 E-value=0.54 Score=31.46 Aligned_cols=36 Identities=6% Similarity=0.021 Sum_probs=31.7
Q ss_pred CCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|++.|+ ++..+.||+..
T Consensus 92 ~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 92 KELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4799999999999999999999999 48889998764
No 115
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=85.81 E-value=0.74 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCC
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKE 188 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~ 188 (197)
..++++||.+=.++...+..|++.|+. +..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 357999999988999999999999994 888999984
No 116
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=85.28 E-value=0.59 Score=31.56 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|+..|+. +..+.||+..
T Consensus 57 ~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 57 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 47999999988999999999999994 8888888754
No 117
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=83.83 E-value=2.7 Score=31.54 Aligned_cols=38 Identities=5% Similarity=-0.015 Sum_probs=33.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~ 190 (197)
.+++++||.+-.++...+..|+..|+ ++..+.|++..=
T Consensus 230 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 230 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 35799999999999999999999999 599999998754
No 118
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=83.75 E-value=1.5 Score=34.23 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=42.2
Q ss_pred CchhhHHHHHHHhh---cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 137 KQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 137 ~~~~k~~~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
....|+..|.+++. +.+.+++||++..+.-+-+-.++...|++...+.|.....
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~ 162 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS 162 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh
Confidence 34567766666654 4556899999999999999999999999999999885443
No 119
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=83.56 E-value=0.89 Score=31.20 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCCEEEEecccc---------cHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQ---------DVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~---------~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
..++++||.+-. .+..++..|...|+++..+.||+..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~ 138 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 138 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHH
Confidence 458999998873 5888899999999999999998754
No 120
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=81.38 E-value=2 Score=32.34 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=36.9
Q ss_pred hhhHHHHHHHhh-cCCCCEEEEeccccc-HHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 139 EAKIVYLLECLQ-KTEPPVLIFAEKKQD-VDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 139 ~~k~~~l~~~l~-~~~~~~lIF~~s~~~-~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.+.+...+..+. ....+++|||.+-.. +..++..|+..|+ ++..+.||+..
T Consensus 71 ~~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 71 PETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp HHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 344544444442 234579999988666 8899999999999 69999998754
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.14 E-value=5.3 Score=32.27 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=45.7
Q ss_pred eeEEEEEcCCC--hHHhHHHHh-----c--CCcEEEeCchHHHHHH----hcCCc-----cCC-CccEEEeehhhhhhcC
Q psy7789 13 LRTCLAIGGVP--MNQSLDVIK-----K--GCHMMVATPGRLMDML----DKKMV-----SLD-VCRYLCLDEADRMVDM 73 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~~~l~-----~--~~~Ili~TP~~l~~~l----~~~~~-----~l~-~l~~vViDEad~l~~~ 73 (197)
.+..+++|+.. ...-...+. . +..++..+...+..-+ ..... .+. ..+.+++||+|.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 56778888643 333333332 1 5667766665554322 21111 124 6789999999999763
Q ss_pred -CCHHHHHHHHhhcc-CCceEEEEee
Q psy7789 74 -GFEEDVRTIFSFFR-GQRQTLLFSA 97 (197)
Q Consensus 74 -~~~~~i~~i~~~~~-~~~q~i~~SA 97 (197)
.....+..++..+. ...++++.|.
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 23344444444433 3455555443
No 122
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=79.84 E-value=1.8 Score=29.39 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCCEEE-Ee-cccccHHHHH----HHHHhCCC---CeEeecCCCCh
Q psy7789 142 IVYLLECLQKTEPPVLI-FA-EKKQDVDAIH----EYLLLKGK---PFFTLKSLKED 189 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lI-F~-~s~~~~~~l~----~~L~~~~~---~~~~~h~~~~~ 189 (197)
+..+...+.....+.+| || .+-.++...+ ..|+..|+ ++..+.||+..
T Consensus 56 ~~~l~~~l~~~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 56 YEKLAKTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEA 112 (152)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHH
T ss_pred HHHHHHHhcccCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 44454445434445555 59 4655544444 77888896 68889998764
No 123
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=79.00 E-value=1.9 Score=28.52 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCEEEEecccccH---------HHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDV---------DAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~---------~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||.+-.++ ..++..|...|+++..+.||+..
T Consensus 84 ~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~~ 128 (142)
T 2ouc_A 84 KEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 128 (142)
T ss_dssp SCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHHH
Confidence 5799999886653 56788899999999999998754
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.37 E-value=0.65 Score=31.64 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccC-CceEEEEeecCC
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-QRQTLLFSATMP 100 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-~~q~i~~SAT~~ 100 (197)
+.+.+++++||++.+.... ...+..+++.... ...++++++..+
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 3467899999999864432 4555555555433 344355555543
No 125
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=78.34 E-value=2.9 Score=31.17 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=36.3
Q ss_pred hhhHHHHHHHhh-cCCCCEEEEecccc-cHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 139 EAKIVYLLECLQ-KTEPPVLIFAEKKQ-DVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 139 ~~k~~~l~~~l~-~~~~~~lIF~~s~~-~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.+.+...+..+. ....+++|||.+-. ++...+..|+..|+ ++..+.||+..
T Consensus 66 ~~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~ 119 (271)
T 1e0c_A 66 REQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTA 119 (271)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 344444444432 23457999998765 88889999999999 58889988654
No 126
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=77.37 E-value=1.6 Score=32.97 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=34.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQN 191 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~ 191 (197)
..+++++||.+-.+|...+..|+..|+ ++..+.||+..-.
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~ 220 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYL 220 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHHH
Confidence 346899999999999999999999999 6999999876543
No 127
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=76.36 E-value=4.3 Score=32.12 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=36.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHh---CCCCeEeecCCCChhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLL---KGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~R 192 (197)
.++++||-++|+.-+..+++.+++ .|+++..++|+.+.++|
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~ 106 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEK 106 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhH
Confidence 456899999999999999999988 58899999999998665
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=75.01 E-value=5.5 Score=27.89 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=24.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..-..+++||+|.+... ....+..++...+....+++.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 56679999999998542 2344555555555555555544
No 129
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=74.98 E-value=2.7 Score=31.35 Aligned_cols=37 Identities=3% Similarity=-0.085 Sum_probs=32.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|+..|+ ++..+.|++..
T Consensus 223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 260 (271)
T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGE 260 (271)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 35799999998899999999999999 58889898754
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.62 E-value=2 Score=33.23 Aligned_cols=42 Identities=10% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecC
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
.+.+.+++||+|.+ +......+..++...++...+++.|...
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 46779999999994 4334556666666666666666665543
No 131
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=74.09 E-value=7.8 Score=27.52 Aligned_cols=40 Identities=8% Similarity=-0.059 Sum_probs=33.1
Q ss_pred CCEEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R~ 193 (197)
.++||.++++.-++.+++.+++. +.++..++|+.+..++.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 127 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 127 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH
Confidence 48999999999999988887664 78899999998866543
No 132
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=73.86 E-value=4.1 Score=30.88 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
..++++||.+=.++...+..|+..|++ +..+.|++..
T Consensus 240 ~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 277 (296)
T 1rhs_A 240 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFE 277 (296)
T ss_dssp TSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 457999999988999999999999995 8888888764
No 133
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=73.32 E-value=10 Score=26.66 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=33.9
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
|+++..++|+.+..++.+.+ . +..+|+|+| +.+. ..+++..+++||.
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQHVIN 128 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCSEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCCEEEE
Confidence 78899999998866655444 2 458999999 4444 3456778888875
No 134
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=73.22 E-value=1.2 Score=37.82 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=26.0
Q ss_pred hcCCcEEEeCchHHHHHHhcCC----cc-CCCccEEEeehhhhhhc
Q psy7789 32 KKGCHMMVATPGRLMDMLDKKM----VS-LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~~~----~~-l~~l~~vViDEad~l~~ 72 (197)
...+||||+.=.-|++...... +. .-.=..+||||||.|.+
T Consensus 173 ~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 173 LPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 3459999999766554432111 11 12335899999999965
No 135
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=73.07 E-value=1.9 Score=31.42 Aligned_cols=37 Identities=8% Similarity=-0.065 Sum_probs=32.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|+..|.++..+.|++..
T Consensus 184 ~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 184 GQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp TCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 3579999999999999999999999778888898765
No 136
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=72.64 E-value=3.9 Score=30.68 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=31.5
Q ss_pred CCCEEEEecccccHHHHHHHHH-hCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLL-LKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~-~~~~-~~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|+ ..|+ ++..+.|++..
T Consensus 233 ~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~ 271 (285)
T 1uar_A 233 DKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTE 271 (285)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHH
Confidence 3579999999888888999999 8899 68899998764
No 137
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=72.43 E-value=6.3 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=30.4
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQ-DVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~-~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..+++|||.+-. .+...+..|+..|+ ++..+.||+..
T Consensus 111 ~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~ 149 (318)
T 3hzu_A 111 DDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDL 149 (318)
T ss_dssp TCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHHH
Confidence 457999998766 78889999999999 58889887643
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=71.86 E-value=8.5 Score=27.55 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=37.2
Q ss_pred CCccEEEeehhhhhhcCC--CHHHHHHHHhhccCCceEEEEeecCChhHHHHH
Q psy7789 57 DVCRYLCLDEADRMVDMG--FEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFA 107 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~--~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 107 (197)
...++||+||+-..+..+ -.+.+..++..-|...-+|+.+--.++++.+.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 678999999998765544 345666777777777777777777777776655
No 139
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=71.83 E-value=4.7 Score=33.89 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
...+++||||++.+ -...+..+++.++...+++++.-.
T Consensus 278 ~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 278 APYDLLIVDEVSMM----GDALMLSLLAAVPPGARVLLVGDT 315 (574)
T ss_dssp CSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEEEEEECT
T ss_pred ccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEEEEEecc
Confidence 36789999999987 345777888888878888887544
No 140
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=71.71 E-value=2.2 Score=29.89 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.9
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
+.-.++++||.+.-++......+..+++.+....|++++|-.
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 345799999999988876667777777777667788777643
No 141
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=71.49 E-value=4.5 Score=30.36 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=34.6
Q ss_pred hHHHHHHHhh-cCCCCEEEEecccc-cHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 141 KIVYLLECLQ-KTEPPVLIFAEKKQ-DVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 141 k~~~l~~~l~-~~~~~~lIF~~s~~-~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.+...+..+. ....++++||.+-. .+...+..|+..|+ ++..+.||+..
T Consensus 66 ~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~ 117 (285)
T 1uar_A 66 EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQK 117 (285)
T ss_dssp HHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 3444444332 23457999998865 67888889999999 58889998754
No 142
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=70.84 E-value=7 Score=29.15 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=34.4
Q ss_pred hhHHHHHHHhh-cCCCCEEEEeccc-ccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 140 AKIVYLLECLQ-KTEPPVLIFAEKK-QDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 140 ~k~~~l~~~l~-~~~~~~lIF~~s~-~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
+.+...+..+. ....++++||.+- ..+...+..|+..|+ ++..+.||+..
T Consensus 63 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~ 115 (277)
T 3aay_A 63 QQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKK 115 (277)
T ss_dssp HHHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHH
Confidence 34444444332 2335799999874 357788889999999 68899988654
No 143
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=70.56 E-value=6.2 Score=28.41 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=34.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R~~ 194 (197)
+.++||.++++.-++.+++.+++. +.++..++|+.+..++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 138 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT 138 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH
Confidence 358999999999999999888764 678899999988766543
No 144
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=69.97 E-value=8.6 Score=27.83 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=28.4
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhCCCC-eEeecCC
Q psy7789 153 EPPVLIFAEKKQ-DVDAIHEYLLLKGKP-FFTLKSL 186 (197)
Q Consensus 153 ~~~~lIF~~s~~-~~~~l~~~L~~~~~~-~~~~h~~ 186 (197)
..++++||.+-. .+..++..|+ .|++ +..+.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 468999998877 8889999999 9994 8888887
No 145
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=69.90 E-value=9 Score=25.96 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=34.3
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeeh
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDE 66 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDE 66 (197)
|+++..++|+.+..++...+ . +..+|+|+| +.+. ..+++..+++||.-+
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAA-RGIDIENISLVINYD 111 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-TTCCCSCCSEEEESS
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-cCCchhcCCEEEEeC
Confidence 78899999998766555443 3 358999999 3333 445677888888543
No 146
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=68.88 E-value=18 Score=22.87 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCEEEEe------cccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 144 YLLECLQKTEPPVLIFA------EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~------~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+.++++. .+++||. ++.-.|....++|.+.|++...+.=...++.|+.+
T Consensus 8 ~v~~~i~~--~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 8 RLKKLTHA--APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp HHHHHHTS--SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHH
T ss_pred HHHHHHhc--CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHH
Confidence 33444443 4799999 57788999999999999876665444445555443
No 147
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=68.47 E-value=7.3 Score=32.38 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCCCeEeecC-CCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKS-LKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~-~~~~ 189 (197)
..++++||.+-.++...+..|+..|+++..+.| |+..
T Consensus 322 ~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~~ 359 (539)
T 1yt8_A 322 GARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEAD 359 (539)
T ss_dssp TCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGG
T ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChHH
Confidence 467999999988899999999999999999999 8754
No 148
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.44 E-value=4.7 Score=30.79 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=44.6
Q ss_pred eeEEEEEcCCC--hHHhHHHHh-----cCCcEEEeCchHHHHHHh----cCCc-----cCCCccEEEeehhhhhhcC-CC
Q psy7789 13 LRTCLAIGGVP--MNQSLDVIK-----KGCHMMVATPGRLMDMLD----KKMV-----SLDVCRYLCLDEADRMVDM-GF 75 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~~~l~-----~~~~Ili~TP~~l~~~l~----~~~~-----~l~~l~~vViDEad~l~~~-~~ 75 (197)
-+..+++|... ...-.+.+. .+..++..+...+...+. .... ...+.+.+++||+|.+... ..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~ 116 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 116 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence 45667888643 333333332 256777776665543221 1110 1234679999999998652 12
Q ss_pred HHHHHHHHhhcc-CCceEEEEeecCC
Q psy7789 76 EEDVRTIFSFFR-GQRQTLLFSATMP 100 (197)
Q Consensus 76 ~~~i~~i~~~~~-~~~q~i~~SAT~~ 100 (197)
...+..++.... ...+++ ++++-+
T Consensus 117 ~~~l~~~l~~~~~~~~~ii-i~~~~~ 141 (324)
T 1l8q_A 117 QIEFFHIFNTLYLLEKQII-LASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESSC
T ss_pred HHHHHHHHHHHHHCCCeEE-EEecCC
Confidence 334444444333 344544 445543
No 149
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=68.21 E-value=11 Score=26.95 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=34.2
Q ss_pred CeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 12 PLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
|+.+..++|+.+...+.+.+. +..+|+|+| +.+. ..+++..+++||.
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQVDLVVH 105 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCCBSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCccCcEEEE
Confidence 788999999988766664443 358999999 3333 4556788888873
No 150
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=68.15 E-value=15 Score=22.58 Aligned_cols=42 Identities=5% Similarity=-0.023 Sum_probs=28.6
Q ss_pred CCEEEEe-cccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 154 PPVLIFA-EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 154 ~~~lIF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.++.||. ++.-.|....++|.+.|++...+.=+..++.|+.+
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~ 46 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFV 46 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHH
Confidence 3567776 55677888888888888776666655555555543
No 151
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=67.11 E-value=9 Score=31.24 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
++++||.|+++.-+...++.+++. ++++..++|+.+..++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 568999999998888877777654 8999999999977654
No 152
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=66.64 E-value=11 Score=31.17 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=33.3
Q ss_pred hcCCCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 150 QKTEPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 150 ~~~~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.....++++||.+-..+...+..|+..|+ ++..+.||+..
T Consensus 60 ~~~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~~~ 100 (539)
T 1yt8_A 60 PRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSG 100 (539)
T ss_dssp CCTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCHHH
Confidence 33456899999988899999999999999 58889888654
No 153
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=66.29 E-value=4.6 Score=28.88 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=22.5
Q ss_pred ccEEEeehhhhhhcCC--CHHHHHHHHhhcc----CCceEEEEeec
Q psy7789 59 CRYLCLDEADRMVDMG--FEEDVRTIFSFFR----GQRQTLLFSAT 98 (197)
Q Consensus 59 l~~vViDEad~l~~~~--~~~~i~~i~~~~~----~~~q~i~~SAT 98 (197)
-..+||||||.++... ..+.. .++..+. ...++++++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999995321 11111 2333332 34478888776
No 154
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=66.28 E-value=11 Score=29.10 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=22.2
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
...-+.+||||+|.+... ....+.+.++.-++..-+++.+
T Consensus 106 ~~~~kvviIdead~l~~~-a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDA-AANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp TSSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCCcEEEEECchhhcCHH-HHHHHHHHhcCCCCCeEEEEEe
Confidence 356889999999998532 2233333333323333444443
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=66.17 E-value=10 Score=28.58 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=24.4
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..-+.+++||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 56789999999998432 2344555555545555555543
No 156
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=66.17 E-value=7 Score=29.15 Aligned_cols=37 Identities=5% Similarity=-0.033 Sum_probs=30.9
Q ss_pred CCCEEEEecccccHHHHHHHHHh-CCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLL-KGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~-~~~-~~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|++ .|+ ++..+.|++..
T Consensus 226 ~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~ 264 (277)
T 3aay_A 226 SKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTE 264 (277)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHH
Confidence 45899999998888888889986 898 48899998754
No 157
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=66.09 E-value=3 Score=31.82 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=26.4
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
...+.+++||+|.+........+..++...+.+.++++.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 47789999999998622234455555555555666666443
No 158
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=65.84 E-value=11 Score=29.87 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhC-CC---CeEeecCCCChhhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLK-GK---PFFTLKSLKEDQNNQT 194 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~~R~~ 194 (197)
..+++||.|+++.-+...++.+++. +. ++..+||+.+..++..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 97 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSK 97 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhh
Confidence 4578999999999999998888776 55 8999999998877654
No 159
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=65.49 E-value=4.3 Score=33.67 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=32.8
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|++.|+++..+.|++..
