Query psy779
Match_columns 50
No_of_seqs 13 out of 15
Neff 1.9
Searched_HMMs 46136
Date Fri Aug 16 18:54:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4091|consensus 98.1 1.7E-06 3.7E-11 65.6 1.6 45 1-45 250-294 (463)
2 PHA02980 hypothetical protein; 75.6 1.3 2.8E-05 29.7 0.8 21 17-39 25-45 (160)
3 PF05201 GlutR_N: Glutamyl-tRN 51.4 6.6 0.00014 24.8 0.6 15 13-27 41-55 (152)
4 PF06618 DUF1148: Protein of u 47.1 5.9 0.00013 26.0 -0.1 10 31-40 32-41 (114)
5 PF07819 PGAP1: PGAP1-like pro 45.4 11 0.00023 24.9 0.9 13 27-39 1-13 (225)
6 cd05213 NAD_bind_Glutamyl_tRNA 44.8 9 0.00019 26.1 0.5 13 14-26 45-57 (311)
7 PF13901 DUF4206: Domain of un 39.3 8.4 0.00018 25.5 -0.3 16 16-31 107-122 (202)
8 PF02172 KIX: KIX domain; Int 39.2 3.9 8.5E-05 24.7 -1.8 17 10-26 52-68 (81)
9 smart00153 VHP Villin headpiec 39.2 6.5 0.00014 20.6 -0.7 11 16-26 12-22 (36)
10 KOG4577|consensus 38.6 12 0.00027 28.7 0.4 23 5-27 108-141 (383)
11 TIGR01035 hemA glutamyl-tRNA r 31.8 19 0.00041 25.8 0.5 11 15-25 46-56 (417)
12 PRK00045 hemA glutamyl-tRNA re 30.7 20 0.00044 25.6 0.4 12 15-26 48-59 (423)
13 PRK04190 glucose-6-phosphate i 28.2 34 0.00073 22.9 1.2 13 11-23 89-101 (191)
14 KOG1346|consensus 28.1 29 0.00063 28.4 0.9 25 16-46 245-269 (659)
15 PRK10468 hydrogenase 2 small s 27.2 23 0.0005 26.7 0.3 19 10-28 225-243 (371)
16 PRK13940 glutamyl-tRNA reducta 25.7 28 0.00061 25.4 0.5 11 15-25 48-58 (414)
17 PF02209 VHP: Villin headpiece 24.3 14 0.00029 19.5 -1.1 10 16-25 12-21 (36)
18 smart00132 LIM Zinc-binding do 24.0 35 0.00077 15.3 0.5 12 7-18 17-28 (39)
19 PRK00676 hemA glutamyl-tRNA re 23.6 33 0.00073 25.0 0.5 12 15-26 49-60 (338)
20 PF00086 Thyroglobulin_1: Thyr 22.8 32 0.0007 18.9 0.2 19 6-24 17-35 (68)
21 PF12369 GnHR_trans: Gonadotro 22.5 46 0.001 19.6 0.9 14 7-20 2-15 (71)
22 PF01686 Adeno_Penton_B: Adeno 22.2 35 0.00076 26.9 0.4 26 21-46 322-347 (456)
23 PF10238 Eapp_C: E2F-associate 22.1 38 0.00082 22.1 0.5 21 6-26 100-131 (136)
24 KOG4543|consensus 21.5 44 0.00095 24.0 0.8 12 21-32 128-139 (208)
25 PF04248 DUF427: Domain of unk 20.7 55 0.0012 19.6 1.0 18 26-43 20-37 (95)
No 1
>KOG4091|consensus
Probab=98.06 E-value=1.7e-06 Score=65.56 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=42.2
Q ss_pred CccccccccccccCCcccccceeecccCCCCCeeeCCcccccccc
Q psy779 1 MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDA 45 (50)
Q Consensus 1 mtatgRKK~delYH~~ceRSeFY~M~Dl~Kpp~lFsp~ed~dk~~ 45 (50)
|+.++||++.+.|||...|+|||.|.|+.+|+|.|+|+.|....+
T Consensus 250 ir~~~rk~~~~~~~~~~~~te~~~~~d~~~~~v~~s~~~~~~~~~ 294 (463)
T KOG4091|consen 250 IRDEERKEQYQPSYGTTILTECSPWPDIAEPDVPNSPSPDHTYSS 294 (463)
T ss_pred cccHHHHhhccccCcceeeeeccCCcccccccCCCCcCcCccccc
Confidence 678999999999999999999999999999999999999986664
No 2
>PHA02980 hypothetical protein; Provisional
Probab=75.65 E-value=1.3 Score=29.75 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.0
Q ss_pred ccccceeecccCCCCCeeeCCcc
Q psy779 17 CERSEFYTMADTTKPPVLFSPAE 39 (50)
Q Consensus 17 ceRSeFY~M~Dl~Kpp~lFsp~e 39 (50)
-|++|||.-..|.||+ |+||.
