Query psy779
Match_columns 50
No_of_seqs 13 out of 15
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 18:54:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kdx_A CBP; complex (transcrip 62.9 0.81 2.8E-05 27.0 -1.2 20 7-26 49-68 (81)
2 1gpj_A Glutamyl-tRNA reductase 42.0 6.3 0.00022 26.4 0.4 13 15-27 46-58 (404)
3 1x9p_A Penton protein; jellyro 33.3 17 0.00059 27.9 1.6 26 21-46 389-414 (523)
4 1wy3_A Villin; structural prot 30.0 6.2 0.00021 20.0 -1.0 10 16-25 11-20 (35)
5 1und_A Advillin, P92; actin bi 28.9 6.7 0.00023 20.1 -1.0 10 16-25 13-22 (37)
6 1zt3_A Insulin-like growth fac 23.7 34 0.0012 19.4 1.3 18 7-24 25-42 (80)
7 2h7t_A Insulin-like growth fac 22.0 40 0.0014 20.2 1.4 18 7-24 33-50 (107)
8 4ar2_A Penton protein, L2 prot 20.9 38 0.0013 26.0 1.4 26 21-46 377-402 (509)
9 3f4a_A Uncharacterized protein 19.0 25 0.00086 20.9 0.1 24 18-41 15-38 (169)
10 2dsq_G Insulin-like growth fac 18.5 45 0.0015 19.4 1.1 19 7-25 31-49 (94)
No 1
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=62.86 E-value=0.81 Score=27.01 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=16.3
Q ss_pred cccccccCCcccccceeecc
Q psy779 7 KKMDELYHPPCERSEFYTMA 26 (50)
Q Consensus 7 KK~delYH~~ceRSeFY~M~ 26 (50)
|=-.++|.-.++|+|+|+|.
T Consensus 49 kvE~~~ye~A~srdeYY~ll 68 (81)
T 1kdx_A 49 KVEGDMYESANSRDEYYHLL 68 (81)
T ss_dssp HHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHH
Confidence 33357899999999999984
No 2
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=42.04 E-value=6.3 Score=26.45 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.2
Q ss_pred Ccccccceeeccc
Q psy779 15 PPCERSEFYTMAD 27 (50)
Q Consensus 15 ~~ceRSeFY~M~D 27 (50)
+-|+|.|||--.+
T Consensus 46 sTCnR~E~y~~~~ 58 (404)
T 1gpj_A 46 QTSNRVEVYASGA 58 (404)
T ss_dssp EETTEEEEEEESC
T ss_pred ecCCeEEEEEecc
Confidence 5799999996543
No 3
>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A 1vsz_N 3iyn_M 3izo_A
Probab=33.26 E-value=17 Score=27.89 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=22.4
Q ss_pred ceeecccCCCCCeeeCCccccccccc
Q psy779 21 EFYTMADTTKPPVLFSPAEDIDKDAL 46 (50)
Q Consensus 21 eFY~M~Dl~Kpp~lFsp~ed~dk~~~ 46 (50)
-++||-|+.++||-|.+....++++.
T Consensus 389 vYWSLPD~~~~PvtFr~~~~~~~~PV 414 (523)
T 1x9p_A 389 VYWSLPDMMQDPVTFRSTSQISNFPV 414 (523)
T ss_dssp EEECCTTTBCCCTTCCCCCCGGGCCC
T ss_pred eEeeCcccccCCceecCCCccccCce
Confidence 47899999999999999888777664
No 4
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=30.04 E-value=6.2 Score=20.03 Aligned_cols=10 Identities=30% Similarity=0.414 Sum_probs=8.0
Q ss_pred cccccceeec
Q psy779 16 PCERSEFYTM 25 (50)
Q Consensus 16 ~ceRSeFY~M 25 (50)
.+.|+|||.+
T Consensus 11 gmsr~eF~~L 20 (35)
T 1wy3_A 11 GMTRSAFANL 20 (35)
T ss_dssp SSCHHHHHHS
T ss_pred CCCHHHHHHC
Confidence 3789999976
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=28.91 E-value=6.7 Score=20.07 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.1
Q ss_pred cccccceeec
Q psy779 16 PCERSEFYTM 25 (50)
Q Consensus 16 ~ceRSeFY~M 25 (50)
.+.|+|||.+
T Consensus 13 gmsr~eF~~L 22 (37)
T 1und_A 13 GITRGQFAAL 22 (37)
T ss_dssp SSCHHHHHHS
T ss_pred CcCHHHHHHC
Confidence 3789999976
No 6
>1zt3_A Insulin-like growth factor binding protein 1; IGFBP-1, amniotic fluid, C-terminal domain, metal-binding, peptide binding protein; 1.80A {Homo sapiens} PDB: 1zt5_A
Probab=23.73 E-value=34 Score=19.41 Aligned_cols=18 Identities=28% Similarity=0.942 Sum_probs=15.6
Q ss_pred cccccccCCcccccceee
Q psy779 7 KKMDELYHPPCERSEFYT 24 (50)
Q Consensus 7 KK~delYH~~ceRSeFY~ 24 (50)
+++.++|=|+|+..-||.
