Query psy7790
Match_columns 367
No_of_seqs 436 out of 2827
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 18:55:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0341|consensus 100.0 2.4E-74 5.3E-79 514.4 19.6 351 3-365 17-505 (610)
2 KOG0330|consensus 100.0 2.6E-55 5.7E-60 392.8 15.8 299 61-365 54-384 (476)
3 KOG0331|consensus 100.0 2.4E-53 5.2E-58 402.7 17.7 293 68-365 91-425 (519)
4 KOG0328|consensus 100.0 1E-49 2.2E-54 343.3 21.0 298 61-365 20-350 (400)
5 COG0513 SrmB Superfamily II DN 100.0 4.2E-49 9E-54 387.1 22.9 293 68-365 29-357 (513)
6 KOG0333|consensus 100.0 1.5E-47 3.2E-52 354.2 21.5 294 66-365 243-601 (673)
7 KOG0338|consensus 100.0 2.6E-48 5.6E-53 358.0 12.6 292 68-365 181-510 (691)
8 KOG0340|consensus 100.0 2.9E-47 6.3E-52 337.5 15.5 295 67-365 6-338 (442)
9 KOG0343|consensus 100.0 8.9E-47 1.9E-51 350.7 18.8 294 68-365 69-399 (758)
10 KOG0326|consensus 100.0 1.6E-46 3.4E-51 328.6 12.5 290 68-365 85-406 (459)
11 KOG0345|consensus 100.0 1E-45 2.3E-50 338.2 16.8 293 69-365 5-341 (567)
12 KOG0342|consensus 100.0 1E-45 2.2E-50 340.3 15.3 294 68-365 82-414 (543)
13 KOG0347|consensus 100.0 6E-45 1.3E-49 338.5 10.8 291 69-365 182-547 (731)
14 PTZ00110 helicase; Provisional 100.0 2E-42 4.3E-47 342.9 22.2 296 64-365 126-461 (545)
15 PRK04837 ATP-dependent RNA hel 100.0 4.6E-42 1E-46 332.6 23.4 292 67-365 7-339 (423)
16 PRK04537 ATP-dependent RNA hel 100.0 5.3E-42 1.1E-46 341.0 22.3 292 68-365 9-341 (572)
17 KOG0335|consensus 100.0 9E-43 2E-47 325.5 14.7 290 69-365 75-421 (482)
18 PRK11776 ATP-dependent RNA hel 100.0 1.5E-41 3.3E-46 332.4 23.2 290 68-365 4-326 (460)
19 PRK11634 ATP-dependent RNA hel 100.0 1.8E-41 4E-46 339.2 22.9 292 67-365 5-329 (629)
20 PRK10590 ATP-dependent RNA hel 100.0 3E-41 6.6E-46 329.2 22.7 290 69-365 2-329 (456)
21 KOG0336|consensus 100.0 6.4E-42 1.4E-46 308.4 15.8 292 68-365 219-549 (629)
22 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-41 1.3E-45 331.3 23.0 293 65-365 118-452 (518)
23 KOG0348|consensus 100.0 3E-41 6.4E-46 313.0 12.8 294 68-365 136-531 (708)
24 KOG0327|consensus 100.0 1.2E-40 2.7E-45 299.1 16.2 293 67-367 25-349 (397)
25 PRK11192 ATP-dependent RNA hel 100.0 3.1E-39 6.6E-44 314.1 22.8 290 69-365 2-329 (434)
26 KOG0339|consensus 100.0 7.3E-40 1.6E-44 302.0 16.0 293 66-365 221-552 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 2E-38 4.2E-43 311.4 23.0 292 67-365 86-419 (475)
28 KOG0346|consensus 100.0 2.7E-39 5.9E-44 293.8 13.9 293 68-365 19-387 (569)
29 KOG0334|consensus 100.0 3.5E-39 7.6E-44 321.0 14.5 295 65-365 362-697 (997)
30 KOG0332|consensus 100.0 1.6E-38 3.4E-43 283.6 15.2 290 66-361 88-410 (477)
31 KOG4284|consensus 100.0 5.6E-37 1.2E-41 289.8 17.6 295 64-365 21-356 (980)
32 PTZ00424 helicase 45; Provisio 100.0 2.9E-35 6.4E-40 283.7 23.8 292 67-365 27-351 (401)
33 KOG0337|consensus 100.0 2.5E-37 5.4E-42 279.8 7.8 291 68-365 21-345 (529)
34 KOG0344|consensus 100.0 7.7E-34 1.7E-38 267.5 15.1 291 68-365 132-472 (593)
35 TIGR03817 DECH_helic helicase/ 100.0 2.2E-33 4.8E-38 286.2 17.7 279 75-365 21-363 (742)
36 PLN03137 ATP-dependent DNA hel 100.0 2.2E-31 4.7E-36 271.7 21.4 280 72-365 441-764 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 3.7E-31 8.1E-36 259.1 14.2 263 88-365 10-310 (470)
38 PRK09401 reverse gyrase; Revie 100.0 1.3E-30 2.8E-35 274.6 18.7 255 87-360 78-410 (1176)
39 PRK11057 ATP-dependent DNA hel 100.0 2.6E-30 5.6E-35 259.8 17.6 261 88-365 24-320 (607)
40 KOG0350|consensus 100.0 2.5E-30 5.3E-35 238.9 13.1 270 95-365 161-517 (620)
41 COG0514 RecQ Superfamily II DN 100.0 1.5E-29 3.3E-34 244.8 16.2 260 98-365 22-314 (590)
42 TIGR01389 recQ ATP-dependent D 100.0 1.8E-29 4E-34 254.0 15.7 263 88-365 12-308 (591)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.8E-28 4E-33 246.7 20.3 260 87-360 13-364 (844)
44 KOG0329|consensus 100.0 2.5E-29 5.4E-34 214.5 9.5 257 68-365 42-332 (387)
45 TIGR01054 rgy reverse gyrase. 100.0 1.9E-28 4.2E-33 258.5 17.6 257 86-361 75-410 (1171)
46 PRK14701 reverse gyrase; Provi 100.0 5E-28 1.1E-32 260.2 18.2 263 86-365 76-420 (1638)
47 PRK13767 ATP-dependent helicas 100.0 3.6E-28 7.8E-33 252.6 16.6 282 75-365 18-374 (876)
48 PHA02653 RNA helicase NPH-II; 99.9 8.5E-27 1.8E-31 233.1 17.8 251 91-358 162-473 (675)
49 PRK10689 transcription-repair 99.9 1.9E-26 4.2E-31 242.7 19.2 259 86-359 597-894 (1147)
50 PRK11664 ATP-dependent RNA hel 99.9 5.4E-26 1.2E-30 232.8 20.6 253 99-362 11-296 (812)
51 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.1E-25 2.5E-30 230.0 21.2 253 99-362 8-293 (819)
52 TIGR00580 mfd transcription-re 99.9 1.6E-25 3.6E-30 231.1 20.0 259 87-360 449-741 (926)
53 PRK02362 ski2-like helicase; P 99.9 4.2E-26 9.1E-31 234.7 13.4 285 69-365 2-372 (737)
54 PRK10917 ATP-dependent DNA hel 99.9 2.5E-24 5.4E-29 218.9 19.0 261 86-361 258-561 (681)
55 PRK00254 ski2-like helicase; P 99.9 1E-24 2.2E-29 223.9 15.9 275 69-355 2-345 (720)
56 PRK09751 putative ATP-dependen 99.9 1.4E-24 3.1E-29 230.2 16.0 188 171-365 104-361 (1490)
57 KOG0349|consensus 99.9 3.7E-25 7.9E-30 201.6 7.3 192 171-365 344-592 (725)
58 COG1201 Lhr Lhr-like helicases 99.9 2.7E-23 5.8E-28 208.5 19.5 278 75-364 8-337 (814)
59 PRK12898 secA preprotein trans 99.9 3.8E-23 8.2E-28 204.2 17.9 143 217-365 410-563 (656)
60 TIGR00643 recG ATP-dependent D 99.9 5E-23 1.1E-27 208.0 19.0 261 84-361 230-538 (630)
61 KOG0351|consensus 99.9 1.8E-23 3.9E-28 213.6 15.6 262 96-365 267-569 (941)
62 PRK01172 ski2-like helicase; P 99.9 5.6E-23 1.2E-27 210.0 16.9 278 69-360 2-339 (674)
63 TIGR01587 cas3_core CRISPR-ass 99.9 2.1E-22 4.5E-27 191.3 13.2 152 205-360 144-306 (358)
64 PRK11131 ATP-dependent RNA hel 99.9 1.5E-21 3.4E-26 204.0 18.5 246 98-358 79-364 (1294)
65 TIGR03158 cas3_cyano CRISPR-as 99.9 2.1E-21 4.5E-26 183.5 17.3 147 209-365 175-349 (357)
66 PRK09200 preprotein translocas 99.9 1.5E-21 3.2E-26 196.8 14.3 142 217-365 365-518 (790)
67 COG1202 Superfamily II helicas 99.9 2.4E-21 5.1E-26 182.5 13.4 272 67-352 193-511 (830)
68 PHA02558 uvsW UvsW helicase; P 99.9 5.9E-21 1.3E-25 188.3 16.6 267 88-365 113-429 (501)
69 KOG0353|consensus 99.9 3.5E-21 7.6E-26 173.2 11.8 263 97-365 98-401 (695)
70 KOG0352|consensus 99.8 1E-20 2.2E-25 172.6 10.3 256 98-365 25-339 (641)
71 TIGR01967 DEAH_box_HrpA ATP-de 99.8 2E-19 4.4E-24 188.9 19.3 251 98-361 72-360 (1283)
72 COG1205 Distinct helicase fami 99.8 1E-19 2.2E-24 187.1 15.0 267 94-365 71-399 (851)
73 TIGR00963 secA preprotein tran 99.8 2.6E-19 5.6E-24 178.2 14.9 143 217-365 342-494 (745)
74 TIGR03714 secA2 accessory Sec 99.8 5.4E-19 1.2E-23 176.9 14.2 140 217-362 361-512 (762)
75 PRK13766 Hef nuclease; Provisi 99.8 1.4E-17 3.1E-22 173.2 18.7 97 269-365 348-457 (773)
76 KOG0354|consensus 99.7 3.4E-17 7.5E-22 161.3 13.8 82 282-363 414-506 (746)
77 COG1111 MPH1 ERCC4-like helica 99.7 2.6E-15 5.6E-20 140.8 19.5 82 282-363 367-457 (542)
78 PRK05580 primosome assembly pr 99.7 3.3E-16 7.1E-21 159.2 13.5 265 97-366 148-517 (679)
79 PRK04914 ATP-dependent helicas 99.7 1.6E-16 3.6E-21 164.2 11.4 99 267-365 478-580 (956)
80 PRK09694 helicase Cas3; Provis 99.6 1.8E-14 3.8E-19 148.3 21.7 81 280-361 559-650 (878)
81 COG1204 Superfamily II helicas 99.6 3E-15 6.4E-20 152.4 13.9 255 98-356 36-364 (766)
82 TIGR00603 rad25 DNA repair hel 99.6 5.9E-15 1.3E-19 148.0 14.6 93 268-365 480-577 (732)
83 PRK13104 secA preprotein trans 99.6 1.4E-15 3E-20 153.9 9.9 125 218-348 382-509 (896)
84 PRK12904 preprotein translocas 99.6 1.1E-14 2.4E-19 147.1 13.1 126 217-348 367-495 (830)
85 cd00079 HELICc Helicase superf 99.6 4.7E-14 1E-18 113.8 13.5 99 267-365 11-112 (131)
86 COG4098 comFA Superfamily II D 99.6 1.9E-13 4.1E-18 122.4 18.3 253 91-355 99-379 (441)
87 TIGR00631 uvrb excinuclease AB 99.6 8.1E-14 1.8E-18 140.4 15.8 99 267-365 425-531 (655)
88 TIGR00595 priA primosomal prot 99.5 2.9E-14 6.2E-19 140.2 11.2 72 294-365 271-348 (505)
89 COG1061 SSL2 DNA or RNA helica 99.5 1.8E-13 3.9E-18 132.8 15.7 94 271-365 271-366 (442)
90 PF00271 Helicase_C: Helicase 99.5 2.4E-14 5.1E-19 105.0 6.5 66 300-365 2-67 (78)
91 PF06862 DUF1253: Protein of u 99.5 5.9E-13 1.3E-17 126.4 17.7 151 216-366 216-387 (442)
92 PRK05298 excinuclease ABC subu 99.5 2.6E-13 5.6E-18 137.5 14.6 98 268-365 430-535 (652)
93 PRK12906 secA preprotein trans 99.5 1.8E-13 4E-18 137.9 11.5 143 216-365 376-530 (796)
94 PRK13107 preprotein translocas 99.5 1.6E-13 3.5E-18 138.7 9.3 125 218-348 387-514 (908)
95 COG1643 HrpA HrpA-like helicas 99.4 4.6E-12 1E-16 129.0 17.9 253 98-361 55-343 (845)
96 COG1200 RecG RecG-like helicas 99.4 2E-11 4.3E-16 119.4 17.7 148 206-358 401-560 (677)
97 PRK12900 secA preprotein trans 99.4 2.8E-12 6E-17 130.5 11.6 144 216-365 534-688 (1025)
98 COG1110 Reverse gyrase [DNA re 99.4 5.4E-12 1.2E-16 127.1 12.0 133 214-360 275-417 (1187)
99 COG1197 Mfd Transcription-repa 99.4 3.1E-11 6.8E-16 124.3 17.7 146 207-357 734-881 (1139)
100 KOG0952|consensus 99.3 9.3E-12 2E-16 125.4 13.2 257 95-359 112-449 (1230)
101 KOG4150|consensus 99.3 6.1E-11 1.3E-15 112.6 17.2 262 97-365 290-617 (1034)
102 cd00268 DEADc DEAD-box helicas 99.3 3.5E-12 7.6E-17 111.2 7.9 169 70-243 1-202 (203)
103 KOG0951|consensus 99.3 3.2E-11 6.9E-16 123.3 15.3 254 94-354 310-656 (1674)
104 smart00490 HELICc helicase sup 99.3 7.8E-12 1.7E-16 92.0 7.6 70 296-365 2-71 (82)
105 KOG0947|consensus 99.3 4.6E-11 1E-15 119.3 14.1 245 96-354 300-679 (1248)
106 KOG0922|consensus 99.3 2.4E-10 5.1E-15 111.1 17.1 247 98-358 56-343 (674)
107 COG0556 UvrB Helicase subunit 99.2 1E-10 2.2E-15 110.7 13.4 168 174-359 354-524 (663)
108 PTZ00110 helicase; Provisional 99.1 6.5E-10 1.4E-14 111.0 14.2 182 131-358 94-286 (545)
109 COG1203 CRISPR-associated heli 99.1 7E-10 1.5E-14 114.3 14.6 144 214-359 369-521 (733)
110 KOG2340|consensus 99.1 1.1E-10 2.3E-15 110.2 7.5 164 203-366 433-639 (698)
111 KOG0924|consensus 99.1 1.5E-09 3.2E-14 105.4 15.0 248 99-360 362-652 (1042)
112 COG4581 Superfamily II RNA hel 99.1 2.2E-09 4.8E-14 110.7 16.4 249 96-357 122-495 (1041)
113 KOG0948|consensus 99.1 8.8E-10 1.9E-14 107.9 12.2 248 94-354 130-495 (1041)
114 PLN00206 DEAD-box ATP-dependen 99.1 2E-09 4.3E-14 107.1 13.8 178 137-358 92-279 (518)
115 KOG0923|consensus 99.1 3.9E-09 8.4E-14 102.2 14.8 248 99-360 271-561 (902)
116 KOG0339|consensus 99.0 2.1E-09 4.6E-14 101.1 12.0 178 134-358 191-379 (731)
117 PRK12899 secA preprotein trans 99.0 1.4E-09 3E-14 110.9 11.7 97 262-361 546-654 (970)
118 PLN03142 Probable chromatin-re 99.0 1.1E-09 2.5E-14 114.4 10.6 99 266-364 469-573 (1033)
119 KOG0334|consensus 99.0 2.7E-09 5.8E-14 108.4 11.2 168 125-339 322-496 (997)
120 KOG0950|consensus 98.9 5.1E-09 1.1E-13 105.4 10.5 76 281-356 460-573 (1008)
121 KOG0341|consensus 98.9 5.1E-10 1.1E-14 102.0 2.7 116 65-184 167-320 (610)
122 KOG0920|consensus 98.9 1.7E-08 3.7E-13 103.2 13.9 257 97-359 177-498 (924)
123 KOG0333|consensus 98.9 2E-09 4.4E-14 101.6 6.4 167 129-339 209-380 (673)
124 COG0513 SrmB Superfamily II DN 98.9 3E-08 6.5E-13 98.3 13.0 142 166-357 29-182 (513)
125 KOG0347|consensus 98.8 2.3E-08 5E-13 95.2 10.3 139 162-339 177-321 (731)
126 KOG0926|consensus 98.8 5E-08 1.1E-12 96.5 12.5 51 308-358 607-657 (1172)
127 KOG0336|consensus 98.7 1.9E-07 4.1E-12 86.1 13.4 186 126-356 171-374 (629)
128 TIGR01407 dinG_rel DnaQ family 98.7 1.3E-07 2.8E-12 99.5 14.2 87 272-361 665-757 (850)
129 KOG0338|consensus 98.7 2.7E-08 5.8E-13 93.9 7.3 146 165-358 180-336 (691)
130 KOG0331|consensus 98.7 1.1E-07 2.4E-12 91.8 10.5 145 167-357 92-247 (519)
131 PRK11448 hsdR type I restricti 98.7 8.2E-08 1.8E-12 102.4 10.4 83 281-365 698-790 (1123)
132 PF00270 DEAD: DEAD/DEAH box h 98.7 6.3E-09 1.4E-13 87.7 1.6 135 97-232 3-169 (169)
133 KOG0330|consensus 98.6 6E-07 1.3E-11 82.4 12.3 142 163-356 58-211 (476)
134 PRK04837 ATP-dependent RNA hel 98.6 4.3E-07 9.2E-12 88.4 12.2 149 166-358 8-166 (423)
135 PRK11634 ATP-dependent RNA hel 98.6 6.2E-07 1.3E-11 90.9 12.5 142 165-357 5-157 (629)
136 PRK11776 ATP-dependent RNA hel 98.6 5.9E-07 1.3E-11 88.4 11.9 140 166-358 4-156 (460)
137 PRK11192 ATP-dependent RNA hel 98.6 6.7E-07 1.5E-11 87.3 12.2 145 167-358 2-156 (434)
138 COG1198 PriA Primosomal protei 98.5 1E-06 2.2E-11 89.2 12.9 64 295-358 494-561 (730)
139 PRK04537 ATP-dependent RNA hel 98.5 1.1E-06 2.4E-11 88.3 13.2 149 166-358 9-168 (572)
140 PRK10590 ATP-dependent RNA hel 98.5 9.6E-07 2.1E-11 86.7 12.5 147 167-358 2-158 (456)
141 KOG0925|consensus 98.5 2.3E-06 4.9E-11 80.8 13.0 271 67-360 24-342 (699)
142 KOG0340|consensus 98.3 3.1E-06 6.8E-11 76.9 9.0 123 164-339 5-133 (442)
143 PRK01297 ATP-dependent RNA hel 98.3 1.9E-05 4.2E-10 77.9 14.3 150 165-357 86-245 (475)
144 KOG0385|consensus 98.2 1E-05 2.2E-10 80.3 10.9 129 233-363 441-572 (971)
145 KOG0335|consensus 98.2 1.1E-05 2.5E-10 77.0 10.3 161 153-357 61-234 (482)
146 PRK08074 bifunctional ATP-depe 98.2 1.5E-05 3.2E-10 84.7 12.3 88 273-360 744-835 (928)
147 KOG0329|consensus 98.2 4.2E-06 9.2E-11 72.8 6.6 146 162-358 38-194 (387)
148 KOG0387|consensus 98.1 1.8E-05 3.9E-10 78.9 10.7 100 265-364 527-632 (923)
149 KOG0390|consensus 98.1 2E-05 4.4E-10 79.8 10.5 97 267-363 577-680 (776)
150 PRK12903 secA preprotein trans 98.1 4.1E-05 9E-10 78.1 12.5 139 216-361 362-512 (925)
151 PRK11747 dinG ATP-dependent DN 98.1 7.7E-05 1.7E-09 76.8 14.1 84 273-361 527-617 (697)
152 KOG0345|consensus 98.0 2.7E-05 5.9E-10 73.4 9.6 148 166-358 4-166 (567)
153 PRK07246 bifunctional ATP-depe 98.0 8.9E-05 1.9E-09 77.6 14.3 80 279-361 645-726 (820)
154 PF13307 Helicase_C_2: Helicas 98.0 5.7E-06 1.2E-10 69.7 4.3 87 273-361 1-93 (167)
155 cd00268 DEADc DEAD-box helicas 98.0 0.00014 3.1E-09 63.1 13.2 138 168-358 1-152 (203)
156 TIGR00604 rad3 DNA repair heli 98.0 0.00011 2.3E-09 76.1 14.4 88 273-360 514-615 (705)
157 KOG0391|consensus 98.0 4.2E-05 9.1E-10 79.1 10.6 104 260-363 1255-1360(1958)
158 KOG0384|consensus 98.0 2.4E-05 5.1E-10 81.4 8.9 93 271-363 689-784 (1373)
159 COG1199 DinG Rad3-related DNA 98.0 6.7E-05 1.5E-09 77.2 12.1 89 270-361 468-560 (654)
160 TIGR03817 DECH_helic helicase/ 98.0 9.7E-05 2.1E-09 76.6 12.8 134 172-358 20-166 (742)
161 KOG0953|consensus 97.9 3E-05 6.5E-10 74.6 8.2 86 272-359 347-436 (700)
162 KOG0346|consensus 97.9 1.8E-05 3.8E-10 74.1 6.2 130 165-339 18-153 (569)
163 KOG0337|consensus 97.9 7.7E-05 1.7E-09 69.5 10.2 139 165-356 20-171 (529)
164 COG4096 HsdR Type I site-speci 97.9 9.5E-05 2.1E-09 74.6 11.3 75 282-358 427-508 (875)
165 TIGR03117 cas_csf4 CRISPR-asso 97.9 0.00031 6.8E-09 70.8 14.5 92 269-362 458-563 (636)
166 PTZ00424 helicase 45; Provisio 97.7 0.00048 1E-08 66.5 13.2 142 164-358 26-179 (401)
167 smart00487 DEXDc DEAD-like hel 97.7 0.00013 2.9E-09 62.2 7.9 154 88-247 7-192 (201)
168 KOG1123|consensus 97.7 0.00073 1.6E-08 64.5 12.9 81 272-357 534-615 (776)
169 KOG0343|consensus 97.7 4.8E-05 1E-09 73.1 4.6 146 163-356 66-222 (758)
170 KOG0392|consensus 97.6 0.00033 7.3E-09 73.1 10.4 96 267-362 1309-1426(1549)
171 CHL00122 secA preprotein trans 97.6 0.00053 1.2E-08 70.5 11.6 127 216-348 360-491 (870)
172 KOG0348|consensus 97.6 0.0005 1.1E-08 66.1 10.2 146 165-357 135-295 (708)
173 PRK00254 ski2-like helicase; P 97.6 0.00088 1.9E-08 69.7 12.9 137 167-358 2-147 (720)
174 KOG0344|consensus 97.6 6.1E-05 1.3E-09 72.9 3.9 166 143-356 109-295 (593)
175 PRK12326 preprotein translocas 97.6 0.0012 2.7E-08 66.6 13.1 126 216-348 363-492 (764)
176 PRK12902 secA preprotein trans 97.5 0.0008 1.7E-08 69.2 11.6 127 216-348 375-506 (939)
177 KOG0388|consensus 97.5 0.0004 8.6E-09 68.8 8.7 95 269-363 1032-1127(1185)
178 PRK10917 ATP-dependent DNA hel 97.5 0.00078 1.7E-08 69.4 11.5 77 281-357 310-391 (681)
179 KOG0326|consensus 97.5 0.00027 5.8E-09 63.8 6.4 138 166-356 85-234 (459)
180 TIGR00643 recG ATP-dependent D 97.5 0.00098 2.1E-08 68.2 11.4 77 281-357 284-365 (630)
181 KOG0389|consensus 97.4 0.00087 1.9E-08 67.3 10.1 96 268-363 761-861 (941)
182 TIGR00580 mfd transcription-re 97.4 0.0012 2.6E-08 69.7 11.5 77 281-357 500-581 (926)
183 PRK02362 ski2-like helicase; P 97.4 0.0014 3E-08 68.4 12.0 136 167-358 2-146 (737)
184 PRK14701 reverse gyrase; Provi 97.4 0.0017 3.7E-08 72.2 13.0 114 176-340 67-187 (1638)
185 COG0553 HepA Superfamily II DN 97.4 0.001 2.2E-08 70.7 11.0 97 268-364 692-796 (866)
186 PRK13103 secA preprotein trans 97.4 0.0008 1.7E-08 69.5 9.2 126 216-348 385-514 (913)
187 TIGR00614 recQ_fam ATP-depende 97.3 0.0025 5.5E-08 62.9 12.1 123 183-358 6-136 (470)
188 PRK10689 transcription-repair 97.3 0.0032 6.9E-08 68.2 13.3 77 281-357 649-730 (1147)
189 KOG0328|consensus 97.2 0.01 2.2E-07 52.9 13.0 176 162-340 23-234 (400)
190 TIGR01054 rgy reverse gyrase. 97.1 0.0048 1E-07 67.0 12.2 133 175-358 65-208 (1171)
191 PF02399 Herpes_ori_bp: Origin 97.1 0.0082 1.8E-07 61.4 12.6 64 281-350 282-345 (824)
192 KOG1000|consensus 97.1 0.0032 6.8E-08 60.3 8.9 96 268-363 472-576 (689)
193 PRK05580 primosome assembly pr 97.0 0.0056 1.2E-07 63.1 11.3 78 280-358 189-267 (679)
194 KOG4284|consensus 97.0 0.0025 5.3E-08 62.9 7.9 144 162-357 21-175 (980)
195 TIGR01389 recQ ATP-dependent D 97.0 0.0078 1.7E-07 61.3 12.1 121 184-357 9-135 (591)
196 PRK12901 secA preprotein trans 97.0 0.0056 1.2E-07 64.1 10.9 138 217-361 565-714 (1112)
197 TIGR00595 priA primosomal prot 96.9 0.0083 1.8E-07 59.6 10.7 79 279-358 23-102 (505)
198 KOG0342|consensus 96.8 0.0087 1.9E-07 57.2 9.4 127 166-339 82-213 (543)
199 PRK11057 ATP-dependent DNA hel 96.7 0.021 4.5E-07 58.3 12.7 110 177-339 13-123 (607)
200 TIGR00348 hsdR type I site-spe 96.7 0.01 2.2E-07 61.1 10.1 78 281-358 514-618 (667)
201 PLN03137 ATP-dependent DNA hel 96.5 0.031 6.7E-07 59.6 12.4 112 175-339 446-560 (1195)
202 PRK13767 ATP-dependent helicas 96.5 0.015 3.1E-07 61.9 10.0 140 173-358 18-181 (876)
203 smart00492 HELICc3 helicase su 96.4 0.013 2.8E-07 47.7 7.2 67 295-361 5-80 (141)
204 PRK14873 primosome assembly pr 96.4 0.025 5.5E-07 57.9 10.7 90 267-357 171-265 (665)
205 PRK01172 ski2-like helicase; P 96.3 0.041 8.8E-07 57.0 11.8 134 167-358 2-144 (674)
206 PRK09401 reverse gyrase; Revie 96.3 0.053 1.2E-06 59.1 12.9 123 185-358 78-210 (1176)
207 KOG0951|consensus 96.3 0.019 4E-07 60.9 8.9 139 205-347 1279-1446(1674)
208 TIGR02562 cas3_yersinia CRISPR 96.1 0.036 7.8E-07 58.5 10.2 71 284-355 759-861 (1110)
209 KOG0327|consensus 96.1 0.016 3.5E-07 53.8 6.7 126 164-339 24-153 (397)
210 KOG1015|consensus 96.0 0.024 5.2E-07 58.5 8.0 96 268-363 1126-1250(1567)
211 KOG1002|consensus 96.0 0.025 5.4E-07 54.3 7.5 97 267-363 619-722 (791)
212 smart00491 HELICc2 helicase su 95.9 0.023 4.9E-07 46.4 6.0 68 294-361 4-81 (142)
213 KOG0386|consensus 95.9 0.022 4.7E-07 59.0 7.0 96 268-363 713-811 (1157)
214 COG1110 Reverse gyrase [DNA re 95.7 0.031 6.8E-07 58.2 7.2 72 270-341 113-191 (1187)
215 COG1198 PriA Primosomal protei 95.6 0.027 5.8E-07 57.8 6.8 92 264-356 225-320 (730)
216 TIGR02621 cas3_GSU0051 CRISPR- 95.4 0.088 1.9E-06 54.9 9.6 104 184-339 12-143 (844)
217 KOG0949|consensus 95.4 0.017 3.8E-07 59.6 4.3 47 308-355 965-1011(1330)
218 PRK12899 secA preprotein trans 95.1 0.15 3.2E-06 53.5 10.0 114 170-339 66-191 (970)
219 COG1201 Lhr Lhr-like helicases 94.9 0.081 1.8E-06 54.9 7.5 139 172-357 7-157 (814)
220 COG0653 SecA Preprotein transl 94.7 0.12 2.6E-06 53.4 8.1 84 262-348 407-494 (822)
221 TIGR00596 rad1 DNA repair prot 94.1 0.073 1.6E-06 55.6 5.3 38 266-303 268-317 (814)
222 COG1197 Mfd Transcription-repa 94.1 0.21 4.5E-06 53.3 8.5 75 281-355 643-722 (1139)
223 KOG0332|consensus 94.0 0.11 2.5E-06 48.2 5.6 40 163-202 87-126 (477)
224 COG1200 RecG RecG-like helicas 93.9 0.46 1E-05 47.9 10.0 90 267-356 295-391 (677)
225 KOG4439|consensus 93.8 0.31 6.8E-06 49.1 8.5 98 266-363 727-831 (901)
226 TIGR01407 dinG_rel DnaQ family 93.6 0.062 1.3E-06 57.1 3.7 69 79-147 235-307 (850)
227 COG1111 MPH1 ERCC4-like helica 93.5 0.29 6.2E-06 47.5 7.6 88 273-365 50-147 (542)
228 PF04851 ResIII: Type III rest 93.5 0.029 6.3E-07 47.2 0.8 56 96-152 6-70 (184)
229 PF00270 DEAD: DEAD/DEAH box h 93.1 0.63 1.4E-05 38.5 8.4 81 273-357 35-127 (169)
230 smart00489 DEXDc3 DEAD-like he 92.9 0.045 9.7E-07 50.4 1.3 38 91-128 10-49 (289)
231 smart00488 DEXDc2 DEAD-like he 92.9 0.045 9.7E-07 50.4 1.3 38 91-128 10-49 (289)
232 TIGR03117 cas_csf4 CRISPR-asso 92.8 0.076 1.7E-06 53.9 2.8 51 99-149 7-63 (636)
233 PRK07246 bifunctional ATP-depe 92.7 0.079 1.7E-06 55.9 2.8 49 100-148 256-307 (820)
234 KOG0350|consensus 92.6 0.72 1.6E-05 44.7 8.8 141 174-356 145-302 (620)
235 PRK13766 Hef nuclease; Provisi 92.5 0.84 1.8E-05 48.1 10.2 79 276-359 53-141 (773)
236 KOG0921|consensus 91.8 0.61 1.3E-05 48.4 7.6 78 282-359 644-728 (1282)
237 PRK12898 secA preprotein trans 91.5 1.3 2.8E-05 45.3 9.6 53 281-339 144-200 (656)
238 PRK09751 putative ATP-dependen 90.4 1.5 3.3E-05 48.9 9.7 73 282-358 38-133 (1490)
239 COG4889 Predicted helicase [Ge 89.7 0.16 3.5E-06 52.4 1.5 81 283-363 462-560 (1518)
240 COG1205 Distinct helicase fami 88.2 5 0.00011 42.7 11.2 115 173-339 55-175 (851)
241 COG3973 Superfamily I DNA and 86.9 32 0.00069 34.8 14.9 112 226-359 601-717 (747)
242 TIGR00963 secA preprotein tran 86.3 3.9 8.5E-05 42.4 8.9 70 281-356 97-183 (745)
243 KOG1133|consensus 86.2 20 0.00044 36.6 13.3 91 268-361 612-721 (821)
244 PF02562 PhoH: PhoH-like prote 85.6 0.55 1.2E-05 40.7 2.1 28 96-123 7-34 (205)
245 PF13086 AAA_11: AAA domain; P 85.2 0.45 9.7E-06 41.6 1.4 28 95-122 3-31 (236)
246 cd01524 RHOD_Pyr_redox Member 84.1 1.6 3.5E-05 32.1 3.9 36 281-316 51-86 (90)
247 COG1202 Superfamily II helicas 84.1 3.6 7.8E-05 41.0 7.0 50 168-228 196-245 (830)
248 KOG0389|consensus 84.1 5.8 0.00013 40.9 8.6 68 272-342 437-510 (941)