T Consensus 25 ~~~~~~~~Y~~L~KP~--~~PP~ 45 (160)
T PHA02980 25 IEKSEFYNYTKSNKHL--IFPPY 45 (160)
T ss_pred HHHhcccCCccccCCC--CCCCc
Confidence 4889999999999997 67764
No 3
>PF05201 GlutR_N: Glutamyl-tRNAGlu reductase, N-terminal domain; InterPro: IPR015895 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the N-terminal domain of glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A.
Probab=51.38 E-value=6.6 Score=24.81 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=11.3
Q ss_pred cCCcccccceeeccc
Q psy779 13 YHPPCERSEFYTMAD 27 (50)
Q Consensus 13 YH~~ceRSeFY~M~D 27 (50)
+=.-|+|.|+|-.++
T Consensus 41 iLsTCNR~Eiy~~~~ 55 (152)
T PF05201_consen 41 ILSTCNRVEIYVVSD 55 (152)
T ss_dssp EEEETTEEEEEEES-
T ss_pred EeecCCeEEEEEEeC
Confidence 345799999998766
No 4
>PF06618 DUF1148: Protein of unknown function (DUF1148); InterPro: IPR009529 This family consists of several Maize streak virus proteins of unknown function.
Probab=47.09 E-value=5.9 Score=26.03 Aligned_cols=10 Identities=70% Similarity=1.162 Sum_probs=8.5
Q ss_pred CCeeeCCccc
Q psy779 31 PPVLFSPAED 40 (50)
Q Consensus 31 pp~lFsp~ed 40 (50)
-|+||||+|+
T Consensus 32 lpalfspaee 41 (114)
T PF06618_consen 32 LPALFSPAEE 41 (114)
T ss_pred hHhhcCcccc
Confidence 4899999986
No 5
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=45.41 E-value=11 Score=24.86 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=10.6
Q ss_pred cCCCCCeeeCCcc
Q psy779 27 DTTKPPVLFSPAE 39 (50)
Q Consensus 27 Dl~Kpp~lFsp~e 39 (50)
.|.|.||||+|-.