T Consensus 25 ~~~~~~~iP~Cd~~G~y~ 42 (80)
T 1zt3_A 25 EEISKFYLPNCNKNGFYH 42 (80)
T ss_dssp SCCSEECCCCBCTTSSBC
T ss_pred cccCCcCCCcCCCCCCCc
Confidence 567788999999999985
No 7
>2h7t_A Insulin-like growth factor-binding protein 2; thyroglobulin type 1 fold, protein binding; NMR {Homo sapiens}
Probab=21.97 E-value=40 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=15.9
Q ss_pred cccccccCCcccccceee
Q psy779 7 KKMDELYHPPCERSEFYT 24 (50)
Q Consensus 7 KK~delYH~~ceRSeFY~ 24 (50)
+++.++|-|.|+..-||.
T Consensus 33 ~~~~~~yiP~Cd~~G~Y~ 50 (107)
T 2h7t_A 33 EHLYSLHIPNCDKHGLYN 50 (107)
T ss_dssp SSCCCBCCCCBCTTSCBC
T ss_pred cccCCccCCCCCCCCCCc
Confidence 567899999999999985
No 8
>4ar2_A Penton protein, L2 protein III (penton base); viral protein, capsid protein, dsDNA virus, dodecahedron, VI particle, strand swapping; 3.80A {Human adenovirus 3} PDB: 4aqq_A
Probab=20.87 E-value=38 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.519 Sum_probs=21.2
Q ss_pred ceeecccCCCCCeeeCCccccccccc
Q psy779 21 EFYTMADTTKPPVLFSPAEDIDKDAL 46 (50)
Q Consensus 21 eFY~M~Dl~Kpp~lFsp~ed~dk~~~ 46 (50)
-++||-|+.++|+-|-+....++++.
T Consensus 377 vYWSlPD~~~~PvtF~~~~~~~~~PV 402 (509)
T 4ar2_A 377 VYWSLPDMMQDPVTFRSTRQVNNYPV 402 (509)
T ss_dssp EEECCCSSBCCCTTCCCCCCTTTCCC
T ss_pred EEecCcccccCCceecCCCCcccCce
Confidence 47899999999999988776666553
No 9
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=19.03 E-value=25 Score=20.93 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=8.0
Q ss_pred cccceeecccCCCCCeeeCCcccc
Q psy779 18 ERSEFYTMADTTKPPVLFSPAEDI 41 (50)
Q Consensus 18 eRSeFY~M~Dl~Kpp~lFsp~ed~ 41 (50)
|--|||+|+....+.+-.+.+++.
T Consensus 15 ~~~~~~~m~~~~~~~~~~Is~~eL 38 (169)
T 3f4a_A 15 ENLYFQGMDSYSITNVKYLDPTEL 38 (169)
T ss_dssp -----------CCCSEEEECHHHH
T ss_pred cchhhccchhcccCCCcEeCHHHH
Confidence 445899999988776665555543
No 10
>2dsq_G Insulin-like growth factor-binding protein 1; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.80A {Homo sapiens} SCOP: g.28.1.1
Probab=18.53 E-value=45 Score=19.38 Aligned_cols=19 Identities=26% Similarity=0.868 Sum_probs=14.0
Q ss_pred cccccccCCcccccceeec
Q psy779 7 KKMDELYHPPCERSEFYTM 25 (50)
Q Consensus 7 KK~delYH~~ceRSeFY~M 25 (50)
+++.++|=|.|+..-||.-
T Consensus 31 ~~~~~~~iP~Cd~~G~y~~ 49 (94)
T 2dsq_G 31 EEISKFYLPNCNKNGFYHS 49 (94)
T ss_dssp ---CCBCCCCBCTTSSBCS
T ss_pred ccCCcccCCccCCCCCccC
Confidence 4567889999999999963
Done!