249 cd01370 KISc_KIP3_like Kinesin 83.4 1.1 2.3E-05 42.3 3.2 28 98-125 76-105 (338)
250 cd01363 Motor_domain Myosin an 83.2 0.69 1.5E-05 39.5 1.7 26 100-125 14-41 (186)
251 PRK08074 bifunctional ATP-depe 82.9 0.92 2E-05 48.8 2.9 31 99-129 267-299 (928)
252 COG0514 RecQ Superfamily II DN 82.8 3.7 8E-05 41.4 6.8 59 281-339 57-115 (590)
253 PF13604 AAA_30: AAA domain; P 82.7 0.61 1.3E-05 40.2 1.2 59 95-153 3-67 (196)
254 cd01368 KISc_KIF23_like Kinesi 82.3 0.76 1.6E-05 43.4 1.8 27 99-125 78-106 (345)
255 cd01367 KISc_KIF2_like Kinesin 82.2 1.3 2.8E-05 41.4 3.3 28 98-125 73-102 (322)
256 cd00046 DEXDc DEAD-like helica 81.7 12 0.00027 28.8 8.6 72 281-356 30-110 (144)
257 cd01373 KISc_KLP2_like Kinesin 81.5 1.4 3E-05 41.5 3.2 27 99-125 64-92 (337)
258 TIGR00604 rad3 DNA repair heli 81.5 1.1 2.3E-05 46.9 2.6 31 92-122 13-43 (705)
259 cd01534 4RHOD_Repeat_3 Member 81.1 5.7 0.00012 29.4 5.9 36 281-316 56-91 (95)
260 cd01365 KISc_KIF1A_KIF1B Kines 80.5 0.97 2.1E-05 42.9 1.8 27 99-125 78-106 (356)
261 cd01375 KISc_KIF9_like Kinesin 79.7 1.1 2.4E-05 42.1 1.9 27 99-125 70-98 (334)
262 cd01376 KISc_KID_like Kinesin 79.6 1.7 3.7E-05 40.5 3.1 28 98-125 69-98 (319)
263 PRK13104 secA preprotein trans 79.3 6.9 0.00015 41.4 7.6 53 281-339 123-179 (896)
264 cd06533 Glyco_transf_WecG_TagA 78.6 22 0.00047 29.8 9.3 75 263-337 28-105 (171)
265 cd01523 RHOD_Lact_B Member of 78.5 2.6 5.6E-05 31.6 3.3 36 281-316 61-96 (100)
266 PF00580 UvrD-helicase: UvrD/R 78.1 1 2.2E-05 41.4 1.1 54 96-151 3-64 (315)
267 TIGR00631 uvrb excinuclease AB 78.0 13 0.00028 38.4 9.1 86 261-346 34-146 (655)
268 cd01369 KISc_KHC_KIF5 Kinesin 77.6 2.2 4.7E-05 40.0 3.2 28 98-125 65-94 (325)
269 cd01529 4RHOD_Repeats Member o 77.5 4.4 9.6E-05 30.1 4.3 36 281-316 56-92 (96)
270 PF03808 Glyco_tran_WecB: Glyc 77.2 24 0.00053 29.5 9.2 74 263-336 30-106 (172)
271 COG0556 UvrB Helicase subunit 77.1 1.9 4.2E-05 42.4 2.7 51 100-150 23-79 (663)
272 PRK10536 hypothetical protein; 77.0 1.5 3.2E-05 39.4 1.8 28 97-124 63-90 (262)
273 TIGR00696 wecB_tagA_cpsF bacte 76.5 31 0.00067 29.2 9.6 72 265-336 32-105 (177)
274 cd01364 KISc_BimC_Eg5 Kinesin 75.8 1.6 3.5E-05 41.4 1.8 27 99-125 71-99 (352)
275 cd01533 4RHOD_Repeat_2 Member 75.6 14 0.0003 28.1 6.8 36 281-316 66-103 (109)
276 cd01371 KISc_KIF3 Kinesin moto 75.5 1.7 3.7E-05 40.9 1.8 28 98-125 70-99 (333)
277 PRK11747 dinG ATP-dependent DN 75.5 1.4 3E-05 45.8 1.4 21 108-128 49-71 (697)
278 smart00450 RHOD Rhodanese Homo 75.0 4.7 0.0001 29.5 3.9 36 281-316 56-92 (100)
279 COG1204 Superfamily II helicas 75.0 14 0.0003 38.9 8.5 78 273-357 68-154 (766)
280 smart00487 DEXDc DEAD-like hel 74.8 21 0.00046 29.5 8.4 73 282-358 55-138 (201)
281 COG1136 SalX ABC-type antimicr 74.7 7.5 0.00016 34.2 5.5 159 105-289 28-200 (226)
282 KOG4280|consensus 74.6 1.8 3.8E-05 43.3 1.8 28 98-125 74-103 (574)
283 cd00106 KISc Kinesin motor dom 74.6 2.9 6.3E-05 39.1 3.2 28 98-125 67-96 (328)
284 COG1199 DinG Rad3-related DNA 74.5 1.4 2.9E-05 45.6 1.0 42 88-129 14-57 (654)
285 cd01374 KISc_CENP_E Kinesin mo 74.1 3.3 7.1E-05 38.7 3.4 27 99-125 63-91 (321)
286 smart00115 CASc Caspase, inter 73.8 20 0.00043 31.9 8.2 60 283-344 10-84 (241)
287 PF01751 Toprim: Toprim domain 73.6 4.5 9.7E-05 30.5 3.5 58 284-341 1-70 (100)
288 cd01372 KISc_KIF4 Kinesin moto 73.3 3.4 7.4E-05 38.9 3.3 27 99-125 63-91 (341)
289 PLN03188 kinesin-12 family pro 73.2 3.2 7E-05 44.9 3.3 27 99-125 155-183 (1320)
290 PF11019 DUF2608: Protein of u 72.9 51 0.0011 29.6 10.6 112 203-314 84-211 (252)
291 cd00046 DEXDc DEAD-like helica 72.8 1.6 3.5E-05 34.1 0.9 14 109-122 1-14 (144)
292 cd01526 RHOD_ThiF Member of th 72.7 3.6 7.8E-05 32.2 2.9 36 281-316 72-109 (122)
293 PF00225 Kinesin: Kinesin moto 72.1 1.5 3.2E-05 41.2 0.6 27 99-125 64-92 (335)
294 COG4962 CpaF Flp pilus assembl 72.0 1.8 3.9E-05 40.4 1.0 39 98-136 162-201 (355)
295 smart00129 KISc Kinesin motor, 71.9 3.6 7.8E-05 38.6 3.2 30 96-125 66-97 (335)
296 TIGR01075 uvrD DNA helicase II 71.8 1.1 2.4E-05 46.8 -0.4 30 283-312 344-373 (715)
297 PRK11773 uvrD DNA-dependent he 70.9 1.2 2.7E-05 46.5 -0.3 37 283-320 349-385 (721)
298 cd01366 KISc_C_terminal Kinesi 69.8 2.8 6E-05 39.3 1.8 27 99-125 67-95 (329)
299 cd01527 RHOD_YgaP Member of th 69.7 7.1 0.00015 29.1 3.8 36 281-316 54-90 (99)
300 KOG0242|consensus 69.5 2.7 5.8E-05 43.4 1.8 51 98-150 75-127 (675)
301 PRK09200 preprotein translocas 69.1 13 0.00029 39.0 6.7 53 281-339 119-176 (790)
302 PRK11448 hsdR type I restricti 69.0 2.7 5.8E-05 46.1 1.7 30 95-124 415-449 (1123)
303 cd01521 RHOD_PspE2 Member of t 68.9 6.7 0.00015 30.0 3.6 36 281-316 64-101 (110)
304 PF12683 DUF3798: Protein of u 68.5 3.3 7.1E-05 37.2 1.9 76 282-363 63-144 (275)
305 KOG0239|consensus 68.5 3 6.4E-05 42.9 1.8 27 99-125 382-410 (670)
306 KOG1016|consensus 68.1 14 0.0003 38.3 6.3 83 281-363 719-822 (1387)
307 cd01449 TST_Repeat_2 Thiosulfa 68.0 13 0.00028 28.6 5.1 36 281-316 78-114 (118)
308 cd01518 RHOD_YceA Member of th 67.8 6 0.00013 29.6 3.1 36 281-316 61-97 (101)
309 PF13245 AAA_19: Part of AAA d 67.6 2.4 5.2E-05 30.3 0.7 51 102-152 3-62 (76)
310 COG0466 Lon ATP-dependent Lon 67.5 4.6 0.0001 41.3 2.9 84 108-216 350-437 (782)
311 KOG1803|consensus 67.5 6.9 0.00015 39.2 4.0 54 98-151 190-248 (649)
312 KOG0385|consensus 67.4 34 0.00074 35.6 8.8 58 279-339 215-275 (971)
313 KOG0701|consensus 67.4 2.4 5.3E-05 47.3 1.0 83 283-365 294-388 (1606)
314 cd01520 RHOD_YbbB Member of th 66.7 6.3 0.00014 31.2 3.1 36 281-316 86-122 (128)
315 PRK05298 excinuclease ABC subu 66.2 35 0.00076 35.3 9.1 82 264-345 40-148 (652)
316 cd01528 RHOD_2 Member of the R 66.1 14 0.00031 27.5 4.9 36 281-316 58-94 (101)
317 COG2519 GCD14 tRNA(1-methylade 65.9 55 0.0012 29.3 8.9 70 236-306 143-213 (256)
318 PF04364 DNA_pol3_chi: DNA pol 65.9 30 0.00065 27.8 6.9 77 271-358 16-95 (137)
319 COG2884 FtsE Predicted ATPase 65.5 5.6 0.00012 34.1 2.6 93 106-202 26-139 (223)
320 smart00493 TOPRIM topoisomeras 65.1 34 0.00073 23.8 6.4 56 284-341 2-57 (76)
321 KOG1802|consensus 65.0 49 0.0011 34.0 9.2 70 231-313 417-486 (935)
322 COG1219 ClpX ATP-dependent pro 64.9 2.1 4.5E-05 39.5 -0.0 19 106-124 95-113 (408)
323 PF00448 SRP54: SRP54-type pro 64.9 8.9 0.00019 33.0 3.9 34 203-236 103-136 (196)
324 PRK13833 conjugal transfer pro 64.7 4.2 9.1E-05 38.0 1.9 25 98-122 133-158 (323)
325 cd01126 TraG_VirD4 The TraG/Tr 64.6 5.6 0.00012 38.1 2.8 38 110-147 1-40 (384)
326 PRK13851 type IV secretion sys 64.4 2.6 5.7E-05 39.7 0.5 23 100-122 153-176 (344)
327 PRK15327 type III secretion sy 64.4 67 0.0014 30.9 9.8 80 265-363 167-259 (393)
328 cd01444 GlpE_ST GlpE sulfurtra 64.1 9.8 0.00021 27.9 3.6 36 281-316 56-92 (96)
329 TIGR02782 TrbB_P P-type conjug 64.0 4.4 9.6E-05 37.4 1.9 25 98-122 121-146 (299)
330 TIGR02640 gas_vesic_GvpN gas v 63.9 4.8 0.0001 36.4 2.1 25 98-122 11-35 (262)
331 PRK13900 type IV secretion sys 63.7 3 6.4E-05 39.2 0.7 18 105-122 157-174 (332)
332 cd01519 RHOD_HSP67B2 Member of 63.5 7.9 0.00017 29.1 3.0 36 281-316 66-102 (106)
333 cd01525 RHOD_Kc Member of the 63.1 9.3 0.0002 28.7 3.3 36 281-316 65-101 (105)
334 COG1127 Ttg2A ABC-type transpo 63.1 4.9 0.00011 35.7 1.9 79 105-183 31-126 (263)
335 PRK10875 recD exonuclease V su 62.6 18 0.00039 37.0 6.1 58 96-153 155-220 (615)
336 COG1135 AbcC ABC-type metal io 62.4 15 0.00034 33.9 5.0 33 284-316 267-299 (339)
337 PF12775 AAA_7: P-loop contain 62.2 5.7 0.00012 36.2 2.3 24 99-122 23-47 (272)
338 cd01532 4RHOD_Repeat_1 Member 62.0 12 0.00025 27.6 3.6 36 281-316 50-88 (92)
339 PHA02558 uvsW UvsW helicase; P 61.9 30 0.00065 34.5 7.5 67 280-357 157-230 (501)
340 cd01447 Polysulfide_ST Polysul 61.7 6.8 0.00015 29.2 2.3 36 281-316 61-97 (103)
341 TIGR01074 rep ATP-dependent DN 61.5 2.3 5.1E-05 44.0 -0.4 55 96-152 4-66 (664)
342 cd01130 VirB11-like_ATPase Typ 61.0 5.4 0.00012 33.9 1.8 25 98-122 14-39 (186)
343 TIGR01073 pcrA ATP-dependent D 60.5 2.2 4.8E-05 44.6 -0.8 38 283-321 346-383 (726)
344 PF05970 PIF1: PIF1-like helic 60.2 5.2 0.00011 38.1 1.8 31 96-126 4-40 (364)
345 cd00009 AAA The AAA+ (ATPases 59.8 6.3 0.00014 30.9 2.0 23 101-123 10-34 (151)
346 KOG0246|consensus 59.4 5 0.00011 39.7 1.4 27 99-125 281-309 (676)
347 cd01448 TST_Repeat_1 Thiosulfa 59.3 19 0.0004 27.9 4.5 36 281-316 79-116 (122)
348 PRK03692 putative UDP-N-acetyl 59.2 1.1E+02 0.0025 27.2 10.0 75 262-336 86-162 (243)
349 PRK13894 conjugal transfer ATP 59.0 6 0.00013 37.0 1.9 25 98-122 137-162 (319)
350 PRK12904 preprotein translocas 59.0 28 0.00061 36.8 6.8 53 281-339 122-178 (830)
351 cd00158 RHOD Rhodanese Homolog 59.0 16 0.00034 26.0 3.9 36 281-316 50-86 (89)
352 COG1922 WecG Teichoic acid bio 58.8 88 0.0019 28.1 9.0 75 262-336 89-166 (253)
353 KOG0383|consensus 58.6 7.4 0.00016 40.0 2.5 66 278-344 628-696 (696)
354 KOG0243|consensus 57.8 5.4 0.00012 42.5 1.5 25 101-125 120-146 (1041)
355 PRK11664 ATP-dependent RNA hel 57.8 73 0.0016 34.0 9.8 67 282-358 49-125 (812)
356 PRK10919 ATP-dependent DNA hel 57.4 3 6.5E-05 43.2 -0.4 31 283-313 344-374 (672)
357 PRK13897 type IV secretion sys 57.4 7 0.00015 39.9 2.1 39 109-147 159-199 (606)
358 COG1126 GlnQ ABC-type polar am 56.5 18 0.00039 31.7 4.1 18 105-122 25-42 (240)
359 TIGR02981 phageshock_pspE phag 56.1 35 0.00077 25.7 5.4 35 281-315 58-92 (101)
360 PRK06646 DNA polymerase III su 55.9 83 0.0018 25.9 7.9 86 260-358 5-93 (154)
361 PRK05728 DNA polymerase III su 55.5 77 0.0017 25.6 7.6 81 265-358 10-94 (142)
362 PRK13103 secA preprotein trans 55.3 57 0.0012 34.9 8.3 56 280-341 122-181 (913)
363 PF00437 T2SE: Type II/IV secr 55.2 6.7 0.00015 35.4 1.5 25 98-122 116-141 (270)
364 KOG0240|consensus 55.1 7.6 0.00016 38.5 1.9 26 99-124 72-99 (607)
365 cd00032 CASc Caspase, interleu 54.8 80 0.0017 28.0 8.3 55 290-346 30-87 (243)
366 cd01535 4RHOD_Repeat_4 Member 54.5 30 0.00064 28.1 5.1 36 281-316 49-85 (145)
367 PF04273 DUF442: Putative phos 54.5 27 0.00059 27.0 4.6 34 267-300 72-105 (110)
368 KOG0245|consensus 54.4 9.9 0.00021 40.4 2.7 53 98-150 76-130 (1221)
369 PRK13880 conjugal transfer cou 54.4 8.7 0.00019 39.5 2.3 39 109-147 176-216 (636)
370 KOG1001|consensus 54.4 3.1 6.8E-05 42.8 -0.9 98 266-363 520-623 (674)
371 TIGR02785 addA_Gpos recombinat 54.2 5.3 0.00012 44.5 0.8 26 96-123 4-29 (1232)
372 cd06578 HemD Uroporphyrinogen- 53.5 76 0.0017 27.4 8.1 72 266-339 104-181 (239)
373 PRK10287 thiosulfate:cyanide s 53.0 39 0.00085 25.7 5.2 35 282-316 61-95 (104)
374 COG4161 ArtP ABC-type arginine 53.0 37 0.0008 28.4 5.2 47 107-153 27-85 (242)
375 PF02534 T4SS-DNA_transf: Type 52.8 6.5 0.00014 38.7 1.1 38 109-146 45-84 (469)
376 KOG2004|consensus 52.7 13 0.00028 38.3 3.1 87 99-210 421-519 (906)
377 PF02142 MGS: MGS-like domain 52.7 6.9 0.00015 29.2 1.0 45 296-340 21-69 (95)
378 smart00851 MGS MGS-like domain 52.6 19 0.0004 26.5 3.3 42 298-340 23-64 (90)
379 PRK13850 type IV secretion sys 52.4 8.3 0.00018 39.8 1.8 39 109-147 140-180 (670)
380 COG0630 VirB11 Type IV secreto 51.8 4.8 0.0001 37.4 -0.0 22 101-122 136-157 (312)
381 KOG0351|consensus 51.5 33 0.00073 36.9 6.1 58 282-339 305-364 (941)
382 PF01935 DUF87: Domain of unkn 51.3 5 0.00011 35.2 0.0 18 107-124 22-39 (229)
383 COG2805 PilT Tfp pilus assembl 51.0 5.6 0.00012 36.5 0.3 12 111-122 128-139 (353)
384 cd01522 RHOD_1 Member of the R 50.9 32 0.0007 26.6 4.6 37 280-316 63-100 (117)
385 PLN02160 thiosulfate sulfurtra 50.8 20 0.00044 28.7 3.5 37 280-316 80-117 (136)
386 TIGR03714 secA2 accessory Sec 50.8 44 0.00095 35.1 6.6 52 282-339 112-172 (762)
387 cd03418 GRX_GRXb_1_3_like Glut 50.7 79 0.0017 21.7 7.6 53 284-336 2-56 (75)
388 TIGR02196 GlrX_YruB Glutaredox 50.5 36 0.00077 23.0 4.4 52 286-337 4-56 (74)
389 PRK10329 glutaredoxin-like pro 49.9 94 0.002 22.3 7.3 67 283-350 2-69 (81)
390 PHA02653 RNA helicase NPH-II; 49.9 50 0.0011 34.3 6.9 72 281-358 222-300 (675)
391 smart00382 AAA ATPases associa 49.6 5.8 0.00013 30.8 0.1 16 108-123 2-17 (148)
392 PF13871 Helicase_C_4: Helicas 49.5 23 0.0005 32.3 4.0 42 322-363 52-101 (278)
393 PRK05320 rhodanese superfamily 49.1 21 0.00045 32.2 3.7 37 281-317 175-212 (257)
394 PRK13876 conjugal transfer cou 49.0 11 0.00024 38.9 2.0 38 109-146 145-184 (663)
395 cd01080 NAD_bind_m-THF_DH_Cycl 48.9 1.5E+02 0.0033 24.7 8.6 76 281-363 43-122 (168)
396 KOG0352|consensus 48.5 31 0.00067 33.4 4.7 58 282-339 62-121 (641)
397 cd01129 PulE-GspE PulE/GspE Th 48.5 12 0.00026 33.8 2.1 25 98-122 68-94 (264)
398 COG2804 PulE Type II secretory 48.4 6.3 0.00014 38.7 0.2 25 98-122 246-272 (500)
399 PRK00676 hemA glutamyl-tRNA re 48.2 1.1E+02 0.0025 28.7 8.4 90 274-364 166-268 (338)
400 PF01695 IstB_IS21: IstB-like 47.5 7.9 0.00017 32.7 0.6 21 103-123 42-62 (178)
401 PF02367 UPF0079: Uncharacteri 47.2 5.6 0.00012 31.5 -0.3 26 105-130 12-38 (123)
402 COG0300 DltE Short-chain dehyd 47.1 1.3E+02 0.0027 27.4 8.3 68 272-339 21-92 (265)
403 cd02131 PA_hNAALADL2_like PA_h 46.9 50 0.0011 27.1 5.1 57 284-342 18-76 (153)
404 TIGR03590 PseG pseudaminic aci 46.8 1.4E+02 0.0031 27.0 8.9 85 274-365 46-134 (279)
405 KOG1137|consensus 46.3 1.3E+02 0.0027 30.3 8.5 45 307-351 415-463 (668)
406 TIGR00150 HI0065_YjeE ATPase, 46.3 7.6 0.00016 31.2 0.3 36 106-141 20-56 (133)
407 PRK13107 preprotein translocas 45.8 1E+02 0.0022 33.0 8.4 53 281-339 123-179 (908)
408 PF09419 PGP_phosphatase: Mito 45.7 1.5E+02 0.0033 24.8 8.0 44 283-330 79-130 (168)
409 COG0606 Predicted ATPase with 45.2 16 0.00035 35.7 2.4 35 99-133 188-223 (490)
410 TIGR02533 type_II_gspE general 45.0 14 0.00031 36.6 2.1 25 98-122 230-256 (486)
411 COG4555 NatA ABC-type Na+ tran 45.0 18 0.00039 31.4 2.4 33 203-235 170-202 (245)
412 PRK01415 hypothetical protein; 45.0 24 0.00053 31.6 3.3 37 281-317 171-208 (247)
413 PF11496 HDA2-3: Class II hist 44.9 45 0.00098 30.8 5.2 96 267-362 95-218 (297)
414 TIGR00376 DNA helicase, putati 44.7 13 0.00029 38.3 1.9 57 95-151 159-220 (637)
415 PRK10436 hypothetical protein; 44.1 15 0.00033 36.2 2.1 25 98-122 206-232 (462)
416 TIGR02788 VirB11 P-type DNA tr 43.9 9 0.00019 35.5 0.5 18 105-122 141-158 (308)
417 PRK00162 glpE thiosulfate sulf 43.9 29 0.00064 26.2 3.3 36 281-316 58-94 (108)
418 TIGR02524 dot_icm_DotB Dot/Icm 43.5 12 0.00026 35.5 1.3 16 107-122 133-148 (358)
419 KOG0349|consensus 43.2 14 0.0003 35.6 1.5 37 166-202 2-38 (725)
420 KOG1132|consensus 43.2 4.1E+02 0.0089 28.5 12.0 81 281-362 561-658 (945)
421 PF00532 Peripla_BP_1: Peripla 42.9 2.5E+02 0.0055 25.3 15.1 125 218-349 60-209 (279)
422 cd03031 GRX_GRX_like Glutaredo 42.9 1.5E+02 0.0032 24.2 7.4 45 283-327 1-52 (147)
423 cd01445 TST_Repeats Thiosulfat 42.8 62 0.0013 25.9 5.2 35 282-316 96-134 (138)
424 PRK06124 gluconate 5-dehydroge 42.7 1.9E+02 0.0041 25.3 8.9 68 272-339 26-96 (256)
425 cd01131 PilT Pilus retraction 42.6 8.6 0.00019 33.0 0.1 12 111-122 4-15 (198)
426 KOG0745|consensus 42.6 8.7 0.00019 37.1 0.2 20 105-124 223-242 (564)
427 PF03853 YjeF_N: YjeF-related 42.3 1.3E+02 0.0027 25.1 7.2 55 281-335 25-85 (169)
428 PRK10310 PTS system galactitol 42.3 1.3E+02 0.0029 22.2 6.6 61 283-350 4-70 (94)
429 TIGR02314 ABC_MetN D-methionin 42.3 42 0.0009 31.7 4.7 32 284-315 270-301 (343)
430 KOG0949|consensus 41.9 16 0.00034 39.0 1.9 32 95-126 513-544 (1330)
431 cd08191 HHD 6-hydroxyhexanoate 41.8 1.8E+02 0.0039 27.8 9.1 70 270-339 11-87 (386)
432 PRK06526 transposase; Provisio 41.6 10 0.00022 34.1 0.5 22 103-124 93-114 (254)
433 COG4181 Predicted ABC-type tra 41.6 16 0.00036 30.8 1.6 158 106-289 34-204 (228)
434 PRK14729 miaA tRNA delta(2)-is 41.1 9.5 0.00021 35.2 0.2 13 110-122 6-18 (300)
435 PRK13822 conjugal transfer cou 41.1 19 0.0004 37.2 2.3 38 109-146 225-264 (641)
436 PRK07478 short chain dehydroge 40.8 1.9E+02 0.0041 25.3 8.6 67 273-339 22-91 (254)
437 PRK13889 conjugal transfer rel 40.4 15 0.00032 39.8 1.5 57 94-150 347-408 (988)
438 PF13555 AAA_29: P-loop contai 40.3 10 0.00022 26.0 0.2 15 108-122 23-37 (62)
439 PRK09860 putative alcohol dehy 40.2 1.6E+02 0.0035 28.2 8.5 69 270-338 19-95 (383)
440 PHA02244 ATPase-like protein 40.1 20 0.00043 34.2 2.1 25 98-122 109-133 (383)
441 PF14617 CMS1: U3-containing 9 39.9 47 0.001 29.8 4.4 71 282-355 127-207 (252)
442 PF13401 AAA_22: AAA domain; P 39.5 9.8 0.00021 29.7 0.0 15 108-122 4-18 (131)
443 PF00106 adh_short: short chai 39.3 1.6E+02 0.0036 23.6 7.5 67 273-339 16-88 (167)
444 TIGR02538 type_IV_pilB type IV 39.3 19 0.00041 36.5 2.0 25 98-122 304-330 (564)
445 TIGR01970 DEAH_box_HrpB ATP-de 39.3 3.8E+02 0.0082 28.8 11.6 69 281-359 45-123 (819)
446 TIGR02767 TraG-Ti Ti-type conj 39.2 20 0.00043 36.8 2.1 40 109-148 212-253 (623)
447 COG2927 HolC DNA polymerase II 39.1 2.1E+02 0.0046 23.3 8.4 80 272-362 17-99 (144)
448 PF13191 AAA_16: AAA ATPase do 39.1 17 0.00038 30.2 1.5 17 107-123 23-39 (185)
449 TIGR01447 recD exodeoxyribonuc 38.9 17 0.00036 37.1 1.5 56 96-151 148-212 (586)
450 PF02698 DUF218: DUF218 domain 38.8 1.8E+02 0.0039 23.4 7.6 77 266-342 22-109 (155)
451 PRK14721 flhF flagellar biosyn 38.5 3.9E+02 0.0084 26.1 11.3 72 203-289 289-361 (420)
452 TIGR01448 recD_rel helicase, p 38.1 33 0.00072 35.9 3.6 57 95-151 325-387 (720)
453 PF12689 Acid_PPase: Acid Phos 38.1 2.4E+02 0.0052 23.6 10.9 119 201-329 46-168 (169)
454 KOG1180|consensus 38.0 1E+02 0.0022 31.1 6.5 74 282-358 116-194 (678)
455 COG0607 PspE Rhodanese-related 37.9 25 0.00055 26.3 2.1 37 280-316 60-97 (110)
456 cd01530 Cdc25 Cdc25 phosphatas 37.9 37 0.00079 26.5 3.1 36 281-316 68-117 (121)
457 PF00465 Fe-ADH: Iron-containi 37.9 1.4E+02 0.0031 28.2 7.7 69 270-339 11-86 (366)
458 cd08185 Fe-ADH1 Iron-containin 37.8 2.2E+02 0.0047 27.2 9.0 69 270-338 14-90 (380)
459 COG3638 ABC-type phosphate/pho 37.8 3E+02 0.0065 24.6 9.0 66 105-170 27-101 (258)
460 TIGR02195 heptsyl_trn_II lipop 37.7 2.4E+02 0.0052 26.1 9.1 90 266-365 192-285 (334)
461 TIGR02181 GRX_bact Glutaredoxi 37.7 1.4E+02 0.003 20.8 6.8 41 285-325 2-43 (79)
462 KOG0952|consensus 37.3 1.3E+02 0.0029 32.7 7.6 70 281-357 164-246 (1230)
463 COG5059 KIP1 Kinesin-like prot 36.9 26 0.00057 35.6 2.5 30 99-128 79-110 (568)
464 PRK05867 short chain dehydroge 36.7 2.9E+02 0.0062 24.1 9.5 67 273-339 25-94 (253)
465 COG1131 CcmA ABC-type multidru 36.2 32 0.00069 31.7 2.8 32 203-234 173-205 (293)
466 TIGR03865 PQQ_CXXCW PQQ-depend 36.2 46 0.00099 27.6 3.5 37 280-316 115-153 (162)
467 PRK07454 short chain dehydroge 35.9 2.9E+02 0.0062 23.8 9.5 68 272-339 21-91 (241)
468 COG1221 PspF Transcriptional r 35.8 24 0.00052 34.0 2.0 34 87-122 82-115 (403)
469 PF12846 AAA_10: AAA-like doma 35.7 13 0.00028 33.7 0.2 15 109-123 2-16 (304)
470 cd08172 GlyDH-like1 Glycerol d 35.6 2.4E+02 0.0052 26.5 8.8 57 283-340 52-110 (347)
471 TIGR03819 heli_sec_ATPase heli 35.2 25 0.00054 33.2 2.0 25 98-122 167-192 (340)
472 PRK13958 N-(5'-phosphoribosyl) 35.1 1.4E+02 0.003 25.9 6.5 50 268-319 40-89 (207)
473 PRK11331 5-methylcytosine-spec 35.0 27 0.00058 34.2 2.2 27 98-124 184-210 (459)
474 PRK11493 sseA 3-mercaptopyruva 34.9 44 0.00096 30.4 3.5 36 281-316 231-267 (281)
475 cd08170 GlyDH Glycerol dehydro 34.8 3.1E+02 0.0066 25.8 9.4 43 295-337 39-83 (351)
476 KOG1802|consensus 34.8 26 0.00057 35.8 2.1 32 91-122 408-439 (935)
477 cd01423 MGS_CPS_I_III Methylgl 34.8 43 0.00093 25.8 3.0 65 269-340 14-80 (116)
478 TIGR02744 TrbI_Ftype type-F co 34.2 2.2E+02 0.0048 22.1 7.3 62 278-348 27-100 (112)
479 PF07728 AAA_5: AAA domain (dy 33.9 14 0.00029 29.5 -0.0 14 110-123 1-14 (139)
480 PRK08762 molybdopterin biosynt 33.7 1.1E+02 0.0023 29.3 6.1 36 280-315 56-92 (376)
481 PRK10646 ADP-binding protein; 33.5 16 0.00035 30.1 0.3 41 101-141 20-62 (153)
482 PF00581 Rhodanese: Rhodanese- 33.5 34 0.00075 25.5 2.3 35 282-316 68-108 (113)
483 PF01488 Shikimate_DH: Shikima 33.4 2.2E+02 0.0048 22.5 7.0 82 271-363 25-115 (135)
484 TIGR00348 hsdR type I site-spe 33.3 28 0.00062 36.1 2.2 17 109-125 264-280 (667)
485 KOG1133|consensus 33.1 37 0.00081 34.8 2.9 35 88-122 14-48 (821)
486 PRK09183 transposase/IS protei 33.0 16 0.00036 32.9 0.4 21 104-124 98-118 (259)
487 TIGR02525 plasmid_TraJ plasmid 32.9 16 0.00034 35.0 0.2 16 107-122 148-163 (372)
488 PF10593 Z1: Z1 domain; Inter 32.8 59 0.0013 29.0 3.9 50 305-359 110-163 (239)
489 cd08187 BDH Butanol dehydrogen 32.7 3.1E+02 0.0068 26.1 9.1 70 270-339 17-94 (382)
490 cd01422 MGS Methylglyoxal synt 32.5 74 0.0016 24.6 4.0 43 297-340 36-79 (115)
491 PRK10964 ADP-heptose:LPS hepto 32.4 3.1E+02 0.0066 25.2 8.9 90 266-366 195-288 (322)
492 PRK00142 putative rhodanese-re 32.4 46 0.00099 31.0 3.2 37 281-317 171-208 (314)
493 PRK08181 transposase; Validate 32.4 18 0.00039 32.9 0.5 19 105-123 103-121 (269)
494 PRK09492 treR trehalose repres 32.3 3.8E+02 0.0082 24.2 10.9 78 262-339 155-240 (315)
495 PRK06827 phosphoribosylpyropho 32.3 1.2E+02 0.0025 29.2 5.9 57 284-341 267-329 (382)
496 cd05212 NAD_bind_m-THF_DH_Cycl 32.0 2.7E+02 0.0059 22.4 8.6 82 272-360 14-103 (140)
497 COG4098 comFA Superfamily II D 31.8 2.5E+02 0.0054 26.7 7.6 54 275-339 138-193 (441)
498 PRK14873 primosome assembly pr 31.8 98 0.0021 32.2 5.7 52 294-358 440-497 (665)
499 KOG0060|consensus 31.8 17 0.00036 36.5 0.2 18 105-122 458-475 (659)
500 cd01027 TOPRIM_RNase_M5_like T 31.7 1.6E+02 0.0034 21.2 5.3 52 284-340 3-54 (81)
No 1
>KOG0341|consensus
Probab=100.00 E-value=2.4e-74 Score=514.37 Aligned_cols=351 Identities=64% Similarity=0.969 Sum_probs=323.0
Q ss_pred CCCCCCCcccccchHHHHHHHHHHhhHHHhhhhHHHhhhhcccCCCCCCCCCccchhhhccccccCCcccHhhhHHHHHH
Q psy7790 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVWGRMSNISLLDQHSELKKM 82 (367)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (367)
.+++||||+|||||++||++...++++...+..... .+.+++++.+. +++...+.+.+.|+|++|.++++.