T Consensus 525 ~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~~ 560 (565)
T 3ntd_A 525 KEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYRT 560 (565)
T ss_dssp SEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHHH
Confidence 479999999999999999999999999999998864
No 160
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=65.48 E-value=5.6 Score=33.53 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
+.+++..+.. ++++||.++++.-++...+.|++.|+++..++|+++.+++..+
T Consensus 74 l~~~lpal~~-~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~ 126 (591)
T 2v1x_A 74 LCYQLPALCS-DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWV 126 (591)
T ss_dssp HHHHHHHHTS-SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHH
Confidence 3444444443 4689999999999999999999999999999999998877644
No 161
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=65.44 E-value=9.4 Score=27.68 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=33.3
Q ss_pred CCCEEEEecccccHHHHHHHHHh----CCCCeEeecCCCChhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLL----KGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~R~ 193 (197)
++++||.++|+.-+..+++.+++ .++++..++|+.+..++.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 146 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 146 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Confidence 45799999999988888777654 488999999998877654
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=64.42 E-value=6.2 Score=28.19 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCC-CHHHHHHHHhhccC-CceEEEEeecC
Q psy7789 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG-FEEDVRTIFSFFRG-QRQTLLFSATM 99 (197)
Q Consensus 34 ~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~-~~~~i~~i~~~~~~-~~q~i~~SAT~ 99 (197)
+..++..+...+...+....-.+.....+++||+|.+.... ....+..++..... ....++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 80 ERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp TCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred CCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 34555554443332221111123456799999999986532 13344444444332 33324444443
No 163
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=63.98 E-value=2.9 Score=27.01 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=30.2
Q ss_pred CEEEEecccccHHHHHHHHHhC------CC-CeEeecCCCChh
Q psy7789 155 PVLIFAEKKQDVDAIHEYLLLK------GK-PFFTLKSLKEDQ 190 (197)
Q Consensus 155 ~~lIF~~s~~~~~~l~~~L~~~------~~-~~~~~h~~~~~~ 190 (197)
++++||.+-.++...+..|+.. |+ ++..+.||+..=
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W 116 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAW 116 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHH
Confidence 7999999988899999999888 34 788899987653
No 164
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=63.95 E-value=6.3 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.117 Sum_probs=28.2
Q ss_pred CCccEEEeehhhhhhcC---CCHHHHHHHHhhccC-CceEEEEeecC
Q psy7789 57 DVCRYLCLDEADRMVDM---GFEEDVRTIFSFFRG-QRQTLLFSATM 99 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~---~~~~~i~~i~~~~~~-~~q~i~~SAT~ 99 (197)
..-.++|+||||.++.. .+.+.+..+++..++ +.-+++.|-.+
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~ 307 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNV 307 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCH
Confidence 44679999999999863 245566777666655 33455555544
No 165
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=63.91 E-value=9.5 Score=28.80 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=35.4
Q ss_pred chhhHHHHHHHhh-cCCCCEEEEecc--c-ccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 138 QEAKIVYLLECLQ-KTEPPVLIFAEK--K-QDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 138 ~~~k~~~l~~~l~-~~~~~~lIF~~s--~-~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..+.+...+..+. ....+++|||.+ - ..+..++..|+..|+ ++..+.||+..
T Consensus 76 ~~~~~~~~l~~lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~ 132 (296)
T 1rhs_A 76 SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRN 132 (296)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHH
Confidence 3344444444332 223579999987 3 347788889999998 58899998754
No 166
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=63.77 E-value=21 Score=25.89 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=19.9
Q ss_pred EEEeCchHHHHHHhcCCccCCCccEEEeehhhhh
Q psy7789 37 MMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 37 Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l 70 (197)
+-+.+++.++..+.... .-...++|+|||+..+
T Consensus 69 ~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp EEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred cccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 34455555555554321 1245789999999875
No 167
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=63.65 E-value=13 Score=26.99 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=38.0
Q ss_pred hhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCC
Q psy7789 139 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKE 188 (197)
Q Consensus 139 ~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~ 188 (197)
..|......++...+.+++|+|+++.-++.+++.+.+.+.+ +..++|+..
T Consensus 119 ~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 119 SGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp TTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 44555444455555678999999999999999999887877 888887754
No 168
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=63.40 E-value=25 Score=22.06 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCCEEEEec------ccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 144 YLLECLQKTEPPVLIFAE------KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~~------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
.+.++++. .+++||.. ..-.|....++|.+.|++...+.=...++.|+.
T Consensus 10 ~v~~~i~~--~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~ 64 (109)
T 3ipz_A 10 TLEKLVNS--EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQG 64 (109)
T ss_dssp HHHHHHTS--SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHH
T ss_pred HHHHHHcc--CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHH
Confidence 33344443 36999987 488999999999999987665543334444443
No 169
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=63.35 E-value=14 Score=33.79 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=36.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHh---CCCCeEeecCCCChhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLL---KGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~R 192 (197)
.++++||-++|+.-|..+++.+++ .++++..+||+++..+|
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er 163 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEK 163 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHH
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHH
Confidence 456899999999999999999998 57799999999998665
No 170
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=63.33 E-value=10 Score=29.37 Aligned_cols=41 Identities=2% Similarity=0.097 Sum_probs=24.3
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhc---cCCceEEEEeecCC
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFF---RGQRQTLLFSATMP 100 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~---~~~~q~i~~SAT~~ 100 (197)
+..-.+++||+|.+.+ ...+..+++.. ....-+|+.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 3456889999999983 23333343321 12335667788864
No 171
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=63.25 E-value=13 Score=25.11 Aligned_cols=49 Identities=6% Similarity=0.228 Sum_probs=34.0
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeeh
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDE 66 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDE 66 (197)
|+.+..++|+.+..++.+.+ . +..+|+|+|. .+. ..+++..+++||.-+
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQVSLVINYD 106 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT-TTCCCCSCSEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh-cCCCcccCCEEEEeC
Confidence 67899999998866555443 3 3589999993 333 345677888887643
No 172
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=62.94 E-value=5.8 Score=28.11 Aligned_cols=39 Identities=10% Similarity=-0.006 Sum_probs=20.8
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..-.++|+||+|.+... ....+...+...+....+++.|
T Consensus 125 ~~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 34568999999997321 2233333343333344444443
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=62.78 E-value=4.1 Score=27.75 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=11.9
Q ss_pred CccEEEeehhhhhh
Q psy7789 58 VCRYLCLDEADRMV 71 (197)
Q Consensus 58 ~l~~vViDEad~l~ 71 (197)
.-..+++||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 115 GQVVMFIDEIHTVV 128 (187)
T ss_dssp TSEEEEETTGGGGS
T ss_pred CceEEEEeCHHHhc
Confidence 34699999999996
No 174
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=62.77 E-value=5.9 Score=33.13 Aligned_cols=37 Identities=11% Similarity=-0.062 Sum_probs=33.2
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
+++++||.+-.++...+..|++.|+++..+.|++..=
T Consensus 542 ~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~~w 578 (588)
T 3ics_A 542 KDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKLY 578 (588)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHHHH
Confidence 5799999999999999999999999999999988653
No 175
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=62.38 E-value=5.1 Score=30.71 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=34.1
Q ss_pred CCcEEEeCchH-------HHHHHh---cCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecC
Q psy7789 34 GCHMMVATPGR-------LMDMLD---KKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 34 ~~~Ili~TP~~-------l~~~l~---~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
.++++.-.|.. +..++. ... .....+.+||||||.+... ..+.+...+..-|+...+++. ++-
T Consensus 49 ~~d~~~l~~~~~~~~id~ir~li~~~~~~p-~~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~-t~~ 121 (305)
T 2gno_A 49 ASDVLEIDPEGENIGIDDIRTIKDFLNYSP-ELYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLN-TRR 121 (305)
T ss_dssp TTTEEEECCSSSCBCHHHHHHHHHHHTSCC-SSSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEE-ESC
T ss_pred CCCEEEEcCCcCCCCHHHHHHHHHHHhhcc-ccCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEE-ECC
Confidence 47888776641 233332 222 2467899999999998532 223344444443334444444 443
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=61.94 E-value=19 Score=26.53 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCccEEEeehhhhhhcC-----CC-HHHHHHHHhhcc----CCceEEEEeecCChh
Q psy7789 57 DVCRYLCLDEADRMVDM-----GF-EEDVRTIFSFFR----GQRQTLLFSATMPKK 102 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~-----~~-~~~i~~i~~~~~----~~~q~i~~SAT~~~~ 102 (197)
..-..+++||+|.++.. .. ...+..+...+. ...+++++.+|-.++
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 44679999999998532 12 222233333332 344666777776544
No 177
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=61.76 E-value=4.4 Score=30.93 Aligned_cols=37 Identities=11% Similarity=-0.020 Sum_probs=31.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..++++||.+=.++...+..|...|+ ++..+.|++..
T Consensus 254 ~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 254 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp TSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred CCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 35799999998888888999999998 68888888764
No 178
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=61.42 E-value=12 Score=30.26 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=27.5
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
+...+++||||++.+ -...+..+++.++...+++++.-.
T Consensus 126 ~~~~~~iiiDE~~~~----~~~~~~~l~~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 126 LAKCRVLICDEVSMY----DRKLFKILLSTIPPWCTIIGIGDN 164 (459)
T ss_dssp CSSCSEEEESCGGGC----CHHHHHHHHHHSCTTCEEEEEECT
T ss_pred ccCCCEEEEECchhC----CHHHHHHHHHhccCCCEEEEECCH
Confidence 457889999999976 245666677777666677666533
No 179
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=61.37 E-value=8.3 Score=26.99 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=21.6
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
..++|++||++.+.. +..+.+..+. +.+..+++..-+
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~---~~~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLL---DRGIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHH---HTTCEEEEEEES
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHH---HCCCCEEEEeec
Confidence 578999999998632 2344444333 335555554443
No 180
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=60.99 E-value=19 Score=27.75 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=33.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R~ 193 (197)
+.++||.|+++.-++.+++.+++. +.++..++|+.+..++.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 121 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH
Confidence 348999999999999988887664 78899999998876654
No 181
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=60.84 E-value=3.6 Score=28.40 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=35.1
Q ss_pred cCCcEEEeCchHHHHHHhc----CC-----ccCCCccEEEeehhhhhh-cCCCHHHHHHHHhhcc-CCceEEEEeecCC
Q psy7789 33 KGCHMMVATPGRLMDMLDK----KM-----VSLDVCRYLCLDEADRMV-DMGFEEDVRTIFSFFR-GQRQTLLFSATMP 100 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~----~~-----~~l~~l~~vViDEad~l~-~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~ 100 (197)
.+..++..+...+...+.. .. -.+.+.+++|+||++... +......+..++.... ....+++.|...+
T Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 66 KGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp SCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 3556665555555543321 11 124567899999998542 2223445555555543 3444444444433
No 182
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=60.62 E-value=19 Score=25.70 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=31.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
+.++||.++++.-+..+++.+++. +.++..++|+.+..+.
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 140 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 140 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHH
Confidence 457999999999999998888764 4789999998876554
No 183
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=60.27 E-value=8 Score=30.54 Aligned_cols=37 Identities=3% Similarity=-0.172 Sum_probs=31.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.+++++||.+=.++...+..|+..|+ ++..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 45799999998898889999999999 48888888764
No 184
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=60.27 E-value=4.7 Score=26.49 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=27.4
Q ss_pred cccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 163 KQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
++.|..+..+|...|+....+.=+++++.|++.
T Consensus 16 kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM 48 (121)
T 1u6t_A 16 KKKQQDVLGFLEANKIGFEEKDIAANEENRKWM 48 (121)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCceEEEECCCCHHHHHHH
Confidence 456689999999999998888888888888764
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.20 E-value=13 Score=28.49 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
...+.+|+||+|.+... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999988542 3445666666666666666553
No 186
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=60.03 E-value=18 Score=24.72 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=34.1
Q ss_pred CCeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
.|+++..++|+.+..++...+ . +..+|+|+|. .+ ...+++..+++||.
T Consensus 57 ~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 57 DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVTIVVN 108 (175)
T ss_dssp TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEEEEEE
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCCEEEE
Confidence 378899999998866655443 3 3589999993 32 24456788888885
No 187
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=59.98 E-value=13 Score=25.84 Aligned_cols=40 Identities=8% Similarity=0.024 Sum_probs=32.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhC--CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK--GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R 192 (197)
+++++|.++++.-+..+++.+++. +.++..++|+.+..++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQ 113 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHH
Confidence 457999999999999999998876 4678889998876543
No 188
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=59.87 E-value=8.3 Score=30.89 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
..++++||.+-.++...+..|+..|+ ++..+.|+++.
T Consensus 203 ~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 203 DTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 35799999998889999999999998 68889998754
No 189
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=59.69 E-value=23 Score=25.85 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=32.1
Q ss_pred CCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
.++||.++++.-+..+++.++.. ++++..++|+.+..++
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 154 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQ 154 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHH
Confidence 47999999999988888777654 7889999999886554
No 190
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=59.36 E-value=7 Score=26.45 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=26.7
Q ss_pred CCCEEEEec-ccccHHHHHHHHH--------hCCC-CeEeecCCCCh
Q psy7789 153 EPPVLIFAE-KKQDVDAIHEYLL--------LKGK-PFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~-s~~~~~~l~~~L~--------~~~~-~~~~~h~~~~~ 189 (197)
..++++||. +-.++...+..|. ..|+ ++..+.||+..
T Consensus 85 ~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 85 KDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp CCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 347899998 7666666666553 4688 68889999865
No 191
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.25 E-value=12 Score=28.84 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=19.1
Q ss_pred CccEEEeehhhhhhcCC-CHHHHHHHHhhc
Q psy7789 58 VCRYLCLDEADRMVDMG-FEEDVRTIFSFF 86 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~-~~~~i~~i~~~~ 86 (197)
.-..+++||+|.+.... ....+..+++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 34589999999997642 344555555544
No 192
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=58.76 E-value=27 Score=20.98 Aligned_cols=40 Identities=5% Similarity=0.048 Sum_probs=25.3
Q ss_pred CEEEEec-ccccH------HHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 155 PVLIFAE-KKQDV------DAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 155 ~~lIF~~-s~~~~------~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
+++||.. ..-.| ....++|.+.|++...+.=+.+++.|++
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~ 49 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDE 49 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHH
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHH
Confidence 4566663 35555 7788888888877666655555555544
No 193
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=58.61 E-value=14 Score=30.14 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=29.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
++++||.++++.-+...++.+++. ++++..++|+.+..++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 98 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchh
Confidence 468999999998888888877664 8999999999976653
No 194
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=58.53 E-value=16 Score=28.88 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=34.6
Q ss_pred chhhHHHHHHHhh-cCCCCEEEEe-ccc-ccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 138 QEAKIVYLLECLQ-KTEPPVLIFA-EKK-QDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 138 ~~~k~~~l~~~l~-~~~~~~lIF~-~s~-~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
..+.+...+..+. ....+++||| .+- ..+...+..|+..|+++..+.||+..
T Consensus 79 ~~~~f~~~l~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~a 133 (373)
T 1okg_A 79 PXAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQA 133 (373)
T ss_dssp CHHHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHH
T ss_pred CHHHHHHHHHHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHHH
Confidence 3344444444332 2345799999 443 34447788899999999999999865
No 195
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=58.49 E-value=36 Score=23.11 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=34.0
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeeh
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDE 66 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDE 66 (197)
|+++..++|+.+..++...+ . +..+|+|+|. .+ ...+++..+++||.-+
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERVNIAFNYD 107 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGCSEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhCCEEEEEC
Confidence 78899999998866655443 3 3589999994 22 2345677888888533
No 196
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=58.25 E-value=13 Score=30.69 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 143 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
.+++..+.. .+++||.++++.-++...+.|+..|+++..+||+.+.+++..
T Consensus 56 ~~~lp~l~~-~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~ 106 (523)
T 1oyw_A 56 CYQIPALLL-NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLE 106 (523)
T ss_dssp HHHHHHHHS-SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHHh-CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 344444433 367999999999999999999999999999999999877654
No 197
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=57.55 E-value=13 Score=28.30 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.1
Q ss_pred CCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
.|+.+..++|+.+...+...+. +..+|+||| +.+. ..+++..+++||.
T Consensus 51 ~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~v~~VI~ 102 (300)
T 3i32_A 51 LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQVDLVVH 102 (300)
T ss_dssp TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCCCSEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccceeEEEE
Confidence 4789999999988766654442 458999999 3433 4567788888874
No 198
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=57.32 E-value=5.9 Score=30.49 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=31.5
Q ss_pred CCCEEEEecccccHHHHHHHHHh-CCCC-eEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLL-KGKP-FFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~-~~~~-~~~~h~~~~~ 189 (197)
..++++||.+=.++...+..|.+ .|++ +..+.|++..
T Consensus 259 ~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~ 297 (318)
T 3hzu_A 259 DDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTE 297 (318)
T ss_dssp TCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHH
T ss_pred CCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 35799999999999999999987 8994 8888888754
No 199
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.20 E-value=32 Score=21.32 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=40.9
Q ss_pred EEEcCchhhHHHHHHHhhcC--CCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 133 VEYVKQEAKIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~~--~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
+..+...+.+..-+.-+.+. -.+.+|..|...-..++.+++.+.||+++.+-.+....+
T Consensus 29 vrdvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdene 89 (134)
T 2lci_A 29 VRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENE 89 (134)
T ss_dssp EEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHH
T ss_pred eeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhH
Confidence 44555555444444444333 248999999998888899989999999988876665554
No 200
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=57.01 E-value=10 Score=30.92 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=36.3
Q ss_pred eeEEEEEcCCChHHhHHH---H-hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhh
Q psy7789 13 LRTCLAIGGVPMNQSLDV---I-KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEAD 68 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~---l-~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad 68 (197)
.++..++|+.+..++.+. + ++..+|+|||+..+..- +++.+++++|+...+
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G-----iDip~v~~vi~~~~~ 426 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG-----ISVKNLHHVVLAHGV 426 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS-----CCCCSEEEEEESSCC
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc-----cccccCcEEEEeCCC
Confidence 488899999876554433 3 34579999997444433 457888999987776
No 201
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=56.95 E-value=14 Score=26.28 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=29.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhC---CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK---GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~R 192 (197)
++++||.++|+.-++.+++.+++. +.++..++|+.+..++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQ 136 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------C
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHH
Confidence 457999999999999999988874 7788999998876654
No 202
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=56.82 E-value=16 Score=31.90 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=30.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
++++||.|+++.-+...++.+++. |+++..+||+.+...+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 339 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhh
Confidence 568999999999888888777664 8999999999976653
No 203
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=56.57 E-value=8 Score=29.09 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=11.6
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
-..+++||+|.+..
T Consensus 131 ~~vl~iDEid~l~~ 144 (309)
T 3syl_A 131 GGVLFIDEAYYLYR 144 (309)
T ss_dssp TSEEEEETGGGSCC
T ss_pred CCEEEEEChhhhcc
Confidence 35999999999863
No 204
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=56.28 E-value=32 Score=21.14 Aligned_cols=48 Identities=25% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHhhcCCCCEEEEe------cccccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 144 YLLECLQKTEPPVLIFA------EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~------~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
.+.++++. .+++||. +..-.|..+..+|.+.|++...+.=+..++.|+
T Consensus 9 ~~~~~i~~--~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~ 62 (105)
T 2yan_A 9 RLKVLTNK--ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQ 62 (105)
T ss_dssp HHHHHHTS--SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHH
T ss_pred HHHHHhcc--CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHH
Confidence 34444433 3688887 456788888888888887766555444444443
No 205
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=56.17 E-value=9.4 Score=33.43 Aligned_cols=43 Identities=2% Similarity=-0.184 Sum_probs=35.5
Q ss_pred CCCEEEEecccccHHHHHHHHHh----CCCCeEeecCCCChhhhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLL----KGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~R~~i 195 (197)
+.+++|.++|+.-++..++.+++ .|+++..+||+++..+|.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~ 463 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKI 463 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHH
Confidence 56899999999888887777654 37999999999999887643
No 206
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=56.15 E-value=19 Score=25.42 Aligned_cols=40 Identities=18% Similarity=-0.026 Sum_probs=31.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhC--------CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK--------GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~R 192 (197)
+.++||.++|+.-++.+++.+++. +..+..++|+.+..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 119 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA 119 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH
Confidence 358999999999998888877643 6788889998876553
No 207
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=56.09 E-value=12 Score=29.97 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=31.0
Q ss_pred CCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
+++++||.+=.++...+..|+..|+ ++..+.|++..