T Consensus 1 ~~~g~pVlFIhG~ 13 (225)
T PF07819_consen 1 KLSGIPVLFIHGN 13 (225)
T ss_pred CCCCCEEEEECcC
Confidence 3789999999853
No 6
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=44.76 E-value=9 Score=26.13 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.1
Q ss_pred CCcccccceeecc
Q psy779 14 HPPCERSEFYTMA 26 (50)
Q Consensus 14 H~~ceRSeFY~M~ 26 (50)
=.-|+|.|+|--+
T Consensus 45 LsTCNR~EiY~~~ 57 (311)
T cd05213 45 LSTCNRVELYLVG 57 (311)
T ss_pred EecCCeEEEEEEe
Confidence 3569999999643
No 7
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=39.33 E-value=8.4 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.8
Q ss_pred cccccceeecccCCCC
Q psy779 16 PCERSEFYTMADTTKP 31 (50)
Q Consensus 16 ~ceRSeFY~M~Dl~Kp 31 (50)
..|-+++|||+||..-
T Consensus 107 l~~~~~~YSl~DL~~v 122 (202)
T PF13901_consen 107 LLEDPHLYSLADLVQV 122 (202)
T ss_pred hhhCCceEcHHHHHHH
Confidence 4577999999999753
No 8
>PF02172 KIX: KIX domain; InterPro: IPR003101 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner []. This provides a model for activator:coactivator interactions. The KIX domain of CBP also binds to transactivation domains of other nuclear factors including Myb and Jun.; GO: 0003712 transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2KWF_A 1KDX_A 2LQH_A 2LQI_A 1SB0_A 2AGH_B.
Probab=39.20 E-value=3.9 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.636 Sum_probs=13.6
Q ss_pred ccccCCcccccceeecc
Q psy779 10 DELYHPPCERSEFYTMA 26 (50)
Q Consensus 10 delYH~~ceRSeFY~M~ 26 (50)
.++|...++|.|+|+|.
T Consensus 52 ~~~fe~A~sreeYY~ll 68 (81)
T PF02172_consen 52 KDMFETAQSREEYYHLL 68 (81)
T ss_dssp HHHHHC-SSHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHH
Confidence 46788999999999985
No 9
>smart00153 VHP Villin headpiece domain.
Probab=39.16 E-value=6.5 Score=20.62 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=8.7
Q ss_pred cccccceeecc
Q psy779 16 PCERSEFYTMA 26 (50)
Q Consensus 16 ~ceRSeFY~M~ 26 (50)
-|.|+|||.+-
T Consensus 12 gmsr~eF~~LP 22 (36)
T smart00153 12 GMTREEFYKLP 22 (36)
T ss_pred CCCHHHHHhCc
Confidence 47899999873
No 10
>KOG4577|consensus
Probab=38.58 E-value=12 Score=28.73 Aligned_cols=23 Identities=52% Similarity=0.868 Sum_probs=19.3
Q ss_pred cccccccccCCc------cccc-----ceeeccc
Q psy779 5 GRKKMDELYHPP------CERS-----EFYTMAD 27 (50)
Q Consensus 5 gRKK~delYH~~------ceRS-----eFY~M~D 27 (50)
=||-+|-.||-. |.|+ |||-|.|
T Consensus 108 VRkAqd~VYHl~CF~C~iC~R~L~TGdEFYLmeD 141 (383)
T KOG4577|consen 108 VRKAQDFVYHLHCFACFICKRQLATGDEFYLMED 141 (383)
T ss_pred HHHhhcceeehhhhhhHhhhcccccCCeeEEecc
Confidence 388899999986 4665 8999999
No 11
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=31.82 E-value=19 Score=25.79 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=9.2
Q ss_pred Ccccccceeec
Q psy779 15 PPCERSEFYTM 25 (50)
Q Consensus 15 ~~ceRSeFY~M 25 (50)
.-|+|.|+|--
T Consensus 46 sTCNR~EiY~~ 56 (417)
T TIGR01035 46 STCNRVEIYAV 56 (417)
T ss_pred ecCCeEEEEEE
Confidence 56999999964
No 12
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=30.69 E-value=20 Score=25.55 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.7
Q ss_pred Ccccccceeecc
Q psy779 15 PPCERSEFYTMA 26 (50)
Q Consensus 15 ~~ceRSeFY~M~ 26 (50)
.-|+|.|+|--.