T Consensus 17 ~de~d~dyv~yv~v~err~~~~~k~l~r~~k~~~~~---~q~~~~~~~~~------~~~d~~g~~~n~sLL~qh~elk~~ 87 (610)
T KOG0341|consen 17 DDEDDEDYVPYVPVQERRAQVHRKLLQRQVKAPTEE---EQEDSESEREK------KEDDKQGEEANKSLLDQHTELKET 87 (610)
T ss_pred cccccccceecccHHHHHHHHHHHHHHhhccccchh---hccchhccccc------CcccccchhhhhhHHHHHHHHHhh
Confidence 344577999999999999999999986644322211 12222222221 111223778899999999999999
Q ss_pred HHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCccccCcccccccCCccccCCCHHHHHHHHhccCeEEecCCCC
Q psy7790 83 AEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVP 162 (367)
Q Consensus 83 ~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~g~~~~ 162 (367)
+++ ..+.+++|..+++++++++.+|+.++++++.+.|.||..|+.+.|.||..|+.|+.++.+.+|++++|.+.|.++|
T Consensus 88 ~~a-k~sa~Ekql~eEee~me~v~~~k~LmsV~ElakGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ip 166 (610)
T KOG0341|consen 88 AEA-KISASEKQLMEEEEIMESVADGKALMSVAELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIP 166 (610)
T ss_pred hhh-hcchHHHHHHHHHHHHHHHhcCccceeHHHHhCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCC
Confidence 876 6888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch----------------------------------------
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS---------------------------------------- 202 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~---------------------------------------- 202 (367)
+|+.+|.+|.+|..+++.|+++|+..|||||.+++|.+|+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 9999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy7790 203 -------------------------------------------------------------------------------- 202 (367)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (367)
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~ 326 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDA 326 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHH
Confidence
Q ss_pred ------------------HHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEe
Q psy7790 203 ------------------EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264 (367)
Q Consensus 203 ------------------~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~ 264 (367)
++++.|+.+|..+|||++||||||..++.|+++.+..|+.|++++.++ ++.++.|.+.+|
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA--AsldViQevEyV 404 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA--ASLDVIQEVEYV 404 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccc--cchhHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 999999999999
Q ss_pred chhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q psy7790 265 KQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rG 344 (367)
..++|+.+|+++|+++.+++||||..+.+++.+++||..+|+.++++|||.+|++|..+++.|+.|+.+||||||+++.|
T Consensus 405 kqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKG 484 (610)
T KOG0341|consen 405 KQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKG 484 (610)
T ss_pred HhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCEEEEcCCCCCcccc
Q psy7790 345 LDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 345 lDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|||+|+||||||||.++++|
T Consensus 485 LDFp~iqHVINyDMP~eIENY 505 (610)
T KOG0341|consen 485 LDFPDIQHVINYDMPEEIENY 505 (610)
T ss_pred CCCccchhhccCCChHHHHHH
Confidence 999999999999999999998
No 2
>KOG0330|consensus
Probab=100.00 E-value=2.6e-55 Score=392.81 Aligned_cols=299 Identities=22% Similarity=0.334 Sum_probs=258.8
Q ss_pred hccccccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc-cC---
Q psy7790 61 SKVWGRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-RA--- 133 (367)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-~~--- 133 (367)
.....+..+|.+|+++++++++++..+ ..||++ |.++||.++.|+|+++.|+|||||| |.+|+++++ ..
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~I----Q~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~ 129 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQELGWKKPTKI----QSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKL 129 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchh----hhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC
Confidence 333455678999999999999997666 999999 9999999999999999999999999 999999874 22
Q ss_pred -CccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhc
Q psy7790 134 -PRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQG 196 (367)
Q Consensus 134 -~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ 196 (367)
..++..++++.+.+++.. ..+++||.++..+...+.. ++|||+|.+++.+.+.-....+...+
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 335788888888888764 3456799887655544433 79999999999954333333333333
Q ss_pred ccc-------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhH
Q psy7790 197 IPA-------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAK 269 (367)
Q Consensus 197 ip~-------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 269 (367)
++. -|.+.+.+|++.+|..+|++|||||||.++.++....+.+|+.|.+..... +...+.|.|.+++...|
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~--tv~~lkQ~ylfv~~k~K 287 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQ--TVDHLKQTYLFVPGKDK 287 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhc--chHHhhhheEecccccc
Confidence 332 233899999999999999999999999999999999999999999988877 88899999999999999
Q ss_pred HHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 270 IVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 270 ~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
..+|+.+|+... ..+||||+|+..+.+++-.|+..|+.+..+||.|+|..|..+++.|++|..+||||||+++||+|+|
T Consensus 288 ~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 288 DTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred chhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 999999999765 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCcccc
Q psy7790 349 EIKHVINTEAKIKKREH 365 (367)
Q Consensus 349 ~v~~VI~yd~P~~~~~Y 365 (367)
.|++|||||+|.+..+|
T Consensus 368 ~Vd~VVNyDiP~~skDY 384 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDY 384 (476)
T ss_pred CceEEEecCCCCcHHHH
Confidence 99999999999999988
No 3
>KOG0331|consensus
Probab=100.00 E-value=2.4e-53 Score=402.71 Aligned_cols=293 Identities=29% Similarity=0.395 Sum_probs=259.6
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----------C
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----------A 133 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----------~ 133 (367)
..|+.+.+++++.+++...+ +.||+| |.+.+|.+++|+|+++.|.|||||| |.+|+..++. |
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpI----Qaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P 166 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPI----QAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGP 166 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchh----hhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCC
Confidence 47999999999999986666 999999 9999999999999999999999999 9999877643 3
Q ss_pred CccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhh---
Q psy7790 134 PRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQV--- 194 (367)
Q Consensus 134 ~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~--- 194 (367)
..+++++++|++.++.+. ..+++||....+|+..++. ++||+||++++...... ...++.
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~-l~~v~ylVL 245 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLN-LSRVTYLVL 245 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCcc-ccceeEEEe
Confidence 456789999999888764 3456799999999998876 79999999998865432 233333
Q ss_pred ----hcccccchHHHHHHHhhc-cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhH
Q psy7790 195 ----QGIPAALSEDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAK 269 (367)
Q Consensus 195 ----~~ip~~l~~~v~~Il~~l-~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 269 (367)
+++.+.|.++|+.|++.+ +..+|+++||||||.+++.++..+|.+|+.+.++......++.++.|.+..|+..+|
T Consensus 246 DEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 246 DEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred ccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 445566779999999999 677899999999999999999999999999999877655578899999999999898
Q ss_pred HHHHHHHHhhc----CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccC
Q psy7790 270 IVYLLECLQKT----EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGL 345 (367)
Q Consensus 270 ~~~l~~~l~~~----~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGl 345 (367)
...|..+|... ++++||||+|++.|++|+..|+..++++.+|||+++|.+|..+++.|++|+..||||||+|+|||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 88888888764 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCEEEEcCCCCCcccc
Q psy7790 346 DFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 346 Di~~v~~VI~yd~P~~~~~Y 365 (367)
|||+|++|||||+|.++++|
T Consensus 406 Di~dV~lVInydfP~~vEdY 425 (519)
T KOG0331|consen 406 DVPDVDLVINYDFPNNVEDY 425 (519)
T ss_pred CCccccEEEeCCCCCCHHHH
Confidence 99999999999999999998
No 4
>KOG0328|consensus
Probab=100.00 E-value=1e-49 Score=343.29 Aligned_cols=298 Identities=18% Similarity=0.297 Sum_probs=256.8
Q ss_pred hccccccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----
Q psy7790 61 SKVWGRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR----- 132 (367)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~----- 132 (367)
.........|+++++.+++++...+.+ ++|+.+ |+.+|++|+.|+|++++|+.|+||| |+..+++...
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~I----QqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~ 95 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAI----QQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRE 95 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHH----HhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccce
Confidence 344455678999999999999997666 999999 9999999999999999999999999 8777776642
Q ss_pred CCccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhc
Q psy7790 133 APRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQG 196 (367)
Q Consensus 133 ~~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ 196 (367)
-...+..++++++.++.+. ++..+||.++...++.+.. .|+||++++.++...+.. ..+++.+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~t-r~vkmlV 174 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRT-RAVKMLV 174 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccc-cceeEEE
Confidence 1344677777777777663 4567799998888877663 589999999998765432 3344443
Q ss_pred ccc-------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhh-
Q psy7790 197 IPA-------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA- 268 (367)
Q Consensus 197 ip~-------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~- 268 (367)
++. .|.+++..|++.+|++.|++++|||+|.++......|+.+|+.+-+.+.+. +...|.|+|+-++.++
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel--tlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL--TLEGIKQFFVAVEKEEW 252 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC--chhhhhhheeeechhhh
Confidence 332 344899999999999999999999999999999999999999999998887 7888999999998765
Q ss_pred HHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCc
Q psy7790 269 KIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDF 347 (367)
Q Consensus 269 k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi 347 (367)
|+..|..+..... .+++|||||+..+++|.+.|+..++.+.++||+|.|++|..++..||+|+.+||++||+++||||+
T Consensus 253 KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 9999988876543 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCcccc
Q psy7790 348 EEIKHVINTEAKIKKREH 365 (367)
Q Consensus 348 ~~v~~VI~yd~P~~~~~Y 365 (367)
|.|.+|||||+|.+.+.|
T Consensus 333 ~qVslviNYDLP~nre~Y 350 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELY 350 (400)
T ss_pred ceeEEEEecCCCccHHHH
Confidence 999999999999999887
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-49 Score=387.12 Aligned_cols=293 Identities=25% Similarity=0.378 Sum_probs=256.5
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc--CC-----ccc
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR--AP-----RCI 137 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~--~~-----~~i 137 (367)
..|++|++++.+++++.+.+ ..||++ |.++||.++.|+|++++|+|||||| |.+|+++.+. .. .+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~I----Q~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPI----QLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEE
Confidence 67999999999999997666 999999 9999999999999999999999999 9999988765 21 578
Q ss_pred cCCCHHHHHHHHhc-------c-----CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhh-----
Q psy7790 138 LSLPDQVHDIIRRN-------L-----RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQ----- 195 (367)
Q Consensus 138 ~~~~~~~~~~~~~~-------~-----~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~----- 195 (367)
.+++++++.++... . ...+||.++..+...++. ++||+|+++++....+. ...+...
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~-l~~v~~lVlDEA 183 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLD-LSGVETLVLDEA 183 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcc-hhhcCEEEeccH
Confidence 89999888887763 2 245688888777766664 78999999999876332 2333333
Q ss_pred --cccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhh-HHHH
Q psy7790 196 --GIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVY 272 (367)
Q Consensus 196 --~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~ 272 (367)
++...|.+++..|+..++.++|+++||||+|..+..+++.++++|..+.+.......+..++.|.++.++... |+..
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 3344566999999999999999999999999999999999999999988885544336789999999999876 9999
Q ss_pred HHHHHhhcCC-CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCC
Q psy7790 273 LLECLQKTEP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIK 351 (367)
Q Consensus 273 l~~~l~~~~~-~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~ 351 (367)
|..++..... ++||||+|+..|+.++..|...|+++..+||+|+|++|.++++.|++|+.+||||||+++||||||+|+
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 9999987654 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcccc
Q psy7790 352 HVINTEAKIKKREH 365 (367)
Q Consensus 352 ~VI~yd~P~~~~~Y 365 (367)
||||||+|.++++|
T Consensus 344 ~VinyD~p~~~e~y 357 (513)
T COG0513 344 HVINYDLPLDPEDY 357 (513)
T ss_pred eeEEccCCCCHHHh
Confidence 99999999999998
No 6
>KOG0333|consensus
Probab=100.00 E-value=1.5e-47 Score=354.21 Aligned_cols=294 Identities=28% Similarity=0.432 Sum_probs=250.7
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc--C-------
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR--A------- 133 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~--~------- 133 (367)
+-.+..+.++..++++.+...+ ..||++ |..+||..++.+|+|++|+|||||| |.+|++.... |
T Consensus 243 plrnwEE~~~P~e~l~~I~~~~y~eptpI----qR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 243 PLRNWEESGFPLELLSVIKKPGYKEPTPI----QRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred cccChhhcCCCHHHHHHHHhcCCCCCchH----HHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 4457888889999999887666 999999 9999999999999999999999999 8777765421 1
Q ss_pred -----CccccCCCHHHHHHHHhc-------c----CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCC--CC
Q psy7790 134 -----PRCILSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKK--PT 190 (367)
Q Consensus 134 -----~~~i~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~--pt 190 (367)
-..+.++++++++++... + -.++||.....+-..+.. +++|++|++.|.+.-+.. .|
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 233689999999988864 1 224677766554333322 789999999987643211 11
Q ss_pred hh----hhhcccccchHHHHHHHhhccCC-------------------------ceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 191 PI----QVQGIPAALSEDVRTIFSFFRGQ-------------------------RQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 191 ~i----Q~~~ip~~l~~~v~~Il~~l~~~-------------------------~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
.+ -..++++.|.+++..|+.++|.. +|+++||||+|+.+..+++.||++|+
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 11 12456677779999999888621 89999999999999999999999999
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 320 (367)
++.++..+. +.+.+.|.++.+..+.|...|.++|.+. .+++|||+|+++.|+.|+..|...|++|..|||+.+|++|
T Consensus 479 ~vtig~~gk--~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 479 VVTIGSAGK--PTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred EEEeccCCC--CccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 999999999 8889999999999999999999999887 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
..+++.|+.|..+||||||+++||||||||.|||||||++++++|
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDY 601 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDY 601 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHH
Confidence 999999999999999999999999999999999999999999998
No 7
>KOG0338|consensus
Probab=100.00 E-value=2.6e-48 Score=357.99 Aligned_cols=292 Identities=23% Similarity=0.337 Sum_probs=247.2
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccc--ccCC------cc
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTS--WRAP------RC 136 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~--~~~~------~~ 136 (367)
.+|-.+.++..+++++...| ..|||| |.+.||..+.|||++++|-|||||| |.+|++.. |.|- -+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpI----Q~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVL 256 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPI----QVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVL 256 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCch----hhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEE
Confidence 37889999999999998888 999999 9999999999999999999999999 99999887 3441 23
Q ss_pred ccCCCHHHHHHHHh-----------ccCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhccc--
Q psy7790 137 ILSLPDQVHDIIRR-----------NLRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIP-- 198 (367)
Q Consensus 137 i~~~~~~~~~~~~~-----------~~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip-- 198 (367)
++.++++++-++.. .+++.+||-++..|-..++. ++||||+++||++.--.+...|...+++
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 56667665544433 25677899988766555554 6899999999987633333455444333
Q ss_pred -----ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech---hhHH
Q psy7790 199 -----AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ---EAKI 270 (367)
Q Consensus 199 -----~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~ 270 (367)
..|.+++..|++.++.+||++||||||+.++..++.-.|++|+.|.++.... +...+.|.|+++.+ ..+-
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~--~a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKD--TAPKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccc--cchhhhHHHheeccccccccH
Confidence 3455999999999999999999999999999999999999999999998877 77889999998863 2455
Q ss_pred HHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCC
Q psy7790 271 VYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEE 349 (367)
Q Consensus 271 ~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~ 349 (367)
..|..++... ..++|||+.|++.|.++.-.|-..|+++.-+||.++|.+|...++.|+.++++||||||+++|||||++
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 5566666543 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCcccc
Q psy7790 350 IKHVINTEAKIKKREH 365 (367)
Q Consensus 350 v~~VI~yd~P~~~~~Y 365 (367)
|..||||+||.+.+.|
T Consensus 495 V~tVINy~mP~t~e~Y 510 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHY 510 (691)
T ss_pred eeEEEeccCchhHHHH
Confidence 9999999999999887
No 8
>KOG0340|consensus
Probab=100.00 E-value=2.9e-47 Score=337.48 Aligned_cols=295 Identities=20% Similarity=0.286 Sum_probs=241.0
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCc-----ccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPR-----CIL 138 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~-----~i~ 138 (367)
...|+.|++++++.+.+.+.+ +.|||+ |+.+||.|++|+|++++|.|||||| |.+|+++.|...+ ++.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpi----Q~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvl 81 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPI----QQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVL 81 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCch----HhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEe
Confidence 467999999999999998888 999999 9999999999999999999999999 9999999986533 355
Q ss_pred CCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCC---Chhhhhcc--
Q psy7790 139 SLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKP---TPIQVQGI-- 197 (367)
Q Consensus 139 ~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~p---t~iQ~~~i-- 197 (367)
.++++.+-++.++ ..+++||.++-.|...+.+ +.+|+++.+++...+-..+ ..++..++
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 6666655555443 4678899887655555544 6899999999886532111 11111111
Q ss_pred -----cccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHH
Q psy7790 198 -----PAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272 (367)
Q Consensus 198 -----p~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 272 (367)
..-|.++++.|++.+|..||+++||||++..+..+.......+............+...+.|.|+.|+...|-.|
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHH
Confidence 122338888999999999999999999999888776555554333233222223367789999999999999999
Q ss_pred HHHHHhhcC----CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 273 LLECLQKTE----PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 273 l~~~l~~~~----~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
|+..|.... +.++||+|+...|+.|+..|+..++.+.++||.|+|.+|..++.+|+++..+|||||||++||+|||
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCC
Confidence 999998653 4599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCcccc
Q psy7790 349 EIKHVINTEAKIKKREH 365 (367)
Q Consensus 349 ~v~~VI~yd~P~~~~~Y 365 (367)
.|++|||||+|.+|.+|
T Consensus 322 ~V~LVvN~diPr~P~~y 338 (442)
T KOG0340|consen 322 TVELVVNHDIPRDPKDY 338 (442)
T ss_pred ceeEEEecCCCCCHHHH
Confidence 99999999999999998
No 9
>KOG0343|consensus
Probab=100.00 E-value=8.9e-47 Score=350.72 Aligned_cols=294 Identities=21% Similarity=0.296 Sum_probs=257.7
Q ss_pred CCcccHhhhHHHHHHH-HhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccc-----ccCC----c
Q psy7790 68 SNISLLDQHSELKKMA-EAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTS-----WRAP----R 135 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~-----~~~~----~ 135 (367)
..|.+|.++...++++ ++...++|++ |+++||..++|+|++|.|.|||||| |..|++.+ |.+. .
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~tei----Q~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEI----QRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHH----HHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 5899999999999998 5555999999 9999999999999999999999999 88888765 6663 3
Q ss_pred cccCCCHHHHHHHHh-------c----cCeEEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhccc--
Q psy7790 136 CILSLPDQVHDIIRR-------N----LRILVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIP-- 198 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~-------~----~~i~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip-- 198 (367)
+|..++++++-++-. . .++++||.++......+.. +.+||||+.++...-....+.+|+.+++
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 466777766555433 1 4678899887655555555 4799999999998866666788886554
Q ss_pred -----ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHH
Q psy7790 199 -----AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273 (367)
Q Consensus 199 -----~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 273 (367)
+.|...+..|++.+|..|||+|||||-+..+.++++-.+.||.+|.+.......++.++.|+|+.|+-.+|+..|
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 556699999999999999999999999999999999999999999988554444778999999999999999999
Q ss_pred HHHHhhcC-CCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 274 LECLQKTE-PPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 274 ~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
..+|..+. .++|||++|++.+..+++.|... |++..++||.|+|..|..+..+|-..+..||+|||+++||||||.|
T Consensus 305 ~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 305 WSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 99999875 57999999999999999999766 9999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCcccc
Q psy7790 351 KHVINTEAKIKKREH 365 (367)
Q Consensus 351 ~~VI~yd~P~~~~~Y 365 (367)
+|||+||||.++++|
T Consensus 385 dwViQ~DCPedv~tY 399 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTY 399 (758)
T ss_pred ceEEEecCchhHHHH
Confidence 999999999999988
No 10
>KOG0326|consensus
Probab=100.00 E-value=1.6e-46 Score=328.58 Aligned_cols=290 Identities=21% Similarity=0.284 Sum_probs=253.2
Q ss_pred CCcccHhhhHHHHHHHHhc-ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc------------c
Q psy7790 68 SNISLLDQHSELKKMAEAK-KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW------------R 132 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~------------~ 132 (367)
..|.++-+..+++..+-+. .+.|+|+ |++.||.++.|+|+++.|..|+||| |..|++... .
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPi----QeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilV 160 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPI----QEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILV 160 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCc----cccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEe
Confidence 4689999999999988444 4999999 9999999999999999999999999 999988764 4
Q ss_pred CCccccCCCHHHHHHHHhccCeE----EecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhccc-----
Q psy7790 133 APRCILSLPDQVHDIIRRNLRIL----VEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIP----- 198 (367)
Q Consensus 133 ~~~~i~~~~~~~~~~~~~~~~i~----~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip----- 198 (367)
|.++++..+.+.+..+.+.+++. +||+++...+..+.+ +|+|||+++..+ +|....+.....+++
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~-KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAK-KGVADLSDCVILVMDEADKL 239 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHh-cccccchhceEEEechhhhh
Confidence 56666777778888888877654 489998888877766 799999999866 455544444443333
Q ss_pred --ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHH
Q psy7790 199 --AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLEC 276 (367)
Q Consensus 199 --~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 276 (367)
.-|.+-+..++..+|+.+|+++||||+|-.+..|...+|++|..|+....- +...+.|+|.+|.+.+|+..|-.+
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL---tl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL---TLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh---hhcchhhheeeechhhhhhhHHHH
Confidence 234488999999999999999999999999999999999999999987553 577899999999999998888777
Q ss_pred HhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 277 LQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 277 l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
+.+-. .+.||||||...++.++..+.+.|++|..+|+.|-|+.|.+++..|++|.++.|||||++-||||++.|++|||
T Consensus 317 fskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 317 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 76654 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccc
Q psy7790 356 TEAKIKKREH 365 (367)
Q Consensus 356 yd~P~~~~~Y 365 (367)
||+|++.++|
T Consensus 397 FDfpk~aEtY 406 (459)
T KOG0326|consen 397 FDFPKNAETY 406 (459)
T ss_pred cCCCCCHHHH
Confidence 9999999998
No 11
>KOG0345|consensus
Probab=100.00 E-value=1e-45 Score=338.19 Aligned_cols=293 Identities=22% Similarity=0.304 Sum_probs=249.7
Q ss_pred CcccHhh--hHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc------cC----
Q psy7790 69 NISLLDQ--HSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW------RA---- 133 (367)
Q Consensus 69 ~~~~l~~--~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~------~~---- 133 (367)
+|+.|.. +++++++++..+ +..||+ |..+||.++.++||++.|+|||||| |..|++..+ .|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpV----Qa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~v 80 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPV----QAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQV 80 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHH----HHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccce
Confidence 4555554 499999997775 999999 9999999999999999999999999 899987653 11
Q ss_pred CccccCCCHHHHHHHHhc------------cCeEEecCCCCcccccccc------CCCCHHHHHHHHHc-CCCCCChhhh
Q psy7790 134 PRCILSLPDQVHDIIRRN------------LRILVEGDDVPPACCSFRL------MKLPESLVRALEAK-GIKKPTPIQV 194 (367)
Q Consensus 134 ~~~i~~~~~~~~~~~~~~------------~~i~~~g~~~~~~~~~f~~------l~~p~~ll~~l~~~-g~~~pt~iQ~ 194 (367)
...|.+++++++.++... ....+||..+...+..|++ +||||||.+.+... .......++.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 234678888877777652 3567899999999999886 79999999998762 2222223344
Q ss_pred hcc-------cccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechh
Q psy7790 195 QGI-------PAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQE 267 (367)
Q Consensus 195 ~~i-------p~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 267 (367)
.++ ...|..++..|++++|++|.|-|||||.+.++.++++..++||+.|.+.......++..+...|..|+..
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~ 240 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD 240 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH
Confidence 333 3445599999999999999999999999999999999999999999998877655677788899999999
Q ss_pred hHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q psy7790 268 AKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 268 ~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rG 344 (367)
.|...|+.+|..+. .++|||++|+.+++..+..|... +.+++++||.|++..|..+++.|+.....||+|||+++||
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 99999999998865 67999999999999999988654 7899999999999999999999999999999999999999
Q ss_pred CCcCCCCEEEEcCCCCCcccc
Q psy7790 345 LDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 345 lDi~~v~~VI~yd~P~~~~~Y 365 (367)
||||+|++||+||+|.++..|
T Consensus 321 lDip~iD~VvQ~DpP~~~~~F 341 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSF 341 (567)
T ss_pred CCCCCceEEEecCCCCChhHH
Confidence 999999999999999998876
No 12
>KOG0342|consensus
Probab=100.00 E-value=1e-45 Score=340.28 Aligned_cols=294 Identities=22% Similarity=0.298 Sum_probs=250.0
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccc-----ccCC----c
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTS-----WRAP----R 135 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~-----~~~~----~ 135 (367)
..|..+.+++..++++...+ ++.|++ |++.|+.++.|+|+++.|.|||||| |.+|..+. |.|. .
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~V----Q~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPV----QQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHH----HHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 35778888999999996666 899999 9999999999999999999999999 77776654 3332 2
Q ss_pred cccCCCHHHHHHHHhc------------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhccc
Q psy7790 136 CILSLPDQVHDIIRRN------------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIP 198 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~~------------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip 198 (367)
.|.+++++.+-++... +++.+||.+.......+.. +++||||+++|.+..-......+..+++
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 3567777776665542 3567789877654444433 6899999999997643333333444443
Q ss_pred -------ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcC-CCEEEEeCCCCccCCCCcceEEEEEechhhHH
Q psy7790 199 -------AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV-KPITINVGRAGKIMPSMNVVQEVEYVKQEAKI 270 (367)
Q Consensus 199 -------~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~ 270 (367)
..|.+++..|++.+|.+||++|||||.|.+|.++++..|. +|+.|++...+...+...+.|.|+.++...++
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 3455999999999999999999999999999999999776 59999998888877888999999999999999
Q ss_pred HHHHHHHhhcC--CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 271 VYLLECLQKTE--PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 271 ~~l~~~l~~~~--~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
..++.+|+++- .++||||+|+..+..+++.|+...++|..|||+++|..|..+...|++.+..|||||||+|||+|||
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 99999998864 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCcccc
Q psy7790 349 EIKHVINTEAKIKKREH 365 (367)
Q Consensus 349 ~v~~VI~yd~P~~~~~Y 365 (367)
+|++||+||+|+++++|
T Consensus 398 ~V~~VvQ~~~P~d~~~Y 414 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQY 414 (543)
T ss_pred CceEEEEeCCCCCHHHH
Confidence 99999999999999998
No 13
>KOG0347|consensus
Probab=100.00 E-value=6e-45 Score=338.48 Aligned_cols=291 Identities=20% Similarity=0.274 Sum_probs=242.7
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc-ccccccccccCCcc--ccCcccccc-------------
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET-KALMGVAELAKGIQ--YNDPIKTSW------------- 131 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g-~d~~~~a~TgsGKT--~~~p~~~~~------------- 131 (367)
.+..|.+..++++++...+ ..||+| |...||.+..| .|++|.|+|||||| |.+||+..+
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~I----Qsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEI----QSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccc----hhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 4677889999999997666 999999 99999999999 89999999999999 999998821
Q ss_pred -----cCCccccCCCHHHHHHHHhcc-----------CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCC--CC
Q psy7790 132 -----RAPRCILSLPDQVHDIIRRNL-----------RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGI--KK 188 (367)
Q Consensus 132 -----~~~~~i~~~~~~~~~~~~~~~-----------~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~--~~ 188 (367)
.|-.+|.+++++++-++.+++ ..++||..+..|-+-+.. ++||||+.+.+.+.++ ..
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 223567899999988888752 335688777666665554 7899999999987764 22
Q ss_pred CChhhhhcccccch-------HHHHHHHhhcc-----CCceEEeecCCCc---------------------HHHHHHHHH
Q psy7790 189 PTPIQVQGIPAALS-------EDVRTIFSFFR-----GQRQTLLFSATMP---------------------KKIQNFARS 235 (367)
Q Consensus 189 pt~iQ~~~ip~~l~-------~~v~~Il~~l~-----~~~Q~il~SAT~~---------------------~~v~~l~~~ 235 (367)
...+...+++.+-. +++..|++.++ .++||++||||++ ..++.+.+.
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 33333444443322 77888888775 5689999999996 224444444
Q ss_pred --hcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEec
Q psy7790 236 --ALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHG 313 (367)
Q Consensus 236 --~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg 313 (367)
+..+|.+|....... +...+....+.|+..+|..+|+.+|..+++++|||||++.++.+|+-+|...+++...+|+
T Consensus 418 ig~~~kpkiiD~t~q~~--ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSA--TASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred hCccCCCeeEecCcchh--HHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 234678888887776 6777888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 314 GKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 314 ~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
.|.|.+|.+.+++|++....||||||||+||||||+|+|||||.+|++.+.|
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiY 547 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIY 547 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCcccee
Confidence 9999999999999999999999999999999999999999999999999988
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2e-42 Score=342.87 Aligned_cols=296 Identities=27% Similarity=0.351 Sum_probs=240.9
Q ss_pred ccccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc---------
Q psy7790 64 WGRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW--------- 131 (367)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~--------- 131 (367)
+.+..+|+.+.+++.+++++...+ +.||++ |.++||.+++|+|++++|+|||||| |.+|++.+.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~i----Q~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~ 201 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPI----QVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG 201 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC
Confidence 345578999999999999997766 889999 9999999999999999999999999 788876542
Q ss_pred -cCCccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhh
Q psy7790 132 -RAPRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQV 194 (367)
Q Consensus 132 -~~~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~ 194 (367)
.|...+.+++++++.++... ..+.+||.+...+...+.. ++||++|++.+... ......+..