T Consensus 359 ~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~ 395 (423)
T 2wlr_A 359 QQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYE 395 (423)
T ss_dssp SEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHH
Confidence 5799999999999999999999999 58888887653
No 208
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=55.91 E-value=12 Score=30.13 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=38.7
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
.|....+..+...+.++||.|+++.-+...++.+++.|.+ +..+||+.+.
T Consensus 120 GKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~ 170 (472)
T 2fwr_A 120 GKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE 170 (472)
T ss_dssp CHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC
T ss_pred CHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC
Confidence 3444333344444679999999999999999999988888 9999998754
No 209
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=55.90 E-value=32 Score=26.29 Aligned_cols=64 Identities=8% Similarity=0.093 Sum_probs=37.1
Q ss_pred CCCccEEEeehhhh-hhcCCCHHHHHHHHhhccCCceEEEEeecCChh--HHHHHHHhcCCCeEEEeC
Q psy7789 56 LDVCRYLCLDEADR-MVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKK--IQNFARSALVKPITINVG 120 (197)
Q Consensus 56 l~~l~~vViDEad~-l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~i~~~ 120 (197)
+..-+.+|+||+|. +.. ...+.+...++..|++..+++.+.+.++. ...+..........+...
T Consensus 74 f~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp CCSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred ccCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 57788999999998 643 34555666666655566666665444321 223444444444444443
No 210
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=55.88 E-value=25 Score=27.36 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=34.1
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
|+++..++|+.+..++.+.+ . +..+|+|+| +.+. ..+++.++++||.
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 300 GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNVKHVIN 350 (417)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCCEEEEEE
T ss_pred CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCcccCCEEEE
Confidence 68899999998866555443 2 458999999 4544 4456788888874
No 211
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=55.88 E-value=7.3 Score=26.42 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=25.7
Q ss_pred EEEec-ccccHHHHHHHHHh----------CCC-CeEeecCCCCh
Q psy7789 157 LIFAE-KKQDVDAIHEYLLL----------KGK-PFFTLKSLKED 189 (197)
Q Consensus 157 lIF~~-s~~~~~~l~~~L~~----------~~~-~~~~~h~~~~~ 189 (197)
++||. +-.++...+..|++ .|+ ++..+.||+..
T Consensus 93 v~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~ 137 (161)
T 1c25_A 93 VFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKE 137 (161)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHH
T ss_pred EEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHH
Confidence 45798 77888888888875 387 68899998764
No 212
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=55.48 E-value=22 Score=23.85 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=11.7
Q ss_pred CccEEEeehhhhhh
Q psy7789 58 VCRYLCLDEADRMV 71 (197)
Q Consensus 58 ~l~~vViDEad~l~ 71 (197)
.-.++++||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 115 GNVILFIDELHTMV 128 (195)
T ss_dssp TTEEEEEETGGGGT
T ss_pred CCeEEEEeCHHHHh
Confidence 34589999999996
No 213
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.44 E-value=10 Score=28.97 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
...+.+++||+|.+... ....+..+++..+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999998542 2344555555555555555544
No 214
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=55.03 E-value=39 Score=21.69 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCCEEEEecc------cccHHHHHHHHHhCCCC---eEeecCCCChhhhhh
Q psy7789 143 VYLLECLQKTEPPVLIFAEK------KQDVDAIHEYLLLKGKP---FFTLKSLKEDQNNQT 194 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s------~~~~~~l~~~L~~~~~~---~~~~h~~~~~~~R~~ 194 (197)
+.+.++++.+ +++||..+ .-.|....++|.+.|++ ...+.=...++.|+.
T Consensus 7 ~~v~~~i~~~--~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~ 65 (121)
T 3gx8_A 7 KAIEDAIESA--PVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREG 65 (121)
T ss_dssp HHHHHHHHSC--SEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHH
T ss_pred HHHHHHhccC--CEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHH
Confidence 3444444444 69999874 88899999999998876 444443444444444
No 215
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=54.42 E-value=26 Score=24.74 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=27.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
.+++||.++++.-+..+++.++.. +.++..++|+.+..++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH
Confidence 358999999999999888877653 6788999998876554
No 216
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=54.34 E-value=77 Score=27.02 Aligned_cols=54 Identities=9% Similarity=0.226 Sum_probs=40.4
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhh
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMV 71 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~ 71 (197)
|+++..++|+.+..++.+.+ . +..+|+|||. .+ ...+++.++++||+-++|.+.
T Consensus 469 gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v~lVi~~d~d~~G 526 (661)
T 2d7d_A 469 GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEVSLVAILDADKEG 526 (661)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTEEEEEETTTTCCT
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCCCEEEEeCccccc
Confidence 78888899988766655543 3 4589999994 33 355678899999999998763
No 217
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=54.01 E-value=22 Score=24.72 Aligned_cols=39 Identities=3% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCEEEEecccccHHHHHHHHHhC-----CCCeEeecCCCChhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK-----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~R 192 (197)
.+++|.++++.-++.+++.+++. +.++..++|+.+..+.
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 115 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD 115 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH
Confidence 47999999999999888887653 6788899999876543
No 218
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=53.90 E-value=12 Score=27.77 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=11.3
Q ss_pred ccEEEeehhhhhh
Q psy7789 59 CRYLCLDEADRMV 71 (197)
Q Consensus 59 l~~vViDEad~l~ 71 (197)
-..+++||+|.+.
T Consensus 111 ~~vl~iDEid~l~ 123 (285)
T 3h4m_A 111 PSIIFIDEIDAIA 123 (285)
T ss_dssp SEEEEEETTHHHH
T ss_pred CeEEEEECHHHhc
Confidence 4589999999996
No 219
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=53.43 E-value=38 Score=21.05 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCEEEEec------ccccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 154 PPVLIFAE------KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 154 ~~~lIF~~------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
.+++||.. +.-.|..+..+|.+.|++...+.=+..++.|++
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~ 61 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQG 61 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHH
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHH
Confidence 36888876 567899999999999888777665555554443
No 220
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=53.39 E-value=34 Score=20.53 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=37.8
Q ss_pred chhhHHHHHHHhhcCCCCEEEEecc--cccHHHHHHHHHhCCCCeEeecCCCChh
Q psy7789 138 QEAKIVYLLECLQKTEPPVLIFAEK--KQDVDAIHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~~~~~lIF~~s--~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
+......++.-.+..++|.+||+|. ..++.+..+.-++.|++-..+.+.-+.+
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpee 90 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEE 90 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHH
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHH
Confidence 3344555556666777899999975 5677888888888898777777765544
No 221
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.20 E-value=12 Score=28.76 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=12.4
Q ss_pred ccEEEeehhhhhhcC
Q psy7789 59 CRYLCLDEADRMVDM 73 (197)
Q Consensus 59 l~~vViDEad~l~~~ 73 (197)
-..+++||+|.+.+.
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 558999999999853
No 222
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=53.17 E-value=10 Score=26.49 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCChHHhH---HHHh-cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 12 PLRTCLAIGGVPMNQSL---DVIK-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~---~~l~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
|+++..++|+.+..++. +.+. +..+|+|+|. .+. ..+++..+++||.
T Consensus 70 g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 70 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNVKHVIN 120 (185)
T ss_dssp TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBSEEEE
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccCCEEEE
Confidence 68899999997654433 3333 4589999993 332 3345677888875
No 223
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=52.85 E-value=38 Score=24.17 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=38.5
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
+....+...+.....++-||+|. ..+++.+.....+..+.-+||+.+++.-+
T Consensus 40 ~~a~~i~~~~~~~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~~~ 91 (203)
T 1v5x_A 40 EAARAIGEALGPFVVRVGVFRDQ--PPEEVLRLMEEARLQVAQLHGEEPPEWAE 91 (203)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSC--CHHHHHHHHHHTTCSEEEECSCCCHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHHHH
Confidence 45555665555444578999976 47788888888899999999998776533
No 224
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=52.76 E-value=28 Score=21.44 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=24.5
Q ss_pred CEEEEe-cccccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 155 PVLIFA-EKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 155 ~~lIF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
++.||. +..-.|..+..+|.+.|++...+.=+..++.++
T Consensus 17 ~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~ 56 (99)
T 3qmx_A 17 KIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEARE 56 (99)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHH
T ss_pred CEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHH
Confidence 566665 556777777777777776665555444444444
No 225
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.55 E-value=6.9 Score=29.46 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=23.2
Q ss_pred CccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 58 VCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 58 ~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
.-+.+|+||+|.+... ....+..++...+....+++.+
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4789999999998542 1233444455544555666554
No 226
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=52.50 E-value=12 Score=28.94 Aligned_cols=39 Identities=10% Similarity=-0.006 Sum_probs=22.0
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
..-+.+||||+|.+... ....+...+...+....+++.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999998432 2333444444433344444443
No 227
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=51.21 E-value=6.3 Score=30.59 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=11.1
Q ss_pred CccEEEeehhhhh
Q psy7789 58 VCRYLCLDEADRM 70 (197)
Q Consensus 58 ~l~~vViDEad~l 70 (197)
....+++||+|.+
T Consensus 125 ~~~vlilDE~~~l 137 (389)
T 1fnn_A 125 LYMFLVLDDAFNL 137 (389)
T ss_dssp CCEEEEEETGGGS
T ss_pred CeEEEEEECcccc
Confidence 3558999999998
No 228
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=51.09 E-value=8.2 Score=31.37 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=32.1
Q ss_pred CCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCChh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKEDQ 190 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~ 190 (197)
+++++||.+-.++...+..|+..|+ ++..+.|+++.=
T Consensus 428 ~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W 465 (474)
T 3tp9_A 428 GSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAW 465 (474)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHH
Confidence 5799999999999999999999999 489998887643
No 229
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=50.84 E-value=5.9 Score=29.95 Aligned_cols=39 Identities=8% Similarity=-0.063 Sum_probs=31.8
Q ss_pred CCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
+-+|||.|+..+++.|.+.|++.|+++.. +.+++.++-.
T Consensus 44 G~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~ 82 (272)
T 3h11_A 44 GICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGIS 82 (272)
T ss_dssp EEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHH
T ss_pred eEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHH
Confidence 35899999999999999999999998764 5566666543
No 230
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.80 E-value=43 Score=20.99 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=26.3
Q ss_pred CEEEEe-cccccHH------HHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 155 PVLIFA-EKKQDVD------AIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 155 ~~lIF~-~s~~~~~------~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
++.||. +..-.|. .+..+|.+.|++...+.=+..++.|+++
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l 56 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWM 56 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHH
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHH
Confidence 566666 4455566 7888888888776666655555555543
No 231
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=50.56 E-value=36 Score=28.75 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 25 NQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 25 ~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
......+-..++||++|. .......+.-...+++|||||... ..+. .++..+....+++++.
T Consensus 310 ~~~~~~~l~~~~vI~~T~----~~~~~~~l~~~~fd~viIDEAsQ~----~e~~--~li~l~~~~~~~ilvG 371 (624)
T 2gk6_A 310 RTAERELLMNADVICCTC----VGAGDPRLAKMQFRSILIDESTQA----TEPE--CMVPVVLGAKQLILVG 371 (624)
T ss_dssp HHHHHHHHHTCSEEEEET----GGGGCGGGTTCCCSEEEETTGGGS----CHHH--HHHHHTTTBSEEEEEE
T ss_pred HHHHHHHHhcCCEEEEcC----hhhcchhhhcCCCCEEEEeccccc----CcHH--HHHHHHhcCCeEEEec
No 232
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=50.08 E-value=22 Score=30.57 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=25.7
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
+...+++|||||-.+ =.+.+..++... ..++||.|+.
T Consensus 253 ~~~~dlliVDEAAaI----p~pll~~ll~~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 253 DEQADWLVVDEAAAI----PAPLLHQLVSRF----PRTLLTTTVQ 289 (671)
T ss_dssp CCCCSEEEEETGGGS----CHHHHHHHHTTS----SEEEEEEEBS
T ss_pred cccCCEEEEEchhcC----CHHHHHHHHhhC----CeEEEEecCC
Confidence 456899999999887 345555555533 3577888864
No 233
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=49.77 E-value=27 Score=26.46 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=35.9
Q ss_pred CchhhHHHHHHHhh-cCCCCEEEEecc---cccHHHHHHHHHhCCCC-eEeecCCCCh
Q psy7789 137 KQEAKIVYLLECLQ-KTEPPVLIFAEK---KQDVDAIHEYLLLKGKP-FFTLKSLKED 189 (197)
Q Consensus 137 ~~~~k~~~l~~~l~-~~~~~~lIF~~s---~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 189 (197)
+..+.+...+..+- ....+++|||.+ ...+..++..|+..|++ +..+.||+..
T Consensus 90 p~~~~~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~ 147 (302)
T 3olh_A 90 PGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRH 147 (302)
T ss_dssp CCHHHHHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHH
Confidence 34445555554442 334579999964 34588888999999984 8888887654
No 234
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=49.50 E-value=31 Score=30.51 Aligned_cols=58 Identities=9% Similarity=-0.118 Sum_probs=41.3
Q ss_pred CchhhHHHHHHHhh--cCCCCEEEEecccccHHHHHHHH----HhCCCCeEeecCCCChhhhhh
Q psy7789 137 KQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYL----LLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 137 ~~~~k~~~l~~~l~--~~~~~~lIF~~s~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~R~~ 194 (197)
++...+..++.++. ..+.+++|-++|+.=|...++.+ +..|+++.++.|+++.++|..
T Consensus 97 GsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~ 160 (853)
T 2fsf_A 97 GEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKRE 160 (853)
T ss_dssp TSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH
Confidence 34444555555542 23458999999998777766665 445999999999999877654
No 235
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=49.44 E-value=41 Score=25.12 Aligned_cols=40 Identities=3% Similarity=-0.101 Sum_probs=33.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
+.++||.++++.-++.+++.+++. +.++..++|+.+..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQ 99 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHH
Confidence 568999999999999999888753 5789999999887654
No 236
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=49.18 E-value=19 Score=31.82 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=41.4
Q ss_pred CchhhHHHHHHHh-hc-CCCCEEEEecccccHHHHHHHHH----hCCCCeEeecCCCChhhhhh
Q psy7789 137 KQEAKIVYLLECL-QK-TEPPVLIFAEKKQDVDAIHEYLL----LKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 137 ~~~~k~~~l~~~l-~~-~~~~~lIF~~s~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~R~~ 194 (197)
.+..-+.+.+.++ +. .+++++|.++|+.=|...++++. ..|+++.++.|+++.++|..
T Consensus 106 GeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~ 169 (844)
T 1tf5_A 106 GEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE 169 (844)
T ss_dssp TSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 3444455555544 22 34579999999988877776654 45999999999999887754
No 237
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=48.97 E-value=30 Score=22.88 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCCEEEEec------ccccHHHHHHHHHhCCCCeEeecCCCChhhhhhh
Q psy7789 142 IVYLLECLQKTEPPVLIFAE------KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~i 195 (197)
...+.+++... +++||+. +.-.|..+..+|.+.|++...+.=...++.|+++
T Consensus 25 ~~~v~~~i~~~--~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L 82 (135)
T 2wci_A 25 IEKIQRQIAEN--PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAEL 82 (135)
T ss_dssp HHHHHHHHHHC--SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHH
T ss_pred HHHHHHHhccC--CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHH
Confidence 34444444443 6888976 5778999999999999877666555455555443
No 238
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.92 E-value=16 Score=28.29 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=21.7
Q ss_pred EEEeehhhhhhcCCCHHH-HHHHHhhccCCceEEEEeec
Q psy7789 61 YLCLDEADRMVDMGFEED-VRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 61 ~vViDEad~l~~~~~~~~-i~~i~~~~~~~~q~i~~SAT 98 (197)
.+++||+|.+........ +..+++.. ....+++.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999999976432334 44554444 34444444433
No 239
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=48.22 E-value=52 Score=21.08 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHhhcCCCCEEEEec------ccccHHHHHHHHHhCCCC-eEeecCCCChhhhhhh
Q psy7789 144 YLLECLQKTEPPVLIFAE------KKQDVDAIHEYLLLKGKP-FFTLKSLKEDQNNQTL 195 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~~------s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~R~~i 195 (197)
.+.++++.. +++||.. ..-.|....++|.+.|++ ...+.=+..++.|+.+
T Consensus 12 ~v~~~i~~~--~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l 68 (118)
T 2wem_A 12 QLDALVKKD--KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI 68 (118)
T ss_dssp HHHHHHHHS--SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHH
T ss_pred HHHHHhccC--CEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHH
Confidence 444444444 6999997 488999999999999984 6666544455555543
No 240
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=47.93 E-value=12 Score=24.68 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=21.2
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
..+++||+|.+... ....+..++...+.+.++|+.|.
