BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy779
MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDALIHPS

High Scoring Gene Products

Symbol, full name Information P value
grh
grainy head
protein from Drosophila melanogaster 3.3e-12
grh-1 gene from Caenorhabditis elegans 0.00011

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy779
        (50 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0259211 - symbol:grh "grainy head" species:7227 "D...   178  3.3e-12   1
WB|WBGene00001707 - symbol:grh-1 species:6239 "Caenorhabd...   103  0.00011   1


>FB|FBgn0259211 [details] [associations]
            symbol:grh "grainy head" species:7227 "Drosophila
            melanogaster" [GO:0003677 "DNA binding" evidence=IDA] [GO:0005634
            "nucleus" evidence=NAS;IDA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEP] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=NAS] [GO:0008362
            "chitin-based embryonic cuticle biosynthetic process" evidence=IMP]
            [GO:0007009 "plasma membrane organization" evidence=IMP]
            [GO:0035159 "regulation of tube length, open tracheal system"
            evidence=IMP] [GO:0007424 "open tracheal system development"
            evidence=IEP;TAS] [GO:0008360 "regulation of cell shape"
            evidence=IMP] [GO:0007426 "tracheal outgrowth, open tracheal
            system" evidence=IMP] [GO:0016044 "cellular membrane organization"
            evidence=TAS] [GO:0007402 "ganglion mother cell fate determination"
            evidence=TAS] [GO:0007419 "ventral cord development" evidence=NAS]
            [GO:0035152 "regulation of tube architecture, open tracheal system"
            evidence=TAS] [GO:0007428 "primary branching, open tracheal system"
            evidence=TAS] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0007399 "nervous system development"
            evidence=IMP] [GO:0003382 "epithelial cell morphogenesis"
            evidence=IMP] [GO:0042803 "protein homodimerization activity"
            evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0007464 "R3/R4 cell fate commitment"
            evidence=IMP] [GO:0061041 "regulation of wound healing"
            evidence=IMP] [GO:0040003 "chitin-based cuticle development"
            evidence=IMP] [GO:0042052 "rhabdomere development" evidence=IMP]
            EMBL:AE013599 GO:GO:0005634 GO:GO:0008360 GO:GO:0008362
            GO:GO:0043565 GO:GO:0007464 GO:GO:0007419 GO:GO:0045944
            GO:GO:0007009 GO:GO:0003700 GO:GO:0006351 GO:GO:0003382
            GO:GO:0042127 GO:GO:0035159 GO:GO:0007402 GO:GO:0042052
            GO:GO:0007428 EMBL:X15657 EMBL:AY052066 EMBL:BT001414 EMBL:BT003182
            EMBL:BT029431 EMBL:AL035312 EMBL:BT011460 PIR:S06206
            RefSeq:NP_001246401.1 RefSeq:NP_476842.2 RefSeq:NP_476843.2
            RefSeq:NP_476844.2 RefSeq:NP_476845.2 RefSeq:NP_725725.1
            RefSeq:NP_725726.1 UniGene:Dm.3595 DIP:DIP-59591N STRING:P13002
            PaxDb:P13002 EnsemblMetazoa:FBtr0299706 GeneID:37038
            KEGG:dme:Dmel_CG42311 CTD:37038 FlyBase:FBgn0259211
            eggNOG:NOG241458 GeneTree:ENSGT00550000074370 InParanoid:P13002
            KO:K09275 OrthoDB:EOG4VHHNF PhylomeDB:P13002 GenomeRNAi:37038
            NextBio:801628 Bgee:P13002 GermOnline:CG5058 GO:GO:0061041
            GO:GO:0007426 InterPro:IPR007604 Pfam:PF04516 Uniprot:P13002
        Length = 1333

 Score = 178 (67.7 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query:     1 MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
             MTATGRKK+DELYHP  +RSEFY M D  KPPVLFSPAED++K
Sbjct:  1090 MTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEK 1132


>WB|WBGene00001707 [details] [associations]
            symbol:grh-1 species:6239 "Caenorhabditis elegans"
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] GO:GO:0009792 GO:GO:0040007
            GO:GO:0002119 GO:GO:0000003 GeneTree:ENSGT00550000074370
            InterPro:IPR007604 Pfam:PF04516 EMBL:AY323527 EMBL:FO081633
            RefSeq:NP_490837.2 UniGene:Cel.16411 ProteinModelPortal:G5EDF0
            EnsemblMetazoa:Y48G8AR.1 GeneID:190048 KEGG:cel:CELE_Y48G8AR.1
            CTD:190048 WormBase:Y48G8AR.1 OMA:ERIMLYV NextBio:944480
            Uniprot:G5EDF0
        Length = 563

 Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 20/38 (52%), Positives = 23/38 (60%)

Query:     5 GRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDID 42
             GRKK D  YH  CERSEFY M +  KP  LF   E+ +
Sbjct:   397 GRKKSDGEYHDQCERSEFYHMRELDKPAALFIAPEEFE 434


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       50        50   0.00091  102 3  11 22  0.42    27
                                                     29  0.41    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  458 (49 KB)
  Total size of DFA:  77 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.64u 0.07s 6.71t   Elapsed:  00:00:11
  Total cpu time:  6.64u 0.07s 6.71t   Elapsed:  00:00:14
  Start:  Thu Aug 15 13:33:50 2013   End:  Thu Aug 15 13:34:04 2013

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