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~ 280 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTY 280 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcE
Confidence 12345678888877776543 1234566655444443332 68999999998753 222333333
Q ss_pred hccc-------ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcC-CCEEEEeCCCCccCCCCcceEEEEEech
Q psy7790 195 QGIP-------AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV-KPITINVGRAGKIMPSMNVVQEVEYVKQ 266 (367)
Q Consensus 195 ~~ip-------~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 266 (367)
-+++ ..+..+++.|+..++.++|+++||||+|.++..++..++. +++.+.++.... ....++.|.+..+..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l-~~~~~i~q~~~~~~~ 359 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDL-TACHNIKQEVFVVEE 359 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCcc-ccCCCeeEEEEEEec
Confidence 3333 2344788999999999999999999999999999999886 588888765542 245688899988888
Q ss_pred hhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q psy7790 267 EAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASK 343 (367)
Q Consensus 267 ~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~r 343 (367)
..|...|..++.. ...++||||+|++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+.+||||||+++|
T Consensus 360 ~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~r 439 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASR 439 (545)
T ss_pred hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhc
Confidence 8888888887765 3568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCEEEEcCCCCCcccc
Q psy7790 344 GLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 344 GlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|||||+|++|||||+|.++++|
T Consensus 440 GIDi~~v~~VI~~d~P~s~~~y 461 (545)
T PTZ00110 440 GLDVKDVKYVINFDFPNQIEDY 461 (545)
T ss_pred CCCcccCCEEEEeCCCCCHHHH
Confidence 9999999999999999999887
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.6e-42 Score=332.59 Aligned_cols=292 Identities=21% Similarity=0.282 Sum_probs=240.3
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----------
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR----------- 132 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~----------- 132 (367)
..+|+.|++++.+.+++...+ ..|+++ |+++||.+++|+|++++|||||||| |..|++..+.
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~i----Q~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPI----QALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 467999999999999997766 899999 9999999999999999999999999 7788765431
Q ss_pred -CCccccCCCHHHHHHHHhc-------c----CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhh
Q psy7790 133 -APRCILSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQ 195 (367)
Q Consensus 133 -~~~~i~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~ 195 (367)
+...+..++++++.++.+. . .+.+||.....+...+.. ++||+++++.+.... .....+..-
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~-~~l~~v~~l 161 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH-INLGAIQVV 161 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccccEE
Confidence 2345778888777665432 2 234566655444443332 789999999987543 333444444
Q ss_pred ccccc-------chHHHHHHHhhcc--CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech
Q psy7790 196 GIPAA-------LSEDVRTIFSFFR--GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ 266 (367)
Q Consensus 196 ~ip~~-------l~~~v~~Il~~l~--~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 266 (367)
+++.+ +..+++.|++.++ ..+|+++||||++..+..++..++.+|..+.+..... ...++.+.+.++..
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~--~~~~i~~~~~~~~~ 239 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK--TGHRIKEELFYPSN 239 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc--CCCceeEEEEeCCH
Confidence 44432 3378888998887 4678999999999999999999999999988876554 55677888888888
Q ss_pred hhHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccC
Q psy7790 267 EAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGL 345 (367)
Q Consensus 267 ~~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGl 345 (367)
..|...|..++... ..++||||+|+..|+.++..|...|+++..+||+|++.+|..+++.|++|+++||||||+++|||
T Consensus 240 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 240 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 88998888888764 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCEEEEcCCCCCcccc
Q psy7790 346 DFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 346 Di~~v~~VI~yd~P~~~~~Y 365 (367)
|+|+|++|||||+|.++++|
T Consensus 320 Dip~v~~VI~~d~P~s~~~y 339 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDY 339 (423)
T ss_pred CccccCEEEEeCCCCchhhe
Confidence 99999999999999999988
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.3e-42 Score=341.03 Aligned_cols=292 Identities=21% Similarity=0.290 Sum_probs=240.6
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc------------c
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW------------R 132 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~------------~ 132 (367)
..|+.|++++.+++++.+.+ +.||++ |+++||.+++|+|++++|+|||||| |.+|++..+ .
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpi----Q~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~ 84 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPI----QALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPED 84 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCC
Confidence 46999999999999997777 889999 9999999999999999999999999 888877643 1
Q ss_pred CCccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhc
Q psy7790 133 APRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQG 196 (367)
Q Consensus 133 ~~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ 196 (367)
+...+..++.+++.++.+. ....+||.+...+...+.. ++||++|++.+...++.....+..-+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV 164 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeE
Confidence 3345677787776665542 2234566665444333332 68999999998765543333333333
Q ss_pred ccc-------cchHHHHHHHhhccC--CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechh
Q psy7790 197 IPA-------ALSEDVRTIFSFFRG--QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQE 267 (367)
Q Consensus 197 ip~-------~l~~~v~~Il~~l~~--~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 267 (367)
++. .+..++..|+..++. .+|+++||||++..+..++..++.++..+.+..... ....+.+.+..+...
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~ 242 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI--TAARVRQRIYFPADE 242 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccc--cccceeEEEEecCHH
Confidence 333 234788889988876 789999999999999999999999988777665544 556788888888888
Q ss_pred hHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCC
Q psy7790 268 AKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLD 346 (367)
Q Consensus 268 ~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD 346 (367)
.|...|+.++... ..++||||+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++||||||+++||||
T Consensus 243 ~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGID 322 (572)
T PRK04537 243 EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLH 322 (572)
T ss_pred HHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCC
Confidence 9999999988765 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEcCCCCCcccc
Q psy7790 347 FEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 347 i~~v~~VI~yd~P~~~~~Y 365 (367)
+|+|++|||||+|.++++|
T Consensus 323 ip~V~~VInyd~P~s~~~y 341 (572)
T PRK04537 323 IDGVKYVYNYDLPFDAEDY 341 (572)
T ss_pred ccCCCEEEEcCCCCCHHHH
Confidence 9999999999999999888
No 17
>KOG0335|consensus
Probab=100.00 E-value=9e-43 Score=325.45 Aligned_cols=290 Identities=27% Similarity=0.383 Sum_probs=245.6
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc--------------
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-------------- 131 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-------------- 131 (367)
.|+...+.+.+...+.-.+ ..||++ |+.+||.+..|+|++++|+|||||| |..|+....
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpv----Qk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~ 150 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPV----QKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGG 150 (482)
T ss_pred cccccchhHHHhhccccccccCCCcc----eeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCC
Confidence 6777777777777764444 888999 9999999999999999999999999 888886651
Q ss_pred -cCCccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhh
Q psy7790 132 -RAPRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQV 194 (367)
Q Consensus 132 -~~~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~ 194 (367)
.|...|.+++++++.++... ..+.+||.++..+.+.... ++|||+|.+.+....+.. ..+-.
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l-~~~k~ 229 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISL-DNCKF 229 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeeh-hhCcE
Confidence 24556889999988887763 2345678777666665544 689999999988655432 11112
Q ss_pred -------hccc-ccchHHHHHHHhhcc----CCceEEeecCCCcHHHHHHHHHhcCC-CEEEEeCCCCccCCCCcceEEE
Q psy7790 195 -------QGIP-AALSEDVRTIFSFFR----GQRQTLLFSATMPKKIQNFARSALVK-PITINVGRAGKIMPSMNVVQEV 261 (367)
Q Consensus 195 -------~~ip-~~l~~~v~~Il~~l~----~~~Q~il~SAT~~~~v~~l~~~~l~~-~~~i~~~~~~~~~~~~~i~~~~ 261 (367)
++++ ..|.++|++|+.+.. ..+|+++||||+|..++.++..++.+ .+.+.++..+. .+.++.|.+
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~--~~~ni~q~i 307 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS--TSENITQKI 307 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc--ccccceeEe
Confidence 2233 445599999999885 47999999999999999999999986 88899998888 899999999
Q ss_pred EEechhhHHHHHHHHHhhcC-----C-----CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 262 EYVKQEAKIVYLLECLQKTE-----P-----PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 262 ~~~~~~~k~~~l~~~l~~~~-----~-----~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
.+|.+..|...|+++|.... + .++|||+|++.|..++.+|...++++..+||..+|.+|.++++.|++|+
T Consensus 308 ~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~ 387 (482)
T KOG0335|consen 308 LFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK 387 (482)
T ss_pred eeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC
Confidence 99999999999999998532 2 5999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 332 KDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 332 ~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+.|||||++++||||||+|+||||||||.+..+|
T Consensus 388 ~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~Y 421 (482)
T KOG0335|consen 388 APVLVATNVAARGLDIPNVKHVINYDMPADIDDY 421 (482)
T ss_pred cceEEEehhhhcCCCCCCCceeEEeecCcchhhH
Confidence 9999999999999999999999999999999888
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.5e-41 Score=332.35 Aligned_cols=290 Identities=20% Similarity=0.302 Sum_probs=241.5
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-----CccccC
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-----PRCILS 139 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-----~~~i~~ 139 (367)
.+|+.|++++.+.+++...+ +.++++ |+++|+.+++|+|++++|||||||| |.+|++..+.. ...+..
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~i----Q~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~ 79 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPI----QAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLC 79 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEe
Confidence 46999999999999998777 889999 9999999999999999999999999 78888776532 345667
Q ss_pred CCHHHHHHHHhc------------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhcc-----
Q psy7790 140 LPDQVHDIIRRN------------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGI----- 197 (367)
Q Consensus 140 ~~~~~~~~~~~~------------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~i----- 197 (367)
++++++.++... ....+||.++..+...+.. ++||+++.+++.+..+. ...+..-++
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~-l~~l~~lViDEad~ 158 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLD-LDALNTLVLDEADR 158 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCcc-HHHCCEEEEECHHH
Confidence 777766655432 1224566666555555543 68999999998764432 222222222
Q ss_pred --cccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHH
Q psy7790 198 --PAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275 (367)
Q Consensus 198 --p~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 275 (367)
...+..++..++..++..+|+++||||+|+.+..++..++.+|..+.+..... ...+.+.++.++...|...|..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD---LPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC---CCCeeEEEEEeCcHHHHHHHHH
Confidence 23345889999999999999999999999999999999999999988866543 4568889999988889999999
Q ss_pred HHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 276 CLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 276 ~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
++.... .++||||+|+..|+.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+|++||
T Consensus 236 ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 236 LLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 887654 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccc
Q psy7790 355 NTEAKIKKREH 365 (367)
Q Consensus 355 ~yd~P~~~~~Y 365 (367)
|||+|.+++.|
T Consensus 316 ~~d~p~~~~~y 326 (460)
T PRK11776 316 NYELARDPEVH 326 (460)
T ss_pred EecCCCCHhHh
Confidence 99999999887
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-41 Score=339.15 Aligned_cols=292 Identities=21% Similarity=0.302 Sum_probs=242.2
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCcccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCIL 138 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i~ 138 (367)
..+|++|++++.+++++.+.+ +.|+++ |+++|+.++.|+|++++|+|||||| |.+|++..+. +...+.
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpi----Q~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL 80 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPI----QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVL 80 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 346999999999999998777 889999 9999999999999999999999999 7788765532 223567
Q ss_pred CCCHHHHHHHHhc------------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhcc----
Q psy7790 139 SLPDQVHDIIRRN------------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGI---- 197 (367)
Q Consensus 139 ~~~~~~~~~~~~~------------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~i---- 197 (367)
+++.+++.++... ....++|.++..++..+.. ++||+++++++....+. ...+..-++
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~-l~~l~~lVlDEAd 159 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLD-LSKLSGLVLDEAD 159 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc-hhhceEEEeccHH
Confidence 7777766655432 1224467665555544433 68999999998764332 222322222
Q ss_pred ---cccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHH
Q psy7790 198 ---PAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274 (367)
Q Consensus 198 ---p~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 274 (367)
...+.+++..|+..++..+|+++||||+|..+..+++.++.++..+.+..... ...++.|.+..+....|...|.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~--~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT--TRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc--cCCceEEEEEEechhhHHHHHH
Confidence 33344889999999999999999999999999999999999999888776554 5668889988888889999999
Q ss_pred HHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 275 ECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 275 ~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
.+|.... .++||||+|+..++.++..|...|+.+..+||+|++.+|.+++++|++|+++||||||+++||||+|+|++|
T Consensus 238 ~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 9887654 579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccc
Q psy7790 354 INTEAKIKKREH 365 (367)
Q Consensus 354 I~yd~P~~~~~Y 365 (367)
||||+|.+++.|
T Consensus 318 I~~d~P~~~e~y 329 (629)
T PRK11634 318 VNYDIPMDSESY 329 (629)
T ss_pred EEeCCCCCHHHH
Confidence 999999999988
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3e-41 Score=329.25 Aligned_cols=290 Identities=27% Similarity=0.428 Sum_probs=237.9
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-----------C
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-----------P 134 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-----------~ 134 (367)
+|+.|++++.+.+++.+.+ ..|+++ |+++|+.+++|+|++++|||||||| |.+|++..+.. .
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~i----Q~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPI----QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCce
Confidence 5889999999999997776 899999 9999999999999999999999999 88888765421 2
Q ss_pred ccccCCCHHHHHHHHhcc-----------CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhccc
Q psy7790 135 RCILSLPDQVHDIIRRNL-----------RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIP 198 (367)
Q Consensus 135 ~~i~~~~~~~~~~~~~~~-----------~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip 198 (367)
..+..++.+++.++...+ ...+||.+...+...+.. ++||+++++.+....+ ....+..-+++
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~-~l~~v~~lViD 156 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAV-KLDQVEILVLD 156 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCc-ccccceEEEee
Confidence 356777777766554421 234566665544433332 6899999998765433 23444444443
Q ss_pred cc-------chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHH
Q psy7790 199 AA-------LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271 (367)
Q Consensus 199 ~~-------l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 271 (367)
.+ +..+++.++..++..+|+++||||++.++..++..++.++..+.+..... ....+.+.+.+++...+..
T Consensus 157 Eah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~k~~ 234 (456)
T PRK10590 157 EADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNT--ASEQVTQHVHFVDKKRKRE 234 (456)
T ss_pred cHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccc--cccceeEEEEEcCHHHHHH
Confidence 32 33778889999999999999999999999999999999999888766544 5567888888888888887
Q ss_pred HHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 272 YLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 272 ~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
.|..++.... .++||||+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|
T Consensus 235 ~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v 314 (456)
T PRK10590 235 LLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 (456)
T ss_pred HHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccC
Confidence 7777776543 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCcccc
Q psy7790 351 KHVINTEAKIKKREH 365 (367)
Q Consensus 351 ~~VI~yd~P~~~~~Y 365 (367)
++|||||+|.++++|
T Consensus 315 ~~VI~~~~P~~~~~y 329 (456)
T PRK10590 315 PHVVNYELPNVPEDY 329 (456)
T ss_pred CEEEEeCCCCCHHHh
Confidence 999999999999887
No 21
>KOG0336|consensus
Probab=100.00 E-value=6.4e-42 Score=308.38 Aligned_cols=292 Identities=21% Similarity=0.291 Sum_probs=240.1
Q ss_pred CCccc-HhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc-----------c
Q psy7790 68 SNISL-LDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-----------R 132 (367)
Q Consensus 68 ~~~~~-l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-----------~ 132 (367)
-.|.+ +...+++++.+...+ .+|||+ |.++.|.+++|.|++++|+||+||| |..|-..++ .
T Consensus 219 ctFddAFq~~pevmenIkK~GFqKPtPI----qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKKTGFQKPTPI----QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CcHHHHHhhhHHHHHHHHhccCCCCCcc----hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 34554 445578888885555 999999 9999999999999999999999999 777765553 1
Q ss_pred CCccccCCCHHHHHHHHhc----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhh----
Q psy7790 133 APRCILSLPDQVHDIIRRN----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQ---- 193 (367)
Q Consensus 133 ~~~~i~~~~~~~~~~~~~~----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ---- 193 (367)
|..++..++++++.++.-. ..+.+||.+-+.++..++. +.+|+++.+..... +.....|-
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlVl 373 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLVL 373 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEEe
Confidence 2234567788887776642 2345688777777776664 67999999886543 32222222
Q ss_pred ---hhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHH
Q psy7790 194 ---VQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKI 270 (367)
Q Consensus 194 ---~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~ 270 (367)
-.++++.|.++++.|+--++++||+++.|||||..+..++.+|+++|..+.++.... .+...+.|.++.-.+.+|+
T Consensus 374 DEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL-~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 374 DEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDL-VAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred cchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccce-eeeeeeeeeEEecccHHHH
Confidence 245566777999999999999999999999999999999999999999999988765 3456788888666667777
Q ss_pred HHHHHHHhhcC--CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 271 VYLLECLQKTE--PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 271 ~~l~~~l~~~~--~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
..+..++.... .++||||..+..++.|...|...|+++.++||+-+|.+|+.+++.|++|+++||||||+++||||++
T Consensus 453 ~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 453 EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVP 532 (629)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCch
Confidence 66666666543 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCcccc
Q psy7790 349 EIKHVINTEAKIKKREH 365 (367)
Q Consensus 349 ~v~~VI~yd~P~~~~~Y 365 (367)
+|.||+|||+|.+++.|
T Consensus 533 DiTHV~NyDFP~nIeeY 549 (629)
T KOG0336|consen 533 DITHVYNYDFPRNIEEY 549 (629)
T ss_pred hcceeeccCCCccHHHH
Confidence 99999999999999988
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-41 Score=331.33 Aligned_cols=293 Identities=24% Similarity=0.363 Sum_probs=240.0
Q ss_pred cccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc----------
Q psy7790 65 GRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---------- 131 (367)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---------- 131 (367)
.+..+|..+++++.+++.+...+ ..|+++ |.++|+.++.|+|++++|+|||||| |.+|++.+.
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpi----Q~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPI----QMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 45568999999999999997666 899999 9999999999999999999999999 888876542
Q ss_pred --cCCccccCCCHHHHHHHHhc-------c----CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhh
Q psy7790 132 --RAPRCILSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQ 193 (367)
Q Consensus 132 --~~~~~i~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ 193 (367)
.+...+..++++++.++... + ...+||.....++..+.. ++||+++++.+.+..+. ...+.
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~-l~~v~ 272 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIE-LDNVS 272 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc-chhee
Confidence 12345677777776665432 1 234577766666554433 68999999998765332 23333
Q ss_pred hhcccc-------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech
Q psy7790 194 VQGIPA-------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ 266 (367)
Q Consensus 194 ~~~ip~-------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 266 (367)
.-+++. .+.+++..|+..++ .+|+++||||++..+..++..++.++..+.++.... ....+.+.+.++..
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~--~~~~v~q~~~~~~~ 349 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR--PNKAVKQLAIWVET 349 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC--CCcceeEEEEeccc
Confidence 323322 24477788888774 689999999999999999999999999999887766 66778899999988
Q ss_pred hhHHHHHHHHHhhc---CCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q psy7790 267 EAKIVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS 342 (367)
Q Consensus 267 ~~k~~~l~~~l~~~---~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~ 342 (367)
..|...|.+++... .+++||||+|+..++.++..|.. .|+++..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~ 429 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLG 429 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhh
Confidence 88888888888653 36899999999999999999975 699999999999999999999999999999999999999
Q ss_pred ccCCcCCCCEEEEcCCCCCcccc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
||||+|+|++|||||+|.++++|
T Consensus 430 rGiDip~v~~VI~~d~P~s~~~y 452 (518)
T PLN00206 430 RGVDLLRVRQVIIFDMPNTIKEY 452 (518)
T ss_pred ccCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999999999888
No 23
>KOG0348|consensus
Probab=100.00 E-value=3e-41 Score=312.99 Aligned_cols=294 Identities=19% Similarity=0.284 Sum_probs=233.5
Q ss_pred CCcccHhhhHHHHHHHHhcc--cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC----------
Q psy7790 68 SNISLLDQHSELKKMAEAKK--ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA---------- 133 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~---------- 133 (367)
..|+.|++|+.+...++... ..||-+ |+++||.+++|+|+++.|+|||||| |.+|+.+.+..
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsV----Qkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSV----QKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchH----hhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 57999999999999985444 788999 9999999999999999999999999 99999887421
Q ss_pred -CccccCCCHHHHHHHHh-------ccCeE-----EecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhh
Q psy7790 134 -PRCILSLPDQVHDIIRR-------NLRIL-----VEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQ 195 (367)
Q Consensus 134 -~~~i~~~~~~~~~~~~~-------~~~i~-----~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~ 195 (367)
-.++..++++++.++.. .++.+ +||..-...--.++. +||||||+|+|+...-...+.++.-
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 23466777776666544 34444 455433222222222 7999999999987654444555544
Q ss_pred cccc-------cchHHHHHHHhhc-------------cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCc-----
Q psy7790 196 GIPA-------ALSEDVRTIFSFF-------------RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGK----- 250 (367)
Q Consensus 196 ~ip~-------~l~~~v~~Il~~l-------------~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~----- 250 (367)
+++. .|.++|..|++.+ +.++|.+|+|||++..|..++...|.||+.|..+....
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 4443 3447888888776 23589999999999999999999999999998322110
Q ss_pred ------------------cCCCCcceEEEEEechhhHHHHHHHHHhhc-----CCCeEEeeccHHHHHHHHHHHHhC---
Q psy7790 251 ------------------IMPSMNVVQEVEYVKQEAKIVYLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLK--- 304 (367)
Q Consensus 251 ------------------~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-----~~~~iVF~~s~~~~~~l~~~L~~~--- 304 (367)
...+.++.|+|..|++.-++..|..+|.+. ..++|||+++.+.+++-+..|...
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 124557889999999999999999988753 347999999999999999888432
Q ss_pred -------------------CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 305 -------------------GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 305 -------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+.++.-+||+|+|++|..++..|+..+-.||+||||++||||+|+|++||+||+|.++.+|
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ady 531 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADY 531 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999988
No 24
>KOG0327|consensus
Probab=100.00 E-value=1.2e-40 Score=299.13 Aligned_cols=293 Identities=19% Similarity=0.284 Sum_probs=254.2
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-----Ccccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-----PRCIL 138 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-----~~~i~ 138 (367)
-.+|.++++.+.|++.+.+-| ++|+.+ |+.+|.++..|.|+.+++++|+||| |..+++++... ...+.
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaI----QqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalil 100 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAI----QQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALIL 100 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHH----HhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHh
Confidence 358999999999999997777 999999 9999999999999999999999999 88888777533 23467
Q ss_pred CCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc------CCCCHHHHHHHHHcCCCCCChhhhh------
Q psy7790 139 SLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL------MKLPESLVRALEAKGIKKPTPIQVQ------ 195 (367)
Q Consensus 139 ~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~------l~~p~~ll~~l~~~g~~~pt~iQ~~------ 195 (367)
+++++++.++.+. .+..+||...+........ +|+|+++.+.+... ...+.+++.-
T Consensus 101 aPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEAD 179 (397)
T ss_pred cchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchH
Confidence 7788777776653 3446788777644333222 79999999998755 4444555543
Q ss_pred -cccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHH
Q psy7790 196 -GIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274 (367)
Q Consensus 196 -~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 274 (367)
+++..+.+++..|++++|.+.|++++|||+|.++....+.++++|+.|.+..... +...++|+++.+.+++|+..|.
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~l--tl~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDEL--TLEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhh--hhhheeeeeeeccccccccHHH
Confidence 3344566999999999999999999999999999999999999999999998886 7889999999999999999999
Q ss_pred HHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 275 ECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 275 ~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
.+.. .-.+.+|||||+..+..+...|..+++.+.++||.|.+.+|..++..|++|..+|||+|++++||||+.++..||
T Consensus 258 dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 258 DLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred HHHH-hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee
Confidence 9988 567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCccccCC
Q psy7790 355 NTEAKIKKREHGV 367 (367)
Q Consensus 355 ~yd~P~~~~~Y~~ 367 (367)
||++|.+.++|++
T Consensus 337 nydlP~~~~~yih 349 (397)
T KOG0327|consen 337 NYDLPARKENYIH 349 (397)
T ss_pred eeccccchhhhhh
Confidence 9999999999974
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.1e-39 Score=314.11 Aligned_cols=290 Identities=20% Similarity=0.309 Sum_probs=233.6
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc---------CCcc
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR---------APRC 136 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~---------~~~~ 136 (367)
.|++|++++.+++.+...+ ..|+++ |.++|+.+++|+|++++|+||+||| |.+|+++++. +...
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~i----Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAI----QAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEE
Confidence 5899999999999997776 889998 9999999999999999999999999 7788776531 1234
Q ss_pred ccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhcc---
Q psy7790 137 ILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGI--- 197 (367)
Q Consensus 137 i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~i--- 197 (367)
+..++.+++.++.+. ....+||.....+...+.. ++||+++++.+....|.. ..+..-++
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~-~~v~~lViDEa 156 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDC-RAVETLILDEA 156 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCc-ccCCEEEEECH
Confidence 567777666554331 2234566655444333322 689999999988766542 22222222
Q ss_pred ----cccchHHHHHHHhhccCCceEEeecCCCcH-HHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech-hhHHH
Q psy7790 198 ----PAALSEDVRTIFSFFRGQRQTLLFSATMPK-KIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ-EAKIV 271 (367)
Q Consensus 198 ----p~~l~~~v~~Il~~l~~~~Q~il~SAT~~~-~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~ 271 (367)
+..+...+..|...++..+|+++||||++. .+..++..++.++..+....... ...++.+.+..++. ..|..
T Consensus 157 h~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~k~~ 234 (434)
T PRK11192 157 DRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR--ERKKIHQWYYRADDLEHKTA 234 (434)
T ss_pred HHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc--cccCceEEEEEeCCHHHHHH
Confidence 233457888888888888999999999985 48888888999999988876655 56678888877764 56777
Q ss_pred HHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 272 YLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 272 ~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
.|..++.. ...++||||+|+..|+.++..|...|+.+..+||+|++.+|..+++.|++|+++||||||+++||||+|+|
T Consensus 235 ~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v 314 (434)
T PRK11192 235 LLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDV 314 (434)
T ss_pred HHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCC
Confidence 77777776 44689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCcccc
Q psy7790 351 KHVINTEAKIKKREH 365 (367)
Q Consensus 351 ~~VI~yd~P~~~~~Y 365 (367)
++|||||+|.+++.|
T Consensus 315 ~~VI~~d~p~s~~~y 329 (434)
T PRK11192 315 SHVINFDMPRSADTY 329 (434)
T ss_pred CEEEEECCCCCHHHH
Confidence 999999999999887
No 26
>KOG0339|consensus
Probab=100.00 E-value=7.3e-40 Score=301.96 Aligned_cols=293 Identities=28% Similarity=0.394 Sum_probs=248.1
Q ss_pred ccCCcccHhhhHHHHHHHHhc-ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc----------c
Q psy7790 66 RMSNISLLDQHSELKKMAEAK-KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW----------R 132 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~----------~ 132 (367)
+-.+|..++....|..+.... .+.||++ |.+++|..+.|+|+++.|.|||||| |..|++.+. .
T Consensus 221 pvtsfeh~gfDkqLm~airk~Ey~kptpi----q~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 221 PVTSFEHFGFDKQLMTAIRKSEYEKPTPI----QCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CcchhhhcCchHHHHHHHhhhhcccCCcc----cccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 445788888889999887433 3899999 9999999999999999999999999 888887763 2
Q ss_pred CCccccCCCHHHHHHHHhc-------cC----eEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhh--
Q psy7790 133 APRCILSLPDQVHDIIRRN-------LR----ILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQV-- 194 (367)
Q Consensus 133 ~~~~i~~~~~~~~~~~~~~-------~~----i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~-- 194 (367)
|...|.+++++.+.+++.. ++ ..+||...-.|...++. +.||+||++.++-++... ..+-.
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~-~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNL-SRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccc-eeeeEEE
Confidence 3344678888777776643 22 34577777777776664 689999999988655321 11111
Q ss_pred -----hcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech-hh
Q psy7790 195 -----QGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ-EA 268 (367)
Q Consensus 195 -----~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~ 268 (367)
.++...|..+|+.|..+++++||+++||||++..+..+++.+|.+|+.+..+.-+. .+..|.|.+..|.. ..
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vge--an~dITQ~V~V~~s~~~ 453 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGE--ANEDITQTVSVCPSEEK 453 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhc--cccchhheeeeccCcHH
Confidence 33445566999999999999999999999999999999999999999998887776 78899999998865 57
Q ss_pred HHHHHHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCC
Q psy7790 269 KIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLD 346 (367)
Q Consensus 269 k~~~l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD 346 (367)
|+.+|++.|... .+++|||+..+.+++.|+..|+.+|++|..+||+|+|.+|.+++..|+.+.+.|||+||+++||+|
T Consensus 454 Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargld 533 (731)
T KOG0339|consen 454 KLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLD 533 (731)
T ss_pred HHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCC
Confidence 899999998875 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEcCCCCCcccc
Q psy7790 347 FEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 347 i~~v~~VI~yd~P~~~~~Y 365 (367)
|++++.|||||+-++++.|
T Consensus 534 I~~ikTVvnyD~ardIdth 552 (731)
T KOG0339|consen 534 IPSIKTVVNYDFARDIDTH 552 (731)
T ss_pred ccccceeecccccchhHHH
Confidence 9999999999999998876
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-38 Score=311.37 Aligned_cols=292 Identities=23% Similarity=0.301 Sum_probs=235.5
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----------
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR----------- 132 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~----------- 132 (367)
...|..+.+++.+.+++...+ ..++++ |.++|+.+++|+|++++|+|||||| |.+|++..+.
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~i----Q~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~ 161 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPI----QAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMG 161 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccC
Confidence 457999999999999997777 888988 9999999999999999999999999 8888776531
Q ss_pred -CCccccCCCHHHHHHHHhc-------cC----eEEecCCCCcccccccc------CCCCHHHHHHHHHcCCCCCChhhh
Q psy7790 133 -APRCILSLPDQVHDIIRRN-------LR----ILVEGDDVPPACCSFRL------MKLPESLVRALEAKGIKKPTPIQV 194 (367)
Q Consensus 133 -~~~~i~~~~~~~~~~~~~~-------~~----i~~~g~~~~~~~~~f~~------l~~p~~ll~~l~~~g~~~pt~iQ~ 194 (367)
+...+..++.+++.++.+. ++ ..+||.+...+...+.. +++|++|++.+.... .....+..
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-~~l~~l~~ 240 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-VHLDMVEV 240 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-cccccCce
Confidence 2335667777666655442 12 23566666555544432 689999998765432 22233333
Q ss_pred hcccc-------cchHHHHHHHhhccC--CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec
Q psy7790 195 QGIPA-------ALSEDVRTIFSFFRG--QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK 265 (367)
Q Consensus 195 ~~ip~-------~l~~~v~~Il~~l~~--~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 265 (367)
-+++. .+..+++.|+..++. .+|+++||||++..+..++..++.++..+.+..... ...++.+.+..+.
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~ 318 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV--ASDTVEQHVYAVA 318 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC--CCCcccEEEEEec
Confidence 33322 222667788888753 689999999999999999999999999888766654 5567788888888
Q ss_pred hhhHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q psy7790 266 QEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 266 ~~~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rG 344 (367)
...+...|..++.... .++||||+++..|+.++..|...|+.+..+||++++.+|.++++.|++|+++|||||++++||
T Consensus 319 ~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 319 GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 8888888888887654 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCEEEEcCCCCCcccc
Q psy7790 345 LDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 345 lDi~~v~~VI~yd~P~~~~~Y 365 (367)
||||+|++|||||+|.++.+|
T Consensus 399 IDi~~v~~VI~~~~P~s~~~y 419 (475)
T PRK01297 399 IHIDGISHVINFTLPEDPDDY 419 (475)
T ss_pred CcccCCCEEEEeCCCCCHHHH
Confidence 999999999999999999887
No 28
>KOG0346|consensus
Probab=100.00 E-value=2.7e-39 Score=293.84 Aligned_cols=293 Identities=18% Similarity=0.238 Sum_probs=241.1
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc-----------cC
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-----------RA 133 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-----------~~ 133 (367)
..|.++++++.+++++...| +.||-+ |..+||.+++|||+++.|.|||||| |.+|+++.+ .|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlI----Qs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLI----QSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchh----hhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccc
Confidence 68999999999999997777 999999 9999999999999999999999999 999998763 23
Q ss_pred CccccCCCHHHHHHHHhccCe-------EEec----CCCC-----cccccccc--CCCCHHHHHHHHHcCCCCCChhhhh
Q psy7790 134 PRCILSLPDQVHDIIRRNLRI-------LVEG----DDVP-----PACCSFRL--MKLPESLVRALEAKGIKKPTPIQVQ 195 (367)
Q Consensus 134 ~~~i~~~~~~~~~~~~~~~~i-------~~~g----~~~~-----~~~~~f~~--l~~p~~ll~~l~~~g~~~pt~iQ~~ 195 (367)
...|..++.+.++++.+.+.- .+.- +++. ..+...-+ ++||+++++++...-....+.+-..