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEES
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEECC
Confidence 47899999998432 23344444444444555554443
No 241
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=46.88 E-value=12 Score=24.93 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCCEEEEeccccc-------HHH---HHHHHHhCCCCeEeecCCCChh
Q psy7789 153 EPPVLIFAEKKQD-------VDA---IHEYLLLKGKPFFTLKSLKEDQ 190 (197)
Q Consensus 153 ~~~~lIF~~s~~~-------~~~---l~~~L~~~~~~~~~~h~~~~~~ 190 (197)
..++++||.+-.+ +.. +...+...|+++..+.||+..=
T Consensus 92 ~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~~W 139 (154)
T 1hzm_A 92 TDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKF 139 (154)
T ss_dssp SSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHHHH
T ss_pred CCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHHHH
Confidence 3579999976432 233 3444445698888899998653
No 242
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=46.70 E-value=66 Score=21.92 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=32.7
Q ss_pred hhhHHHHHHHhh---cCCCCEEEEecccccHHHHHHHHHhCCCCeEeecC
Q psy7789 139 EAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKS 185 (197)
Q Consensus 139 ~~k~~~l~~~l~---~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~ 185 (197)
.+-...+.+.+. ...+.+.|.|.+...+..+.+.|.+.|+++..+.+
T Consensus 44 ~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~ 93 (174)
T 3dmn_A 44 EAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQT 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSS
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeecc
Confidence 333444444443 23456888899999999999999998887665554
No 243
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=46.60 E-value=40 Score=24.11 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=37.3
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
+....+...+.....++-||+|. +.+++.+.....+..+.-+||+.+++.-
T Consensus 41 ~~a~~i~~~~~~~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~~ 91 (205)
T 1nsj_A 41 EDARRISVELPPFVFRVGVFVNE--EPEKILDVASYVQLNAVQLHGEEPIELC 91 (205)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSC--CHHHHHHHHHHHTCSEEEECSCCCHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHHH
Confidence 45555665555445578999976 4677777778889999999999877653
No 244
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=46.56 E-value=56 Score=21.06 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCCEEEEecc------cccHHHHHHHHHhCCC-CeEeecCCCChhhhhhh
Q psy7789 143 VYLLECLQKTEPPVLIFAEK------KQDVDAIHEYLLLKGK-PFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s------~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~R~~i 195 (197)
+.+.++++++ +++||.-+ .-.|....++|...|+ +...+.=...++-|+.+
T Consensus 11 e~i~~~i~~~--~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l 68 (118)
T 2wul_A 11 EQLDALVKKD--KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI 68 (118)
T ss_dssp HHHHHHHHHS--SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHH
T ss_pred HHHHHHHhcC--CEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHH
Confidence 3445555554 69999753 6678888899999887 34445444445555543
No 245
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=46.25 E-value=17 Score=25.97 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=27.2
Q ss_pred CCE--EEEec-ccccHHHHHHHHHh----------CCC-CeEeecCCCCh
Q psy7789 154 PPV--LIFAE-KKQDVDAIHEYLLL----------KGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~--lIF~~-s~~~~~~l~~~L~~----------~~~-~~~~~h~~~~~ 189 (197)
.++ ++||. +-.++...+..|++ .|+ ++..+.||+..
T Consensus 110 ~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~ 159 (211)
T 1qb0_A 110 KRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKE 159 (211)
T ss_dssp SEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHH
T ss_pred CCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHH
Confidence 355 67898 77778888888875 588 68889898753
No 246
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=46.04 E-value=10 Score=28.46 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.7
Q ss_pred CCccEEEeehhhhhh
Q psy7789 57 DVCRYLCLDEADRMV 71 (197)
Q Consensus 57 ~~l~~vViDEad~l~ 71 (197)
..-+.+++||+|.+.
T Consensus 101 ~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 101 APFKIIFLDEADALT 115 (319)
T ss_dssp CCCEEEEEETGGGSC
T ss_pred CCceEEEEeCCCcCC
Confidence 557899999999984
No 247
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=46.01 E-value=11 Score=31.06 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=37.2
Q ss_pred CCCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehh
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEA 67 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEa 67 (197)
+.|+.+..++|+.+...+.+.+. +..+|+|||. .+. ..+++.++++||.-..
T Consensus 364 ~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 364 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPNVHEVLQIGV 419 (563)
T ss_dssp TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTTCCEEEEESC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh-cCCCcccCCEEEEECC
Confidence 34788999999988666554432 4589999994 443 4567888999985543
No 248
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=45.88 E-value=23 Score=24.81 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=24.9
Q ss_pred CEEEEeccc-----------ccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 155 PVLIFAEKK-----------QDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 155 ~~lIF~~s~-----------~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.+||+.|.. .+++.|++.|++.|+++.. +.+++.++
T Consensus 45 ~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~-~~dlt~~e 91 (178)
T 2h54_A 45 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASD 91 (178)
T ss_dssp EEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHH
T ss_pred EEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHH
Confidence 377777653 7788888888888888754 44555554
No 249
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=45.47 E-value=30 Score=25.05 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=31.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
.+++||.++|+.-+..+++.+++. +.++..++|+.+..+.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 143 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH
Confidence 358999999999999888877653 5778889998876553
No 250
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=44.88 E-value=29 Score=29.43 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=31.5
Q ss_pred CCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQN 191 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 191 (197)
+++||.++|+.-+...++.+++. |+++..++|+.+...
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 103 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENV 103 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccc
Confidence 68999999998888888877654 789999999986543
No 251
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=44.38 E-value=27 Score=29.98 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=38.0
Q ss_pred CeeEEEEEcCCChH---HhHHHHhc---CCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhh
Q psy7789 12 PLRTCLAIGGVPMN---QSLDVIKK---GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 12 ~i~~~~~~gg~~~~---~~~~~l~~---~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l 70 (197)
|+++..++|+.+.. .+.+.+.. ..+|+||| +.+. ..+++ .+++||.-....+
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~e-~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAIG-MGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGGG-SSCCC-CBSEEEESCSBC-
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHHH-CCcCc-CccEEEECCcccc
Confidence 68899999998866 44455653 47999999 4444 45567 8999998777654
No 252
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=44.18 E-value=21 Score=24.11 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 163 KQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
..+++.|.+.|++.|+++.. +.+++.++
T Consensus 40 ~~D~~~L~~~f~~LgF~V~~-~~dlt~~e 67 (146)
T 2dko_A 40 DVDAANLRETFRNLKYEVRN-KNDLTREE 67 (146)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-eeCCCHHH
Confidence 34677777777778877653 44455554
No 253
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=44.02 E-value=18 Score=27.40 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=20.8
Q ss_pred cEEEeehhhhhhcC------CCHHHHHHHHhhccCCceEEEEe
Q psy7789 60 RYLCLDEADRMVDM------GFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 60 ~~vViDEad~l~~~------~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
-++|+||+|.+.+. .+...+..+.... ++..+++.+
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g 171 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTG 171 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEEC
Confidence 47899999998751 2334444444443 344555543
No 254
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=43.96 E-value=41 Score=25.38 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=23.3
Q ss_pred cEEEeehhhhhhc---CCCHHHHHHHHhhccCCceEEEEee
Q psy7789 60 RYLCLDEADRMVD---MGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 60 ~~vViDEad~l~~---~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
-++|+||+|.+.. ..+...+..+.... +...+++.+.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~ 178 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGS 178 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEES
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcC
Confidence 4789999999864 34666666665543 2444444443
No 255
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=43.95 E-value=1e+02 Score=23.38 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=37.1
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhh
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR 69 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~ 69 (197)
|+++..++|+.+..++.+.+ . +..+|+|+|. .+. ..+++.++++||.-+...
T Consensus 267 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 267 GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA-RGIDIPTVSMVVNYDLPT 322 (395)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS-SSCCCTTEEEEEESSCCB
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-cCCCcccCCEEEEcCCCC
Confidence 67888999998866655443 3 3589999994 333 556788999998755543
No 256
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=43.24 E-value=13 Score=30.93 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCCeeEEEEEcCCChHHhHHHHh----cCCcEEEeCchHHHHHHhcCCccCCCccEEEeehh
Q psy7789 10 PIPLRTCLAIGGVPMNQSLDVIK----KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEA 67 (197)
Q Consensus 10 ~~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEa 67 (197)
+.|+.+..++|+.+..++.+.+. +..+|||||. .+. ..+++.++++||.-..
T Consensus 313 ~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~-~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 313 KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPNVHEVLQIGV 368 (579)
T ss_dssp TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTTCCEEEEESC
T ss_pred cCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh-cCCCcccCCEEEEcCC
Confidence 34788999999988666554432 4689999993 444 4567888999986553
No 257
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=43.17 E-value=18 Score=28.29 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=30.7
Q ss_pred CC-ccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 57 DV-CRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 57 ~~-l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
.+ .+.+++||...-++......+..++..+....|+++.|.
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th 344 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITH 344 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEES
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEC
Confidence 45 789999999988887667777777777765667665553
No 258
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=43.06 E-value=22 Score=26.73 Aligned_cols=30 Identities=7% Similarity=-0.193 Sum_probs=20.2
Q ss_pred ccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 162 KKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 162 s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
+..+++.|.+.|++.|+++. .+.+++.++-
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em 76 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQI 76 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHH
Confidence 34677888888888888765 4455665553
No 259
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=42.97 E-value=28 Score=27.00 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=34.3
Q ss_pred CeeEEEEEcCCChHHhHHHH---h-cCCcEEEeCchHHHHHHhcCCccCCCccEEEe
Q psy7789 12 PLRTCLAIGGVPMNQSLDVI---K-KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64 (197)
Q Consensus 12 ~i~~~~~~gg~~~~~~~~~l---~-~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vVi 64 (197)
|+++..++|+.+..++.+.+ . +..+|+|+|. .+. ..+++.++++||.
T Consensus 290 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~~~~Vi~ 340 (412)
T 3fht_A 290 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQVSVVIN 340 (412)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-SSCCCTTEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc-cCCCccCCCEEEE
Confidence 67889999998866655444 3 3589999993 443 5567888999884
No 260
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=42.49 E-value=34 Score=30.57 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=29.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
++++||.++++.-+..+++.+++. ++++..+||+.+...+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~ 339 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 339 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhH
Confidence 468999999998888887777654 8999999999976653
No 261
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=42.21 E-value=72 Score=24.40 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=33.2
Q ss_pred CCCEEEEecccccHHHHHHHHHh----CCCCeEeecCCCChhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLL----KGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~R~ 193 (197)
++++||.|+++.-+..+++.+.+ .+.++..++|+.+..++.
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 133 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA 133 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHH
Confidence 45899999999999888887765 368899999998876543
No 262
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=42.04 E-value=23 Score=27.12 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.2
Q ss_pred CEEEEecc-----------cccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 155 PVLIFAEK-----------KQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 155 ~~lIF~~s-----------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
-+|||+|. ..+++.|++.|++.|++|. .+.+++.++-.
T Consensus 62 ~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~ 110 (302)
T 3e4c_A 62 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMT 110 (302)
T ss_dssp EEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHH
T ss_pred EEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHH
Confidence 38999998 5789999999999999976 55566666643
No 263
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=41.86 E-value=28 Score=27.77 Aligned_cols=41 Identities=10% Similarity=-0.065 Sum_probs=33.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R~ 193 (197)
.+++||.++|++-+..+++.+++. +.++..++|+.+..++.
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 173 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQN 173 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHH
Confidence 357999999999999998888764 57888999998876543
No 264
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=41.81 E-value=13 Score=29.37 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.4
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
+++++||...=++......+...++.+....|+++.|.-
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999999877766677777777777666788877654
No 265
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=41.79 E-value=42 Score=29.45 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
++||++|. .......+.-...+++|||||-.. .... .++..+....+++++.
T Consensus 496 a~VI~~T~----~~~~~~~l~~~~fd~viIDEAsQ~----~e~~--~li~l~~~~~~~ilvG 547 (800)
T 2wjy_A 496 ADVICCTC----VGAGDPRLAKMQFRSILIDESTQA----TEPE--CMVPVVLGAKQLILVG 547 (800)
T ss_dssp CSEEEEET----GGGGCTTTTTCCCSEEEETTGGGS----CHHH--HHHHHTTTBSEEEEEE
T ss_pred CCEEEEch----hhhCChhhhcCCCCEEEEECCCCC----CcHH--HHHHHHhcCCeEEEec
No 266
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=41.51 E-value=29 Score=30.92 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=39.6
Q ss_pred chhhHHHHHHHh-hc-CCCCEEEEecccccHHHHHHHH----HhCCCCeEeecCCCChhhhhh
Q psy7789 138 QEAKIVYLLECL-QK-TEPPVLIFAEKKQDVDAIHEYL----LLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 138 ~~~k~~~l~~~l-~~-~~~~~lIF~~s~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~R~~ 194 (197)
+...+...+.++ +. .+.+++|-++|+.=|...++++ +..|+++.++.|+++.++|..
T Consensus 135 eGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~ 197 (922)
T 1nkt_A 135 EGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRV 197 (922)
T ss_dssp SCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 333444444442 22 3457999999987776666655 456999999999999887764
No 267
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=41.43 E-value=33 Score=25.27 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=32.7
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
.-...+.+++...+.+.-|||.+...+..+.+.|++.|++
T Consensus 173 ~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 173 GGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 3345677777777778999999999999999999999865
No 268
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=39.46 E-value=51 Score=23.55 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=27.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 191 (197)
+.++||.++++.-+..+++.+++. +..+..++|+.+..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 140 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN 140 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH
Confidence 358999999999999998888754 567888888776443
No 269
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=39.33 E-value=37 Score=30.76 Aligned_cols=42 Identities=7% Similarity=-0.095 Sum_probs=34.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhC----CC----CeEeecCCCChhhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLK----GK----PFFTLKSLKEDQNNQ 193 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~----~~----~~~~~h~~~~~~~R~ 193 (197)
.++++||.++|+.-|..+++.++.. +. ++..++|+.+..+|.
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~ 147 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKE 147 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHH
Confidence 4568999999999998888887643 56 899999999988753
No 270
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=39.19 E-value=37 Score=23.54 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=28.3
Q ss_pred CEEEEeccc--ccHHHHHHHHHhCCCCeEeecC-CCCh
Q psy7789 155 PVLIFAEKK--QDVDAIHEYLLLKGKPFFTLKS-LKED 189 (197)
Q Consensus 155 ~~lIF~~s~--~~~~~l~~~L~~~~~~~~~~h~-~~~~ 189 (197)
.++||+++- ..+.+++..++++|.++..+.+ .-+.
T Consensus 80 ~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~ 117 (170)
T 3jx9_A 80 RVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTE 117 (170)
T ss_dssp EEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhc
Confidence 689999874 3478899999999999999998 4443
No 271
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=39.16 E-value=19 Score=26.08 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=26.1
Q ss_pred EEEEec-ccccHHHHHHHHHhC----------CC-CeEeecCCCCh
Q psy7789 156 VLIFAE-KKQDVDAIHEYLLLK----------GK-PFFTLKSLKED 189 (197)
Q Consensus 156 ~lIF~~-s~~~~~~l~~~L~~~----------~~-~~~~~h~~~~~ 189 (197)
+++||. +-.++...+..|+.. |+ ++..+.||+..
T Consensus 127 VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~a 172 (216)
T 3op3_A 127 IVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRD 172 (216)
T ss_dssp EEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHH
Confidence 889999 888888888888865 66 68889998754
No 272
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=38.88 E-value=42 Score=25.45 Aligned_cols=15 Identities=13% Similarity=0.281 Sum_probs=12.2
Q ss_pred CccEEEeehhhhhhc
Q psy7789 58 VCRYLCLDEADRMVD 72 (197)
Q Consensus 58 ~l~~vViDEad~l~~ 72 (197)
.-..+++||+|.+..
T Consensus 110 ~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 110 KPSIIFIDQVDALTG 124 (322)
T ss_dssp SSEEEEEECGGGGSC
T ss_pred CCeEEEechhhhhhc
Confidence 346899999999965
No 273
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.75 E-value=69 Score=28.11 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhHHHHhcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 25 NQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 25 ~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
......+-..++||++|- ..+....+.- .++++|||||-.. ...+ .++..+....+++++.
T Consensus 489 ~~~~~~~l~~a~VI~~T~----~~~~~~~L~~-~fd~viIDEA~q~----~e~~--~li~l~~~~~~lilvG 549 (802)
T 2xzl_A 489 RKTEAEILNKADVVCCTC----VGAGDKRLDT-KFRTVLIDESTQA----SEPE--CLIPIVKGAKQVILVG 549 (802)
T ss_dssp HHHHHHHHHTCSEEEEET----TGGGCTTCCS-CCSEEEETTGGGS----CHHH--HHHHHTTTBSEEEEEE
T ss_pred HHHHHHHhccCCEEEech----hhcChHHHhc-cCCEEEEECcccc----chHH--HHHHHHhCCCEEEEEe
No 274
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=38.74 E-value=35 Score=25.19 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 143 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 143 ~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
..+.+++...+.+.-|||.+...+..+.+.|++.|++
T Consensus 186 ~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 186 AAATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHHTSTTCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 5666777776678899999999999999999999875
No 275
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=38.61 E-value=69 Score=23.64 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=24.8
Q ss_pred chhhHHHHHHHhhcCCCCEEEEecc---cccHHHHHHHHHhC--CCCeEeecC
Q psy7789 138 QEAKIVYLLECLQKTEPPVLIFAEK---KQDVDAIHEYLLLK--GKPFFTLKS 185 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~~~~~lIF~~s---~~~~~~l~~~L~~~--~~~~~~~h~ 185 (197)
.+++.+.+.+.++..+.+++.+.-. .+.++.+.+...+. ++++.+-.+
T Consensus 40 ~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 40 LEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4556666776676666666666533 33444444433332 344444433
No 276
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=38.35 E-value=37 Score=24.83 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=32.1
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
-...+.++++..+.+..|||.+...+..+.+.|++.|++
T Consensus 175 ~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 175 GVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 345667777777678899999999999999999999864
No 277
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=38.30 E-value=19 Score=23.64 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=20.6
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhc-cCCceEEEEeec
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFF-RGQRQTLLFSAT 98 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT 98 (197)
..+++||+|.+... ....+..++..- +.+.++|+.|..
T Consensus 77 ~~l~lDei~~l~~~-~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 77 GVLYVGDIAQYSRN-IQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp SEEEEEECTTCCHH-HHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CeEEEeChHHCCHH-HHHHHHHHHHhCCCCCEEEEEecCC
Confidence 58999999998432 222233333322 334556655544
No 278
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=38.01 E-value=20 Score=27.92 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=11.7
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
--++|+||+|.+..
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 44899999999975
No 279
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=38.00 E-value=24 Score=28.91 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeE
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFF 181 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~ 181 (197)
...|...++..+.++++.|.|..+++.+.+.|.+.|+++.