T Consensus 48 sTCNR~EiY~~~ 59 (423)
T PRK00045 48 STCNRTEIYAVV 59 (423)
T ss_pred ecCCeEEEEEEe
Confidence 469999999754
No 13
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=28.23 E-value=34 Score=22.92 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=11.4
Q ss_pred cccCCccccccee
Q psy779 11 ELYHPPCERSEFY 23 (50)
Q Consensus 11 elYH~~ceRSeFY 23 (50)
+-||+.+++.|+|
T Consensus 89 gH~H~~~~~~Eiy 101 (191)
T PRK04190 89 GHFHAKADRAEIY 101 (191)
T ss_pred CeEcCCCCCCEEE
Confidence 3499999999999
No 14
>KOG1346|consensus
Probab=28.07 E-value=29 Score=28.37 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=20.5
Q ss_pred cccccceeecccCCCCCeeeCCccccccccc
Q psy779 16 PCERSEFYTMADTTKPPVLFSPAEDIDKDAL 46 (50)
Q Consensus 16 ~ceRSeFY~M~Dl~Kpp~lFsp~ed~dk~~~ 46 (50)
--|||-|| .|+-+|+-++|.++..+
T Consensus 245 GkeRsiff------epd~FfvspeDLp~~~n 269 (659)
T KOG1346|consen 245 GKERSIFF------EPDGFFVSPEDLPKAVN 269 (659)
T ss_pred CccceeEe------cCCcceeChhHCccccc
Confidence 35899999 48999999999988643
No 15
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=27.21 E-value=23 Score=26.65 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=14.6
Q ss_pred ccccCCcccccceeecccC
Q psy779 10 DELYHPPCERSEFYTMADT 28 (50)
Q Consensus 10 delYH~~ceRSeFY~M~Dl 28 (50)
..+-|..|+|.+||---..
T Consensus 225 g~~vH~~C~R~~~fe~g~f 243 (371)
T PRK10468 225 GRLIHEHCERRPHFDAGRF 243 (371)
T ss_pred cCccccCCCcchhhhccCh
Confidence 3467999999999975443
No 16
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=25.68 E-value=28 Score=25.45 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=9.2
Q ss_pred Ccccccceeec
Q psy779 15 PPCERSEFYTM 25 (50)
Q Consensus 15 ~~ceRSeFY~M 25 (50)
.-|+|.|.|--
T Consensus 48 sTCNR~EiY~~ 58 (414)
T PRK13940 48 STCNRTEVYLE 58 (414)
T ss_pred ecCCeEEEEEE
Confidence 46999999964
No 17
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=24.28 E-value=14 Score=19.54 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=7.1
Q ss_pred cccccceeec
Q psy779 16 PCERSEFYTM 25 (50)
Q Consensus 16 ~ceRSeFY~M 25 (50)
.+.|+|||.|
T Consensus 12 gm~~~eF~~l 21 (36)
T PF02209_consen 12 GMSREEFYKL 21 (36)
T ss_dssp SS-HHHHHHS
T ss_pred CCCHHHHHHC
Confidence 3688999876
No 18
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=23.99 E-value=35 Score=15.35 Aligned_cols=12 Identities=25% Similarity=0.916 Sum_probs=8.1
Q ss_pred cccccccCCccc
Q psy779 7 KKMDELYHPPCE 18 (50)
Q Consensus 7 KK~delYH~~ce 18 (50)
+.....||+.|=
T Consensus 17 ~~~~~~~H~~Cf 28 (39)
T smart00132 17 RALGKVWHPECF 28 (39)
T ss_pred EeCCccccccCC
Confidence 345678898773
No 19
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=23.60 E-value=33 Score=25.01 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=9.7
Q ss_pred Ccccccceeecc
Q psy779 15 PPCERSEFYTMA 26 (50)
Q Consensus 15 ~~ceRSeFY~M~ 26 (50)
.-|+|.|+|--.