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 455788888888877663110 0000 1111 11111111 6899999999875443333333333
Q ss_pred ccc-------ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhh
Q psy7790 196 GIP-------AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA 268 (367)
Q Consensus 196 ~ip-------~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 268 (367)
+++ ..+.+++..|.+++|+..|.+++|||++.++..+-+.+|+||+++.+..... .....+.|+++.|.+.+
T Consensus 175 VvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el-~~~dqL~Qy~v~cse~D 253 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL-PNPDQLTQYQVKCSEED 253 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC-CCcccceEEEEEeccch
Confidence 332 2334999999999999999999999999999999999999999999877665 24568999999999999
Q ss_pred HHHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc------
Q psy7790 269 KIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV------ 340 (367)
Q Consensus 269 k~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~------ 340 (367)
|+..++.++.- ..++.|||+||.+.|-++.-.|...|++.+.++|.|+...|..++++|..|-++++||||.
T Consensus 254 KflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~ 333 (569)
T KOG0346|consen 254 KFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDK 333 (569)
T ss_pred hHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhh
Confidence 98888777754 4789999999999999999999999999999999999999999999999999999999991
Q ss_pred -----------------------------ccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 341 -----------------------------ASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 341 -----------------------------~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
.+|||||.+|..|||||||.++..|
T Consensus 334 ~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sY 387 (569)
T KOG0346|consen 334 LEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSY 387 (569)
T ss_pred hhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHH
Confidence 4699999999999999999999988
No 29
>KOG0334|consensus
Probab=100.00 E-value=3.5e-39 Score=320.96 Aligned_cols=295 Identities=23% Similarity=0.372 Sum_probs=252.7
Q ss_pred cccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc----------
Q psy7790 65 GRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---------- 131 (367)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---------- 131 (367)
.+-.+++..+++..++..+...+ ..|++| |.++||+|+.|+|+|++|.|||||| |.+|++.+.
T Consensus 362 kpv~sW~q~gl~~~il~tlkkl~y~k~~~I----Q~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd 437 (997)
T KOG0334|consen 362 KPVTSWTQCGLSSKILETLKKLGYEKPTPI----QAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD 437 (997)
T ss_pred cccchHhhCCchHHHHHHHHHhcCCCCcch----hhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC
Confidence 35568899999999999886666 889999 9999999999999999999999999 888988663
Q ss_pred cCCccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcC--CCCCChhh
Q psy7790 132 RAPRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKG--IKKPTPIQ 193 (367)
Q Consensus 132 ~~~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g--~~~pt~iQ 193 (367)
.|...|.+++++++.++.+. +...+||.++..++..++. +.||+++++.+-... +.+...++
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 23345789999988888763 2335688888888776665 679999999876432 11111111
Q ss_pred h-------hcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec-
Q psy7790 194 V-------QGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK- 265 (367)
Q Consensus 194 ~-------~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~- 265 (367)
. .++...|.+++..|+++++..+|+++||||+|..+..++...+..|+.|.++.... .+..+.|.+..|.
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~sv--V~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSV--VCKEVTQVVRVCAI 595 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEcccee--EeccceEEEEEecC
Confidence 1 22255566888889999999999999999999999999999999999999987766 7889999999998
Q ss_pred hhhHHHHHHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q psy7790 266 QEAKIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASK 343 (367)
Q Consensus 266 ~~~k~~~l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~r 343 (367)
...|+..|+++|... ..++||||.+...|+.+...|...|+.|..+||+.+|.+|..+++.|++|.+.+||||++++|
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 889999999999764 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCEEEEcCCCCCcccc
Q psy7790 344 GLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 344 GlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|||++++.+|||||+|...++|
T Consensus 676 GLdv~~l~Lvvnyd~pnh~edy 697 (997)
T KOG0334|consen 676 GLDVKELILVVNYDFPNHYEDY 697 (997)
T ss_pred ccccccceEEEEcccchhHHHH
Confidence 9999999999999999988876
No 30
>KOG0332|consensus
Probab=100.00 E-value=1.6e-38 Score=283.60 Aligned_cols=290 Identities=18% Similarity=0.215 Sum_probs=237.9
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc--ccccccccccCCcc--ccCccccccc-----CCc
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET--KALMGVAELAKGIQ--YNDPIKTSWR-----APR 135 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g--~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~ 135 (367)
+-++|.+|.+.+++++.+.+.+ ..|+.| |+.++|.++.. +++|++++.|+||| |.+.++.... |..
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskI----Qe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~ 163 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKI----QETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC 163 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchH----HHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc
Confidence 4468999999999999997776 999999 99999999865 99999999999999 7777776642 333
Q ss_pred cccCCCHHHHHHHHh-------cc----CeEEecCCC--CccccccccCCCCHHHHHHHHHcCCCCCChhhhhccccc--
Q psy7790 136 CILSLPDQVHDIIRR-------NL----RILVEGDDV--PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA-- 200 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~-------~~----~i~~~g~~~--~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-- 200 (367)
.-.+++++.+.+.-. .. ...+-|... ...+..---+|+|+.+++.+.+.....++.||...+...
T Consensus 164 iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~ 243 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV 243 (477)
T ss_pred eeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhh
Confidence 334666666655443 12 112223211 112222122799999999999877777788887766543
Q ss_pred ------chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech-hhHHHHH
Q psy7790 201 ------LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ-EAKIVYL 273 (367)
Q Consensus 201 ------l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l 273 (367)
|.++--.|...++.+.|.++||||+...+.+++...+.++..+.+.+... ...+|.|.++.|.. .+|+..|
T Consensus 244 Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel--~L~~IkQlyv~C~~~~~K~~~l 321 (477)
T KOG0332|consen 244 MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL--ALDNIKQLYVLCACRDDKYQAL 321 (477)
T ss_pred hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc--cccchhhheeeccchhhHHHHH
Confidence 33677788889999999999999999999999999999999988888877 78899999999965 5788888
Q ss_pred HHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCE
Q psy7790 274 LECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKH 352 (367)
Q Consensus 274 ~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 352 (367)
..+.... =++.||||.|++.+.+|+..|...|+.+..+||+|...+|..++.+||.|+.+|||+|++++||||++.|..
T Consensus 322 ~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 322 VNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSV 401 (477)
T ss_pred HHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEE
Confidence 8865543 368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC
Q psy7790 353 VINTEAKIK 361 (367)
Q Consensus 353 VI~yd~P~~ 361 (367)
|||||+|-.
T Consensus 402 VvNydlP~~ 410 (477)
T KOG0332|consen 402 VVNYDLPVK 410 (477)
T ss_pred EEecCCccc
Confidence 999999964
No 31
>KOG4284|consensus
Probab=100.00 E-value=5.6e-37 Score=289.78 Aligned_cols=295 Identities=16% Similarity=0.236 Sum_probs=251.2
Q ss_pred ccccCCcccHhhhHHHHHHHHhc-ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCc
Q psy7790 64 WGRMSNISLLDQHSELKKMAEAK-KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APR 135 (367)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~ 135 (367)
.+.-..|+.|-+..+++..+... +..||++ |.++||.++.|-|+|++|..|+||| |..-.+..+. +..
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptki----QaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~ 96 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKI----QAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQK 96 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCch----hhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCccee
Confidence 34456799999999999988544 4999999 9999999999999999999999999 6555555543 344
Q ss_pred cccCCCHHHHHHHHh------------ccCeEEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccc
Q psy7790 136 CILSLPDQVHDIIRR------------NLRILVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPA 199 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~------------~~~i~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~ 199 (367)
.|..++++.+-++.. ++++.+||++.......+.. +|+||||+..++ .++..|+.+..-+++.
T Consensus 97 ~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~e-l~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 97 VIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVE-LGAMNMSHVRLFVLDE 175 (980)
T ss_pred EEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHH-hcCCCccceeEEEecc
Confidence 567777777666654 25778999998777666665 799999998865 6777778777666654
Q ss_pred c--------chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechh----
Q psy7790 200 A--------LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQE---- 267 (367)
Q Consensus 200 ~--------l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~---- 267 (367)
+ |.++|..|++.+|..+|+++||||.|..+.+++.++|++|..|....... ....|+|++..+...
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~--~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV--QLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc--eeechhheeeeccCCcchH
Confidence 3 44999999999999999999999999999999999999999999887766 677899988876542
Q ss_pred ----hHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q psy7790 268 ----AKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS 342 (367)
Q Consensus 268 ----~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~ 342 (367)
.|+..|-+++...+ .++||||+....|+-++.+|...|+.|.++.|.|+|.+|..+++.+|.-.++|||+||+.+
T Consensus 254 eemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLta 333 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhh
Confidence 46677777777665 3799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCEEEEcCCCCCcccc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
||||-++|++|||.|+|.+.++|
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY 356 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETY 356 (980)
T ss_pred ccCCccccceEEecCCCcchHHH
Confidence 99999999999999999999988
No 32
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.9e-35 Score=283.67 Aligned_cols=292 Identities=18% Similarity=0.265 Sum_probs=227.3
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-----Ccccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-----PRCIL 138 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-----~~~i~ 138 (367)
..+|+.|++++.+.+++...+ ..|+++ |.++|+.+++|+|++++|||||||| |.+|+...+.. ...+.
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~----Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil 102 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAI----QQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALIL 102 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 467999999999999987666 788999 9999999999999999999999999 67777665431 23456
Q ss_pred CCCHHHHHHHHhc-------c----CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhccccc--
Q psy7790 139 SLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIPAA-- 200 (367)
Q Consensus 139 ~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-- 200 (367)
.++.+.+.++.+. . ...+||.........+.. +++|+++.+.+.... .....+..-+++.+
T Consensus 103 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 103 APTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDEADE 181 (401)
T ss_pred CCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEecHHH
Confidence 6666666555432 1 123344433222222221 689999999887543 22333333333332
Q ss_pred -----chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech-hhHHHHHH
Q psy7790 201 -----LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ-EAKIVYLL 274 (367)
Q Consensus 201 -----l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 274 (367)
+...+..+++.++.+.|++++|||+|..+..+...++.++..+.+..... ...++.+.+..++. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL--TLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc--ccCCceEEEEecChHHHHHHHHH
Confidence 22566778888888999999999999999999999999988876655443 45567777777764 44666666
Q ss_pred HHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 275 ECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 275 ~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
.++... ..++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||++++||+|+|+|++|
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 666543 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccc
Q psy7790 354 INTEAKIKKREH 365 (367)
Q Consensus 354 I~yd~P~~~~~Y 365 (367)
||||+|.++..|
T Consensus 340 I~~~~p~s~~~y 351 (401)
T PTZ00424 340 INYDLPASPENY 351 (401)
T ss_pred EEECCCCCHHHE
Confidence 999999998887
No 33
>KOG0337|consensus
Probab=100.00 E-value=2.5e-37 Score=279.75 Aligned_cols=291 Identities=22% Similarity=0.306 Sum_probs=246.7
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC------Ccccc
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA------PRCIL 138 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~------~~~i~ 138 (367)
.+|..+++...+++++...+ +.|||+ |++.||.+++|+|+++.|-|||||| |.+|+...+.. ...+.
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpi----qRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralil 96 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPI----QRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALIL 96 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCch----hcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeec
Confidence 46999999999999996666 999999 9999999999999999999999999 99998876432 22345
Q ss_pred CCCHHHHHHHHh-----------ccCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhcc-----
Q psy7790 139 SLPDQVHDIIRR-----------NLRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGI----- 197 (367)
Q Consensus 139 ~~~~~~~~~~~~-----------~~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~i----- 197 (367)
.++++++.+..+ +..+++||..+..+...+.. +++|++++....++.+ ....++.-++
T Consensus 97 sptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l-~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTL-TLSSVEYVVFDEADR 175 (529)
T ss_pred cCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheec-cccceeeeeehhhhH
Confidence 555555444332 24557888888777766642 5799999988777662 2233333332
Q ss_pred --cccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHH
Q psy7790 198 --PAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275 (367)
Q Consensus 198 --p~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 275 (367)
...|.+++..++.+++..+||++||||+|..+-.+++..+.+|+.|.++-... ....+...+..+.+..|..+|+.
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetk--ise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETK--ISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhh--cchhhhhheeeeccHHHHHHHHH
Confidence 23356999999999999999999999999999999999999999999877776 67788889999999999999999
Q ss_pred HHhhcCC--CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 276 CLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 276 ~l~~~~~--~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
++....+ +++|||.|+..|+.+...|+..|+.+..++|.|++.-|...+.+|+.++..+||.||+++||+|||..+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 9998765 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccc
Q psy7790 354 INTEAKIKKREH 365 (367)
Q Consensus 354 I~yd~P~~~~~Y 365 (367)
||||+|.+..-|
T Consensus 334 inyd~p~~~klF 345 (529)
T KOG0337|consen 334 INYDFPPDDKLF 345 (529)
T ss_pred ccccCCCCCceE
Confidence 999999876654
No 34
>KOG0344|consensus
Probab=100.00 E-value=7.7e-34 Score=267.52 Aligned_cols=291 Identities=22% Similarity=0.308 Sum_probs=227.9
Q ss_pred CCccc----HhhhHHHHHHHHhc-ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCC------
Q psy7790 68 SNISL----LDQHSELKKMAEAK-KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAP------ 134 (367)
Q Consensus 68 ~~~~~----l~~~~~~~~~~~~~-~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~------ 134 (367)
.+|++ ...+..+++.+... +..|+++ |.++||.++.++|+++||||||||| |..|++.++...
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~i----q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENLQELGFDEPTPI----QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred ccccccchhhhhcHHHHHhHhhCCCCCCCcc----cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 35666 44456666665434 4889999 8999999999999999999999999 899988875332
Q ss_pred ----ccccCCCHHHHHHHHhccCeEE--ecCCC----------Ccccccccc-------CCCCHHHHHHHHHcC------
Q psy7790 135 ----RCILSLPDQVHDIIRRNLRILV--EGDDV----------PPACCSFRL-------MKLPESLVRALEAKG------ 185 (367)
Q Consensus 135 ----~~i~~~~~~~~~~~~~~~~i~~--~g~~~----------~~~~~~f~~-------l~~p~~ll~~l~~~g------ 185 (367)
..|..++++++.++...+.-.. .|+.. +.+-..|.. ++||.+|...+....
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 3467888888888876533222 22221 111111211 679999888775321
Q ss_pred ---CCCCChhhhhcccc-cchHHHHHHHhhcc-CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEE
Q psy7790 186 ---IKKPTPIQVQGIPA-ALSEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE 260 (367)
Q Consensus 186 ---~~~pt~iQ~~~ip~-~l~~~v~~Il~~l~-~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~ 260 (367)
+...+ -+-.++.. .|.+++..|++.+. ++..+-+||||++..+..+++..+.++..|.++..+. ....|.|.
T Consensus 288 ~V~~lV~d-EaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~s--a~~~V~Qe 364 (593)
T KOG0344|consen 288 KVEWLVVD-EADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNS--ANETVDQE 364 (593)
T ss_pred eeeeEeec-hHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchh--Hhhhhhhh
Confidence 11111 12222222 44467777776664 5567779999999999999999999999999998877 77889999
Q ss_pred EEEec-hhhHHHHHHHHHhh-cCCCeEEeeccHHHHHHHHHHH-HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEe
Q psy7790 261 VEYVK-QEAKIVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYL-LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337 (367)
Q Consensus 261 ~~~~~-~~~k~~~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa 337 (367)
.++|. +..|+..+.+++.. ..+++|||+.+.+.|..|+..| ...++++.++||..++.+|..++++||.|+++||||
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 99986 45789999888876 5788999999999999999999 788999999999999999999999999999999999
Q ss_pred cccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 338 TDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 338 Td~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
||+++|||||.+|+.|||||+|.+...|
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~sy 472 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSY 472 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHH
Confidence 9999999999999999999999998776
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.2e-33 Score=286.16 Aligned_cols=279 Identities=14% Similarity=0.146 Sum_probs=188.3
Q ss_pred hhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc----CCccccCCCHHHH--
Q psy7790 75 QHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR----APRCILSLPDQVH-- 145 (367)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~----~~~~i~~~~~~~~-- 145 (367)
+++++.+++...+ +.++++ |.++|+.+++|+|++++|||||||| |.+|++..+. +...+..++++++
T Consensus 21 l~~~l~~~L~~~g~~~p~~~----Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQH----QARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAAD 96 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHH----HHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHH
Confidence 5788888887766 788998 9999999999999999999999999 8899887642 1233445555444
Q ss_pred --HHHHhc--cCeE---EecCCCCcccccccc-----CCCCHHHHHHHH-----------HcCCCCCChhhhhcccccch
Q psy7790 146 --DIIRRN--LRIL---VEGDDVPPACCSFRL-----MKLPESLVRALE-----------AKGIKKPTPIQVQGIPAALS 202 (367)
Q Consensus 146 --~~~~~~--~~i~---~~g~~~~~~~~~f~~-----l~~p~~ll~~l~-----------~~g~~~pt~iQ~~~ip~~l~ 202 (367)
..++.- ..+. ++|.....+...+.. +++|+.+...+. ...+....+.... .-.+.
T Consensus 97 ~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~--~g~fg 174 (742)
T TIGR03817 97 QLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY--RGVFG 174 (742)
T ss_pred HHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc--cCccH
Confidence 433331 1111 233222111111111 567877654322 1111111111111 00122
Q ss_pred HH-------HHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech---------
Q psy7790 203 ED-------VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ--------- 266 (367)
Q Consensus 203 ~~-------v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--------- 266 (367)
.+ ++.+....+.++|+++||||++.... ++..++.++..+ +...+. +... .+.+.+...
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~--~~~~-~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGS--PRGA-RTVALWEPPLTELTGENG 249 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCC--CcCc-eEEEEecCCccccccccc
Confidence 33 33444445678999999999998754 677788877654 333322 2222 222222111
Q ss_pred --------hhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--------CCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 267 --------EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--------GVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 267 --------~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
..+...+..++. .+.++||||+|++.|+.++..|+.. +..+..|||++++++|.+++++|++|
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G 328 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG 328 (742)
T ss_pred cccccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC
Confidence 134444445544 4679999999999999999998653 57899999999999999999999999
Q ss_pred CCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 331 QKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 331 ~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
++++|||||+++|||||++|++|||||+|.++.+|
T Consensus 329 ~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y 363 (742)
T TIGR03817 329 ELLGVATTNALELGVDISGLDAVVIAGFPGTRASL 363 (742)
T ss_pred CceEEEECchHhccCCcccccEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999887
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.98 E-value=2.2e-31 Score=271.70 Aligned_cols=280 Identities=14% Similarity=0.114 Sum_probs=185.1
Q ss_pred cHhhhHHHHHHHHhc-c-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCCHH----
Q psy7790 72 LLDQHSELKKMAEAK-K-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQ---- 143 (367)
Q Consensus 72 ~l~~~~~~~~~~~~~-~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~---- 143 (367)
.+.....+...+... + ....+. |+++|++++.|+|+++++|||+||| |.+|++..- ....+.++..+
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~----Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-GiTLVISPLiSLmqD 515 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPN----QREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-GITLVISPLVSLIQD 515 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHH----HHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC-CcEEEEeCHHHHHHH
Confidence 345555555554332 2 566777 9999999999999999999999999 888886542 22333344433
Q ss_pred HHHHHHhc-c--CeEEecCCCCcccccccc-----------CCCCHHHHH------HHHHcCCCCCChhhhhccccc---
Q psy7790 144 VHDIIRRN-L--RILVEGDDVPPACCSFRL-----------MKLPESLVR------ALEAKGIKKPTPIQVQGIPAA--- 200 (367)
Q Consensus 144 ~~~~~~~~-~--~i~~~g~~~~~~~~~f~~-----------l~~p~~ll~------~l~~~g~~~pt~iQ~~~ip~~--- 200 (367)
++..+... . ..+.+|.....+...+.. +.+|+++.. .+..... -..+..-+|+.+
T Consensus 516 QV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~--~~~LslIVIDEAHcV 593 (1195)
T PLN03137 516 QIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS--RGLLARFVIDEAHCV 593 (1195)
T ss_pred HHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh--ccccceeccCcchhh
Confidence 33333321 1 122344333222221111 467888652 2221100 000111122221
Q ss_pred ------chHHHHHH--HhhccCCceEEeecCCCcHHHHHHHHHhcC--CCEEEEeCCCCccCCCCcceEEEEEechhh-H
Q psy7790 201 ------LSEDVRTI--FSFFRGQRQTLLFSATMPKKIQNFARSALV--KPITINVGRAGKIMPSMNVVQEVEYVKQEA-K 269 (367)
Q Consensus 201 ------l~~~v~~I--l~~l~~~~Q~il~SAT~~~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k 269 (367)
|.++.+.+ +...-.+.|+++||||++..+...+...+. ++..+... . ..+++.. ..+.... .
T Consensus 594 SqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-f----~RpNL~y--~Vv~k~kk~ 666 (1195)
T PLN03137 594 SQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-F----NRPNLWY--SVVPKTKKC 666 (1195)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-c----CccceEE--EEeccchhH
Confidence 33444432 333334688999999999999887766554 34433322 2 1234433 2333322 2
Q ss_pred HHHHHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCc
Q psy7790 270 IVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDF 347 (367)
Q Consensus 270 ~~~l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi 347 (367)
...+..++... +..+||||+|++.|+.++..|...|+.+..|||+|++.+|..++++|+.|+++|||||++++||||+
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk 746 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK 746 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc
Confidence 45666776543 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCcccc
Q psy7790 348 EEIKHVINTEAKIKKREH 365 (367)
Q Consensus 348 ~~v~~VI~yd~P~~~~~Y 365 (367)
|+|++|||||+|.+++.|
T Consensus 747 PDVR~VIHydlPkSiEsY 764 (1195)
T PLN03137 747 PDVRFVIHHSLPKSIEGY 764 (1195)
T ss_pred cCCcEEEEcCCCCCHHHH
Confidence 999999999999999988
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=3.7e-31 Score=259.12 Aligned_cols=263 Identities=16% Similarity=0.189 Sum_probs=174.6
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCC----HHHHHHHHhccCe---EEec
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLP----DQVHDIIRRNLRI---LVEG 158 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~----~~~~~~~~~~~~i---~~~g 158 (367)
..+++. |.++|+++++|+|+++++|||+||| |.+|++.. .....+..++ .+++..++. .++ .++|
T Consensus 10 ~~~r~~----Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~ 83 (470)
T TIGR00614 10 SSFRPV----QLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-DGITLVISPLISLMEDQVLQLKA-SGIPATFLNS 83 (470)
T ss_pred CCCCHH----HHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-CCcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 667777 9999999999999999999999999 77886642 2223333333 344445543 222 2223
Q ss_pred CCCCccc----cccc----c--CCCCHHHHHHH---HHcCCCCCChhhhhccccc---------chHHHH---HHHhhcc
Q psy7790 159 DDVPPAC----CSFR----L--MKLPESLVRAL---EAKGIKKPTPIQVQGIPAA---------LSEDVR---TIFSFFR 213 (367)
Q Consensus 159 ~~~~~~~----~~f~----~--l~~p~~ll~~l---~~~g~~~pt~iQ~~~ip~~---------l~~~v~---~Il~~l~ 213 (367)
....... ..+. . +.+|+++.... ... .....+..-+|+.+ +.++.. .+...+
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l--~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~- 160 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTL--EERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF- 160 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHH--HhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc-
Confidence 2211100 0000 0 34666643221 110 00111122222221 223332 233334
Q ss_pred CCceEEeecCCCcHHHHHHHHHhc--CCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh-cCC-CeEEeec
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSAL--VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK-TEP-PVLIFAE 289 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~-~~iVF~~ 289 (367)
++.+++++|||+++.+...+...+ .++..+..... ..++...+.. .....+..+..++.. ..+ .+||||+
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-----r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD-----RPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-----CCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEEC
Confidence 467899999999999877666654 45555443322 2233322222 222456667777763 333 4699999
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|++.|+.++..|...|+.+..|||+|++.+|..+++.|++|+++|||||++++||||+|+|++||||++|.+++.|
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y 310 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESY 310 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887
No 38
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=1.3e-30 Score=274.58 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=185.4
Q ss_pred ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc-ccCcccccc---cCCccccCCCHHHHHHHHhc-------c---
Q psy7790 87 KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ-YNDPIKTSW---RAPRCILSLPDQVHDIIRRN-------L--- 152 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT-~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~-------~--- 152 (367)
+..|+++ |+.+++.++.|+|++++||||+||| |..|+...+ .+...+..++++++.++... .
T Consensus 78 G~~pt~i----Q~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 78 GSKPWSL----QRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred CCCCcHH----HHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 4678888 9999999999999999999999999 544443222 23345667777666665543 1
Q ss_pred -CeEEecCCCC-cc----cccccc------CCCCHHHHHHHHHcCCCCCChhhhhccc------------------ccch
Q psy7790 153 -RILVEGDDVP-PA----CCSFRL------MKLPESLVRALEAKGIKKPTPIQVQGIP------------------AALS 202 (367)
Q Consensus 153 -~i~~~g~~~~-~~----~~~f~~------l~~p~~ll~~l~~~g~~~pt~iQ~~~ip------------------~~l~ 202 (367)
.+.++|.+++ .+ ...+.. ++||++|.+++..... ..+..-+++ ..|.
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~---~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPK---KKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccc---cccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 2234454432 11 111221 7899999998763211 112222221 1222
Q ss_pred -HHHHHHHhhccC------------------------CceEEeecCCCcHH-HHHHHHHhcCCCEEEEeCCCCccCCCCc
Q psy7790 203 -EDVRTIFSFFRG------------------------QRQTLLFSATMPKK-IQNFARSALVKPITINVGRAGKIMPSMN 256 (367)
Q Consensus 203 -~~v~~Il~~l~~------------------------~~Q~il~SAT~~~~-v~~l~~~~l~~~~~i~~~~~~~~~~~~~ 256 (367)
+++..+++.++. .+|+++||||+++. +.. .+++++..+.++.... ...+
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~--~~rn 305 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF--YLRN 305 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc--ccCC
Confidence 567777777654 78999999999875 332 2345566677766654 5678
Q ss_pred ceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHH---HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCc
Q psy7790 257 VVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQD---VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333 (367)
Q Consensus 257 i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 333 (367)
+.|.++.++ .+...|.+++...+.++||||+|+.. |++++++|...|+++..+||+| .+.+++|++|+++
T Consensus 306 I~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~ 378 (1176)
T PRK09401 306 IVDSYIVDE--DSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD 378 (1176)
T ss_pred ceEEEEEcc--cHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC
Confidence 888888775 56677888887777889999999877 9999999999999999999999 2346999999999
Q ss_pred EEEe----cccccccCCcCC-CCEEEEcCCCC
Q psy7790 334 VMVA----TDVASKGLDFEE-IKHVINTEAKI 360 (367)
Q Consensus 334 vLVa----Td~~~rGlDi~~-v~~VI~yd~P~ 360 (367)
|||| ||+++||||+|+ |++|||||+|+
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 699999999999 89999999998
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=2.6e-30 Score=259.78 Aligned_cols=261 Identities=16% Similarity=0.195 Sum_probs=174.6
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCcccc----CCCHHHHHHHHhccCeEE---ec
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCIL----SLPDQVHDIIRRNLRILV---EG 158 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~----~~~~~~~~~~~~~~~i~~---~g 158 (367)
+.+++. |+++|+.+++|+|+++++|||+||| |.+|++..- ....+. ++..+++..++.. ++.+ .+
T Consensus 24 ~~~r~~----Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~-g~tlVisPl~sL~~dqv~~l~~~-gi~~~~~~s 97 (607)
T PRK11057 24 QQFRPG----QQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD-GLTLVVSPLISLMKDQVDQLLAN-GVAAACLNS 97 (607)
T ss_pred CCCCHH----HHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC-CCEEEEecHHHHHHHHHHHHHHc-CCcEEEEcC
Confidence 677888 9999999999999999999999999 788866432 112222 3334555555542 2211 11
Q ss_pred CCC-Cccccccc---------cCCCCHHHHHH--HHHcCCCCCChhhhhcccc---------cchHHHH---HHHhhccC
Q psy7790 159 DDV-PPACCSFR---------LMKLPESLVRA--LEAKGIKKPTPIQVQGIPA---------ALSEDVR---TIFSFFRG 214 (367)
Q Consensus 159 ~~~-~~~~~~f~---------~l~~p~~ll~~--l~~~g~~~pt~iQ~~~ip~---------~l~~~v~---~Il~~l~~ 214 (367)
... ......+. -+.+|+++... +..... ..+..-+++. -|.++++ .+...+ +
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~---~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p 173 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAH---WNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-P 173 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhh---CCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-C
Confidence 111 11111110 03566666521 111100 0111112211 1223332 333333 4
Q ss_pred CceEEeecCCCcHHHHHHHHHh--cCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhc-CCCeEEeeccH
Q psy7790 215 QRQTLLFSATMPKKIQNFARSA--LVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKK 291 (367)
Q Consensus 215 ~~Q~il~SAT~~~~v~~l~~~~--l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~iVF~~s~ 291 (367)
+.+++++|||++..+...+... +.+|..... ... ..++. +..+....+...+..++... +.++||||+|+
T Consensus 174 ~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~-~~~----r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr 246 (607)
T PRK11057 174 TLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFD----RPNIR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSR 246 (607)
T ss_pred CCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC-CCC----CCcce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcH
Confidence 6889999999999877655554 345554332 221 22332 23334445566677777654 45799999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 292 QDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 292 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+.|+.++..|...|+.+..+||+|++.+|..+++.|+.|+.+|||||++++||||+|+|++|||||+|.+++.|
T Consensus 247 ~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y 320 (607)
T PRK11057 247 AKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY 320 (607)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887
No 40
>KOG0350|consensus
Probab=99.97 E-value=2.5e-30 Score=238.95 Aligned_cols=270 Identities=16% Similarity=0.231 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhH---------hcccccccccccCCcc--ccCccccccc--CCc----cccCCCHHHHHHHHhc------
Q psy7790 95 LKEEEKILRSVA---------ETKALMGVAELAKGIQ--YNDPIKTSWR--APR----CILSLPDQVHDIIRRN------ 151 (367)
Q Consensus 95 ~~~Q~~~i~~i~---------~g~d~~~~a~TgsGKT--~~~p~~~~~~--~~~----~i~~~~~~~~~~~~~~------ 151 (367)
...|..++|.++ .++|+++-|+|||||| |.+||++.+. |.+ .|..++++++.++...
T Consensus 161 FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~ 240 (620)
T KOG0350|consen 161 FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNS 240 (620)
T ss_pred cchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhcc
Confidence 344888998885 3789999999999999 9999998763 222 2445555555555443
Q ss_pred -cCeEE----ecCCCCccccccc---c-------CCCCHHHHHHHHH-cCCCCCChhhhhcccccch-------------
Q psy7790 152 -LRILV----EGDDVPPACCSFR---L-------MKLPESLVRALEA-KGIKKPTPIQVQGIPAALS------------- 202 (367)
Q Consensus 152 -~~i~~----~g~~~~~~~~~f~---~-------l~~p~~ll~~l~~-~g~~~pt~iQ~~~ip~~l~------------- 202 (367)
.++.| |..++......+. . +.|||||+++|.. .+|.. ..+...+|+.+-.
T Consensus 241 ~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~L-k~LrfLVIDEADRll~qsfQ~Wl~~v 319 (620)
T KOG0350|consen 241 GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDL-KHLRFLVIDEADRLLDQSFQEWLDTV 319 (620)
T ss_pred CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcch-hhceEEEechHHHHHHHHHHHHHHHH
Confidence 23332 2222211111111 1 6799999999984 34431 2222222222111
Q ss_pred ----------------------------HHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCC--CCccC
Q psy7790 203 ----------------------------EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGR--AGKIM 252 (367)
Q Consensus 203 ----------------------------~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~--~~~~~ 252 (367)
.++...+..+...-+.++||||++..-..+..--++.|..+.+.. .+...