T Consensus 371 ~~~L~~~~~~~~~rVvi~a~s~~r~erL~~~L~~~~i~~~ 410 (483)
T 3hjh_A 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQ 410 (483)
T ss_dssp THHHHHHHHHCCSCEEEEESCSSTTTTTHHHHGGGTCCCE
T ss_pred HHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHcCCCce
Confidence 4566666654457899999999999999999999887543
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=37.96 E-value=13 Score=26.21 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCCccEEEeehhhhhh--cCCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 56 LDVCRYLCLDEADRMV--DMGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 56 l~~l~~vViDEad~l~--~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
..+.+++++||+..+- +..+.+.+..+++. ...+++-+.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 4677899999988873 33355566665553 223444456653
No 281
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=37.69 E-value=37 Score=24.90 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 176 ~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 176 RDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp HHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 45667777777678899999999999999999999864
No 282
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=37.65 E-value=40 Score=24.77 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+.-|||.+...+..+.+.|++.|++
T Consensus 173 ~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 210 (289)
T 3k9c_A 173 AEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRD 210 (289)
T ss_dssp HHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 45666777777778999999999999999999998864
No 283
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=37.58 E-value=28 Score=28.54 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=27.0
Q ss_pred ccEEEeehhhhhhcCC----------CHHHHHHHHhhccCCceEEEEeecCCh
Q psy7789 59 CRYLCLDEADRMVDMG----------FEEDVRTIFSFFRGQRQTLLFSATMPK 101 (197)
Q Consensus 59 l~~vViDEad~l~~~~----------~~~~i~~i~~~~~~~~q~i~~SAT~~~ 101 (197)
...+++||+|.+.... ....+...+........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3589999999997531 123344445555555667777777554
No 284
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=37.27 E-value=28 Score=25.53 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCEEEEecccccHHHHHHHHHhCC--CCeEeecCCCChhhhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKG--KPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~R~~i 195 (197)
+++.|+++|-+++++..+.|.+.+ -++.++ ..++++++|
T Consensus 27 ~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i 67 (227)
T 3gr1_A 27 KMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRI 67 (227)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHH
T ss_pred CcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHH
Confidence 356677777777777777666655 344444 444445444
No 285
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=37.03 E-value=78 Score=23.05 Aligned_cols=40 Identities=10% Similarity=-0.011 Sum_probs=32.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
+.++||.++|+.-++..++.+++. +..+..++|+.+..++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 169 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 169 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHH
Confidence 457999999999999988888763 6678889998876654
No 286
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=37.03 E-value=1.1e+02 Score=21.77 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=31.4
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK 178 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~ 178 (197)
-...+.+++...+.+..|||.+...+..+.+.|++.|+
T Consensus 174 ~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 174 ARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCceEEEECCchhhhHHHHHHHHcCC
Confidence 34566677777767889999999999999999999985
No 287
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=37.00 E-value=7.2 Score=31.75 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCEEEEecccccHHHHHHHHHhCCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 189 (197)
.++++||.+-.++...+..|+..|+ ++..+-|+++.
T Consensus 426 ~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 462 (466)
T 3r2u_A 426 DVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKD 462 (466)
T ss_dssp -------------------------------------
T ss_pred CeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 4799999999999999999999998 78888898864
No 288
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=36.91 E-value=1.2e+02 Score=21.97 Aligned_cols=44 Identities=7% Similarity=-0.007 Sum_probs=34.2
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC-CeEee
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTL 183 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~ 183 (197)
.-...+.+++...+.+..|||.+...+..+.+.|++.|+ ++..+
T Consensus 181 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vi 225 (293)
T 3l6u_A 181 TSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVV 225 (293)
T ss_dssp HHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCCCeEEE
Confidence 344566777777777889999999999999999999987 44333
No 289
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=36.89 E-value=38 Score=23.76 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=28.1
Q ss_pred CCEEEEeccc--------------ccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 154 PPVLIFAEKK--------------QDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 154 ~~~lIF~~s~--------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
+-+|||+|.. .+++.|.+.|++.|+++..+ .+++.++-.
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~ 97 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELL 97 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHH
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHH
Confidence 3488888753 57888999999999987644 456666543
No 290
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.59 E-value=42 Score=24.47 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=32.5
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
.-...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 178 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 178 SGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 3455677777777678899999999999999999999864
No 291
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.47 E-value=19 Score=27.55 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=27.5
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
..-+++++||...-++......+..+++.+....|+++.|--
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~ 281 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 455788888887777655566666666666445566665544
No 292
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=35.92 E-value=40 Score=23.71 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=11.3
Q ss_pred CccEEEeehhhhh
Q psy7789 58 VCRYLCLDEADRM 70 (197)
Q Consensus 58 ~l~~vViDEad~l 70 (197)
..++|++||+..+
T Consensus 81 ~~dvViIDEaqfl 93 (191)
T 1xx6_A 81 DTEVIAIDEVQFF 93 (191)
T ss_dssp TCSEEEECSGGGS
T ss_pred cCCEEEEECCCCC
Confidence 4789999999885
No 293
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=35.92 E-value=1.5e+02 Score=22.95 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=76.7
Q ss_pred hcCCcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhc------CCCHH-HHHH-HHhhccCCceEEEEeecCChhH
Q psy7789 32 KKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD------MGFEE-DVRT-IFSFFRGQRQTLLFSATMPKKI 103 (197)
Q Consensus 32 ~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~------~~~~~-~i~~-i~~~~~~~~q~i~~SAT~~~~~ 103 (197)
.+++|+||++.....+.+.+-.-...++.++++|..-...+ ..+.. .+.- +-..+.+..++.++++.-.+.+
T Consensus 84 ~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v 163 (356)
T 3s99_A 84 RAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEV 163 (356)
T ss_dssp HTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHH
T ss_pred HCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEeccccCCcEEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHH
Confidence 56899999998777766644333345677888875321100 00111 1111 1123444556667766555555
Q ss_pred HHHHHHhcCCCeEEEeCCCCccCcceeEEEEEcC---chhhHHHHH-HHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 104 QNFARSALVKPITINVGRAGAASMNVVQEVEYVK---QEAKIVYLL-ECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 104 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~-~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
......|..-. ....+.+.....+.. ...|-..+. .++.. +..+||+..... -+.+..++.|..
T Consensus 164 ~~~~~GF~~G~--------k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~--G~DvIf~~~d~~--Gv~~aa~e~Gv~ 231 (356)
T 3s99_A 164 VQGINSFMLGA--------QSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQ--GVDIITQHTDST--AAIQVAHDRGIK 231 (356)
T ss_dssp HHHHHHHHHHH--------HTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHT--TCSEEEESSSSS--HHHHHHHHTTCE
T ss_pred HHHHHHHHHHH--------HHHCCCCEEEEEECCCCCChHHHHHHHHHHHhC--CCcEEEECCCch--HHHHHHHHcCCE
Confidence 55555554210 011122333333343 223433333 33333 457888866554 566777888988
Q ss_pred eEeecCCCCh
Q psy7789 180 FFTLKSLKED 189 (197)
Q Consensus 180 ~~~~h~~~~~ 189 (197)
+..+.++++.
T Consensus 232 vIG~D~dq~~ 241 (356)
T 3s99_A 232 AFGQASDMIK 241 (356)
T ss_dssp EEEEESCCGG
T ss_pred EEEEcCchhh
Confidence 8888887654
No 294
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=35.79 E-value=20 Score=24.59 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=25.8
Q ss_pred CCEEE--Eec-ccccHHHHHHHHHh----------CCC-CeEeecCCCCh
Q psy7789 154 PPVLI--FAE-KKQDVDAIHEYLLL----------KGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lI--F~~-s~~~~~~l~~~L~~----------~~~-~~~~~h~~~~~ 189 (197)
.+++| ||. +-.++...+..|++ .|+ ++..+.||+..
T Consensus 90 ~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~ 139 (175)
T 2a2k_A 90 KRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKE 139 (175)
T ss_dssp CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHH
T ss_pred CCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHH
Confidence 35544 487 77778888888875 387 68888888753
No 295
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=35.70 E-value=44 Score=25.71 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=30.4
Q ss_pred CEEEEeccc------------ccHHHHHHHHHhCCCCeEeecCCCChhhhhh
Q psy7789 155 PVLIFAEKK------------QDVDAIHEYLLLKGKPFFTLKSLKEDQNNQT 194 (197)
Q Consensus 155 ~~lIF~~s~------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~ 194 (197)
-+|||.|.. .+++.|++.|++.|++|. ++.+++.++-.+
T Consensus 63 ~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~ 113 (316)
T 2fp3_A 63 VLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFK 113 (316)
T ss_dssp EEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHH
T ss_pred EEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHH
Confidence 489988763 789999999999999875 566777766443
No 296
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=35.70 E-value=67 Score=18.75 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=14.8
Q ss_pred ccccHHHHHHHHHhCCCCeEeec
Q psy7789 162 KKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 162 s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
+.-.|.....+|.+.|++...+.
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~id 35 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFIN 35 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCccHHHHHHHHHHcCCCEEEEE
Confidence 45567777777777776654444
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=35.66 E-value=35 Score=27.53 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=38.9
Q ss_pred CCccEEEeehhhhhh---cCCCHHHHHHHHhhccCCceEEEEeecCChhHHHHHHHhc
Q psy7789 57 DVCRYLCLDEADRMV---DMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSAL 111 (197)
Q Consensus 57 ~~l~~vViDEad~l~---~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 111 (197)
.+.+++++|++-++. +..+...+..+.....++.-+++++|+...+....+..+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 478899999998654 2335667777777776666778888987666666665554
No 298
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=35.17 E-value=39 Score=26.78 Aligned_cols=39 Identities=5% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhcc--CCceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFR--GQRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~--~~~q~i~~SA 97 (197)
.+.+++++||+|.+-+ +.+.+..+...+. .+++++++|.
T Consensus 272 ~~~~~viiDE~a~~~~--~~el~~al~~~ls~~~~~kiiiiST 312 (385)
T 2o0j_A 272 NSFAMIYIEDCAFIPN--FHDSWLAIQPVISSGRRSKIIITTT 312 (385)
T ss_dssp SCCSEEEEESGGGSTT--HHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred CCCCEEEechhhhcCC--CHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 3456999999998753 1344444443332 3456655544
No 299
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=34.89 E-value=47 Score=23.62 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=40.5
Q ss_pred eEEEEEcCCC--hH-HhHHH----HhcCCcEEEeCch---HH----HHHHh--------cCCc----cCCCccEEEeehh
Q psy7789 14 RTCLAIGGVP--MN-QSLDV----IKKGCHMMVATPG---RL----MDMLD--------KKMV----SLDVCRYLCLDEA 67 (197)
Q Consensus 14 ~~~~~~gg~~--~~-~~~~~----l~~~~~Ili~TP~---~l----~~~l~--------~~~~----~l~~l~~vViDEa 67 (197)
+...++|+.. .. ...+. ...+..+++-||+ +. .+.+. .... ...++++|+|||+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEa 100 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 100 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEch
Confidence 4567788754 22 22222 2346889999988 32 11111 0100 1356789999999
Q ss_pred hhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 68 DRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 68 d~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
.-+ .. ..+.+..+. ..+.|+++.
T Consensus 101 QFf-k~-~ve~~~~L~---~~gk~VI~~ 123 (195)
T 1w4r_A 101 QFF-PD-IVEFCEAMA---NAGKTVIVA 123 (195)
T ss_dssp GGC-TT-HHHHHHHHH---HTTCEEEEE
T ss_pred hhh-HH-HHHHHHHHH---HCCCeEEEE
Confidence 988 33 233332222 235566543
No 300
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=34.80 E-value=39 Score=23.22 Aligned_cols=28 Identities=7% Similarity=-0.175 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 163 KQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
..+++.|.+.|+..|+.+. ++.+++.++
T Consensus 54 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~e 81 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIK-PHDDCTVEQ 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHH
Confidence 5677778888888888765 445555554
No 301
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=34.54 E-value=51 Score=23.76 Aligned_cols=38 Identities=5% Similarity=-0.192 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 169 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (275)
T 3d8u_A 169 AEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLK 206 (275)
T ss_dssp HHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34566677766667899999999999999999998864
No 302
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=33.78 E-value=30 Score=28.44 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
..+.++|+|||+.+-+ .+-.....+++.+ ..|+++.+-
T Consensus 413 ~~~rlvvlDEA~kmD~-~~~~~~~~l~~~l--glQliiatP 450 (483)
T 3euj_A 413 LPCRLLFLDQAARLDA-MSINTLFELCERL--DMQLLIAAP 450 (483)
T ss_dssp CCCCEEEESSGGGSCH-HHHHHHHHHHHHT--TCEEEEEES
T ss_pred CceeEEEEeccccCCH-HHHHHHHHHHHHc--CCEEEEECc
Confidence 5899999999965522 2333334444443 789886543
No 303
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=33.59 E-value=44 Score=30.04 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=40.6
Q ss_pred CchhhHHHHHHH-hhc-CCCCEEEEecccccHHHHHHHH----HhCCCCeEeecCCCChhhhhhh
Q psy7789 137 KQEAKIVYLLEC-LQK-TEPPVLIFAEKKQDVDAIHEYL----LLKGKPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 137 ~~~~k~~~l~~~-l~~-~~~~~lIF~~s~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~R~~i 195 (197)
.+...+...+.+ +.. .+.+++|-++|+.=|...++.+ ...|+++..+.|+++.++|...
T Consensus 102 GeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~a 166 (997)
T 2ipc_A 102 GEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKA 166 (997)
T ss_dssp THHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH
Confidence 344444444444 232 3458999999987666655554 5569999999999998887654
No 304
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=33.40 E-value=46 Score=25.49 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+.-|||.+...+..+.+.|++.|++
T Consensus 256 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~ 293 (366)
T 3h5t_A 256 FEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKS 293 (366)
T ss_dssp HHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 44566677777678999999999999999999999874
No 305
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=33.14 E-value=50 Score=24.86 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 230 ~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 230 AEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp HHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 45566677766678999999999999999999999864
No 306
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=33.04 E-value=76 Score=20.24 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=14.3
Q ss_pred cccccHHHHHHHHHhCCCCeEeec
Q psy7789 161 EKKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 161 ~s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
++...|.....+|.++|+....+.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~d 31 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHN 31 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEe
Confidence 445666666666666666554443
No 307
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=33.02 E-value=60 Score=23.52 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHhhc-CCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~-~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++++. .+.+..|||.+...+..+.+.|++.|++
T Consensus 164 ~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 202 (277)
T 3cs3_A 164 YAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQ 202 (277)
T ss_dssp HHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCC
Confidence 3456667776 5668999999999999999999999875
No 308
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=32.99 E-value=14 Score=15.54 Aligned_cols=9 Identities=11% Similarity=0.626 Sum_probs=6.6
Q ss_pred EEEEecccc
Q psy7789 156 VLIFAEKKQ 164 (197)
Q Consensus 156 ~lIF~~s~~ 164 (197)
-|||||.+.
T Consensus 7 piiycnrrt 15 (21)
T 8tfv_A 7 PIIYCNRRT 15 (26)
T ss_dssp CCEEEEGGG
T ss_pred cEEEEcCcc
Confidence 488998764
No 309
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=32.96 E-value=50 Score=24.20 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 183 ~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~ 220 (289)
T 2fep_A 183 LEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp HHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 45566677766667899999999999999999998864
No 310
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=32.80 E-value=57 Score=24.79 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+.-|||.+...+..+.+.|++.|++
T Consensus 226 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~ 263 (349)
T 1jye_A 226 FQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLR 263 (349)
T ss_dssp HHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 44556677766668899999999999999999999875
No 311
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=32.70 E-value=40 Score=25.27 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.9
Q ss_pred CEEEEecc-------------cccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 155 PVLIFAEK-------------KQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 155 ~~lIF~~s-------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
-+|||.|. ..+++.|++.|++.|++|. ++.+++.++-
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em 83 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEI 83 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHH
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHH
Confidence 36777764 5678888888888888875 4455665553
No 312
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=32.65 E-value=59 Score=23.41 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.+++.|++
T Consensus 168 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 205 (276)
T 2h0a_A 168 RLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLT 205 (276)
T ss_dssp HHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 34566677766668899999999999999999999875
No 313
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=32.55 E-value=59 Score=23.73 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=30.7
Q ss_pred HHHHHHHhh-cCC-CCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQ-KTE-PPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~-~~~-~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++. ..+ .+..|||.+...+..+.+.|++.|++
T Consensus 174 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 174 RAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLT 213 (287)
T ss_dssp HHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 455667777 666 67899999999999999999999875
No 314
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=32.41 E-value=46 Score=25.15 Aligned_cols=38 Identities=11% Similarity=-0.097 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+.-|||.+...+..+...|++.|++
T Consensus 227 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~ 264 (339)
T 3h5o_A 227 ADMLDRALAERPDCDALFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp HHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 45566677777678899999999999999999999864
No 315
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=32.39 E-value=49 Score=25.02 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+.-|||.+...+..+.+.|++.|++
T Consensus 235 ~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~g~~ 272 (344)
T 3kjx_A 235 REMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp HHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 45566777777678999999999999999999999864
No 316
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=32.36 E-value=1.5e+02 Score=21.66 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK 178 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~ 178 (197)
-...+.+++...+.+..|||.+...+..+.+.|++.|+
T Consensus 174 ~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 174 SRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp HHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCC
Confidence 34566677777777899999999999999999999987
No 317
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=32.21 E-value=1.1e+02 Score=23.55 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=31.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 191 (197)
+.+++|.++++.-++.+++.+++. +.++..++|+....+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 131 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRD 131 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHH
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH
Confidence 347999999999998888877654 678889999887654
No 318
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=32.13 E-value=1e+02 Score=23.19 Aligned_cols=39 Identities=8% Similarity=-0.039 Sum_probs=31.5
Q ss_pred CCCEEEEecccccHHHHHHHHHh----CCCCeEeecCCCChhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLL----KGKPFFTLKSLKEDQN 191 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~ 191 (197)
+.++||.++++.-++.+++.+++ .+..+..++|+.+..+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 116 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHH
Confidence 45899999999988888888876 3678888999887654
No 319
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=31.82 E-value=46 Score=25.04 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=26.5
Q ss_pred CEEEEeccc--------------ccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 155 PVLIFAEKK--------------QDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 155 ~~lIF~~s~--------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
-+|||+|.. .+++.|.+.|++.|++|. .+.+++.++-.
T Consensus 23 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~ 74 (278)
T 3od5_A 23 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELL 74 (278)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHH
T ss_pred EEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHH
Confidence 478877752 578888888888888866 44566666543
No 320
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=31.72 E-value=36 Score=25.29 Aligned_cols=28 Identities=7% Similarity=-0.058 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 163 KQDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
..+++.|++.|++.|+++. .+.+++.++
T Consensus 43 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~e 70 (259)
T 3sir_A 43 NVDCENLTRVLKQLDFEVT-VYKDCRYKD 70 (259)
T ss_dssp CCHHHHHHHHHHHTTCEEE-EEEECSHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHH
Confidence 3677788888888887765 444555555
No 321
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=31.10 E-value=45 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=27.2
Q ss_pred CEEEEeccc--------------ccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 155 PVLIFAEKK--------------QDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 155 ~~lIF~~s~--------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
-+|||.|.. .+++.|.+.|++.|+.+. ++.+++.++-.
T Consensus 35 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~ 86 (167)
T 1pyo_A 35 LALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQ 86 (167)
T ss_dssp EEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHH
T ss_pred EEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHH
Confidence 478888762 378889999999998875 45566665533
No 322
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=31.05 E-value=38 Score=24.70 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 166 ~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 203 (277)
T 3hs3_A 166 YISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRRNLK 203 (277)
T ss_dssp HHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 56667777766668899999999999999999999864
No 323
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=30.70 E-value=1.2e+02 Score=23.29 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=32.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCChhhh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKEDQNN 192 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~R 192 (197)
+.++||.++++.-+..+++.+++. +..+..++|+.+..+.
