RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy779
         (50 letters)



>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine
          acyltransferase {Escherichia coli, gene lpxA [TaxId:
          562]}
          Length = 262

 Score = 24.4 bits (52), Expect = 0.62
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 41 IDKDALIHPS 50
          IDK A +HP+
Sbjct: 2  IDKSAFVHPT 11


>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon
          Methanosarcina thermophila [TaxId: 2210]}
          Length = 210

 Score = 23.1 bits (48), Expect = 2.0
 Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 3/23 (13%)

Query: 31 PPVLFSPAED---IDKDALIHPS 50
          P   ++P      ID  A I P 
Sbjct: 12 PVTPWNPEPSAPVIDPTAYIDPQ 34


>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
           (Candida albicans) [TaxId: 5476]}
          Length = 227

 Score = 21.7 bits (46), Expect = 5.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 22  FYTMADTTKPPVLFSPAEDIDKDALI 47
           FY  +D+ + P       ++  DALI
Sbjct: 132 FYYASDSFEKPNYKKRLNELITDALI 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 192,527
Number of extensions: 5917
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 3
Length of query: 50
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 28
Effective length of database: 2,105,536
Effective search space: 58955008
Effective search space used: 58955008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)