T Consensus 320 ~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~rys 399 (620)
T KOG0350|consen 320 MSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYS 399 (620)
T ss_pred HHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeee
Confidence 222222222233346889999999888888888888886554442 22223
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHH----hCCCeEEEEecCCCHHHHHHHHHHH
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLL----LKGVEAVAIHGGKDQEERTRSVESF 327 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F 327 (367)
.+..+.+..+.++...|..++..++.... .++|+|+++...+.+++..|+ ..++++..|.|+++...|.+.+++|
T Consensus 400 lp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f 479 (620)
T KOG0350|consen 400 LPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKF 479 (620)
T ss_pred cChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHH
Confidence 56677888888888899999999998765 579999999999999999997 2367788899999999999999999
Q ss_pred hcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 328 RKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 328 ~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
..|.+.||||||+++||||+.+|+.|||||+|.+...|
T Consensus 480 ~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~kty 517 (620)
T KOG0350|consen 480 AKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTY 517 (620)
T ss_pred hcCCceEEEehhhhhcCCcccccceEeecCCCchhhHH
Confidence 99999999999999999999999999999999998877
No 41
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-29 Score=244.84 Aligned_cols=260 Identities=18% Similarity=0.212 Sum_probs=175.2
Q ss_pred HHHHHHHhHhcccccccccccCCcc--ccCccccc----ccCCccccCCCHHHHHHHHhc-cCeEEecCCCCc-------
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQ--YNDPIKTS----WRAPRCILSLPDQVHDIIRRN-LRILVEGDDVPP------- 163 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~----~~~~~~i~~~~~~~~~~~~~~-~~i~~~g~~~~~------- 163 (367)
|+++|..+++|+|++++.|||+||+ |++|.+-. +.-.++| ++..++.+.++.. ..+..-.+....
T Consensus 22 Q~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLi-SLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~ 100 (590)
T COG0514 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLI-SLMKDQVDQLEAAGIRAAYLNSTLSREERQQVL 100 (590)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchH-HHHHHHHHHHHHcCceeehhhcccCHHHHHHHH
Confidence 8999999999999999999999999 88886644 1223334 4445555555543 122211111110
Q ss_pred -cccc---------cccCCCCHHHHHHHHHcCCCCCChhhhhccccc---chHHH---HHHHhhccCCceEEeecCCCcH
Q psy7790 164 -ACCS---------FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA---LSEDV---RTIFSFFRGQRQTLLFSATMPK 227 (367)
Q Consensus 164 -~~~~---------f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~---l~~~v---~~Il~~l~~~~Q~il~SAT~~~ 227 (367)
++.. -+.+ ..++.++.|....+...-=-...|+..+ |.++. ..+...++ +..++++|||.++
T Consensus 101 ~~l~~g~~klLyisPErl-~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~ 178 (590)
T COG0514 101 NQLKSGQLKLLYISPERL-MSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATP 178 (590)
T ss_pred HHHhcCceeEEEECchhh-cChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCCh
Confidence 0000 0001 1224445554322211000012333333 44444 44455555 7899999999999
Q ss_pred HHHHHHHHhcC--CCEEEEeCCCCccCCCCcceEEEEEec-hhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC
Q psy7790 228 KIQNFARSALV--KPITINVGRAGKIMPSMNVVQEVEYVK-QEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK 304 (367)
Q Consensus 228 ~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~ 304 (367)
.+...+...|. ++..+... . ..+|+...+.... ...++.++...+.......||||.|++.|+.++++|...
T Consensus 179 ~v~~DI~~~L~l~~~~~~~~s-f----dRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~ 253 (590)
T COG0514 179 RVRDDIREQLGLQDANIFRGS-F----DRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN 253 (590)
T ss_pred HHHHHHHHHhcCCCcceEEec-C----CCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC
Confidence 99988887664 34333332 2 2335544443332 344455444423334456999999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 305 GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 305 ~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+++..|||||+.++|..+.++|..++.+|+|||.++++|||.|||++|||||+|.|+++|
T Consensus 254 g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsY 314 (590)
T COG0514 254 GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESY 314 (590)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.96 E-value=1.8e-29 Score=254.00 Aligned_cols=263 Identities=19% Similarity=0.244 Sum_probs=176.3
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccc----cCCCHHHHHHHHhccCeEE---ec
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCI----LSLPDQVHDIIRRNLRILV---EG 158 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i----~~~~~~~~~~~~~~~~i~~---~g 158 (367)
.+..+. |+++|+++++|+|+++++|||+||| |..|.+..... ..+ .++..+++..++. +++.+ .+
T Consensus 12 ~~fr~~----Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~-~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s 85 (591)
T TIGR01389 12 DDFRPG----QEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGL-TVVISPLISLMKDQVDQLRA-AGVAAAYLNS 85 (591)
T ss_pred CCCCHH----HHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCc-EEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 556777 9999999999999999999999999 77776644221 122 2334455556654 23322 11
Q ss_pred -CCCCccccccc-----c----CCCCHHHHHHHHHcCCCCCChhhhh------ccc---ccchHH---HHHHHhhccCCc
Q psy7790 159 -DDVPPACCSFR-----L----MKLPESLVRALEAKGIKKPTPIQVQ------GIP---AALSED---VRTIFSFFRGQR 216 (367)
Q Consensus 159 -~~~~~~~~~f~-----~----l~~p~~ll~~l~~~g~~~pt~iQ~~------~ip---~~l~~~---v~~Il~~l~~~~ 216 (367)
.+.......+. . +.+|.++....-.. ......+-.- +++ .-|.++ +..+...++. .
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~-~ 163 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQ-V 163 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCC-C
Confidence 11111000000 0 24666654321100 0000011111 111 112233 3334444544 4
Q ss_pred eEEeecCCCcHHHHHHHHHhcC--CCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhc-CCCeEEeeccHHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALV--KPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQD 293 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~iVF~~s~~~ 293 (367)
+++++|||++..+...+...+. ++..+... . ...++. +.......+...+..++... +.++||||+|++.
T Consensus 164 ~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~----~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~ 236 (591)
T TIGR01389 164 PRIALTATADAETRQDIRELLRLADANEFITS-F----DRPNLR--FSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKK 236 (591)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-C----CCCCcE--EEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHH
Confidence 4999999999998887777664 34433221 1 123332 33334456677788888765 4679999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 294 VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 294 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+.++..|...|+++..|||+|+..+|..+++.|++|+++|||||+++++|||+|+|++||||++|.|++.|
T Consensus 237 ~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y 308 (591)
T TIGR01389 237 VEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESY 308 (591)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.8e-28 Score=246.71 Aligned_cols=260 Identities=12% Similarity=0.064 Sum_probs=180.3
Q ss_pred ccChHHHhHHHHHHHHHHhHhcc-cccccccccCCccc-----cCcccccc-cCCccc-cCCCHHHHHH-------HHhc
Q psy7790 87 KESAKEKQLKEEEKILRSVAETK-ALMGVAELAKGIQY-----NDPIKTSW-RAPRCI-LSLPDQVHDI-------IRRN 151 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~g~-d~~~~a~TgsGKT~-----~~p~~~~~-~~~~~i-~~~~~~~~~~-------~~~~ 151 (367)
+-.|+++ |+++|+.++.|+ ++++++|||||||. .+++...- .|.+.+ ...+++++.+ +.+.
T Consensus 13 G~~Ptpi----Q~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~ 88 (844)
T TIGR02621 13 GYSPFPW----QLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGER 88 (844)
T ss_pred CCCCCHH----HHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHH
Confidence 4449999 999999999998 57778999999992 33432211 122333 2234433332 2222
Q ss_pred c---------------------------CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCC----C---CChh
Q psy7790 152 L---------------------------RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIK----K---PTPI 192 (367)
Q Consensus 152 ~---------------------------~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~----~---pt~i 192 (367)
+ ..++||.++..+...... ++|+ +++.+..+. . .-|+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 89 LPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred hcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccc
Confidence 1 334688888777766643 5773 444433221 1 1122
Q ss_pred h--------hhc-----ccccchHHHHHHHhhc--cC---CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCC
Q psy7790 193 Q--------VQG-----IPAALSEDVRTIFSFF--RG---QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPS 254 (367)
Q Consensus 193 Q--------~~~-----ip~~l~~~v~~Il~~l--~~---~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~ 254 (367)
+ .-+ +...|.+++..|++.+ +. .+|+++||||+|.++..++..++.++..+.+..... ..
T Consensus 165 ~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l--~a 242 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL--AA 242 (844)
T ss_pred hhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc--cc
Confidence 2 111 2334558999999975 33 269999999999999988888888887777654443 44
Q ss_pred CcceEEEEEechhhHHHHHHH----HHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH-----HHHH
Q psy7790 255 MNVVQEVEYVKQEAKIVYLLE----CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT-----RSVE 325 (367)
Q Consensus 255 ~~i~~~~~~~~~~~k~~~l~~----~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~-----~~~~ 325 (367)
.++.+. +.++...|+..++. .+...++++||||||++.|+.+++.|...++ ..+||+|++.+|. .+++
T Consensus 243 ~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 243 KKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFN 319 (844)
T ss_pred cceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHH
Confidence 555653 44444445444333 3344557899999999999999999998887 8999999999999 8899
Q ss_pred HHhc----CC-------CcEEEecccccccCCcCCCCEEEEcCCCC
Q psy7790 326 SFRK----GQ-------KDVMVATDVASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 326 ~F~~----g~-------~~vLVaTd~~~rGlDi~~v~~VI~yd~P~ 360 (367)
+|++ |. ..|||||++++|||||+. ++||++.+|.
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP~ 364 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF 364 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCCH
Confidence 9997 54 689999999999999986 8999998884
No 44
>KOG0329|consensus
Probab=99.96 E-value=2.5e-29 Score=214.49 Aligned_cols=257 Identities=19% Similarity=0.235 Sum_probs=205.2
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCc-----cccC
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPR-----CILS 139 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~-----~i~~ 139 (367)
+.|.++-+.+++++++-+.+ ++|++. |.++||...-|-|++++|..|.||| |.+.-++.+.|.+ .+.+
T Consensus 42 sgfrdfllkpellraivdcgfehpsev----qhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmc 117 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEV----QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMC 117 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHh----hhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEe
Confidence 57999999999999986666 999999 9999999999999999999999999 7777777776632 3567
Q ss_pred CCHHHHHHHHhc------------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhcccc---
Q psy7790 140 LPDQVHDIIRRN------------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIPA--- 199 (367)
Q Consensus 140 ~~~~~~~~~~~~------------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~--- 199 (367)
.+++.+-++.+. ..+..||..+......+.+ +|+|||++...++..+.. ..+..-+++.
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~l-k~vkhFvlDEcdk 196 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNL-KNVKHFVLDECDK 196 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCch-hhcceeehhhHHH
Confidence 777777777653 3456799988777766665 799999999988765442 2222112221
Q ss_pred c-----chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHH
Q psy7790 200 A-----LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274 (367)
Q Consensus 200 ~-----l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 274 (367)
+ +..++..|++..|.+.|+++||||++++++..++.+|.+|..|.++.... ++...+.|+|+..++.+|-..|.
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~K-LtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAK-LTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhh-hhhhhHHHHHHhhhhhhhhhhhh
Confidence 1 11788999999999999999999999999999999999999998877654 35567888888888888877777
Q ss_pred HHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 275 ECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 275 ~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
.+|.... .+++||+.|... | . | +.+ ||||++++||+||..|+.|
T Consensus 276 dLLd~LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 276 DLLDVLEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhhhhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccceee
Confidence 7776544 579999987665 0 0 3 223 8999999999999999999
Q ss_pred EEcCCCCCcccc
Q psy7790 354 INTEAKIKKREH 365 (367)
Q Consensus 354 I~yd~P~~~~~Y 365 (367)
+|||||.+..+|
T Consensus 321 ~NYdmp~~~DtY 332 (387)
T KOG0329|consen 321 FNYDMPEDSDTY 332 (387)
T ss_pred eccCCCCCchHH
Confidence 999999999887
No 45
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=1.9e-28 Score=258.55 Aligned_cols=257 Identities=16% Similarity=0.168 Sum_probs=181.0
Q ss_pred cccChHHHhHHHHHHHHHHhHhcccccccccccCCcc-ccCcccccc---cCCccccCCCHHHHHHHHhc-------cC-
Q psy7790 86 KKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ-YNDPIKTSW---RAPRCILSLPDQVHDIIRRN-------LR- 153 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT-~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~-------~~- 153 (367)
.+..|+++ |+.+++.++.|+|++++||||+||| |..|+...+ .+...+..++++++.++... .+
T Consensus 75 ~g~~p~~i----Q~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i 150 (1171)
T TIGR01054 75 VGSEPWSI----QKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGV 150 (1171)
T ss_pred cCCCCcHH----HHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCC
Confidence 45678998 9999999999999999999999999 555554332 23345667777666655432 11
Q ss_pred -e-----EEecCCCCcc---cccccc------CCCCHHHHHHHHHcCCCCCChhhhhcccc------------------c
Q psy7790 154 -I-----LVEGDDVPPA---CCSFRL------MKLPESLVRALEAKGIKKPTPIQVQGIPA------------------A 200 (367)
Q Consensus 154 -i-----~~~g~~~~~~---~~~f~~------l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~------------------~ 200 (367)
+ ..||.+...+ ...+.. ++||++|.+.+..... .+..-+++. .
T Consensus 151 ~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~----~~~~iVvDEaD~~L~~~k~vd~il~llG 226 (1171)
T TIGR01054 151 GTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP----KFDFIFVDDVDALLKASKNVDKLLKLLG 226 (1171)
T ss_pred ceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC----CCCEEEEeChHhhhhccccHHHHHHHcC
Confidence 1 1244332221 112221 7899999998776431 111111111 1
Q ss_pred chH-HHHHHH----------------------hhccCCce--EEeecCC-CcHHHHHHHHHhcCCCEEEEeCCCCccCCC
Q psy7790 201 LSE-DVRTIF----------------------SFFRGQRQ--TLLFSAT-MPKKIQNFARSALVKPITINVGRAGKIMPS 254 (367)
Q Consensus 201 l~~-~v~~Il----------------------~~l~~~~Q--~il~SAT-~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~ 254 (367)
|.+ ++..|+ +.++..+| +++|||| +|..+.. .++++...+.++.... ..
T Consensus 227 F~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~--~~ 301 (1171)
T TIGR01054 227 FSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSD--TL 301 (1171)
T ss_pred CCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCccc--cc
Confidence 222 344433 33455555 5678999 5654432 3456666677776654 56
Q ss_pred CcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccH---HHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 255 MNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKK---QDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 255 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~---~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
.++.+.+..++. +...|.+++...+.++||||+|+ +.|++++..|...|+++..+||+|++ .++++|++|+
T Consensus 302 r~I~~~~~~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~ 375 (1171)
T TIGR01054 302 RNVVDVYVEDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGE 375 (1171)
T ss_pred cceEEEEEeccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCC
Confidence 788888776554 24556777777778899999999 99999999999999999999999973 6899999999
Q ss_pred CcEEEe----cccccccCCcCC-CCEEEEcCCCCC
Q psy7790 332 KDVMVA----TDVASKGLDFEE-IKHVINTEAKIK 361 (367)
Q Consensus 332 ~~vLVa----Td~~~rGlDi~~-v~~VI~yd~P~~ 361 (367)
++|||| ||+++||||+|+ |++|||||+|+.
T Consensus 376 ~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 376 IDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 999999 599999999999 899999999975
No 46
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=5e-28 Score=260.20 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=180.5
Q ss_pred cccChHHHhHHHHHHHHHHhHhcccccccccccCCcc-ccCcccccc---cCCccccCCCHHHHHHHHhc-------c--
Q psy7790 86 KKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ-YNDPIKTSW---RAPRCILSLPDQVHDIIRRN-------L-- 152 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT-~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~-------~-- 152 (367)
.+-+|+++ |+.+++.+++|+|++++||||+||| |..++.... .....+..++.+++.++... +
T Consensus 76 ~G~~pt~i----Q~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~ 151 (1638)
T PRK14701 76 TGFEFWSI----QKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANL 151 (1638)
T ss_pred hCCCCCHH----HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCC
Confidence 34468888 9999999999999999999999999 322222111 11234455555444443322 1
Q ss_pred Ce----EEecCCCCccc---ccccc------CCCCHHHHHHHHHcCCCCCChhhhhccc------------------ccc
Q psy7790 153 RI----LVEGDDVPPAC---CSFRL------MKLPESLVRALEAKGIKKPTPIQVQGIP------------------AAL 201 (367)
Q Consensus 153 ~i----~~~g~~~~~~~---~~f~~------l~~p~~ll~~l~~~g~~~pt~iQ~~~ip------------------~~l 201 (367)
.+ ..||.+...+. ..+.. ++||+++.+.+..... ..+..-+++ ..|
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~---~~i~~iVVDEAD~ml~~~knid~~L~llGF 228 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH---LKFDFIFVDDVDAFLKASKNIDRSLQLLGF 228 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh---CCCCEEEEECceeccccccccchhhhcCCC
Confidence 11 22443332221 11221 6899999887654210 111111111 122
Q ss_pred hHHHHH----HHh----------------------hccCCce-EEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCC
Q psy7790 202 SEDVRT----IFS----------------------FFRGQRQ-TLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPS 254 (367)
Q Consensus 202 ~~~v~~----Il~----------------------~l~~~~Q-~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~ 254 (367)
.+++.. |++ .++..+| +++||||+++.. ....+++++..+.++.... ..
T Consensus 229 ~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~~~~~--~l 304 (1638)
T PRK14701 229 YEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVGSGRS--AL 304 (1638)
T ss_pred hHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEecCCCC--CC
Confidence 244432 322 3455566 577999998641 1224457777788877655 66
Q ss_pred CcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHH---HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 255 MNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQD---VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 255 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
.++.|.++.++...+ ..|.+++...+.++||||+|++. |+++++.|...|+++..+||+ |..++++|++|+
T Consensus 305 r~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~ 378 (1638)
T PRK14701 305 RNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGE 378 (1638)
T ss_pred CCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCC
Confidence 788888887766655 56778887777789999999876 589999999999999999996 899999999999
Q ss_pred CcEEEec----ccccccCCcCC-CCEEEEcCCCC---Ccccc
Q psy7790 332 KDVMVAT----DVASKGLDFEE-IKHVINTEAKI---KKREH 365 (367)
Q Consensus 332 ~~vLVaT----d~~~rGlDi~~-v~~VI~yd~P~---~~~~Y 365 (367)
++||||| ++++||||+|+ |++|||||+|+ +++.|
T Consensus 379 ~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~ 420 (1638)
T PRK14701 379 IDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLE 420 (1638)
T ss_pred CCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhc
Confidence 9999999 59999999999 99999999999 77755
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=3.6e-28 Score=252.60 Aligned_cols=282 Identities=16% Similarity=0.120 Sum_probs=171.6
Q ss_pred hhHHHHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-----------CccccCCC
Q psy7790 75 QHSELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-----------PRCILSLP 141 (367)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-----------~~~i~~~~ 141 (367)
+++.+.+........++++ |+++++.+++|+|++++|||||||| |.+|+...+.. ...+..++
T Consensus 18 l~~~v~~~~~~~~~~~tpi----Q~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKEKFGTFTPP----QRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHHccCCCCHH----HHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCH
Confidence 4566666665555788998 9999999999999999999999999 66776654311 12233444
Q ss_pred HHHHHHHHh------------------cc-Ce----EEecCCCCccccccc---c--CCCCHHHHHHHHHcCCC-CCChh
Q psy7790 142 DQVHDIIRR------------------NL-RI----LVEGDDVPPACCSFR---L--MKLPESLVRALEAKGIK-KPTPI 192 (367)
Q Consensus 142 ~~~~~~~~~------------------~~-~i----~~~g~~~~~~~~~f~---~--l~~p~~ll~~l~~~g~~-~pt~i 192 (367)
..++.++.+ .+ .+ ..|+.........+. + +.||+++...+....+. ....+
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 444333221 01 11 223322211111111 1 57898887665432221 01111
Q ss_pred hhhccccc---c----hHH----HHHHHhhccCCceEEeecCCCcHHHHHHHHHhcC-------CCEEEEeCCCCccCCC
Q psy7790 193 QVQGIPAA---L----SED----VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV-------KPITINVGRAGKIMPS 254 (367)
Q Consensus 193 Q~~~ip~~---l----~~~----v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~-------~~~~i~~~~~~~~~~~ 254 (367)
..-+++.+ + ..+ +..+....+...|++++|||+++ ...++..... .+..+....... .
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k---~ 249 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVK---P 249 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCc---c
Confidence 11111111 1 012 22333333467899999999975 2333322111 122221111111 0
Q ss_pred CcceEE-----EEEechh----hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC------CCeEEEEecCCCHHH
Q psy7790 255 MNVVQE-----VEYVKQE----AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK------GVEAVAIHGGKDQEE 319 (367)
Q Consensus 255 ~~i~~~-----~~~~~~~----~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~ 319 (367)
..+... +...... .....|.+++. ...++||||||+..|+.++..|... +..+.++||+|++++
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~-~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIK-EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREV 328 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHH
Confidence 011000 0111111 12233444443 3568999999999999999999763 468999999999999
Q ss_pred HHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|..+++.|++|+++|||||+++++|||+|+|++||||+.|.++..|
T Consensus 329 R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~y 374 (876)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRL 374 (876)
T ss_pred HHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999998876
No 48
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=8.5e-27 Score=233.08 Aligned_cols=251 Identities=12% Similarity=0.091 Sum_probs=162.3
Q ss_pred HHHhHHHHHHHHHHhHhcccccccccccCCccccCc-----------ccccc---c-----CCccccCCCHHHHHHHHhc
Q psy7790 91 KEKQLKEEEKILRSVAETKALMGVAELAKGIQYNDP-----------IKTSW---R-----APRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 91 ~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-----------~~~~~---~-----~~~~i~~~~~~~~~~~~~~ 151 (367)
+..|.+.|+++++.+++|+|++++|+||+|||-+.| ....+ . ....+..++++.+.++...
T Consensus 162 ~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 162 ASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred CchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHH
Confidence 445666799999999999999999999999995433 22211 1 1233455666555554332
Q ss_pred c--------------CeEEecCCCCccccc---ccc--CCCCHHHHHHHHHcCCCCCChhhhhcccccc-----hHHHHH
Q psy7790 152 L--------------RILVEGDDVPPACCS---FRL--MKLPESLVRALEAKGIKKPTPIQVQGIPAAL-----SEDVRT 207 (367)
Q Consensus 152 ~--------------~i~~~g~~~~~~~~~---f~~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l-----~~~v~~ 207 (367)
+ .+..||... ..... ..+ +++++-.+..|.. +..-+++.+- .+.+..
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l~~L~~--------v~~VVIDEaHEr~~~~DllL~ 312 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTLNKLFD--------YGTVIIDEVHEHDQIGDIIIA 312 (675)
T ss_pred HHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccccccccc--------CCEEEccccccCccchhHHHH
Confidence 1 223444431 10000 111 2333211111221 2222222221 144455
Q ss_pred HHhhc-cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec----------hhhHHHHHHHH
Q psy7790 208 IFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK----------QEAKIVYLLEC 276 (367)
Q Consensus 208 Il~~l-~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~----------~~~k~~~l~~~ 276 (367)
+++.+ +..+|+++||||++.++..+ ..+++++..+.+... +...+.+.+.... ...+ ..+...
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~ 386 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTA 386 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHH-HHHHHH
Confidence 55444 34479999999999888877 578899988887532 3345666654322 1112 122333
Q ss_pred Hh----hcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHH-hcCCCcEEEecccccccCCcCC
Q psy7790 277 LQ----KTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESF-RKGQKDVMVATDVASKGLDFEE 349 (367)
Q Consensus 277 l~----~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F-~~g~~~vLVaTd~~~rGlDi~~ 349 (367)
+. ..++++||||+++.+|+.+++.|... ++.+.++||+|++. .+++++| ++|+.+||||||+|+||||||+
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~ 464 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRN 464 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccC
Confidence 32 23467999999999999999999877 79999999999975 5677887 7899999999999999999999
Q ss_pred CCEEEEcCC
Q psy7790 350 IKHVINTEA 358 (367)
Q Consensus 350 v~~VI~yd~ 358 (367)
|++||++|.
T Consensus 465 V~~VID~G~ 473 (675)
T PHA02653 465 ATHVYDTGR 473 (675)
T ss_pred eeEEEECCC
Confidence 999999993
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.94 E-value=1.9e-26 Score=242.68 Aligned_cols=259 Identities=13% Similarity=0.083 Sum_probs=174.3
Q ss_pred cccChHHHhHHHHHHHHHHhHhc------ccccccccccCCcc--ccCcccccc--cCCccccCCCHHHHHHH----Hhc
Q psy7790 86 KKESAKEKQLKEEEKILRSVAET------KALMGVAELAKGIQ--YNDPIKTSW--RAPRCILSLPDQVHDII----RRN 151 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g------~d~~~~a~TgsGKT--~~~p~~~~~--~~~~~i~~~~~~~~~~~----~~~ 151 (367)
..-.+|++ |+++|+.++.+ .|++++++||+||| +..++.... .....+.+++.+++.+. ++.
T Consensus 597 ~~~~~T~~----Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 597 FPFETTPD----QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred CCCCCCHH----HHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 34578888 99999999998 89999999999999 333322111 22344556665554443 332
Q ss_pred c---Ce----EEecCCCCccccccc-------c--CCCCHHHHHH--HHHcCCCCCChhhhhcccccchHHHHHHHhhcc
Q psy7790 152 L---RI----LVEGDDVPPACCSFR-------L--MKLPESLVRA--LEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR 213 (367)
Q Consensus 152 ~---~i----~~~g~~~~~~~~~f~-------~--l~~p~~ll~~--l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~ 213 (367)
+ .+ ..++.+...+...+. + ++||+-+... +.+.++..-.+.|. |.......++.++
T Consensus 673 ~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahr------fG~~~~e~lk~l~ 746 (1147)
T PRK10689 673 FANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHR------FGVRHKERIKAMR 746 (1147)
T ss_pred hccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhh------cchhHHHHHHhcC
Confidence 1 12 223333322222111 1 5677533211 11111111111111 1122345567788
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHH
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQD 293 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~ 293 (367)
.++|+++||||.++.+..++...++++..|....... ..+.+.+...........++..+. .+++++||||+++.
T Consensus 747 ~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r----~~v~~~~~~~~~~~~k~~il~el~-r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR----LAVKTFVREYDSLVVREAILREIL-RGGQVYYLYNDVEN 821 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC----CCceEEEEecCcHHHHHHHHHHHh-cCCeEEEEECCHHH
Confidence 8999999999999998899888999998887644322 234454444433222223333333 25789999999999
Q ss_pred HHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE-----EcCCC
Q psy7790 294 VDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI-----NTEAK 359 (367)
Q Consensus 294 ~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI-----~yd~P 359 (367)
++.+++.|... ++++..+||+|++.+|.+++.+|++|+++|||||++++||||+|+|++|| ||++|
T Consensus 822 ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 99999999887 78999999999999999999999999999999999999999999999999 66665
No 50
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=5.4e-26 Score=232.78 Aligned_cols=253 Identities=13% Similarity=0.123 Sum_probs=174.2
Q ss_pred HHHHHHhHhcccccccccccCCcc--ccCcccccc-c-CCccccCCCHHHHHHHHh----c----cCeEEe----cCCCC
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-R-APRCILSLPDQVHDIIRR----N----LRILVE----GDDVP 162 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-~-~~~~i~~~~~~~~~~~~~----~----~~i~~~----g~~~~ 162 (367)
.+++.++.++++++++|+|||||| |..|++... . ....+..++++.+.++.. . .+..+| |....
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~ 90 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV 90 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc
Confidence 567788889999999999999999 555555432 1 122334444443333322 2 222333 33221
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch---------HHHHHHHhhccCCceEEeecCCCcHHHHHHH
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS---------EDVRTIFSFFRGQRQTLLFSATMPKKIQNFA 233 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~---------~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~ 233 (367)
..... -.+.|||++++.+.... ....+..-+++.+-. .-+..+++.++.+.|+++||||++... .
T Consensus 91 ~~~t~-I~v~T~G~Llr~l~~d~--~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~---l 164 (812)
T PRK11664 91 GPNTR-LEVVTEGILTRMIQRDP--ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDR---L 164 (812)
T ss_pred CCCCc-EEEEChhHHHHHHhhCC--CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHH---H
Confidence 11111 13689999999887421 223333333333221 123445666788899999999998752 3
Q ss_pred HHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHH-----HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CC
Q psy7790 234 RSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIV-----YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KG 305 (367)
Q Consensus 234 ~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~ 305 (367)
..++.++..|.+... ...+.++|..+....++. .+..++....+.+||||+++.+++.+++.|.. .+
T Consensus 165 ~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~ 239 (812)
T PRK11664 165 QQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASD 239 (812)
T ss_pred HHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCC
Confidence 466776655554322 123566666555544443 35555655678899999999999999999986 58
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCc
Q psy7790 306 VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKK 362 (367)
Q Consensus 306 ~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~ 362 (367)
+.+..+||+|++.+|.++++.|++|+.+||||||+++||||||+|++|||+|+|+..
T Consensus 240 ~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 240 VLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred ceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 899999999999999999999999999999999999999999999999999999754
No 51
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=1.1e-25 Score=229.96 Aligned_cols=253 Identities=14% Similarity=0.121 Sum_probs=171.7
Q ss_pred HHHHHHhHhcccccccccccCCcc--ccCccccccc--CCccccCCCHHHHHH----HHhc----cCeEEe----cCCCC
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR--APRCILSLPDQVHDI----IRRN----LRILVE----GDDVP 162 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~--~~~~i~~~~~~~~~~----~~~~----~~i~~~----g~~~~ 162 (367)
.+++..+.++.+++++|+|||||| |..+++.... ..-.+..+++..+.+ +.+. .+..+| +.+..
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~ 87 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKV 87 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccccc
Confidence 467788888999999999999999 5555554321 122233444433333 3222 223333 21111
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch---------HHHHHHHhhccCCceEEeecCCCcHHHHHHH
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS---------EDVRTIFSFFRGQRQTLLFSATMPKKIQNFA 233 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~---------~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~ 233 (367)
... .--.+.|++.+++.+.... ....+..-+|+.+-. .-+..+...++.+.|+++||||++... .
T Consensus 88 s~~-t~I~v~T~G~Llr~l~~d~--~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l 161 (819)
T TIGR01970 88 SRR-TRLEVVTEGILTRMIQDDP--ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---L 161 (819)
T ss_pred CCC-CcEEEECCcHHHHHHhhCc--ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---H
Confidence 000 1112679999999887521 223333333333221 112345556778899999999998764 3
Q ss_pred HHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHH-----HHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CC
Q psy7790 234 RSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKI-----VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KG 305 (367)
Q Consensus 234 ~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~ 305 (367)
..++.++..|.+.... ..+.++|..+....++ ..+..++....+.+||||+++.+++.++..|.. .+
T Consensus 162 ~~~l~~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~ 236 (819)
T TIGR01970 162 SSLLPDAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSD 236 (819)
T ss_pred HHHcCCCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCC
Confidence 4677776666554321 2355666655544432 344555555678899999999999999999987 47
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCc
Q psy7790 306 VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKK 362 (367)
Q Consensus 306 ~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~ 362 (367)
+.+..+||+|++.+|.++++.|++|+.+||||||++++|||||+|++|||+|+|+..
T Consensus 237 ~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~ 293 (819)
T TIGR01970 237 VLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVA 293 (819)
T ss_pred cEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccc
Confidence 999999999999999999999999999999999999999999999999999999754
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.94 E-value=1.6e-25 Score=231.07 Aligned_cols=259 Identities=13% Similarity=0.097 Sum_probs=174.6
Q ss_pred ccChHHHhHHHHHHHHHHhHhc------ccccccccccCCcc--ccCcccccc--cCCccccCCCHHHHHHHHh----c-
Q psy7790 87 KESAKEKQLKEEEKILRSVAET------KALMGVAELAKGIQ--YNDPIKTSW--RAPRCILSLPDQVHDIIRR----N- 151 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~g------~d~~~~a~TgsGKT--~~~p~~~~~--~~~~~i~~~~~~~~~~~~~----~- 151 (367)
+-.+|+. |.++|+.++++ .|.+++|+||+||| |..|+.... .....+.+++..++.+... .
T Consensus 449 ~f~~T~~----Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 449 PFEETPD----QLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERF 524 (926)
T ss_pred CCCCCHH----HHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 4568888 99999999985 79999999999999 555554332 1234556666655555433 2
Q ss_pred --cCe----EEecCCCC---cccccccc------CCCCHHHHHHHHHcCCCCCChhhhhccccc--chHHHHHHHhhccC
Q psy7790 152 --LRI----LVEGDDVP---PACCSFRL------MKLPESLVRALEAKGIKKPTPIQVQGIPAA--LSEDVRTIFSFFRG 214 (367)
Q Consensus 152 --~~i----~~~g~~~~---~~~~~f~~------l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~--l~~~v~~Il~~l~~ 214 (367)
+.+ +.++.... .....+.. +|||. ++. ..+ ....+..-+++.. +....+..++.++.