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 148 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGED 148 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH
Confidence 458999999999999998888654 5788889998876654
No 324
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=30.61 E-value=55 Score=23.97 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++++..+.+..|||.+...+..+.+.|++.|++
T Consensus 177 ~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~ 214 (290)
T 2rgy_A 177 YAATCQLLESKAPFTGLFCANDTMAVSALARFQQLGIS 214 (290)
T ss_dssp HHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 34556667666667899999999999999999998864
No 325
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.59 E-value=49 Score=24.17 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 174 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 174 RDGAIKVLTGADRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHHTC-CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 45566777766678899999999999999999998864
No 326
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=30.46 E-value=76 Score=17.84 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=10.2
Q ss_pred cccHHHHHHHHHhCCCCeEee
Q psy7789 163 KQDVDAIHEYLLLKGKPFFTL 183 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~ 183 (197)
.-.|..+...|.+.|++...+
T Consensus 11 C~~C~~~~~~l~~~~i~~~~~ 31 (82)
T 1fov_A 11 CPYCHRAKALLSSKGVSFQEL 31 (82)
T ss_dssp CHHHHHHHHHHHHHTCCCEEE
T ss_pred ChhHHHHHHHHHHCCCCcEEE
Confidence 445555555555555444333
No 327
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=30.44 E-value=31 Score=24.69 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=23.2
Q ss_pred CCEEEEecccccHHHHHHHHHhCC--CCeEeecCCCChhhhhhh
Q psy7789 154 PPVLIFAEKKQDVDAIHEYLLLKG--KPFFTLKSLKEDQNNQTL 195 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~R~~i 195 (197)
+++.|++++-+++++..+.|.+.+ -++.++. .++++++|
T Consensus 27 ~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i 67 (197)
T 3gr0_A 27 KMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRI 67 (197)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHH
T ss_pred CcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHH
Confidence 457777777777777777776554 2344443 44444444
No 328
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=30.42 E-value=1.3e+02 Score=21.68 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC-CeEeecCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTLKSL 186 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~h~~ 186 (197)
...+.++++..+.+..|||.+...+..+.+.|++.|+ ++..+--+
T Consensus 179 ~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d 224 (290)
T 2fn9_A 179 YKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFD 224 (290)
T ss_dssp HHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCB
T ss_pred HHHHHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeC
Confidence 3456666776666788999999999999999999886 44444333
No 329
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.41 E-value=48 Score=23.83 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=7.8
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
-..+++||+|.+..
T Consensus 99 ~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 99 PCIVYIDEIDAVGK 112 (262)
T ss_dssp SEEEEEECC-----
T ss_pred CeEEEEeCcchhhc
Confidence 46899999999853
No 330
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=30.37 E-value=57 Score=24.08 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=30.8
Q ss_pred HHHHHHH-----hhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLEC-----LQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~-----l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++ +...+.+.-|||.+...+..+.+.|++.|++
T Consensus 180 ~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 180 SAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp HHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 4456666 7766678999999999999999999999864
No 331
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=30.24 E-value=28 Score=24.72 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=38.9
Q ss_pred cCCcEEEeCchHHHHHHhc-----------------CCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEE
Q psy7789 33 KGCHMMVATPGRLMDMLDK-----------------KMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLF 95 (197)
Q Consensus 33 ~~~~Ili~TP~~l~~~l~~-----------------~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~ 95 (197)
.|.+|.+-+|..-....-. ....|..=+.+|||||-.|.- .+-+.-+-+...++.|++++
T Consensus 79 ~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~~~tp~s~lIVD~AekLS~---kE~~~Lld~A~~~naqvvll 155 (189)
T 2l8b_A 79 QGREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSL---KETLTLLDGAARHNVQVLIT 155 (189)
T ss_dssp TTCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSCCCCCCCEEEEEESSSHHH---HHHHHHHHHHHHTTCCEEEE
T ss_pred cCeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCCCCCCCCEEEEechhhcCH---HHHHHHHHHHHhcCCEEEEe
Confidence 4789999999877754311 111134445899999998832 22222222333467898888
Q ss_pred eec
Q psy7789 96 SAT 98 (197)
Q Consensus 96 SAT 98 (197)
-.+
T Consensus 156 ~~~ 158 (189)
T 2l8b_A 156 DSG 158 (189)
T ss_dssp ESS
T ss_pred CCc
Confidence 665
No 332
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=30.05 E-value=29 Score=27.69 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccC-CceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-QRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-~~q~i~~SA 97 (197)
....++++||...-++......+..++..+.. ..|+++.|.
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th 395 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 395 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 56789999999988887666777777766543 568777765
No 333
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=30.00 E-value=51 Score=25.46 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.4
Q ss_pred CccEEEeehhhhhhc
Q psy7789 58 VCRYLCLDEADRMVD 72 (197)
Q Consensus 58 ~l~~vViDEad~l~~ 72 (197)
.-..|+|||+|.+..
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 456899999999965
No 334
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=29.95 E-value=13 Score=24.93 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCEEEEecccccHHHH------HHHHH--hCCC-CeEeecCCCCh
Q psy7789 154 PPVLIFAEKKQDVDAI------HEYLL--LKGK-PFFTLKSLKED 189 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l------~~~L~--~~~~-~~~~~h~~~~~ 189 (197)
.++++||.+-.++... +..|+ ..|+ ++..+.||+..
T Consensus 79 ~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~ 123 (153)
T 2vsw_A 79 QKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAE 123 (153)
T ss_dssp SEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHH
T ss_pred CeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHH
Confidence 4799999775444322 34444 3376 68889998754
No 335
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=29.87 E-value=61 Score=24.42 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 226 ~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 263 (340)
T 1qpz_A 226 YRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLR 263 (340)
T ss_dssp HHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 34566677766668899999999999999999998864
No 336
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=29.82 E-value=60 Score=24.36 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 227 ~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 227 IEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 34566677766668899999999999999999999875
No 337
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=29.73 E-value=62 Score=23.57 Aligned_cols=38 Identities=21% Similarity=0.087 Sum_probs=29.9
Q ss_pred HHHHHH--HhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLE--CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~--~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+ ++...+.+..|||.+...+..+.+.|++.|++
T Consensus 170 ~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 209 (285)
T 3c3k_A 170 AGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp HHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHHHcCCC
Confidence 345556 67766667889999999999999999998864
No 338
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=29.72 E-value=66 Score=20.64 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=14.9
Q ss_pred EEEe-cccccHHHHHHHHHhCCCCeEeec
Q psy7789 157 LIFA-EKKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 157 lIF~-~s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
.||. ++...|.....+|.++|+....+.
T Consensus 8 ~iY~~p~C~~c~ka~~~L~~~gi~~~~~d 36 (121)
T 3rdw_A 8 TIYHNPRCSKSRETLALVEQQGITPQVVL 36 (121)
T ss_dssp EEECCTTCHHHHHHHHHHHTTTCCCEEEC
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEe
Confidence 3443 445566666666666665544433
No 339
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=29.58 E-value=41 Score=24.49 Aligned_cols=15 Identities=27% Similarity=0.014 Sum_probs=12.0
Q ss_pred CccEEEeehhhhhhc
Q psy7789 58 VCRYLCLDEADRMVD 72 (197)
Q Consensus 58 ~l~~vViDEad~l~~ 72 (197)
+-..+++||+|.+..
T Consensus 100 ~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 100 DGGTLFLDELATAPM 114 (265)
T ss_dssp TTSEEEEESGGGSCH
T ss_pred CCcEEEEechHhcCH
Confidence 346999999999854
No 340
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.58 E-value=73 Score=26.08 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=25.1
Q ss_pred CCccEEEeehhhhhhcCC--CHHHHHHHHhhccCCceEEEEeecC
Q psy7789 57 DVCRYLCLDEADRMVDMG--FEEDVRTIFSFFRGQRQTLLFSATM 99 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~--~~~~i~~i~~~~~~~~q~i~~SAT~ 99 (197)
..-..++|||+|.+.... ....+..+++. ....+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345689999999997532 22344444443 244577776664
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.49 E-value=24 Score=28.60 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=12.5
Q ss_pred CCCccEEEeehhhhhhc
Q psy7789 56 LDVCRYLCLDEADRMVD 72 (197)
Q Consensus 56 l~~l~~vViDEad~l~~ 72 (197)
...-..++|||+|.+..
T Consensus 104 ~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNK 120 (447)
T ss_dssp TTCCEEEEEETTTCC--
T ss_pred cCCCcEEEEeChhhhCH
Confidence 34567999999999854
No 342
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=29.33 E-value=44 Score=30.63 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeec
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
+..|.+.++...++++|.|.|...++.+.+.|.+.|+++..+|
T Consensus 374 ~~~L~~~~~~~~grVli~~~s~~~~erL~~~L~e~gi~~~~~~ 416 (1151)
T 2eyq_A 374 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIM 416 (1151)
T ss_dssp THHHHHHHTTCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECS
T ss_pred HHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCceecc
Confidence 5667777765212999999999999999999999998775554
No 343
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=29.33 E-value=94 Score=25.42 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=39.5
Q ss_pred eEEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC
Q psy7789 130 VQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 130 ~~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~ 176 (197)
.+.+..+....|...+-.+.+..++++||.|++...|..+++.|+..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred eEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 44556677788888888888877789999999999999999999865
No 344
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=29.20 E-value=58 Score=24.89 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=10.5
Q ss_pred cEEEeehhhhhh
Q psy7789 60 RYLCLDEADRMV 71 (197)
Q Consensus 60 ~~vViDEad~l~ 71 (197)
..++|||+|.+.
T Consensus 191 ~vl~IDEi~~l~ 202 (368)
T 3uk6_A 191 GVLFIDEVHMLD 202 (368)
T ss_dssp CEEEEESGGGSB
T ss_pred ceEEEhhccccC
Confidence 499999999984
No 345
>3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica}
Probab=29.19 E-value=92 Score=23.19 Aligned_cols=54 Identities=4% Similarity=-0.141 Sum_probs=39.9
Q ss_pred EEEcC-chhh-HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCCh
Q psy7789 133 VEYVK-QEAK-IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKED 189 (197)
Q Consensus 133 ~~~~~-~~~k-~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 189 (197)
-..+. .++. ...++++|++.+-|+-.|+.... ..+.+.+.+.|+.++. |+.+.+
T Consensus 42 TFDi~Wg~~~~iprILdiL~~~~VkATFFv~G~~--p~i~k~I~~~GHEIG~-H~~~~~ 97 (257)
T 3hft_A 42 TFDIDWAADFVLQDTIDLIEGAGVCATWFATHST--PLLENIRRNPLFELGV-HPNFNP 97 (257)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTCCEEEEECSCC--THHHHHHHCTTEEEEE-CCCCHH
T ss_pred EEECCCcchhhHHHHHHHHHHcCCCeEEEecCCC--HHHHHHHHHCCcEEEe-CCCccc
Confidence 33444 3445 58999999999888888887764 2566667788999887 988755
No 346
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=28.95 E-value=58 Score=23.98 Aligned_cols=27 Identities=11% Similarity=-0.085 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 164 QDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.+++.|++.|++.|+++. .+.+++.++
T Consensus 41 ~D~~~l~~~f~~LgF~V~-~~~dlt~~e 67 (250)
T 2j32_A 41 VDAANLRETFRNLKYEVR-NKNDLTREE 67 (250)
T ss_dssp HHHHHHHHHHHHTTCEEE-EEESCCHHH
T ss_pred HHHHHHHHHHHHCCCEEE-EEeCCCHHH
Confidence 466666677776676654 334444444
No 347
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=28.90 E-value=85 Score=23.13 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=12.9
Q ss_pred CccEEEeehhhhhhcC
Q psy7789 58 VCRYLCLDEADRMVDM 73 (197)
Q Consensus 58 ~l~~vViDEad~l~~~ 73 (197)
.-..+++||+|.+...
T Consensus 113 ~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CSEEEEEETGGGTSBC
T ss_pred CCcEEEeccHHHhccc
Confidence 4468999999999753
No 348
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=28.70 E-value=21 Score=30.32 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred CcEEEeCchHHHHHHhcCCccCCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEe
Q psy7789 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFS 96 (197)
Q Consensus 35 ~~Ili~TP~~l~~~l~~~~~~l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~S 96 (197)
++++++|.-.....-....+.-...+++|||||-...+. .++-.+....+++++.
T Consensus 343 ~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~-------~~lipL~~~~~~ILVG 397 (646)
T 4b3f_X 343 ANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEA-------SCWIPLLKARKCILAG 397 (646)
T ss_dssp CSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHH-------HHTTTGGGSSEEEEEE
T ss_pred cceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchH-------HHHhhccccceEEEcC
No 349
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=28.66 E-value=69 Score=23.23 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 175 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 212 (289)
T 1dbq_A 175 YRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLR 212 (289)
T ss_dssp HHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 34556667666667889999999999999999998864
No 350
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=28.37 E-value=47 Score=25.29 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+...|++.|++
T Consensus 238 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~ 275 (355)
T 3e3m_A 238 VAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSIGVA 275 (355)
T ss_dssp HHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 45566677777778899999999999999999988864
No 351
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=28.30 E-value=52 Score=25.24 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=27.2
Q ss_pred CEEEEecc-------------cccHHHHHHHHHhCCCCeEeecCCCChhhhh
Q psy7789 155 PVLIFAEK-------------KQDVDAIHEYLLLKGKPFFTLKSLKEDQNNQ 193 (197)
Q Consensus 155 ~~lIF~~s-------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~ 193 (197)
-+|||.|. ..+++.|++.|++.|++|. ++.+++.++-.
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~ 112 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEIN 112 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHH
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHH
Confidence 47888765 5778888888888898875 44566665533
No 352
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=28.15 E-value=73 Score=24.61 Aligned_cols=15 Identities=13% Similarity=0.281 Sum_probs=12.3
Q ss_pred CccEEEeehhhhhhc
Q psy7789 58 VCRYLCLDEADRMVD 72 (197)
Q Consensus 58 ~l~~vViDEad~l~~ 72 (197)
.-..|+|||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 456899999999864
No 353
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=28.10 E-value=54 Score=24.82 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=30.4
Q ss_pred eeEEEEEcCCC--hHHhH-----HHH-hcCCcEEEeCchHHHHHHhcC---------CccCCCccEEEeehhhhh
Q psy7789 13 LRTCLAIGGVP--MNQSL-----DVI-KKGCHMMVATPGRLMDMLDKK---------MVSLDVCRYLCLDEADRM 70 (197)
Q Consensus 13 i~~~~~~gg~~--~~~~~-----~~l-~~~~~Ili~TP~~l~~~l~~~---------~~~l~~l~~vViDEad~l 70 (197)
-+..+++|... ...-. ... ..+..+++.+...+..-+... .-.+.+.++||+||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 35677888643 22222 112 345677655544444433221 011356789999999654
No 354
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.09 E-value=50 Score=23.90 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=31.3
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
-...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 163 ~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 201 (280)
T 3gyb_A 163 GYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLR 201 (280)
T ss_dssp HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 345666777777778899999999999999999988764
No 355
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=27.92 E-value=1.2e+02 Score=22.23 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.6
Q ss_pred ccEEEeehhhhhhcC
Q psy7789 59 CRYLCLDEADRMVDM 73 (197)
Q Consensus 59 l~~vViDEad~l~~~ 73 (197)
-..+++||+|.+...
T Consensus 117 ~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 117 NGIVFIDEIDKICKK 131 (310)
T ss_dssp HCEEEEECGGGGSCC
T ss_pred CCEEEEEChhhcCcc
Confidence 569999999999754
No 356
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=27.86 E-value=43 Score=25.14 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=24.0
Q ss_pred ccEEEeehhhhhhcC---------C-C---HHHHHHHHhhccCCceEEEEeecCCh
Q psy7789 59 CRYLCLDEADRMVDM---------G-F---EEDVRTIFSFFRGQRQTLLFSATMPK 101 (197)
Q Consensus 59 l~~vViDEad~l~~~---------~-~---~~~i~~i~~~~~~~~q~i~~SAT~~~ 101 (197)
-..+++||+|.+... + . ...+...+..+.....++++.||-.+
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 468999999988531 0 1 12333334433344556666666443
No 357
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=27.82 E-value=44 Score=25.77 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcc-CCceEEEEeecCChhHHHHHHH----hcCCCeE-EEeC----CCC-------------------ccC
Q psy7789 76 EEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARS----ALVKPIT-INVG----RAG-------------------AAS 126 (197)
Q Consensus 76 ~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~----~~~~~~~-i~~~----~~~-------------------~~~ 126 (197)
.+.+..+++.+. +..++.++|||...-++-++.. |.-+|.. +-+. ... ...
T Consensus 145 ~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG~~~~~~~~~~~~~~~~~~~~~dg~y~~~~~~ 224 (327)
T 4as2_A 145 FSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANL 224 (327)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEEECEEEECTTTCCEECHHHHHHTTCCCGGGGT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEeeeeeeeccccccccccccccccccccccccc
Confidence 445556666664 4678999999987667777765 2333322 2111 000 000
Q ss_pred cceeEEEE---EcCchhhHHHHHHHhhcCCCCEEEEecc-cccHHHHHHHHHhCCCCeE
Q psy7789 127 MNVVQEVE---YVKQEAKIVYLLECLQKTEPPVLIFAEK-KQDVDAIHEYLLLKGKPFF 181 (197)
Q Consensus 127 ~~i~~~~~---~~~~~~k~~~l~~~l~~~~~~~lIF~~s-~~~~~~l~~~L~~~~~~~~ 181 (197)
+....-.. .+..+.|...+...+...+.|+++|=|| ..+...|......-|+...
T Consensus 225 ~~~~~~~~~~p~~~~~GK~~~I~~~i~~g~~Pi~a~Gns~dgD~~ML~~~~~~~~~~L~ 283 (327)
T 4as2_A 225 DLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLW 283 (327)
T ss_dssp TCEEEEEECSSCSSTHHHHHHHHHHTCSSCCCSEEEESCHHHHHHHHHHTSCTTCEEEE
T ss_pred cccccccccccccccCccHHHHHHHHhhCCCCeEEecCCCCCCHHHHhccccCCCeEEE
Confidence 00111111 1235779999999997777899999999 5677777544444454433
No 358
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=27.71 E-value=62 Score=26.00 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=15.3
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhc
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFF 86 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~ 86 (197)
+.++|||+|.+- .+....+++.+
T Consensus 297 ~VliIDEa~~l~----~~a~~aLlk~l 319 (456)
T 2c9o_A 297 GVLFVDEVHMLD----IECFTYLHRAL 319 (456)
T ss_dssp CEEEEESGGGCB----HHHHHHHHHHT
T ss_pred eEEEEechhhcC----HHHHHHHHHHh
Confidence 589999999984 33344444444
No 359
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=27.49 E-value=50 Score=24.97 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.3
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
-..+++||+|.+..
T Consensus 145 ~~vl~iDEi~~l~~ 158 (350)
T 1g8p_A 145 RGYLYIDECNLLED 158 (350)
T ss_dssp TEEEEETTGGGSCH
T ss_pred CCEEEEeChhhCCH
Confidence 45899999999843
No 360
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=27.31 E-value=40 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=28.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhC----CCCeEeecCCCCh
Q psy7789 153 EPPVLIFAEKKQDVDAIHEYLLLK----GKPFFTLKSLKED 189 (197)
Q Consensus 153 ~~~~lIF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~ 189 (197)
+.++||.++|+.-+..+++.+++. ++++..++|+...