T Consensus 49 STCNRtEiY~~~ 60 (338)
T PRK00676 49 LTCHRAELYYYS 60 (338)
T ss_pred ecCCcEEEEEEe
Confidence 569999999643
No 20
>PF00086 Thyroglobulin_1: Thyroglobulin type-1 repeat; InterPro: IPR000716 Thyroglobulin (Tg) is a large glycoprotein specific to the thyroid gland and is the precursor of the iodinated thyroid hormones thyroxine (T4) and triiodothyronine (T3). The N-terminal section of Tg contains 10 repeats of a domain of about 65 amino acids which is known as the Tg type-1 repeat [, ]. Such a domain has also been found as a single or repeated sequence in the HLA class II associated invariant chain []; human pancreatic carcinoma marker proteins GA733-1 and GA733-2 []; nidogen (entactin), a sulphated glycoprotein which is widely distributed in basement membranes and that is tightly associated with laminin; insulin-like growth factor binding proteins (IGFBP) []; saxiphilin, a transferrin-like protein from Rana catesbeiana (Bull frog) that binds specifically to the neurotoxin saxitoxin []; chum salmon egg cysteine proteinase inhibitor, and equistatin, a thiol-protease inhibitor from Actinia equina (sea anemone) []. The existence of Thyr-1 domains in such a wide variety of proteins raises questions about their activity and function, and their interactions with neighbouring domains. The Thyr-1 and related domains belong to MEROPS proteinase inhibitor family I31, clan IX. Equistatin from A. equina is composed of three Thyr-1 domains; as with other proteins that contains Thyr-1 domains, the thyropins, they bind reversibly and tightly to cysteine proteases (inhibitor family C1). In equistatin inhibition of papain is a function of domain-1. Unusually domain-2 inhibits cathepsin D, an aspartic protease (inhibitor family A1) and has no activity against papain. Domain-3, does not inhibit either papain or cathepsin D, and its function or its target peptidase has yet to be determined [, ].; PDB: 2H7T_A 2DSR_G 1RMJ_A 1ICF_I 1L3H_A 1ZT3_A 2DSQ_H 1ZT5_A.
Probab=22.83 E-value=32 Score=18.87 Aligned_cols=19 Identities=21% Similarity=0.597 Sum_probs=13.3
Q ss_pred ccccccccCCcccccceee
Q psy779 6 RKKMDELYHPPCERSEFYT 24 (50)
Q Consensus 6 RKK~delYH~~ceRSeFY~ 24 (50)
.....+.|.|.|+..-.|.
T Consensus 17 ~~~~~~~~~P~C~~~G~y~ 35 (68)
T PF00086_consen 17 SSSSDGVFVPQCDEDGSYE 35 (68)
T ss_dssp TSCCSECEEE-B-TTSSB-
T ss_pred ccCCCCCcCceeCCCCCee
Confidence 4677889999999888875
No 21
>PF12369 GnHR_trans: Gonadotropin hormone receptor transmembrane region ; InterPro: IPR024635 This domain represents the transmembrane region of follicular stimulating hormone and luteinizing hormone receptors- the two major gonadotropin hormone receptors. This domain is found in eukaryotes, and is approximately 70 amino acids in length. There are two completely conserved C residues that may be functionally important. The transmembrane region is conserved between the two different receptors, while the extracellular ligand binding domains are less well conserved []. The follicular stimulating hormone and luteinizing hormone receptors are G protein-coupled receptors involved in development and maturation of germ cells in both fecund genders.
Probab=22.48 E-value=46 Score=19.64 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=10.9
Q ss_pred cccccccCCccccc
Q psy779 7 KKMDELYHPPCERS 20 (50)
Q Consensus 7 KK~delYH~~ceRS 20 (50)
++.--+-||.|++|
T Consensus 2 ~R~~s~~hpicN~S 15 (71)
T PF12369_consen 2 HRQISELHPICNKS 15 (71)
T ss_pred cccccccccccCCC
Confidence 44555689999999
No 22
>PF01686 Adeno_Penton_B: Adenovirus penton base protein; InterPro: IPR002605 This family consists of various adenovirus penton base proteins, from both the mastadenoviridae having mammalian hosts and the aviadenoviridae having avian hosts. The penton base is a major structural protein forming part of the penton which consists of a base and a fibre, the pentons hold a morphologically prominent position at the vertex capsomer in the adenovirus particle []. In mammalian adenovirus there is only one tail on each base where as in avian adenovirus there are two [].; GO: 0005198 structural molecule activity; PDB: 3IZO_D 3IYN_M 1VSZ_N 2C9F_D 2C9G_B 2C6S_I 2BLD_B 1X9P_A 1X9T_A.
