RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy779
         (50 letters)



>gnl|CDD|172952 PRK14477, PRK14477, bifunctional nitrogenase molybdenum-cofactor
           biosynthesis protein NifE/NifN; Provisional.
          Length = 917

 Score = 25.1 bits (55), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 7   KKMDELYHPPCERSEFYTMADTTK 30
           +KM++ Y  P     FY M DT K
Sbjct: 248 RKMEKRYGIPYLEESFYGMTDTAK 271


>gnl|CDD|184150 PRK13569, PRK13569, anthranilate synthase component I; Provisional.
          Length = 506

 Score = 23.8 bits (52), Expect = 4.2
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 9   MDELYHPPCERSEFYTMAD 27
             EL     ER+E Y + D
Sbjct: 330 AKELLADEKERAEHYMLVD 348


>gnl|CDD|202943 pfam04248, DUF427, Domain of unknown function (DUF427). 
          Length = 93

 Score = 22.5 bits (49), Expect = 9.3
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 9/32 (28%)

Query: 24 TMADTTK---------PPVLFSPAEDIDKDAL 46
           +ADTT+         PPV + P ED+  + L
Sbjct: 9  VLADTTRALRLLETSHPPVYYFPPEDVRMELL 40


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0758    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,578,729
Number of extensions: 154724
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 4
Length of query: 50
Length of database: 10,937,602
Length adjustment: 23
Effective length of query: 27
Effective length of database: 9,917,460
Effective search space: 267771420
Effective search space used: 267771420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)