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVA 138 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccH
Confidence 347999999999999998888764 6777777766443
No 361
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=27.28 E-value=78 Score=23.33 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=29.8
Q ss_pred HHHHHHHhhcC---CCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~---~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++++.. +.+..|||.+...+..+.+.|++.|++
T Consensus 176 ~~~~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 216 (306)
T 2vk2_A 176 KEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 216 (306)
T ss_dssp HHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCC
Confidence 34556667665 557899999999999999999999875
No 362
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=26.95 E-value=1.5e+02 Score=21.34 Aligned_cols=49 Identities=8% Similarity=-0.009 Sum_probs=22.6
Q ss_pred chhhHHHHHHHhhcCCCCEEEEeccc---ccHHHHHHHHHhC-CCCeEeecCC
Q psy7789 138 QEAKIVYLLECLQKTEPPVLIFAEKK---QDVDAIHEYLLLK-GKPFFTLKSL 186 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~~~~~lIF~~s~---~~~~~l~~~L~~~-~~~~~~~h~~ 186 (197)
..++...+.+.++..+.++..+.-.. +.++.+.+.+.+. ++.+.+..++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nAg 92 (252)
T 3h7a_A 40 NGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVG 92 (252)
T ss_dssp SGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECCC
Confidence 44555566666655554554444333 3333333333332 3444444444
No 363
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=26.95 E-value=1.5e+02 Score=21.71 Aligned_cols=50 Identities=6% Similarity=-0.003 Sum_probs=23.7
Q ss_pred chhhHHHHHHHhhcCCCCEEEEeccc---ccHHHHHHHHHhC--CCCeEeecCCC
Q psy7789 138 QEAKIVYLLECLQKTEPPVLIFAEKK---QDVDAIHEYLLLK--GKPFFTLKSLK 187 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~~~~~lIF~~s~---~~~~~l~~~L~~~--~~~~~~~h~~~ 187 (197)
..++...+.+.+...+.++..+.-.. ..++.+.+.+.+. ++++.+..++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 65 HSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp SGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 34455555555555544554444333 3334444433322 45665555543
No 364
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=26.72 E-value=71 Score=24.06 Aligned_cols=38 Identities=3% Similarity=-0.090 Sum_probs=31.5
Q ss_pred hHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 141 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 141 k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
-...+.+++...+ +.-|||.+...+..+.+.|++.|++
T Consensus 219 ~~~~~~~ll~~~~-~~ai~~~nd~~A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 219 GEEMAQVVFNNGL-PDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHHHHTCC-CSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC-CcEEEECCHHHHHHHHHHHHHcCCC
Confidence 3456677777777 8999999999999999999999864
No 365
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=26.69 E-value=54 Score=23.46 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=28.7
Q ss_pred CCCccEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEee
Q psy7789 56 LDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSA 97 (197)
Q Consensus 56 l~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 97 (197)
..+-+++++||.-.-++......+..+++.+......++++.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivt 190 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 566778999998888887777777777766643233444443
No 366
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.65 E-value=21 Score=29.31 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=29.7
Q ss_pred cEEEeehhhhhhcCCCHHHHHHHHhhccCCceEEEEeec
Q psy7789 60 RYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQTLLFSAT 98 (197)
Q Consensus 60 ~~vViDEad~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 98 (197)
+++|+||.+.=++......+..++..+....++++.|--
T Consensus 419 ~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~ 457 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 457 (517)
T ss_dssp SEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCC
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 899999999988877777777777776655666666553
No 367
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=26.06 E-value=63 Score=25.23 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=11.1
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
-..|+|||+|.+..
T Consensus 208 ~~il~iDEid~l~~ 221 (389)
T 3vfd_A 208 PSIIFIDQVDSLLC 221 (389)
T ss_dssp SEEEEEETGGGGC-
T ss_pred CeEEEEECchhhcc
Confidence 35899999999853
No 368
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=26.06 E-value=1e+02 Score=22.56 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=17.2
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhh
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSF 85 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~ 85 (197)
...++|++||+.-+.+ ..++..++..
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~ 114 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN 114 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh
Confidence 5678999999998742 4444444443
No 369
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.83 E-value=43 Score=24.78 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=25.4
Q ss_pred HHHHHH-hhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 143 VYLLEC-LQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 143 ~~l~~~-l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
..+.++ +...+.+.-|||.+...+..+.+.|++.|++
T Consensus 190 ~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 190 DFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp HHC--------CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 445555 6666678899999999999999999999864
No 370
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=25.72 E-value=60 Score=23.44 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=11.3
Q ss_pred CccEEEeehhhhh
Q psy7789 58 VCRYLCLDEADRM 70 (197)
Q Consensus 58 ~l~~vViDEad~l 70 (197)
..++|+|||+.-+
T Consensus 101 ~~dvViIDEaQF~ 113 (214)
T 2j9r_A 101 EMDVIAIDEVQFF 113 (214)
T ss_dssp SCCEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 4789999999875
No 371
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=25.46 E-value=1.5e+02 Score=20.96 Aligned_cols=51 Identities=2% Similarity=-0.065 Sum_probs=27.0
Q ss_pred CchhhHHHHHHHhhcCCCCEEEEeccc---ccHHHHHHHHHhC--CCCeEeecCCC
Q psy7789 137 KQEAKIVYLLECLQKTEPPVLIFAEKK---QDVDAIHEYLLLK--GKPFFTLKSLK 187 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~~~~~~lIF~~s~---~~~~~l~~~L~~~--~~~~~~~h~~~ 187 (197)
...++...+.+.++..+.++..+.-.. +.++.+.+.+.+. ++++.+..++.
T Consensus 37 r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 37 TSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 445566666666666655655554333 3344444444433 45666555554
No 372
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=25.39 E-value=1.5e+02 Score=21.42 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=25.9
Q ss_pred CchhhHHHHHHHhhcCCCCEEEEeccccc---HHHHHHHHHhC--CCCeEeecCCC
Q psy7789 137 KQEAKIVYLLECLQKTEPPVLIFAEKKQD---VDAIHEYLLLK--GKPFFTLKSLK 187 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~~~~~~lIF~~s~~~---~~~l~~~L~~~--~~~~~~~h~~~ 187 (197)
...++...+.+.+...+.++..+.-...+ ++.+.+.+.+. ++.+.+..++.
T Consensus 43 r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 43 RTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECCCS
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 34556666666666655566555433333 33343333322 45665555533
No 373
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=25.26 E-value=37 Score=24.19 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=28.0
Q ss_pred CCccEEEeehhhhhhc-----CCCHHHHHHHHhhccCCceEEEEeecCC
Q psy7789 57 DVCRYLCLDEADRMVD-----MGFEEDVRTIFSFFRGQRQTLLFSATMP 100 (197)
Q Consensus 57 ~~l~~vViDEad~l~~-----~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 100 (197)
.+.+.+++||.-..++ ......+..+++.+...-.++++++-..
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 5678999999988875 3344556677766644334555554443
No 374
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.25 E-value=1.3e+02 Score=18.63 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=38.9
Q ss_pred EEEcCchhhHHHHHHHhhcCCCCE--EEEecccccHHHHHHHHHhCCCCeEeecC
Q psy7789 133 VEYVKQEAKIVYLLECLQKTEPPV--LIFAEKKQDVDAIHEYLLLKGKPFFTLKS 185 (197)
Q Consensus 133 ~~~~~~~~k~~~l~~~l~~~~~~~--lIF~~s~~~~~~l~~~L~~~~~~~~~~h~ 185 (197)
...+...+....-..+.+..+.++ +||-....+.++.....+.+|+.+..+.+
T Consensus 55 vvvvddkewaekairfvkslgaqvliiiydqdqnrleefsrevrrrgfevrtvts 109 (134)
T 2l69_A 55 VVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTS 109 (134)
T ss_dssp EEECSSHHHHHHHHHHHHHHCCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred EEEEccHHHHHHHHHHHHhcCCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecC
Confidence 344555566666677777777774 56667788889999999999998877654
No 375
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=25.13 E-value=45 Score=29.06 Aligned_cols=47 Identities=19% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCeeEEEEEcCCChHHhHHHHhc---------CCcEEEeCchHHHHHHhcCCccCCCccEEE
Q psy7789 11 IPLRTCLAIGGVPMNQSLDVIKK---------GCHMMVATPGRLMDMLDKKMVSLDVCRYLC 63 (197)
Q Consensus 11 ~~i~~~~~~gg~~~~~~~~~l~~---------~~~Ili~TP~~l~~~l~~~~~~l~~l~~vV 63 (197)
.++.+..++|+.+..++.+.+.. ...|||||. .+. ..+++..+++||
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----iae-~GidIp~v~~VI 392 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IAE-TSLTIDGIVYVV 392 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HHH-HTCCCTTEEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HHH-hCcCcCCeEEEE
Confidence 47999999999987777655532 368999993 444 334567888776
No 376
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=25.12 E-value=51 Score=24.14 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.+++.|++
T Consensus 185 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 222 (293)
T 2iks_A 185 AQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGK 222 (293)
T ss_dssp HHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 34566677766667899999999999999999887654
No 377
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.06 E-value=76 Score=23.28 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=29.0
Q ss_pred HHHHHHHhhcC---CCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~---~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++... ..+..|||.+...+..+.+.|++.|++
T Consensus 177 ~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 217 (295)
T 3hcw_A 177 LNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIE 217 (295)
T ss_dssp HHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 34455555544 257899999999999999999999864
No 378
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=24.63 E-value=93 Score=22.49 Aligned_cols=38 Identities=8% Similarity=-0.094 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|++
T Consensus 178 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 178 YDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCCceEEEECCCcchHHHHHHHHhcCCC
Confidence 34566677766667899999999999999999998864
No 379
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=24.58 E-value=67 Score=20.81 Aligned_cols=30 Identities=7% Similarity=0.293 Sum_probs=16.2
Q ss_pred eeEEEEEcCCChHHhHHHHhcCCc-EEEeCc
Q psy7789 13 LRTCLAIGGVPMNQSLDVIKKGCH-MMVATP 42 (197)
Q Consensus 13 i~~~~~~gg~~~~~~~~~l~~~~~-Ili~TP 42 (197)
+.-.+.++|.+..++.+.+....+ |+|.|.
T Consensus 40 ~~~iI~t~Gtal~~~i~~l~~~~~~VIIltD 70 (118)
T 1t6t_1 40 IKNVIDLSGKRYADVVDMLEGKWEKVILLFD 70 (118)
T ss_dssp CCCEEECTTSCHHHHHHHHTTTCSEEEECCC
T ss_pred cCcEEEECCCcHHHHHHHHHhCCCEEEEEEC
Confidence 334555666665555555544455 666553
No 380
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=24.47 E-value=80 Score=23.00 Aligned_cols=37 Identities=11% Similarity=-0.141 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.++++ .+.+..|||.+...+..+.+.|++.|++
T Consensus 174 ~~~~~~~l~-~~~~~ai~~~~d~~a~g~~~al~~~g~~ 210 (290)
T 3clk_A 174 EQAMKAFGK-NTDLTGIIAASDMTAIGILNQASSFGIE 210 (290)
T ss_dssp HHHHHHHCT-TCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhc-cCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 345566676 5567889999999999999999998864
No 381
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=24.13 E-value=79 Score=23.74 Aligned_cols=28 Identities=11% Similarity=-0.115 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 164 QDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
.+++.|++.|++.|++|. ++.+++.++-
T Consensus 69 ~D~~~L~~~f~~LGF~V~-~~~dlt~~em 96 (277)
T 4ehd_A 69 VDAANLRETFRNLKYEVR-NKNDLTREEI 96 (277)
T ss_dssp HHHHHHHHHHHHTTCEEE-EEESCCHHHH
T ss_pred HHHHHHHHHHHHCCCEEE-EecCCCHHHH
Confidence 478888888888888865 4555665553
No 382
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=23.86 E-value=65 Score=23.41 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+..|||.+...+..+.+.+++.|++
T Consensus 188 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 225 (296)
T 3brq_A 188 AEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVA 225 (296)
T ss_dssp HHHHHHHHTC--CCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 34556667665567889999998899999999888764
No 383
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=23.82 E-value=65 Score=24.09 Aligned_cols=28 Identities=7% Similarity=-0.105 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 164 QDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
.+++.|++.|++.|++|. ++.+++.++-
T Consensus 46 ~D~~~L~~~f~~LgF~V~-~~~dlt~~em 73 (277)
T 1nw9_B 46 IDCEKLRRRFSSLHFMVE-VKGDLTAKKM 73 (277)
T ss_dssp HHHHHHHHHHHHTTEEEE-EEESCCHHHH
T ss_pred HHHHHHHHHHHHCCCEEE-EEcCCCHHHH
Confidence 377778888888887765 4455555553
No 384
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=23.72 E-value=1.8e+02 Score=23.63 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=10.3
Q ss_pred ccEEEeehhhhh
Q psy7789 59 CRYLCLDEADRM 70 (197)
Q Consensus 59 l~~vViDEad~l 70 (197)
.+.+|||||-.+
T Consensus 235 ~d~liiDE~sm~ 246 (446)
T 3vkw_A 235 FKRLFIDEGLML 246 (446)
T ss_dssp CSEEEEETGGGS
T ss_pred CCEEEEeCcccC
Confidence 789999999755
No 385
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.66 E-value=94 Score=22.90 Aligned_cols=46 Identities=9% Similarity=0.006 Sum_probs=34.9
Q ss_pred HHHHHHHhhcC-CCCEEEEecccccHHHHHHHHHhCCCC--eEeecCCC
Q psy7789 142 IVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGKP--FFTLKSLK 187 (197)
Q Consensus 142 ~~~l~~~l~~~-~~~~lIF~~s~~~~~~l~~~L~~~~~~--~~~~h~~~ 187 (197)
...+.+++... +.+..|||.+...+..+.+.|++.|++ +..+--+-
T Consensus 175 ~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vig~d~ 223 (313)
T 3m9w_A 175 LKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDA 223 (313)
T ss_dssp HHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCTTTSEECCCSC
T ss_pred HHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCCCCcEEEecCC
Confidence 45667777776 678899999999999999999999873 44443333
No 386
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.59 E-value=91 Score=18.40 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=25.5
Q ss_pred chhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCC
Q psy7789 138 QEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKE 188 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 188 (197)
...-...+...+...+-.+ ..+.+ .++....+.+..+.+..+.-.++
T Consensus 10 ~~~~~~~l~~~l~~~g~~v-~~~~~---~~~~~~~l~~~~~dlii~d~~~~ 56 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKV-IWLVD---GSTALDQLDLLQPIVILMAWPPP 56 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEE-EEESC---HHHHHHHHHHHCCSEEEEECSTT
T ss_pred CHHHHHHHHHHHHhCCcEE-EEecC---HHHHHHHHHhcCCCEEEEecCCC
Confidence 3444556666666554443 34443 34444455555677777766554
No 387
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=23.50 E-value=1.2e+02 Score=19.20 Aligned_cols=25 Identities=20% Similarity=0.029 Sum_probs=17.3
Q ss_pred cccccHHHHHHHHHhCCCCeEeecC
Q psy7789 161 EKKQDVDAIHEYLLLKGKPFFTLKS 185 (197)
Q Consensus 161 ~s~~~~~~l~~~L~~~~~~~~~~h~ 185 (197)
.+...+.+.++.|++.|+++..++-
T Consensus 23 s~~~~a~eA~~~L~~~Gi~v~vi~~ 47 (118)
T 3ju3_A 23 SQKGPILDVIEDLKEEGISANLLYL 47 (118)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccHHHHHHHHHHHHHCCCceEEEEE
Confidence 4566777777777777777776663
No 388
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=23.31 E-value=1e+02 Score=22.49 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
.....+++...+.+.-|||.+...|.-+.+.|++.|++
T Consensus 181 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~ 218 (288)
T 1gud_A 181 LDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKT 218 (288)
T ss_dssp HHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCC
Confidence 34556667766667899999999999999999998863
No 389
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.19 E-value=98 Score=22.51 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=32.6
Q ss_pred hhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC-CeEee
Q psy7789 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK-PFFTL 183 (197)
Q Consensus 140 ~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~-~~~~~ 183 (197)
.-...+.+++...+.+..|||.+.. +..+.+.|++.|+ ++..+
T Consensus 186 ~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vi 229 (304)
T 3gbv_A 186 EDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLI 229 (304)
T ss_dssp CHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEE
Confidence 3456677777777778889998888 9999999999986 44433
No 390
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=23.06 E-value=32 Score=23.81 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=10.9
Q ss_pred CCccEEEeehhhhh
Q psy7789 57 DVCRYLCLDEADRM 70 (197)
Q Consensus 57 ~~l~~vViDEad~l 70 (197)
...+++|+||++..
T Consensus 114 ~~~~~lilDei~~~ 127 (202)
T 2w58_A 114 KKVPVLMLDDLGAE 127 (202)
T ss_dssp HHSSEEEEEEECCC
T ss_pred cCCCEEEEcCCCCC
Confidence 34569999999765
No 391
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=22.77 E-value=38 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=25.9
Q ss_pred CcEEEe---CchHHHHHHhcCCccCCCccEEEeehh
Q psy7789 35 CHMMVA---TPGRLMDMLDKKMVSLDVCRYLCLDEA 67 (197)
Q Consensus 35 ~~Ili~---TP~~l~~~l~~~~~~l~~l~~vViDEa 67 (197)
+.|.++ ||..+...+....++.+++.++-+||-
T Consensus 36 ~~l~lsgGstp~~~y~~L~~~~i~w~~v~~f~~DEr 71 (232)
T 3lhi_A 36 AVLAVSGGRSPIAFFNALSQKDLDWKNVGITLADER 71 (232)
T ss_dssp EEEEECCSSTTHHHHHHHHTSCCCGGGEEEEESEEE
T ss_pred EEEEEeCCCCHHHHHHHHHhcCCCchheEEEEeeec
Confidence 445553 578888888777889999999999994
No 392
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=22.71 E-value=1.2e+02 Score=17.55 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHhCCCCeEee
Q psy7789 163 KQDVDAIHEYLLLKGKPFFTL 183 (197)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~~~ 183 (197)
...|..+...|.+.|++...+
T Consensus 16 C~~C~~~~~~L~~~~i~~~~~ 36 (92)
T 2khp_A 16 CPYCARAKALLARKGAEFNEI 36 (92)
T ss_dssp CHHHHHHHHHHHHTTCCCEEE
T ss_pred ChhHHHHHHHHHHcCCCcEEE
Confidence 445555555555554443333
No 393
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=22.68 E-value=88 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.312 Sum_probs=12.2
Q ss_pred CccEEEeehhhhhhc
Q psy7789 58 VCRYLCLDEADRMVD 72 (197)
Q Consensus 58 ~l~~vViDEad~l~~ 72 (197)
.-..++|||+|.+..