T Consensus 525 ~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll~----~~v-~f~~L~llVIDEahrfgv~~~~~L~~~~~ 598 (926)
T TIGR00580 525 ANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-LLQ----KDV-KFKDLGLLIIDEEQRFGVKQKEKLKELRT 598 (926)
T ss_pred ccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hhh----CCC-CcccCCEEEeecccccchhHHHHHHhcCC
Confidence 122 12222110 11111111 46663 221 111 1111222222221 22345666777788
Q ss_pred CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHH
Q psy7790 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDV 294 (367)
Q Consensus 215 ~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~ 294 (367)
++|+++||||.++....++...+.++..|.....+. ..+.+.+.......-...+...+. .+++++||||+++.+
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R----~~V~t~v~~~~~~~i~~~i~~el~-~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR----LPVRTFVMEYDPELVREAIRRELL-RGGQVFYVHNRIESI 673 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc----cceEEEEEecCHHHHHHHHHHHHH-cCCeEEEEECCcHHH
Confidence 899999999988888877777778887776544332 234444443332222223333333 467899999999999
Q ss_pred HHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCC
Q psy7790 295 DAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 295 ~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~ 360 (367)
+.+++.|+.. ++++..+||+|++.+|.+++++|++|+++|||||++++||||+|+|++||++++|.
T Consensus 674 e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~ 741 (926)
T TIGR00580 674 EKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK 741 (926)
T ss_pred HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC
Confidence 9999999875 78999999999999999999999999999999999999999999999999999986
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.93 E-value=4.2e-26 Score=234.70 Aligned_cols=285 Identities=16% Similarity=0.158 Sum_probs=179.8
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHH-hHhcccccccccccCCcc--ccCcccccccC--CccccCCC-
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRS-VAETKALMGVAELAKGIQ--YNDPIKTSWRA--PRCILSLP- 141 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~-i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~--~~~i~~~~- 141 (367)
.|++|++++.+.+.+.+.+ ..+++. |.++++. +++|+|++++|||||||| |..|+...+.+ ...+..++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~----Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~r 77 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPP----QAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLR 77 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHH----HHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChH
Confidence 5788899999999987766 777888 9999998 789999999999999999 66777776532 22233334
Q ss_pred ---HHHHHHHHhc--cCe----EEecCCCCccccccc--c--CCCCHHHHHHHHHcCCCCCChhhhhccccc-------c
Q psy7790 142 ---DQVHDIIRRN--LRI----LVEGDDVPPACCSFR--L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA-------L 201 (367)
Q Consensus 142 ---~~~~~~~~~~--~~i----~~~g~~~~~~~~~f~--~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-------l 201 (367)
.|.+..+++. +++ ..|+.+... ..+. + ++||+++...+... ......+..-+++.+ .
T Consensus 78 aLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~--~~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 78 ALASEKFEEFERFEELGVRVGISTGDYDSRD--EWLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCcCccc--cccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccCCCcc
Confidence 4444444431 132 223332211 1111 1 67999987776532 111112222222221 1
Q ss_pred hHHHHHHHhhc---cCCceEEeecCCCcHHHHHHHHHhcCC--------CEEEEeC--CCCccCCCCcceEEEEEec-hh
Q psy7790 202 SEDVRTIFSFF---RGQRQTLLFSATMPKKIQNFARSALVK--------PITINVG--RAGKIMPSMNVVQEVEYVK-QE 267 (367)
Q Consensus 202 ~~~v~~Il~~l---~~~~Q~il~SAT~~~~v~~l~~~~l~~--------~~~i~~~--~~~~~~~~~~i~~~~~~~~-~~ 267 (367)
...++.++.++ ..+.|++++|||++. ...++ .++.. |+.+..+ ..... .... .+....+. ..
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n-~~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~-~~~~-~~~~~~~~~~~ 230 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELA-DWLDAELVDSEWRPIDLREGVFYGGAI-HFDD-SQREVEVPSKD 230 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHH-HHhCCCcccCCCCCCCCeeeEecCCee-cccc-ccccCCCccch
Confidence 13445555444 567899999999975 23333 33321 1111110 00000 0000 01111111 12
Q ss_pred hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCC------------------------------------CeEEEE
Q psy7790 268 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG------------------------------------VEAVAI 311 (367)
Q Consensus 268 ~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~------------------------------------~~~~~l 311 (367)
.....+.+.+. .++++||||+|++.|+.++..|.... ..++.+
T Consensus 231 ~~~~~~~~~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 231 DTLNLVLDTLE-EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHHHH-cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 23333444333 46789999999999999988885431 368899
Q ss_pred ecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE----cC-----CCCCcccc
Q psy7790 312 HGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN----TE-----AKIKKREH 365 (367)
Q Consensus 312 hg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----yd-----~P~~~~~Y 365 (367)
||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y 372 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEY 372 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHH
Confidence 99999999999999999999999999999999999999999998 77 56666655
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.92 E-value=2.5e-24 Score=218.89 Aligned_cols=261 Identities=12% Similarity=0.100 Sum_probs=166.2
Q ss_pred cccChHHHhHHHHHHHHHHhHhc------ccccccccccCCcc--ccCcccccccC--CccccCCCHHHHHHHHhc----
Q psy7790 86 KKESAKEKQLKEEEKILRSVAET------KALMGVAELAKGIQ--YNDPIKTSWRA--PRCILSLPDQVHDIIRRN---- 151 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g------~d~~~~a~TgsGKT--~~~p~~~~~~~--~~~i~~~~~~~~~~~~~~---- 151 (367)
..-.+|+. |+++|+.|..+ .+++.+|+|||||| |..|+...... ...+.+++.+++.+....
T Consensus 258 l~f~lt~~----Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l 333 (681)
T PRK10917 258 LPFELTGA----QKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKL 333 (681)
T ss_pred CCCCCCHH----HHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 34567887 99999999987 37899999999999 66776554322 345566666555544332
Q ss_pred ---c----CeEEecCCCCc---cccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhccccc--chHHHHHHHhhcc
Q psy7790 152 ---L----RILVEGDDVPP---ACCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA--LSEDVRTIFSFFR 213 (367)
Q Consensus 152 ---~----~i~~~g~~~~~---~~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~--l~~~v~~Il~~l~ 213 (367)
+ .+..||..... ....+. + +|||+.+.+.+. | ..+..-+++.. +....+..+....
T Consensus 334 ~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~---~---~~l~lvVIDE~Hrfg~~qr~~l~~~~ 407 (681)
T PRK10917 334 LEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVE---F---HNLGLVIIDEQHRFGVEQRLALREKG 407 (681)
T ss_pred HhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccch---h---cccceEEEechhhhhHHHHHHHHhcC
Confidence 1 22334443211 111111 1 578877654321 1 11111122211 1122334444445
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHH-HHHHHHHhhcCCCeEEeeccH-
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKI-VYLLECLQKTEPPVLIFAEKK- 291 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~~l~~~~~~~iVF~~s~- 291 (367)
..+++++||||..+....+......+...+.....+ ...+.+.+.......+. ..+.+.+ ..+.+++|||++.
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~----r~~i~~~~~~~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie 482 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG----RKPITTVVIPDSRRDEVYERIREEI-AKGRQAYVVCPLIE 482 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC----CCCcEEEEeCcccHHHHHHHHHHHH-HcCCcEEEEEcccc
Confidence 578999999998777665544333333333322221 22344444443333333 2333333 4567899999954
Q ss_pred -------HHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCC
Q psy7790 292 -------QDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIK 361 (367)
Q Consensus 292 -------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~ 361 (367)
..++.+++.|... ++++..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+|++|..
T Consensus 483 ~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 483 ESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERF 561 (681)
T ss_pred cccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCC
Confidence 4567788888765 579999999999999999999999999999999999999999999999999999974
No 55
>PRK00254 ski2-like helicase; Provisional
Probab=99.92 E-value=1e-24 Score=223.88 Aligned_cols=275 Identities=16% Similarity=0.161 Sum_probs=176.6
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHH-hHhcccccccccccCCcc--ccCcccccccC---CccccCCC
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRS-VAETKALMGVAELAKGIQ--YNDPIKTSWRA---PRCILSLP 141 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~-i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~---~~~i~~~~ 141 (367)
.|++|++++.+.+.+...+ +.+++. |.++++. ++.|+|++++|||||||| |..|+...+.. ...+..++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~----Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~ 77 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPP----QAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPL 77 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHH----HHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeCh
Confidence 4678889999999987777 778888 9999986 889999999999999999 66777665421 22233334
Q ss_pred ----HHHHHHHHh--ccCeE----EecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhccccc-------
Q psy7790 142 ----DQVHDIIRR--NLRIL----VEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPAA------- 200 (367)
Q Consensus 142 ----~~~~~~~~~--~~~i~----~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~------- 200 (367)
.+.+..+.. .+++. .|+.+... ..+.. ++||+++...+.... .....+..-+++.+
T Consensus 78 ~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~--~~~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKDWEKLGLRVAMTTGDYDSTD--EWLGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCCCCch--hhhccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcCcCccCCcc
Confidence 444444442 12232 23332211 11111 678998876665321 11122222222221
Q ss_pred chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCc-ceEEEEEechh-------hHHHH
Q psy7790 201 LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN-VVQEVEYVKQE-------AKIVY 272 (367)
Q Consensus 201 l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~-i~~~~~~~~~~-------~k~~~ 272 (367)
....+..++.++...+|++++|||++. ...++. ++.........+... .... +.+.+...... .....
T Consensus 155 rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rpv~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 155 RGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVSDWRPVK--LRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred chHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCCCc--ceeeEecCCeeeccCcchhcchHHHHHH
Confidence 226778888888889999999999975 345553 554332211111100 0001 11112222111 11122
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC---------------------------------CCeEEEEecCCCHHH
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK---------------------------------GVEAVAIHGGKDQEE 319 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~~~~~~ 319 (367)
+.+.+. .+.++||||+|++.|+.++..|... ...+..+||+|++.+
T Consensus 231 ~~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~e 309 (720)
T PRK00254 231 VYDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTE 309 (720)
T ss_pred HHHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHH
Confidence 333343 4678999999999999887666321 235899999999999
Q ss_pred HHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
|..+++.|++|.++|||||+++++|+|+|.+++||+
T Consensus 310 R~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~ 345 (720)
T PRK00254 310 RVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIR 345 (720)
T ss_pred HHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEEC
Confidence 999999999999999999999999999999999994
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=1.4e-24 Score=230.19 Aligned_cols=188 Identities=17% Similarity=0.200 Sum_probs=125.0
Q ss_pred CCCCHHHHHHHHHcCCCCCChhhhhccccc---c--------hHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcC-
Q psy7790 171 MKLPESLVRALEAKGIKKPTPIQVQGIPAA---L--------SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV- 238 (367)
Q Consensus 171 l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~---l--------~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~- 238 (367)
+.||+++...|..........+..-+++.+ + ...+..|...++...|+|+||||+++ ...+++ ++.
T Consensus 104 VTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g 181 (1490)
T PRK09751 104 ITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGG 181 (1490)
T ss_pred EecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcC
Confidence 689999988765432222233333333321 1 12344444445677899999999987 455554 443
Q ss_pred -CCEEEEeCCCCccCCCCcceEEEEEechhhH------------------------HHHHHHHHhhcCCCeEEeeccHHH
Q psy7790 239 -KPITINVGRAGKIMPSMNVVQEVEYVKQEAK------------------------IVYLLECLQKTEPPVLIFAEKKQD 293 (367)
Q Consensus 239 -~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k------------------------~~~l~~~l~~~~~~~iVF~~s~~~ 293 (367)
+++.|... ... ....+. .++.+....+ ...++..+. ...++||||||+..
T Consensus 182 ~~pv~Iv~~-~~~--r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~-~~~stLVFvNSR~~ 256 (1490)
T PRK09751 182 DRPVTVVNP-PAM--RHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVL-RHRSTIVFTNSRGL 256 (1490)
T ss_pred CCCEEEECC-CCC--cccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHh-cCCCEEEECCCHHH
Confidence 35555322 211 112222 1222211100 012222222 35679999999999
Q ss_pred HHHHHHHHHhCC---------------------------------CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 294 VDAIHEYLLLKG---------------------------------VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 294 ~~~l~~~L~~~~---------------------------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
|+.++..|+... +.+.++||+|++++|..+++.|++|++++||||+.
T Consensus 257 AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATss 336 (1490)
T PRK09751 257 AEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSS 336 (1490)
T ss_pred HHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcH
Confidence 999999997531 22678999999999999999999999999999999
Q ss_pred ccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 341 ASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 341 ~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+++||||++|++||||+.|.++.+|
T Consensus 337 LELGIDIg~VDlVIq~gsP~sVas~ 361 (1490)
T PRK09751 337 LELGIDMGAVDLVIQVATPLSVASG 361 (1490)
T ss_pred HHccCCcccCCEEEEeCCCCCHHHH
Confidence 9999999999999999999999877
No 57
>KOG0349|consensus
Probab=99.91 E-value=3.7e-25 Score=201.61 Aligned_cols=192 Identities=21% Similarity=0.319 Sum_probs=140.8
Q ss_pred CCCCHHHHHHHHHcCCCCCChhhhhcccc-------cchHHHHHHHhhcc------CCceEEeecCCCcH-HHHHHHHHh
Q psy7790 171 MKLPESLVRALEAKGIKKPTPIQVQGIPA-------ALSEDVRTIFSFFR------GQRQTLLFSATMPK-KIQNFARSA 236 (367)
Q Consensus 171 l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~-------~l~~~v~~Il~~l~------~~~Q~il~SAT~~~-~v~~l~~~~ 236 (367)
+|+|+|+++.+.+ |....|......++. ..++-|..+...+| ...|.+++|||+.. ++..+....
T Consensus 344 vGtpgRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~erv 422 (725)
T KOG0349|consen 344 VGTPGRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERV 422 (725)
T ss_pred ecCchhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhh
Confidence 5788888877653 333333332222221 12255666666664 34699999999853 477788888
Q ss_pred cCCCEEEEeCCCCccCCCCcceEEEEEechh--hHHHHH----------------------------HHHH---------
Q psy7790 237 LVKPITINVGRAGKIMPSMNVVQEVEYVKQE--AKIVYL----------------------------LECL--------- 277 (367)
Q Consensus 237 l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--~k~~~l----------------------------~~~l--------- 277 (367)
|+=|..+....... ....+.+.+..+.+. .-...| .++|
T Consensus 423 mhfptwVdLkgeD~--vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai 500 (725)
T KOG0349|consen 423 MHFPTWVDLKGEDL--VPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAI 500 (725)
T ss_pred ccCceeEecccccc--cchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhh
Confidence 88899988877665 555555555544321 111111 1111
Q ss_pred hhc-CCCeEEeeccHHHHHHHHHHHHhCC---CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 278 QKT-EPPVLIFAEKKQDVDAIHEYLLLKG---VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 278 ~~~-~~~~iVF~~s~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
.++ -.++||||.|+.+|+.|.++|...| ++|+++||+..+.+|...++.|+.+.++.|||||+++|||||.++-++
T Consensus 501 ~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 501 RRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred hhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceE
Confidence 111 2479999999999999999998774 799999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccc
Q psy7790 354 INTEAKIKKREH 365 (367)
Q Consensus 354 I~yd~P~~~~~Y 365 (367)
||..+|.+-.+|
T Consensus 581 invtlpd~k~ny 592 (725)
T KOG0349|consen 581 INVTLPDDKTNY 592 (725)
T ss_pred EEEecCcccchh
Confidence 999999998887
No 58
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.91 E-value=2.7e-23 Score=208.52 Aligned_cols=278 Identities=18% Similarity=0.157 Sum_probs=178.0
Q ss_pred hhHHHHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc----C-C---------cccc
Q psy7790 75 QHSELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR----A-P---------RCIL 138 (367)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~----~-~---------~~i~ 138 (367)
+++.+.+.....+.++|+. |..+|+.|.+|++++.+|||||||| --+|++..+. + + ..++
T Consensus 8 l~~~v~~~~~~~~~~~t~~----Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 8 LDPRVREWFKRKFTSLTPP----QRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred cCHHHHHHHHHhcCCCCHH----HHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 5778888887678999999 9999999999999999999999999 2244433321 1 1 1256
Q ss_pred CCCHHHHHHHHh---ccCeEE--ecCCCCccccccc--c-----CCCCHHH---------HHHHHHcCCCCCChhhhhcc
Q psy7790 139 SLPDQVHDIIRR---NLRILV--EGDDVPPACCSFR--L-----MKLPESL---------VRALEAKGIKKPTPIQVQGI 197 (367)
Q Consensus 139 ~~~~~~~~~~~~---~~~i~~--~g~~~~~~~~~f~--~-----l~~p~~l---------l~~l~~~g~~~pt~iQ~~~i 197 (367)
|+.++....++. .+++.+ --.+.+..-+... + +-||+.+ .+.+....|..-..++..+-
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 777776666654 233333 1112221111110 0 2344433 33333222222222221110
Q ss_pred c---ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCC--CEEEEeCCCCccCCCCcceEEEEEech------
Q psy7790 198 P---AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK--PITINVGRAGKIMPSMNVVQEVEYVKQ------ 266 (367)
Q Consensus 198 p---~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~------ 266 (367)
. .-|.-.+..+....+ +.|.|.+|||..+ ....++..... +..|....... .....+.....
T Consensus 164 sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k-----~~~i~v~~p~~~~~~~~ 236 (814)
T COG1201 164 SKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAK-----KLEIKVISPVEDLIYDE 236 (814)
T ss_pred cccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCC-----cceEEEEecCCcccccc
Confidence 0 001122333333334 8999999999974 33444443333 33333322222 11112221111
Q ss_pred ---hhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCC-CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q psy7790 267 ---EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG-VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS 342 (367)
Q Consensus 267 ---~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~ 342 (367)
......+.++++++. .+|||+||+..++.++..|+..+ ..+..+||+++.++|..+.++|++|+.+++|||..++
T Consensus 237 ~~~~~~~~~i~~~v~~~~-ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE 315 (814)
T COG1201 237 ELWAALYERIAELVKKHR-TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE 315 (814)
T ss_pred chhHHHHHHHHHHHhhcC-cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchh
Confidence 234555666666655 89999999999999999999887 8999999999999999999999999999999999999
Q ss_pred ccCCcCCCCEEEEcCCCCCccc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKRE 364 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~ 364 (367)
.|||+.+|+.||||+-|.++..
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r 337 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNR 337 (814)
T ss_pred hccccCCceEEEEeCCcHHHHH
Confidence 9999999999999999998754
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=3.8e-23 Score=204.19 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=118.6
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhc---CCCeEEeeccHHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT---EPPVLIFAEKKQD 293 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~iVF~~s~~~ 293 (367)
....||||++.....+...|..+++.|....... ....+.++++...+|...|.+.+... +.++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~----r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ----RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc----ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4567999999888888888888877776655432 23445567788888999999988653 5679999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC---CCC-----EEEEcCCCCCcccc
Q psy7790 294 VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE---EIK-----HVINTEAKIKKREH 365 (367)
Q Consensus 294 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~---~v~-----~VI~yd~P~~~~~Y 365 (367)
++.++..|...|+++..+||+++ +|...+..|+.+...|+||||+++||+||+ +|. |||||++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 99999999999999999999865 555666667777778999999999999999 776 99999999998776
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.90 E-value=5e-23 Score=207.99 Aligned_cols=261 Identities=12% Similarity=0.124 Sum_probs=159.2
Q ss_pred HhcccChHHHhHHHHHHHHHHhHhcc------cccccccccCCcc--ccCccccccc--CCccccCCCHHHHHHHHhc--
Q psy7790 84 EAKKESAKEKQLKEEEKILRSVAETK------ALMGVAELAKGIQ--YNDPIKTSWR--APRCILSLPDQVHDIIRRN-- 151 (367)
Q Consensus 84 ~~~~~~~~~~~~~~Q~~~i~~i~~g~------d~~~~a~TgsGKT--~~~p~~~~~~--~~~~i~~~~~~~~~~~~~~-- 151 (367)
....-.+|+. |+++|+.|+.+. +.+++++|||||| |..|+...+. ....+.+++..++.+..+.
T Consensus 230 ~~lpf~lt~~----Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~ 305 (630)
T TIGR00643 230 ASLPFKLTRA----QKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLR 305 (630)
T ss_pred HhCCCCCCHH----HHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 3345567887 999999999873 4799999999999 6666655432 2345566666555544332
Q ss_pred ---------cCeEEecCCCCc---cccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhccccc--ch-HHHHHHHh
Q psy7790 152 ---------LRILVEGDDVPP---ACCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA--LS-EDVRTIFS 210 (367)
Q Consensus 152 ---------~~i~~~g~~~~~---~~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~--l~-~~v~~Il~ 210 (367)
..+..||..... ....+. + ++||+.+.+.+. |. .+..-+++.. +. .+-..+..
T Consensus 306 ~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~---~~---~l~lvVIDEaH~fg~~qr~~l~~ 379 (630)
T TIGR00643 306 NLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE---FK---RLALVIIDEQHRFGVEQRKKLRE 379 (630)
T ss_pred HHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc---cc---ccceEEEechhhccHHHHHHHHH
Confidence 122334443221 111111 1 577776654321 11 1111111111 01 11122333
Q ss_pred hcc--CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh---hcCCCeE
Q psy7790 211 FFR--GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVL 285 (367)
Q Consensus 211 ~l~--~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~i 285 (367)
... ..+++++||||..+....+.....-+...+..-..+ ...+...+..... + ..++..+. ..+.+++
T Consensus 380 ~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~----r~~i~~~~~~~~~--~-~~~~~~i~~~l~~g~q~~ 452 (630)
T TIGR00643 380 KGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG----RKPITTVLIKHDE--K-DIVYEFIEEEIAKGRQAY 452 (630)
T ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC----CCceEEEEeCcch--H-HHHHHHHHHHHHhCCcEE
Confidence 332 268999999997766554433211122222211111 1223333332222 2 33344333 2456899
Q ss_pred EeeccH--------HHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 286 IFAEKK--------QDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 286 VF~~s~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
|||++. ..++.+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+
T Consensus 453 v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi 532 (630)
T TIGR00643 453 VVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI 532 (630)
T ss_pred EEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE
Confidence 999876 4567777887653 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy7790 356 TEAKIK 361 (367)
Q Consensus 356 yd~P~~ 361 (367)
|++|..
T Consensus 533 ~~~~r~ 538 (630)
T TIGR00643 533 EDAERF 538 (630)
T ss_pred eCCCcC
Confidence 999974
No 61
>KOG0351|consensus
Probab=99.90 E-value=1.8e-23 Score=213.65 Aligned_cols=262 Identities=16% Similarity=0.166 Sum_probs=171.0
Q ss_pred HHHHHHHHHhHhcccccccccccCCcc--ccCcccccc----cCCccccCCCHHHHHHHHhccCeEE--ecCCCCccccc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW----RAPRCILSLPDQVHDIIRRNLRILV--EGDDVPPACCS 167 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~----~~~~~i~~~~~~~~~~~~~~~~i~~--~g~~~~~~~~~ 167 (367)
..|.++|..++.|+|.++.++||+||+ |++|.+-.- ...+++..|..+++......+.... ++...+.+...
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i 346 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAI 346 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHH
Confidence 349999999999999999999999999 888865331 1123333333333333222221111 11111111111
Q ss_pred cccC-----------CCCHHHH------HHHHHcCCCCCChhhhhccccc---------ch---HHHHHHHhhccCCceE
Q psy7790 168 FRLM-----------KLPESLV------RALEAKGIKKPTPIQVQGIPAA---------LS---EDVRTIFSFFRGQRQT 218 (367)
Q Consensus 168 f~~l-----------~~p~~ll------~~l~~~g~~~pt~iQ~~~ip~~---------l~---~~v~~Il~~l~~~~Q~ 218 (367)
+..+ -+|..+. +.+....- +..+-.-+|+.+ |. ..+..+...++. ..+
T Consensus 347 ~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~--~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~ 423 (941)
T KOG0351|consen 347 LQKLANGNPIIKILYVTPEKVVASEGLLESLADLYA--RGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG-VPF 423 (941)
T ss_pred HHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccC--CCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC-CCe
Confidence 1111 1233222 22211110 000111122211 11 334444455554 799
Q ss_pred EeecCCCcHHHHHHHHHhc--CCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhc--CCCeEEeeccHHHH
Q psy7790 219 LLFSATMPKKIQNFARSAL--VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT--EPPVLIFAEKKQDV 294 (367)
Q Consensus 219 il~SAT~~~~v~~l~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~iVF~~s~~~~ 294 (367)
|.++||.+..++..+-..| +++.++.... ...|+...+..-........++..+... ...+||||.++.+|
T Consensus 424 iALTATAT~~v~~DIi~~L~l~~~~~~~~sf-----nR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~c 498 (941)
T KOG0351|consen 424 IALTATATERVREDVIRSLGLRNPELFKSSF-----NRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKEC 498 (941)
T ss_pred EEeehhccHHHHHHHHHHhCCCCcceecccC-----CCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchH
Confidence 9999999999988777755 4666433322 2346655555444334444455555543 34699999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 295 DAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 295 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+.++..|...|+++..||+||+..+|..+.+.|..++++|+|||=++++|||.|||+.||||++|++++.|
T Consensus 499 e~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~Y 569 (941)
T KOG0351|consen 499 EQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGY 569 (941)
T ss_pred HHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988
No 62
>PRK01172 ski2-like helicase; Provisional
Probab=99.90 E-value=5.6e-23 Score=210.04 Aligned_cols=278 Identities=17% Similarity=0.176 Sum_probs=168.5
Q ss_pred CcccHhhhHHHHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC--Ccccc----CC
Q psy7790 69 NISLLDQHSELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA--PRCIL----SL 140 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~--~~~i~----~~ 140 (367)
.|++|++.+.+.+..+..+-..++. |.++++.+.+|++++++|||||||| +..++...+.. ...+. ++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~l~~~----Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFELYDH----QRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCCCCHH----HHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHH
Confidence 4778889999999886655446666 9999999999999999999999999 44555444321 11222 33
Q ss_pred CHHHHHHHHh--ccC----eEEecCCCCcccccccc--CCCCHHHHHHHHHcCCCCCChhhhhccccc-------chHHH
Q psy7790 141 PDQVHDIIRR--NLR----ILVEGDDVPPACCSFRL--MKLPESLVRALEAKGIKKPTPIQVQGIPAA-------LSEDV 205 (367)
Q Consensus 141 ~~~~~~~~~~--~~~----i~~~g~~~~~~~~~f~~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-------l~~~v 205 (367)
..+.++.+.+ ..+ +.+|+.+.......-.+ +.||+++...+.... .....+..-+++.+ ....+
T Consensus 78 a~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 78 AMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchhccCCCccHHH
Confidence 3444444442 112 23344332221111112 578988766654311 10111111111111 11234
Q ss_pred HHHHh---hccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEE-----EEechh----hHHHHH
Q psy7790 206 RTIFS---FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV-----EYVKQE----AKIVYL 273 (367)
Q Consensus 206 ~~Il~---~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~-----~~~~~~----~k~~~l 273 (367)
+.++. .++.+.|++++|||++. ..+++. ++.-... .. ... +. .+...+ .+++.. .....+
T Consensus 157 e~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~-~~--~~r--~v-pl~~~i~~~~~~~~~~~~~~~~~~~~~ 228 (674)
T PRK01172 157 ETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLI-KS--NFR--PV-PLKLGILYRKRLILDGYERSQVDINSL 228 (674)
T ss_pred HHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCcc-CC--CCC--CC-CeEEEEEecCeeeecccccccccHHHH
Confidence 44443 44578899999999975 444543 4432221 11 111 00 011001 111111 112222
Q ss_pred HHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-------------------------CCeEEEEecCCCHHHHHHHHHHHh
Q psy7790 274 LECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-------------------------GVEAVAIHGGKDQEERTRSVESFR 328 (367)
Q Consensus 274 ~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lhg~~~~~~R~~~~~~F~ 328 (367)
+......++++||||+|++.|+.++..|... ...+..+||+|++++|..+++.|+
T Consensus 229 i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 229 IKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 2322345678999999999999999988643 124788999999999999999999
Q ss_pred cCCCcEEEecccccccCCcCCCCEEEEcCCCC
Q psy7790 329 KGQKDVMVATDVASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 329 ~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~ 360 (367)
+|.++|||||+++++|+|+|+. .||++|.|.
T Consensus 309 ~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~ 339 (674)
T PRK01172 309 NRYIKVIVATPTLAAGVNLPAR-LVIVRDITR 339 (674)
T ss_pred cCCCeEEEecchhhccCCCcce-EEEEcCceE
Confidence 9999999999999999999985 677777664
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.88 E-value=2.1e-22 Score=191.33 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=107.7
Q ss_pred HHHHHhhcc-CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech--hhHHHHHHHHHhh--
Q psy7790 205 VRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ--EAKIVYLLECLQK-- 279 (367)
Q Consensus 205 v~~Il~~l~-~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~~l~~-- 279 (367)
+..+++.+. .+.|+++||||+|..+..++......+......... ......+.+..+.. ..+...+..++..
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE---ERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc---ccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555555554 468999999999988877776654332211111110 00011233322222 2334444444432
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCC--eEEEEecCCCHHHHHHH----HHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGV--EAVAIHGGKDQEERTRS----VESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~----~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
.++++||||+|++.|+.++..|+..+. .+..+||+|++.+|.++ ++.|++|+..|||||++++||+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 357899999999999999999988765 59999999999999764 8999999999999999999999995 8999
Q ss_pred EEcCCCC
Q psy7790 354 INTEAKI 360 (367)
Q Consensus 354 I~yd~P~ 360 (367)
|+|..|.
T Consensus 300 i~~~~~~ 306 (358)
T TIGR01587 300 ITELAPI 306 (358)
T ss_pred EEcCCCH
Confidence 9998873
No 64
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.88 E-value=1.5e-21 Score=204.05 Aligned_cols=246 Identities=17% Similarity=0.221 Sum_probs=155.0
Q ss_pred HHHHHHHhHhcccccccccccCCccccCccc-cc--c--------cCCccccCCCHHHHHHHHhccC----eEEec-CCC
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQYNDPIK-TS--W--------RAPRCILSLPDQVHDIIRRNLR----ILVEG-DDV 161 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~~-~~--~--------~~~~~i~~~~~~~~~~~~~~~~----i~~~g-~~~ 161 (367)
-.+++..+..+..++++|+||||||-.+|.. .. + ..|+.+. +..++.++...++ -.+|- ...
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlA--ArsLA~RVA~El~~~lG~~VGY~vrf 156 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLA--ARTVANRIAEELETELGGCVGYKVRF 156 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHH--HHHHHHHHHHHHhhhhcceeceeecC
Confidence 4567777777777888899999999656621 11 1 1233332 2344555444433 22321 111
Q ss_pred Cccccc--cccCCCCHHHHHHHHHcCCCCCChhhhhcccccch---------HHHHHHHhhccCCceEEeecCCCcHHHH
Q psy7790 162 PPACCS--FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS---------EDVRTIFSFFRGQRQTLLFSATMPKKIQ 230 (367)
Q Consensus 162 ~~~~~~--f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~---------~~v~~Il~~l~~~~Q~il~SAT~~~~v~ 230 (367)
..+... --.++|||+|++.+....+ ...+..-+|+.+-. ..++.++.. +++.|+|+||||++. .
T Consensus 157 ~~~~s~~t~I~v~TpG~LL~~l~~d~~--Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSATid~--e 231 (1294)
T PRK11131 157 NDQVSDNTMVKLMTDGILLAEIQQDRL--LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSATIDP--E 231 (1294)
T ss_pred ccccCCCCCEEEEChHHHHHHHhcCCc--cccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEeeCCCCH--H
Confidence 111111 1126899999999875332 23333333333321 122222222 246899999999975 3
Q ss_pred HHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech------hhHHHHHHHHHh----hcCCCeEEeeccHHHHHHHHHH
Q psy7790 231 NFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ------EAKIVYLLECLQ----KTEPPVLIFAEKKQDVDAIHEY 300 (367)
Q Consensus 231 ~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~----~~~~~~iVF~~s~~~~~~l~~~ 300 (367)
.+++.+...|+ |.+.... ..+.+.+..+.. .+.+..++..+. ...+.+||||++..+++.+++.