Probab=22.18 E-value=35 Score=26.93 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=12.0
Q ss_pred ceeecccCCCCCeeeCCccccccccc
Q psy779 21 EFYTMADTTKPPVLFSPAEDIDKDAL 46 (50)
Q Consensus 21 eFY~M~Dl~Kpp~lFsp~ed~dk~~~ 46 (50)
-++||-|+.++|+-|.+....++++.
T Consensus 322 ~YWSlPD~~~~PvtF~~~~~~~~~PV 347 (456)
T PF01686_consen 322 VYWSLPDMFKAPVTFKSSQQTSNYPV 347 (456)
T ss_dssp EEEE-TTTB---TT----S-TTS--E
T ss_pred eEeeCchhccCCceecCCCccccCce
Confidence 47899999999999999876666543
No 23
>PF10238 Eapp_C: E2F-associated phosphoprotein; InterPro: IPR019370 This entry represents E2F binding proteins. E2F transcription factors play an essential role in cell proliferation and apoptosis and their activity is frequently deregulated in human cancers. E2F activity is regulated by a variety of mechanisms, frequently mediated by proteins binding to individual members or a subgroup of the family. E2F-associated phosphoprotein (EAPP)interacts with a subset of E2F factors and influences E2F-dependent promoter activity. EAPP is present throughout the cell cycle but disappears during mitosis [].
Probab=22.15 E-value=38 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=14.3
Q ss_pred ccccccccCCcc-----------cccceeecc
Q psy779 6 RKKMDELYHPPC-----------ERSEFYTMA 26 (50)
Q Consensus 6 RKK~delYH~~c-----------eRSeFY~M~ 26 (50)
+..-+|+|||++ |+.|-||.-
T Consensus 100 ~~~~~e~yhPV~Cs~C~TeVaV~D~DEVYHFF 131 (136)
T PF10238_consen 100 EPDKEETYHPVKCSECSTEVAVYDKDEVYHFF 131 (136)
T ss_pred ccCCCccEeceecccCCCEEEEEeccCceEEE
Confidence 344569999985 566766643
No 24
>KOG4543|consensus
Probab=21.54 E-value=44 Score=24.04 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=10.4
Q ss_pred ceeecccCCCCC
Q psy779 21 EFYTMADTTKPP 32 (50)
Q Consensus 21 eFY~M~Dl~Kpp 32 (50)
.=|+|.|+.+||
T Consensus 128 ~~y~mrdpfrpP 139 (208)
T KOG4543|consen 128 ARYSMRDPFRPP 139 (208)
T ss_pred ccccccCCCCCC
Confidence 459999999997
No 25
>PF04248 DUF427: Domain of unknown function (DUF427); InterPro: IPR007361 This is a family of uncharacterised proteins.; PDB: 3DJM_D.
Probab=20.66 E-value=55 Score=19.56 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=10.6
Q ss_pred ccCCCCCeeeCCcccccc
Q psy779 26 ADTTKPPVLFSPAEDIDK 43 (50)
Q Consensus 26 ~Dl~Kpp~lFsp~ed~dk 43 (50)
....-||+.+.|.+|++.
T Consensus 20 ~E~~~pp~~Y~P~~dv~~ 37 (95)
T PF04248_consen 20 WETGHPPRYYFPREDVRM 37 (95)
T ss_dssp EETTS--EEEB-GGGB-G
T ss_pred EccCCCCeEEcCHHHcch
Confidence 345569999999999874
Done!