T Consensus 105 ~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCG 119 (322)
T ss_dssp SSEEEEEETTTGGGC
T ss_pred CCcEEEeecHHHhcc
Confidence 456899999999954
No 394
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=22.60 E-value=1.1e+02 Score=22.51 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=29.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhCCC----CeEeecCCCChh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLKGK----PFFTLKSLKEDQ 190 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~~~----~~~~~h~~~~~~ 190 (197)
..+++||.++++.-++..++.+++.+. .+..++|+.+..
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKD 198 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSST
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcch
Confidence 345899999999999999988887643 566777776553
No 395
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=22.57 E-value=1.3e+02 Score=22.15 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=23.9
Q ss_pred chhhHHHHHHHhhcCCCCEEEEec---ccccHHHHHHHHHhC--CCCeEeecCC
Q psy7789 138 QEAKIVYLLECLQKTEPPVLIFAE---KKQDVDAIHEYLLLK--GKPFFTLKSL 186 (197)
Q Consensus 138 ~~~k~~~l~~~l~~~~~~~lIF~~---s~~~~~~l~~~L~~~--~~~~~~~h~~ 186 (197)
.+++.+...+.++..+.++..+.- ..+.++.+.+...+. ++++.+-.++
T Consensus 42 ~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 42 RATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAG 95 (255)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 344555566666655555555542 234444444444443 3444444443
No 396
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.48 E-value=1.4e+02 Score=21.27 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=11.4
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
...+++||+|.+..
T Consensus 109 ~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 109 PCIVFIDEIDAVGR 122 (254)
T ss_dssp SEEEEEETHHHHHC
T ss_pred CeEEEehhhhhhhc
Confidence 46899999998853
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=22.43 E-value=90 Score=22.46 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=11.4
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
...+++||+|.+..
T Consensus 105 ~~il~iDeid~l~~ 118 (257)
T 1lv7_A 105 PCIIFIDEIDAVGR 118 (257)
T ss_dssp SEEEEETTHHHHTC
T ss_pred Ceeehhhhhhhhcc
Confidence 35899999999864
No 398
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=22.39 E-value=46 Score=23.19 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHhCCCCeEeecCCCChhh
Q psy7789 164 QDVDAIHEYLLLKGKPFFTLKSLKEDQN 191 (197)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 191 (197)
.+++.|.+.|++.|+.+.. |.+++.++
T Consensus 69 ~D~~~L~~~F~~LgF~V~v-~~dlt~~e 95 (173)
T 2ql9_A 69 KDAEALFKCFRSLGFDVIV-YNDCSCAK 95 (173)
T ss_dssp HHHHHHHHHHHHHTEEEEE-EESCCHHH
T ss_pred HHHHHHHHHHHHCCCEEEE-EeCCCHHH
Confidence 4566777777777776643 33444444
No 399
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=22.35 E-value=85 Score=24.55 Aligned_cols=38 Identities=21% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+.+.-|||.+...+..+...+++.|++
T Consensus 191 ~~~~~~~l~~~~~~~aI~~~nD~~A~g~~~al~~~G~~ 228 (412)
T 4fe7_A 191 QNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIP 228 (412)
T ss_dssp HHHHHHHHHHSCTTEEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCeEEEEEecHHHHHHHHHHHHcCCC
Confidence 45566777777778999999999999999999988763
No 400
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=22.28 E-value=1.2e+02 Score=21.99 Aligned_cols=37 Identities=5% Similarity=-0.146 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK 178 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~ 178 (197)
...+.+++...+.+..|||.+...+..+.+.|++.|+
T Consensus 177 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 213 (303)
T 3d02_A 177 RRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRA 213 (303)
T ss_dssp HHHHHHHHHHCTTEEEEEESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHhcCC
Confidence 3456666776666789999999999999999999987
No 401
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=22.16 E-value=40 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.5
Q ss_pred CchHHHHHHhcCCccCCCccEEEeehh
Q psy7789 41 TPGRLMDMLDKKMVSLDVCRYLCLDEA 67 (197)
Q Consensus 41 TP~~l~~~l~~~~~~l~~l~~vViDEa 67 (197)
||..+...+.+..++.+++.++-+||=
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr 70 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADER 70 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeec
Confidence 577777777777888999999999994
No 402
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.01 E-value=91 Score=26.65 Aligned_cols=41 Identities=5% Similarity=-0.067 Sum_probs=34.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHh---CCCCeEeecCCCChhhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLL---KGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~R 192 (197)
.++++++-++++.-+.+.++.++. .|.++..++|+.+.+++
T Consensus 67 ~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~ 110 (720)
T 2zj8_A 67 QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE 110 (720)
T ss_dssp HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc
Confidence 356899999999999999998853 48899999999877664
No 403
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=21.97 E-value=1.1e+02 Score=22.23 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK 178 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~ 178 (197)
...+.+++...+.+.-|||.+...+.-+.+.|++.|+
T Consensus 171 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 171 LSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHHHHHHHHHCSCCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCccEEEECCchHHHHHHHHHHHCCC
Confidence 3445566666666789999999999999999999886
No 404
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=21.89 E-value=57 Score=21.79 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCccEEEeehhhhhhcCCCHHHHHHHHhhccC-CceEEEEee
Q psy7789 57 DVCRYLCLDEADRMVDMGFEEDVRTIFSFFRG-QRQTLLFSA 97 (197)
Q Consensus 57 ~~l~~vViDEad~l~~~~~~~~i~~i~~~~~~-~~q~i~~SA 97 (197)
.+.+++++||.-.-++......+..++..+.. ..++++.|-
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH 121 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEC
Confidence 46789999998877776667777777777643 445555544
No 405
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=21.89 E-value=99 Score=23.26 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.0
Q ss_pred CCCccEEEeehhhhhh
Q psy7789 56 LDVCRYLCLDEADRMV 71 (197)
Q Consensus 56 l~~l~~vViDEad~l~ 71 (197)
..+-..+++||+|.+.
T Consensus 104 ~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLS 119 (338)
T ss_dssp CCTTCEEEEETGGGCC
T ss_pred ccCCCEEEEechhhcC
Confidence 3566799999999984
No 406
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=21.50 E-value=1.3e+02 Score=19.12 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=17.7
Q ss_pred EEEEe-cccccHHHHHHHHHhCCCCeEeec
Q psy7789 156 VLIFA-EKKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 156 ~lIF~-~s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
+.||. ++...|.....+|.++|+....++
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~d 35 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEYTNRL 35 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHcCCceEEEe
Confidence 34444 556777777777777776655444
No 407
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=21.43 E-value=1.2e+02 Score=27.37 Aligned_cols=40 Identities=3% Similarity=-0.194 Sum_probs=33.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhC--CCCeEeecCCCChhh
Q psy7789 152 TEPPVLIFAEKKQDVDAIHEYLLLK--GKPFFTLKSLKEDQN 191 (197)
Q Consensus 152 ~~~~~lIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~ 191 (197)
.+++++|-++++.-+...++.+++. +.++..++|+.+...
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~ 122 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINP 122 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEECT
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCC
Confidence 4567999999999999999999986 679999999986544
No 408
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.39 E-value=1.3e+02 Score=22.66 Aligned_cols=36 Identities=14% Similarity=-0.002 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~~ 179 (197)
...+.+++...+ + .|||.+...+..+.+.|++.|++
T Consensus 231 ~~~~~~ll~~~~-~-ai~~~nD~~A~g~~~al~~~G~~ 266 (348)
T 3bil_A 231 FEGATKLLDQGA-K-TLFAGDSMMTIGVIEACHKAGLV 266 (348)
T ss_dssp HHHHHHHHHTTC-S-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC-C-EEEEcChHHHHHHHHHHHHcCCC
Confidence 345666777666 7 99999999999999999999875
No 409
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=21.36 E-value=1.8e+02 Score=20.61 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=26.7
Q ss_pred CchhhHHHHHHHhhcCCCCEEEEeccccc---HHHHHHHHHhC--CCCeEeecCCC
Q psy7789 137 KQEAKIVYLLECLQKTEPPVLIFAEKKQD---VDAIHEYLLLK--GKPFFTLKSLK 187 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~~~~~~lIF~~s~~~---~~~l~~~L~~~--~~~~~~~h~~~ 187 (197)
...++...+.+.+.....++..+.-...+ ++.+.+.+.+. ++.+.+..++.
T Consensus 41 r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 41 INAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 34556666666666555555555433333 33343333322 56776666665
No 410
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=21.30 E-value=1.4e+02 Score=18.60 Aligned_cols=28 Identities=4% Similarity=0.065 Sum_probs=18.4
Q ss_pred EEEEe-cccccHHHHHHHHHhCCCCeEee
Q psy7789 156 VLIFA-EKKQDVDAIHEYLLLKGKPFFTL 183 (197)
Q Consensus 156 ~lIF~-~s~~~~~~l~~~L~~~~~~~~~~ 183 (197)
+.||. ++...|.....+|.++|+....+
T Consensus 2 i~iY~~~~C~~C~kak~~L~~~gi~~~~~ 30 (114)
T 1rw1_A 2 YVLYGIKACDTMKKARTWLDEHKVAYDFH 30 (114)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHCCCceEEE
Confidence 34554 55677777777887777765444
No 411
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=21.29 E-value=2.9e+02 Score=21.60 Aligned_cols=96 Identities=11% Similarity=0.191 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcc-CCceEEEEeecCChhHHHHHHHhc----CCCeEEEeCCCC-ccCcceeEEE----EEcCchhhHHHH
Q psy7789 76 EEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSAL----VKPITINVGRAG-AASMNVVQEV----EYVKQEAKIVYL 145 (197)
Q Consensus 76 ~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~----~~~~~i~~~~~~-~~~~~i~~~~----~~~~~~~k~~~l 145 (197)
.+.+..+++.+. +...+.++||....-++.+++... -++..+.-..-. .....+.-.+ ..+..+.|...+
T Consensus 223 ~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~~p~~~~~gK~~~i 302 (385)
T 4gxt_A 223 LDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKDFPISIREGKVQTI 302 (385)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEECEEECTTCCEEEEECTTSCCCSTHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeEEEEecCCceeeeecCccceeCCCchHHHH
Confidence 566777777775 467899999999877888877652 122111111000 0011122221 124567799999
Q ss_pred HHHhhcCC--CCEEEEecccccHHHHHH
Q psy7789 146 LECLQKTE--PPVLIFAEKKQDVDAIHE 171 (197)
Q Consensus 146 ~~~l~~~~--~~~lIF~~s~~~~~~l~~ 171 (197)
.+++.... .+++.|=+|..+...|..
T Consensus 303 ~~~~~~~~~~~~i~a~GDs~~D~~ML~~ 330 (385)
T 4gxt_A 303 NKLIKNDRNYGPIMVGGDSDGDFAMLKE 330 (385)
T ss_dssp HHHTCCTTEECCSEEEECSGGGHHHHHH
T ss_pred HHHHHhcCCCCcEEEEECCHhHHHHHhc
Confidence 88886543 478999999999888754
No 412
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=21.17 E-value=27 Score=29.61 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=28.9
Q ss_pred CCEEEEecccccHHHH-HHHHHhCC---CCeEeecCCCChhhh
Q psy7789 154 PPVLIFAEKKQDVDAI-HEYLLLKG---KPFFTLKSLKEDQNN 192 (197)
Q Consensus 154 ~~~lIF~~s~~~~~~l-~~~L~~~~---~~~~~~h~~~~~~~R 192 (197)
+++||.++++.=+... ++.|++.+ +++..++|+.+..++
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~ 99 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKIS 99 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhH
Confidence 6899999999888888 77777653 899999999887654
No 413
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.12 E-value=86 Score=22.58 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhCCC
Q psy7789 142 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGK 178 (197)
Q Consensus 142 ~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~~~ 178 (197)
...+.+++...+.+.-|||.+...|..+.+.|++.|+
T Consensus 170 ~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 170 LNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCccEEEECCCcHHHHHHHHHHHcCC
Confidence 3455666766666889999999999999999998875
No 414
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=21.11 E-value=1.8e+02 Score=19.73 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHHHHhhcCCCCEEEEe--cccccHHHHHHHHHhCCCCeEeec
Q psy7789 144 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGKPFFTLK 184 (197)
Q Consensus 144 ~l~~~l~~~~~~~lIF~--~s~~~~~~l~~~L~~~~~~~~~~h 184 (197)
.|...|+..+-..||.| .|.-.+...+..+.++||++..+.
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~~~Gy~v~vv~ 152 (180)
T 1im5_A 110 DLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLR 152 (180)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhCCCCEEEEEEeecCHHHHHHHHHHHHCCCEEEEeh
Confidence 46677777777788888 777888888888899999988765
No 415
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=20.98 E-value=1.6e+02 Score=21.12 Aligned_cols=51 Identities=6% Similarity=-0.041 Sum_probs=24.6
Q ss_pred CchhhHHHHHHHhhcCCCCEEEEecccccHH---HHHHHHHhC--CCCeEeecCCC
Q psy7789 137 KQEAKIVYLLECLQKTEPPVLIFAEKKQDVD---AIHEYLLLK--GKPFFTLKSLK 187 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~---~l~~~L~~~--~~~~~~~h~~~ 187 (197)
...++...+.+.+...+.++..+.-...+.+ .+.+.+.+. ++++.+..++.
T Consensus 44 r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 44 LKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3445566666666655555555543333333 333333222 45555555443
No 416
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=20.95 E-value=1.5e+02 Score=25.27 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=37.5
Q ss_pred EEEEEcCchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHHHhC
Q psy7789 131 QEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK 176 (197)
Q Consensus 131 ~~~~~~~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L~~~ 176 (197)
+....+....|...+..++...+.++||.+++...|..+++.|+..
T Consensus 31 ~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 31 VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHHH
Confidence 3455667777877777777776778999999999999999999876
No 417
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=20.84 E-value=20 Score=26.28 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=11.8
Q ss_pred ccEEEeehhhhhhc
Q psy7789 59 CRYLCLDEADRMVD 72 (197)
Q Consensus 59 l~~vViDEad~l~~ 72 (197)
...+++||+|.+..
T Consensus 104 ~~vl~iDEid~l~~ 117 (268)
T 2r62_A 104 PSIIFIDEIDAIGK 117 (268)
T ss_dssp SCEEEESCGGGTTC
T ss_pred CeEEEEeChhhhcc
Confidence 46899999999864
No 418
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=20.81 E-value=1.2e+02 Score=25.53 Aligned_cols=38 Identities=24% Similarity=0.535 Sum_probs=26.5
Q ss_pred eEEEEEcCCChHHhHH--HHh---cCCcEEEe-----CchHHHHHHhc
Q psy7789 14 RTCLAIGGVPMNQSLD--VIK---KGCHMMVA-----TPGRLMDMLDK 51 (197)
Q Consensus 14 ~~~~~~gg~~~~~~~~--~l~---~~~~Ili~-----TP~~l~~~l~~ 51 (197)
=++.++||.++.+-.. .++ ++.+|+|| ||..++..+..
T Consensus 532 iiVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~np~~fl~~l~~ 579 (592)
T 3puk_A 532 LIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKM 579 (592)
T ss_dssp EEEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEECHHHHHHHHSS
T ss_pred EEEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHH
Confidence 3667999998776542 232 34799988 78888877753
No 419
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=20.79 E-value=40 Score=24.58 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=26.0
Q ss_pred CcEEEe---CchHHHHHHhcCCccCCCccEEEeehh
Q psy7789 35 CHMMVA---TPGRLMDMLDKKMVSLDVCRYLCLDEA 67 (197)
Q Consensus 35 ~~Ili~---TP~~l~~~l~~~~~~l~~l~~vViDEa 67 (197)
+.|.++ ||..+...+....++.+++.++-+||=
T Consensus 39 ~~l~lsgGstp~~~y~~L~~~~idw~~v~~f~~DEr 74 (233)
T 3nwp_A 39 ASLVVSGGSTPLKLFQLLSMKSIDWSDVYITLADER 74 (233)
T ss_dssp EEEEECCSSTTHHHHHHHHHCCSCGGGEEEEESEEE
T ss_pred EEEEEcCCCCHHHHHHHHHhcCCChhHeEEEeCeec
Confidence 445554 578888888778888999999999994
No 420
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=20.60 E-value=1.5e+02 Score=21.24 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=27.1
Q ss_pred CchhhHHHHHHHhhcCCCCEEEEecccc---cHHHHHHHHHhC--CCCeEeecCC
Q psy7789 137 KQEAKIVYLLECLQKTEPPVLIFAEKKQ---DVDAIHEYLLLK--GKPFFTLKSL 186 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~~~~~~lIF~~s~~---~~~~l~~~L~~~--~~~~~~~h~~ 186 (197)
...++...+...++..+.++..+.-... .++.+.+.+.+. ++++.+..++
T Consensus 38 r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 38 RTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp SCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4456667777777666556655543333 344444444332 5666655554
No 421
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=20.45 E-value=2.1e+02 Score=20.92 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=26.0
Q ss_pred CchhhHHHHHHHhhcCCCCEEEEecccccHHHHHHHH---HhC--CCCeEeecCCC
Q psy7789 137 KQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL---LLK--GKPFFTLKSLK 187 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~~~~~~lIF~~s~~~~~~l~~~L---~~~--~~~~~~~h~~~ 187 (197)
...++...+.+.+...+.++..+.-...+.+.+.+.+ .+. ++.+.+..++.
T Consensus 56 r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 56 RDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGR 111 (279)
T ss_dssp SCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 3455666666666665556555543444433333333 222 45665555543
No 422
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=20.23 E-value=1e+02 Score=21.91 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=20.8
Q ss_pred CCCEEEEeccc-------ccHHHHHHHHHhCCCCeEeecC
Q psy7789 153 EPPVLIFAEKK-------QDVDAIHEYLLLKGKPFFTLKS 185 (197)
Q Consensus 153 ~~~~lIF~~s~-------~~~~~l~~~L~~~~~~~~~~h~ 185 (197)
.+++-|||.++ +.|.++.+.|.++|+. .++|
T Consensus 22 ~~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~--lV~G 59 (199)
T 3qua_A 22 QWAVCVYCASGPTHPELLELAAEVGSSIAARGWT--LVSG 59 (199)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCE--EEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCE--EEEC
Confidence 35678888664 5667777778887754 3444
No 423
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.01 E-value=2.4e+02 Score=21.11 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHhhc-CCCCEEEEecccccHHHHHHHHHhCCCCeEeecCCCChhhh
Q psy7789 137 KQEAKIVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGKPFFTLKSLKEDQNN 192 (197)
Q Consensus 137 ~~~~k~~~l~~~l~~-~~~~~lIF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 192 (197)
........+..++.. .+...||+++.......+.+.+.+.|+++..+....+...+
T Consensus 45 ~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~ 101 (350)
T 3h75_A 45 DPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQR 101 (350)
T ss_dssp CHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHH
Done!