RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7789
(197 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 116 bits (291), Expect = 2e-33
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 12 PLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMV 71
L+ GG + + +K +++V TPGR++D +++ ++L +Y LDEAD M+
Sbjct: 100 NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML 158
Query: 72 DMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 119
+MGF +DV I + ++ LLFSATMP++I N A+ + I
Sbjct: 159 NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 96.1 bits (238), Expect = 2e-25
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 13 LRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD 72
++ IGG + + + + G H++ TPGR+ DM+ ++ + + L LDEAD M++
Sbjct: 114 VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 173
Query: 73 MGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGR 121
GF+E + ++ + Q +L SAT+P +I + PI I V R
Sbjct: 174 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR 222
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 95.3 bits (236), Expect = 4e-25
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92
+ ++V TPGR+ D + ++ D + LDEAD M+ GF+E + IF+ Q
Sbjct: 126 RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 185
Query: 93 LLFSATMPKKIQNFARSALVKPITINV 119
+L SATMP + + P+ I V
Sbjct: 186 VLLSATMPNDVLEVTTKFMRNPVRILV 212
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 94.9 bits (235), Expect = 6e-25
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92
+ H++V TPGR+ DML+++ +S + LDEAD M+ GF++ + IF Q
Sbjct: 130 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 189
Query: 93 LLFSATMPKKIQNFARSALVKPITINVGR 121
+L SATMP + + + PI I V +
Sbjct: 190 VLLSATMPSDVLEVTKKFMRDPIRILVKK 218
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 93.4 bits (231), Expect = 2e-24
Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 14 RTCLAIGGVPMNQSLDVIKK-GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVD 72
+ + GG+ + + +V+KK H++V TPGR++ + K ++L ++ LDE D+M++
Sbjct: 100 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 159
Query: 73 -MGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 119
+ DV+ IF ++Q ++FSAT+ K+I+ R + P+ I V
Sbjct: 160 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 91.1 bits (225), Expect = 3e-23
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 11 IPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRM 70
PLR+C+ GG + + ++ GCH++VATPGRL+D ++K +SL+ C+Y+ LDEADRM
Sbjct: 125 TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRM 184
Query: 71 VDMGFEEDVRTIFSFFR----GQRQTLLFSATMPKKIQNFARSALVKPITINVG 120
+DMGFE +R I RQTL+FSAT PK+IQ A L I + VG
Sbjct: 185 LDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 85.8 bits (211), Expect = 1e-21
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 20 GGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDV 79
GG + + + H+++ATPGR++D++ K + +D + + LDEAD+++ F + +
Sbjct: 108 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIM 167
Query: 80 RTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 118
I RQ LL+SAT P +Q F S L KP IN
Sbjct: 168 EDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 81.6 bits (200), Expect = 4e-20
Identities = 35/111 (31%), Positives = 57/111 (51%)
Query: 10 PIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADR 69
+ + GG + + + + H++V TPGR++D+ +K+ L C +DEAD+
Sbjct: 95 HCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 154
Query: 70 MVDMGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 120
M+ F+ + I SF Q+LLFSAT P ++ F L KP IN+
Sbjct: 155 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 69.7 bits (169), Expect = 2e-15
Identities = 34/101 (33%), Positives = 59/101 (58%)
Query: 19 IGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEED 78
IGG ++L+ + H+++ TPGR+ D + ++ + + L +DEAD M+DMGF D
Sbjct: 108 IGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITD 167
Query: 79 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 119
V I + Q L+FSAT+P+K++ F + + P ++V
Sbjct: 168 VDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 65.3 bits (158), Expect = 1e-13
Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 14/129 (10%)
Query: 5 FISALPIPLRTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCL 64
+ + + + + L K L ++ +
Sbjct: 109 YAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFV 168
Query: 65 DEADRMVD-----------MGFEEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK 113
D+ D ++ +GF D++T + ++ +AT K + L
Sbjct: 169 DDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL-- 226
Query: 114 PITINVGRA 122
+ ++G +
Sbjct: 227 -LNFDIGSS 234
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 53.9 bits (128), Expect = 8e-10
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 21 GVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMG--FEED 78
+ ++ P RLM + ++ L +DEA + G F +
Sbjct: 102 EQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPE 161
Query: 79 VRTIFSFFR--GQRQTLLFSATMPKKIQ 104
+ + + +AT +
Sbjct: 162 YAALGQLRQRFPTLPFMALTATADDTTR 189
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 54.2 bits (129), Expect = 1e-09
Identities = 19/160 (11%), Positives = 38/160 (23%), Gaps = 17/160 (10%)
Query: 20 GGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDV 79
++ G ++ M + + + +DEA
Sbjct: 62 PIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARG 121
Query: 80 RTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVKQE 139
G+ + +AT P F +S + + E E
Sbjct: 122 YISTRVEMGEAAGIFMTATPPGSRDPFPQSNA-----------------PIMDEEREIPE 164
Query: 140 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGKP 179
E + + + F + + I L GK
Sbjct: 165 RSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKK 204
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 50.7 bits (120), Expect = 1e-08
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 35 CHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFR---GQRQ 91
C ++V T + ++ + + L +DE + + + + R +
Sbjct: 115 CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALR 174
Query: 92 TLLFSATMPKKIQNFAR 108
+ SAT P + A
Sbjct: 175 VIGLSATAP-NVTEIAE 190
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 41.7 bits (96), Expect = 2e-05
Identities = 13/76 (17%), Positives = 26/76 (34%)
Query: 33 KGCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQRQT 92
++VATP + + L +SL+ + DEA R V + +
Sbjct: 100 ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159
Query: 93 LLFSATMPKKIQNFAR 108
+ +A+ +
Sbjct: 160 IGLTASPGSTPEKIME 175
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 35.5 bits (81), Expect = 0.002
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 130 VQEVEYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL 173
V+ VE V I L L+K +I+A ++ + I+E L
Sbjct: 1 VRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESL 45
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 31.9 bits (71), Expect = 0.027
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 128 NVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEY 172
N+ Q V + + L L+ E L+F + K+D +
Sbjct: 3 NIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASM 47
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
[TaxId: 1358]}
Length = 340
Score = 27.8 bits (61), Expect = 0.78
Identities = 7/57 (12%), Positives = 21/57 (36%)
Query: 34 GCHMMVATPGRLMDMLDKKMVSLDVCRYLCLDEADRMVDMGFEEDVRTIFSFFRGQR 90
++ G + ++ + L R++ L + +V + T F + ++
Sbjct: 167 TGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQ 223
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 24.8 bits (53), Expect = 4.3
Identities = 6/62 (9%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 14 RTCLAIGGVPMNQSLDVIKKGCHMMVATPGRLMDMLDKKMVS--LDVCRYLCLDEADRMV 71
+ C I +P + + + + + + ++D + ++ D+A +
Sbjct: 8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE 67
Query: 72 DM 73
+
Sbjct: 68 RL 69
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 25.2 bits (54), Expect = 5.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 171 EYLLLKGKPFFTLKSLKED 189
Y + +G +TLK D
Sbjct: 339 FYWIFRGMEPWTLKHKGSD 357
>d2d9ra1 b.129.2.1 (A:20-104) Hypothetical protein PG0164
{Porphyromonas gingivalis [TaxId: 837]}
Length = 85
Score = 23.5 bits (51), Expect = 8.3
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 19 IGGVPMNQSLDVIKKGCHMM 38
G P + + CH++
Sbjct: 41 FDGYPYTGYIVRMGLPCHIL 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.399
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 693,499
Number of extensions: 30598
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 22
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.8 bits)