BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy779
         (50 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13002|ELF1_DROME Protein grainyhead OS=Drosophila melanogaster GN=grh PE=2 SV=3
          Length = 1333

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 1    MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
            MTATGRKK+DELYHP  +RSEFY M D  KPPVLFSPAED++K
Sbjct: 1090 MTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEK 1132


>sp|Q9X6J4|TRPE_GEOSE Anthranilate synthase component 1 OS=Geobacillus stearothermophilus
           GN=trpE PE=3 SV=1
          Length = 508

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 3   ATGRKKMDELYHPPCERSEFYTMADTTK 30
           A   K  DELYH P ER+E Y + D  +
Sbjct: 326 AEDEKLADELYHDPKERAEHYMLVDLAR 353


>sp|P30526|TRPE_BACCA Anthranilate synthase component 1 OS=Bacillus caldotenax GN=trpE
           PE=3 SV=1
          Length = 508

 Score = 28.9 bits (63), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 10  DELYHPPCERSEFYTMADTTK 30
           DELYH P ER+E Y + D  +
Sbjct: 333 DELYHDPKERAEHYMLVDLAR 353


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,743,526
Number of Sequences: 539616
Number of extensions: 593246
Number of successful extensions: 944
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 3
length of query: 50
length of database: 191,569,459
effective HSP length: 23
effective length of query: 27
effective length of database: 179,158,291
effective search space: 4837273857
effective search space used: 4837273857
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)