T Consensus 232 ~fs~~F~~apv-I~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~ 305 (1294)
T PRK11131 232 RFSRHFNNAPI-IEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADA 305 (1294)
T ss_pred HHHHHcCCCCE-EEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHH
Confidence 56666655564 4554321 124445544422 223333433322 3356799999999999999999
Q ss_pred HHhCCCe---EEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC
Q psy7790 301 LLLKGVE---AVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 301 L~~~~~~---~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
|...+++ +.++||+|++.+|.++++. .|..+||||||++++|||||+|++|||+|+
T Consensus 306 L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl 364 (1294)
T PRK11131 306 LNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGT 364 (1294)
T ss_pred HHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCC
Confidence 9887654 7899999999999999986 578899999999999999999999999974
No 65
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.87 E-value=2.1e-21 Score=183.54 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=102.1
Q ss_pred HhhccCCceEEeecCCCcHHHHHHHHHh--cCCCEEEEeCCC-----------Cc-----cCCCCcceEEEEEechhhHH
Q psy7790 209 FSFFRGQRQTLLFSATMPKKIQNFARSA--LVKPITINVGRA-----------GK-----IMPSMNVVQEVEYVKQEAKI 270 (367)
Q Consensus 209 l~~l~~~~Q~il~SAT~~~~v~~l~~~~--l~~~~~i~~~~~-----------~~-----~~~~~~i~~~~~~~~~~~k~ 270 (367)
+.......+++++|||+++.+....... ++.+..+..+.. .. ....+.+.+.+.. ....+.
T Consensus 175 ~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~ 253 (357)
T TIGR03158 175 IRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKE 253 (357)
T ss_pred HHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhH
Confidence 3333445799999999999888777765 555554433330 00 0011245554444 222332
Q ss_pred H---HHHHHH----hh-cCCCeEEeeccHHHHHHHHHHHHhCC--CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 271 V---YLLECL----QK-TEPPVLIFAEKKQDVDAIHEYLLLKG--VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 271 ~---~l~~~l----~~-~~~~~iVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
. .+.+.+ .. .+.++||||||+..++.++..|+..+ +.+..+||.+++.+|.++ ++.+|||||++
T Consensus 254 ~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv 327 (357)
T TIGR03158 254 EELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTST 327 (357)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecH
Confidence 2 233333 22 34689999999999999999998764 688999999999998754 47899999999
Q ss_pred ccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 341 ASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 341 ~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
++|||||+++ +|| ++ |.++++|
T Consensus 328 ~~rGiDi~~~-~vi-~~-p~~~~~y 349 (357)
T TIGR03158 328 VDVGVDFKRD-WLI-FS-ARDAAAF 349 (357)
T ss_pred HhcccCCCCc-eEE-EC-CCCHHHH
Confidence 9999999987 666 55 8888776
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.5e-21 Score=196.82 Aligned_cols=142 Identities=21% Similarity=0.292 Sum_probs=108.5
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcc-eEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNV-VQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
....+|.|....-..+.+.|--+-+ .+. .+. +.... ..-.+++....|...|...+.. .+.++||||+|++
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~v~--~IP-t~k--p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~ 439 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNMEVV--QIP-TNR--PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIE 439 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCcEE--ECC-CCC--CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 4556778875555555444422222 222 212 11111 1134556778899999888865 4568999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCc---CCCC-----EEEEcCCCCCccc
Q psy7790 293 DVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDF---EEIK-----HVINTEAKIKKRE 364 (367)
Q Consensus 293 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi---~~v~-----~VI~yd~P~~~~~ 364 (367)
.++.++..|...|+++..+||++.+.+|..+...++.| .|+||||+++||+|| ++|. |||||++|.+...
T Consensus 440 ~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~ 517 (790)
T PRK09200 440 QSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRV 517 (790)
T ss_pred HHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHH
Confidence 99999999999999999999999999988888887766 799999999999999 7999 9999999999887
Q ss_pred c
Q psy7790 365 H 365 (367)
Q Consensus 365 Y 365 (367)
|
T Consensus 518 y 518 (790)
T PRK09200 518 D 518 (790)
T ss_pred H
Confidence 7
No 67
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=182.48 Aligned_cols=272 Identities=16% Similarity=0.187 Sum_probs=185.2
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHH-hHhcccccccccccCCcccc---CcccccccC------Cc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRS-VAETKALMGVAELAKGIQYN---DPIKTSWRA------PR 135 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~-i~~g~d~~~~a~TgsGKT~~---~p~~~~~~~------~~ 135 (367)
....+.|++++++++.++..+ +.-.|+ |.-++.+ +++|+|+++++.|+||||.. ..+...+.. --
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPV----Q~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLv 268 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPV----QVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLV 268 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecch----hhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEe
Confidence 457899999999999997776 555777 8888887 67999999999999999931 111111110 11
Q ss_pred cccCCCHHHHHHHHhcc-------CeEEecCCCCcc-----ccccc--c--CCCCHHHHHHHHHcCCCCCChhhhhcccc
Q psy7790 136 CILSLPDQVHDIIRRNL-------RILVEGDDVPPA-----CCSFR--L--MKLPESLVRALEAKGIKKPTPIQVQGIPA 199 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~~~-------~i~~~g~~~~~~-----~~~f~--~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~ 199 (367)
.+.++.+|.+..|+.++ .|.||-..+... ..+-. + +||-.-+--.| +.| ..+..|=.-+|+.
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lL-Rtg-~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLL-RTG-KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHH-HcC-CcccccceEEeee
Confidence 25678888888888753 344443332111 11111 1 56665544343 343 3333343344443
Q ss_pred cch-------HHHHHHHh---hccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec-hhh
Q psy7790 200 ALS-------EDVRTIFS---FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK-QEA 268 (367)
Q Consensus 200 ~l~-------~~v~~Il~---~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~ 268 (367)
+-. ..+.-++. ++-+..|.|.+|||+.. -..+++.+--+.+..+ +. +-.+..+++++. ..+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~----~R---PVplErHlvf~~~e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYD----ER---PVPLERHLVFARNESE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeec----CC---CCChhHeeeeecCchH
Confidence 322 23333333 33458999999999954 3556666544443322 11 223455666665 667
Q ss_pred HHHHHHHHHhh---------cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 269 KIVYLLECLQK---------TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 269 k~~~l~~~l~~---------~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
|...+.++... +.++||||++|+..|..|+.+|..+|+++.+||+||+..+|..+...|.++.+.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 77766666543 357899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcCCCCE
Q psy7790 340 VASKGLDFEEIKH 352 (367)
Q Consensus 340 ~~~rGlDi~~v~~ 352 (367)
+++-|+|||.-++
T Consensus 499 AL~AGVDFPASQV 511 (830)
T COG1202 499 ALAAGVDFPASQV 511 (830)
T ss_pred hhhcCCCCchHHH
Confidence 9999999996543
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.86 E-value=5.9e-21 Score=188.29 Aligned_cols=267 Identities=10% Similarity=0.063 Sum_probs=169.0
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCccccCccc-----ccccCCccccCCCHHHHHHHHhccC---------
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQYNDPIK-----TSWRAPRCILSLPDQVHDIIRRNLR--------- 153 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~~-----~~~~~~~~i~~~~~~~~~~~~~~~~--------- 153 (367)
..+.+. |+++++.++.+++.+++++||+|||...... .......++..++.++..++.+.+.
T Consensus 113 ~~~r~~----Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWY----QYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHH----HHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 345666 9999999999999999999999999433222 1222245667777777766655321
Q ss_pred --eEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhccc---ccchHHHHHHHhhccCCceEEeecCCCcHH
Q psy7790 154 --ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP---AALSEDVRTIFSFFRGQRQTLLFSATMPKK 228 (367)
Q Consensus 154 --i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip---~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~ 228 (367)
...+|..... ..---+++++.+.+.... .+. .+..-+++ .+....+..++..++..+++++||||.+..
T Consensus 189 ~~~i~~g~~~~~--~~~I~VaT~qsl~~~~~~-~~~---~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 189 MHKIYSGTAKDT--DAPIVVSTWQSAVKQPKE-WFD---QFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred eeEEecCcccCC--CCCEEEeeHHHHhhchhh-hcc---ccCEEEEEchhcccchhHHHHHHhhhccceEEEEeccCCCc
Confidence 2234432210 111126788887664321 111 11111211 123367888888888889999999998643
Q ss_pred HHHHH--HHhcCCCEEEEeCCCCc----cCCCCcceEE--------------------E-EEechhhHHHHHHHH---Hh
Q psy7790 229 IQNFA--RSALVKPITINVGRAGK----IMPSMNVVQE--------------------V-EYVKQEAKIVYLLEC---LQ 278 (367)
Q Consensus 229 v~~l~--~~~l~~~~~i~~~~~~~----~~~~~~i~~~--------------------~-~~~~~~~k~~~l~~~---l~ 278 (367)
..... ...++ ++...+..... ......+... + ..+....+...+... +.
T Consensus 263 ~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~ 341 (501)
T PHA02558 263 KANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA 341 (501)
T ss_pred cccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 22111 11122 12111110000 0000000000 0 001112232233332 33
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEec-ccccccCCcCCCCEEEEcC
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVAT-DVASKGLDFEEIKHVINTE 357 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT-d~~~rGlDi~~v~~VI~yd 357 (367)
..+.++||||++.+.++.+++.|...|+++..+||+|++.+|..+++.|++|+..||||| +++++|+|+|++++||++.
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEec
Confidence 445789999999999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred CCCCcccc
Q psy7790 358 AKIKKREH 365 (367)
Q Consensus 358 ~P~~~~~Y 365 (367)
+|++...|
T Consensus 422 p~~s~~~~ 429 (501)
T PHA02558 422 PSKSKIIV 429 (501)
T ss_pred CCcchhhh
Confidence 99887655
No 69
>KOG0353|consensus
Probab=99.85 E-value=3.5e-21 Score=173.22 Aligned_cols=263 Identities=17% Similarity=0.200 Sum_probs=175.6
Q ss_pred HHHHHHHHhHhcccccccccccCCcc--ccCccccc--cc-CCccccCCCHHHHHHHHhccCeEEecCC--C--------
Q psy7790 97 EEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTS--WR-APRCILSLPDQVHDIIRRNLRILVEGDD--V-------- 161 (367)
Q Consensus 97 ~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~--~~-~~~~i~~~~~~~~~~~~~~~~i~~~g~~--~-------- 161 (367)
-|..+|+..+.|+|++.+.|||.||+ |++|.+-. |. ....+..+..++.-+++. ++|...-.+ .
T Consensus 98 lq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkq-lgi~as~lnansske~~k~v 176 (695)
T KOG0353|consen 98 LQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQ-LGIDASMLNANSSKEEAKRV 176 (695)
T ss_pred hHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHH-hCcchhhccCcccHHHHHHH
Confidence 39999999999999999999999999 88887643 11 112233444455555554 233211000 0
Q ss_pred ----Ccccccccc-CCCCHHHHHH------HHH---cCCCCCChhh-h---hcccccchHH--HHHHHhhccCCceEEee
Q psy7790 162 ----PPACCSFRL-MKLPESLVRA------LEA---KGIKKPTPIQ-V---QGIPAALSED--VRTIFSFFRGQRQTLLF 221 (367)
Q Consensus 162 ----~~~~~~f~~-l~~p~~ll~~------l~~---~g~~~pt~iQ-~---~~ip~~l~~~--v~~Il~~l~~~~Q~il~ 221 (367)
...-..|+- .-+|..|... |.+ .||...-.|. . .-|..-|.++ ...|+++--++..++.+
T Consensus 177 ~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigl 256 (695)
T KOG0353|consen 177 EAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGL 256 (695)
T ss_pred HHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeee
Confidence 000111111 1245554432 221 1222110000 0 0011112222 23455555567789999
Q ss_pred cCCCcHHHHHHHHHhcCC--CEEEEeCCCCccCCCCcceEEEEEec--hhhHHHHHHHHHhhc--CCCeEEeeccHHHHH
Q psy7790 222 SATMPKKIQNFARSALVK--PITINVGRAGKIMPSMNVVQEVEYVK--QEAKIVYLLECLQKT--EPPVLIFAEKKQDVD 295 (367)
Q Consensus 222 SAT~~~~v~~l~~~~l~~--~~~i~~~~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~~l~~~--~~~~iVF~~s~~~~~ 295 (367)
+||.+..+...++..+.- ...+..+. ..+|+...+..-+ .++-+..+.+++... +...||||-|+++|+
T Consensus 257 tatatn~vl~d~k~il~ie~~~tf~a~f-----nr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 257 TATATNHVLDDAKDILCIEAAFTFRAGF-----NRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCE 331 (695)
T ss_pred ehhhhcchhhHHHHHHhHHhhheeeccc-----CCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHH
Confidence 999999999988886653 22333222 2345555554443 345567777777653 335899999999999
Q ss_pred HHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 296 AIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 296 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
.++..|+.+|+.+..||+.|.+.+|..+-+.|..|+++|+|||-++++|||.|+|++|||..+|+++++|
T Consensus 332 kva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksieny 401 (695)
T KOG0353|consen 332 KVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENY 401 (695)
T ss_pred HHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
No 70
>KOG0352|consensus
Probab=99.84 E-value=1e-20 Score=172.56 Aligned_cols=256 Identities=18% Similarity=0.197 Sum_probs=157.9
Q ss_pred HHHHHHHhHhc-ccccccccccCCcc--ccCcccccccC---CccccCCCHHHHHHHHhccCeEEecCCCCccccccccC
Q psy7790 98 EEKILRSVAET-KALMGVAELAKGIQ--YNDPIKTSWRA---PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLM 171 (367)
Q Consensus 98 Q~~~i~~i~~g-~d~~~~a~TgsGKT--~~~p~~~~~~~---~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~l 171 (367)
|++++..+..+ +||.+++|||+||+ |++|.+.+-.- ...+.++..++++.+.+ +.+-+...+ ..+..-
T Consensus 25 QE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLN--SKlSt~--- 98 (641)
T KOG0352|consen 25 QEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR-LKVPCESLN--SKLSTV--- 98 (641)
T ss_pred HHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh-cCCchhHhc--chhhHH---
Confidence 88888887655 89999999999999 88887655221 12245566666666554 122111110 000000
Q ss_pred CCCHHHHHHHHHcC----CCCCChhhh--hcccccch---------------------------HHHHH---HHhhccCC
Q psy7790 172 KLPESLVRALEAKG----IKKPTPIQV--QGIPAALS---------------------------EDVRT---IFSFFRGQ 215 (367)
Q Consensus 172 ~~p~~ll~~l~~~g----~~~pt~iQ~--~~ip~~l~---------------------------~~v~~---Il~~l~~~ 215 (367)
-..+++--|++.. |.--||-|. ..+..+|+ ++... +-+.+ ++
T Consensus 99 -ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~-~~ 176 (641)
T KOG0352|consen 99 -ERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC-PG 176 (641)
T ss_pred -HHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC-CC
Confidence 1122222222111 111111111 11111111 22211 11111 34
Q ss_pred ceEEeecCCCcHHHHHHHHH--hcCCCEEEEeCCCCccCCCCcceEEEEEec-hhhHHHHHH----HHHhh------c--
Q psy7790 216 RQTLLFSATMPKKIQNFARS--ALVKPITINVGRAGKIMPSMNVVQEVEYVK-QEAKIVYLL----ECLQK------T-- 280 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~--~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~----~~l~~------~-- 280 (367)
...+.++||.+++|+..+-. .|++|+-+.-..... .|+-.-+.+-+ -.+-+..|. ..|.+ .
T Consensus 177 vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR----~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K 252 (641)
T KOG0352|consen 177 VPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR----DNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKK 252 (641)
T ss_pred CceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh----hhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCC
Confidence 67889999999999886555 557787654433221 12111000000 011122222 22321 1
Q ss_pred --CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC
Q psy7790 281 --EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 281 --~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
.+-.||||.|++.|++++-.|...|+++.+||+|+...+|..+.+.|.+|++.|++||..+++|+|.|+|++||||++
T Consensus 253 ~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~ 332 (641)
T KOG0352|consen 253 TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSP 332 (641)
T ss_pred CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCc
Confidence 133899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q psy7790 359 KIKKREH 365 (367)
Q Consensus 359 P~~~~~Y 365 (367)
|.|+..|
T Consensus 333 ~qn~AgY 339 (641)
T KOG0352|consen 333 SQNLAGY 339 (641)
T ss_pred hhhhHHH
Confidence 9998877
No 71
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.83 E-value=2e-19 Score=188.91 Aligned_cols=251 Identities=17% Similarity=0.199 Sum_probs=153.2
Q ss_pred HHHHHHHhHhcccccccccccCCccccCccccc---c--------cCCccccCCC--HHHHHHHHhccCeEEec-CCCCc
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQYNDPIKTS---W--------RAPRCILSLP--DQVHDIIRRNLRILVEG-DDVPP 163 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~~~~---~--------~~~~~i~~~~--~~~~~~~~~~~~i~~~g-~~~~~ 163 (367)
..+++..+.....++++|+||||||-..|.... + ..|+.+++.+ ..++..+....+-.||. .....
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~ 151 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD 151 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc
Confidence 356777777777889999999999944442211 1 2233333211 23333333333444543 12222
Q ss_pred ccc--ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch---------HHHHHHHhhccCCceEEeecCCCcHHHHHH
Q psy7790 164 ACC--SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS---------EDVRTIFSFFRGQRQTLLFSATMPKKIQNF 232 (367)
Q Consensus 164 ~~~--~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~---------~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l 232 (367)
... +--.+.|+|.|++.+....+ ...+..-+|+.+-. .-++.++.. ..+.|+|+||||++. ..+
T Consensus 152 ~~s~~T~I~~~TdGiLLr~l~~d~~--L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld~--~~f 226 (1283)
T TIGR01967 152 QVSSNTLVKLMTDGILLAETQQDRF--LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATIDP--ERF 226 (1283)
T ss_pred ccCCCceeeeccccHHHHHhhhCcc--cccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcCH--HHH
Confidence 221 11236899999998865322 11222222222211 123333332 357899999999974 456
Q ss_pred HHHhcCCCEEEEeCCCCccCCCCcceEEEEEech------hhHHHHHHHHH----hhcCCCeEEeeccHHHHHHHHHHHH
Q psy7790 233 ARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ------EAKIVYLLECL----QKTEPPVLIFAEKKQDVDAIHEYLL 302 (367)
Q Consensus 233 ~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l----~~~~~~~iVF~~s~~~~~~l~~~L~ 302 (367)
++.+...|+ |.+..... .+...|..+.. ..+...+...+ ....+.+|||+++..+++.+++.|.
T Consensus 227 a~~F~~apv-I~V~Gr~~-----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~ 300 (1283)
T TIGR01967 227 SRHFNNAPI-IEVSGRTY-----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILR 300 (1283)
T ss_pred HHHhcCCCE-EEECCCcc-----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 665555554 44432211 23333333221 12333333333 3345789999999999999999998
Q ss_pred hCC---CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCC
Q psy7790 303 LKG---VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIK 361 (367)
Q Consensus 303 ~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~ 361 (367)
..+ +.+..+||+|++++|.++++.+ +..+||||||++++|||||+|++||++|+|+.
T Consensus 301 ~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~ 360 (1283)
T TIGR01967 301 KRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARI 360 (1283)
T ss_pred hcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccc
Confidence 764 5689999999999999986654 24689999999999999999999999998864
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.82 E-value=1e-19 Score=187.15 Aligned_cols=267 Identities=18% Similarity=0.199 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-CC-c--c----ccCCCHHHHHHHHhc---cC--eE---
Q psy7790 94 QLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-AP-R--C----ILSLPDQVHDIIRRN---LR--IL--- 155 (367)
Q Consensus 94 ~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-~~-~--~----i~~~~~~~~~~~~~~---~~--i~--- 155 (367)
....|.+++..+.+|+|++++++|||||| |.+|++.++. .+ . . ..||.+++...+++- +. +.
T Consensus 71 lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~ 150 (851)
T COG1205 71 LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGR 150 (851)
T ss_pred ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeee
Confidence 78889999999999999999999999999 9999998752 22 2 1 367778888888763 22 11
Q ss_pred EecCCCCcccc-cc-cc----CCCCHHHHHHHHHcCCCCCCh----hhhhccccc------ch-------HHHHHHHhhc
Q psy7790 156 VEGDDVPPACC-SF-RL----MKLPESLVRALEAKGIKKPTP----IQVQGIPAA------LS-------EDVRTIFSFF 212 (367)
Q Consensus 156 ~~g~~~~~~~~-~f-~~----l~~p~~ll~~l~~~g~~~pt~----iQ~~~ip~~------l~-------~~v~~Il~~l 212 (367)
+.|. .++..+ .+ ++ +-|...+++.+.-.....+-- ...-+++.+ +. ..+..+++..
T Consensus 151 y~Gd-t~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~ 229 (851)
T COG1205 151 YTGD-TPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRY 229 (851)
T ss_pred ecCC-CChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhcc
Confidence 1222 221111 11 11 334455555522111111000 011111110 00 4555555556
Q ss_pred cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec------------hhhHHHHHHHHHhhc
Q psy7790 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK------------QEAKIVYLLECLQKT 280 (367)
Q Consensus 213 ~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~------------~~~k~~~l~~~l~~~ 280 (367)
+..+|+|+.|||+.. ...++..+.+......+...+. +... +..+.+-+ ...-...+...+-..
T Consensus 230 ~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g~--~~~~-~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~ 305 (851)
T COG1205 230 GSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDGS--PRGL-RYFVRREPPIRELAESIRRSALAELATLAALLVRN 305 (851)
T ss_pred CCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCCC--CCCc-eEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHc
Confidence 678999999999854 4566777776666654544444 2222 33333322 123345556666667
Q ss_pred CCCeEEeeccHHHHHHHH----HHHHhCC----CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCE
Q psy7790 281 EPPVLIFAEKKQDVDAIH----EYLLLKG----VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKH 352 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 352 (367)
+-++|+|+.++..++.+. ..+...+ ..+..++|+|...+|.++...|+.|+..++++|++++-|+||.+++.
T Consensus 306 ~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~lda 385 (851)
T COG1205 306 GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDA 385 (851)
T ss_pred CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhh
Confidence 889999999999999997 4454445 67999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC-Ccccc
Q psy7790 353 VINTEAKI-KKREH 365 (367)
Q Consensus 353 VI~yd~P~-~~~~Y 365 (367)
||+++.|. +..+|
T Consensus 386 vi~~g~P~~s~~~~ 399 (851)
T COG1205 386 VIAYGYPGVSVLSF 399 (851)
T ss_pred HhhcCCCCchHHHH
Confidence 99999998 65443
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.81 E-value=2.6e-19 Score=178.18 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=108.2
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh---hcCCCeEEeeccHHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVLIFAEKKQD 293 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~iVF~~s~~~ 293 (367)
....+|.|...+...+...|--+-+.|....+.. ... ..-.++....+|...+.+.+. ..+.|+||||+|++.
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~---R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVI---RKD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCee---eee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4456788886665555544433333322222111 111 112345566778888777663 346689999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCC-------CCEEEEcCCCCCcccc
Q psy7790 294 VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEE-------IKHVINTEAKIKKREH 365 (367)
Q Consensus 294 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~-------v~~VI~yd~P~~~~~Y 365 (367)
++.++..|...|+++..+||+ +.+|...+..|+.+...|+||||+|+||+||+. .-|||+|++|.|...|
T Consensus 418 se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 418 SELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 999999999999999999999 889999999999999999999999999999998 5599999999998765
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.80 E-value=5.4e-19 Score=176.93 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=105.9
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQD 293 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~ 293 (367)
....+|.|...+...|.+.|--+- +.+.+... ....-..-.+++....|...+.+.+.. .+.++||||+|++.
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~v--~~IPt~kp--~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLSV--VKIPTNKP--IIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEM 436 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCCE--EEcCCCCC--eeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHH
Confidence 455677887665566654442222 22222111 001111235677888899998887765 35679999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC---------CCCEEEEcCCCCCc
Q psy7790 294 VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE---------EIKHVINTEAKIKK 362 (367)
Q Consensus 294 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~---------~v~~VI~yd~P~~~ 362 (367)
++.++..|...|+++..+||.+.+.+|..+..+|+.| .|+||||+++||+||+ ++.+||+|++|...
T Consensus 437 se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r 512 (762)
T TIGR03714 437 SEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR 512 (762)
T ss_pred HHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcH
Confidence 9999999999999999999999999988887777766 7999999999999999 99999999999864
No 75
>PRK13766 Hef nuclease; Provisional
Probab=99.77 E-value=1.4e-17 Score=173.19 Aligned_cols=97 Identities=27% Similarity=0.447 Sum_probs=86.8
Q ss_pred HHHHHHHHHhh-----cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecC--------CCHHHHHHHHHHHhcCCCcEE
Q psy7790 269 KIVYLLECLQK-----TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGG--------KDQEERTRSVESFRKGQKDVM 335 (367)
Q Consensus 269 k~~~l~~~l~~-----~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~--------~~~~~R~~~~~~F~~g~~~vL 335 (367)
|+..|.++|.. .+.++||||+++..|+.|+.+|...|+.+..+||. |++.+|..++++|++|+.+||
T Consensus 348 K~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vL 427 (773)
T PRK13766 348 KLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVL 427 (773)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEE
Confidence 45555555543 34679999999999999999999999999999986 999999999999999999999
Q ss_pred EecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 336 VATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 336 VaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|||+++++|+|+|++++||+||+|.++..|
T Consensus 428 vaT~~~~eGldi~~~~~VI~yd~~~s~~r~ 457 (773)
T PRK13766 428 VSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457 (773)
T ss_pred EECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 999999999999999999999999988754
No 76
>KOG0354|consensus
Probab=99.73 E-value=3.4e-17 Score=161.35 Aligned_cols=82 Identities=33% Similarity=0.520 Sum_probs=73.5
Q ss_pred CCeEEeeccHHHHHHHHHHHHh---CCCeEEEEec--------CCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHG--------GKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg--------~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
.++||||++|..|+.|..+|.. .|++...+-| +|+|.+..+++++|+.|++.|||||.+++-||||+.|
T Consensus 414 sR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec 493 (746)
T KOG0354|consen 414 SRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGEC 493 (746)
T ss_pred ccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccc
Confidence 5799999999999999999972 2556555554 7999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCcc
Q psy7790 351 KHVINTEAKIKKR 363 (367)
Q Consensus 351 ~~VI~yd~P~~~~ 363 (367)
++||-||.-.|+.
T Consensus 494 ~lVIcYd~~snpI 506 (746)
T KOG0354|consen 494 NLVICYDYSSNPI 506 (746)
T ss_pred cEEEEecCCccHH
Confidence 9999999988864
No 77
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.6e-15 Score=140.81 Aligned_cols=82 Identities=32% Similarity=0.503 Sum_probs=74.3
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEE-EEe--------cCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCE
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAV-AIH--------GGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKH 352 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~lh--------g~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 352 (367)
.++|||++.+..++.|.++|...|.++. .|- .||+|.+..+++++|+.|.+.|||||.+++-|||||+|++
T Consensus 367 ~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 367 SRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred ceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccE
Confidence 4799999999999999999999988775 333 4799999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcc
Q psy7790 353 VINTEAKIKKR 363 (367)
Q Consensus 353 VI~yd~P~~~~ 363 (367)
||.|++=.|+.
T Consensus 447 VifYEpvpSeI 457 (542)
T COG1111 447 VIFYEPVPSEI 457 (542)
T ss_pred EEEecCCcHHH
Confidence 99999866543
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.68 E-value=3.3e-16 Score=159.19 Aligned_cols=265 Identities=15% Similarity=0.172 Sum_probs=150.5
Q ss_pred HHHHHHHHhHhc---ccccccccccCCcc--ccCccccccc--CCccccCCC----HHHHHHHHhccCe----EEecCCC
Q psy7790 97 EEEKILRSVAET---KALMGVAELAKGIQ--YNDPIKTSWR--APRCILSLP----DQVHDIIRRNLRI----LVEGDDV 161 (367)
Q Consensus 97 ~Q~~~i~~i~~g---~d~~~~a~TgsGKT--~~~p~~~~~~--~~~~i~~~~----~~~~~~~~~~~~i----~~~g~~~ 161 (367)
.|+++++.+.++ ++.+..++|||||| |..++...+. ....+..++ .+..+.+++.++. ..+|...
T Consensus 148 ~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~ 227 (679)
T PRK05580 148 EQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSD 227 (679)
T ss_pred HHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCH
Confidence 389999999874 88999999999999 6555443322 123333443 4555566554432 2233322
Q ss_pred Ccccccccc---------CCCCHHHHHHHHHcCCCCCChhhhhc-----ccccchHHHHHHHhhccCCceEEeecCCCcH
Q psy7790 162 PPACCSFRL---------MKLPESLVRALEAKGIKKPTPIQVQG-----IPAALSEDVRTIFSFFRGQRQTLLFSATMPK 227 (367)
Q Consensus 162 ~~~~~~f~~---------l~~p~~ll~~l~~~g~~~pt~iQ~~~-----ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~ 227 (367)
......|.. +|++..+.--+.+.++..-.+.+... -|..-..++. ++.....+.|++++|||.+.
T Consensus 228 ~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~ra~~~~~~~il~SATps~ 306 (679)
T PRK05580 228 GERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVRAKLENIPVVLGSATPSL 306 (679)
T ss_pred HHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHHhhccCCCEEEEcCCCCH
Confidence 222222211 56776654333222221111111000 0000002221 22334567899999999877
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhH-------HHHHHHHHhh---cCCCeEEeeccH------
Q psy7790 228 KIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAK-------IVYLLECLQK---TEPPVLIFAEKK------ 291 (367)
Q Consensus 228 ~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~~l~~---~~~~~iVF~~s~------ 291 (367)
+....+... ....+.....-.....+.+ .++......+ -..+++.+.+ .+.++|||+|++
T Consensus 307 ~s~~~~~~g--~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~ 382 (679)
T PRK05580 307 ESLANAQQG--RYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFL 382 (679)
T ss_pred HHHHHHhcc--ceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCce
Confidence 766555432 2222222211100011111 1111111000 1223333332 355788887752
Q ss_pred ------------------------------------------------------HHHHHHHHHHHhC--CCeEEEEecCC
Q psy7790 292 ------------------------------------------------------QDVDAIHEYLLLK--GVEAVAIHGGK 315 (367)
Q Consensus 292 ------------------------------------------------------~~~~~l~~~L~~~--~~~~~~lhg~~ 315 (367)
..++++.+.|... +.++..+|+++
T Consensus 383 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~ 462 (679)
T PRK05580 383 LCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDT 462 (679)
T ss_pred EhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccc
Confidence 2567888888776 88999999998
Q ss_pred C--HHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE--EEcCCCCCccccC
Q psy7790 316 D--QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV--INTEAKIKKREHG 366 (367)
Q Consensus 316 ~--~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V--I~yd~P~~~~~Y~ 366 (367)
. +.+|.++++.|++|+.+|||+|+++++|+|+|+|++| +++|.+.+..+|.
T Consensus 463 ~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 463 TRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 7 4679999999999999999999999999999999999 5667676666553
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.68 E-value=1.6e-16 Score=164.20 Aligned_cols=99 Identities=19% Similarity=0.367 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHH-HhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEeccccc
Q psy7790 267 EAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYL-LLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVATDVAS 342 (367)
Q Consensus 267 ~~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVaTd~~~ 342 (367)
+.|+.+|.++|... +.++||||+++..+..+++.| ...|+++..|||+|++.+|.++++.|+++ ..+|||||++++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 45777888888765 568999999999999999999 46699999999999999999999999985 599999999999
Q ss_pred ccCCcCCCCEEEEcCCCCCcccc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|+|++.+++|||||+|+|+..|
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~ 580 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLL 580 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHH
Confidence 99999999999999999999877
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.64 E-value=1.8e-14 Score=148.35 Aligned_cols=81 Identities=21% Similarity=0.366 Sum_probs=71.0
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCC---CeEEEEecCCCHHHH----HHHHHHH-hcCC---CcEEEecccccccCCcC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKG---VEAVAIHGGKDQEER----TRSVESF-RKGQ---KDVMVATDVASKGLDFE 348 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R----~~~~~~F-~~g~---~~vLVaTd~~~rGlDi~ 348 (367)
.+.++||||||++.|..+++.|+..+ .++..+||.+++.+| .++++.| ++|+ ..|||||+++++||||
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 45679999999999999999998764 689999999999999 4577888 6776 4799999999999999
Q ss_pred CCCEEEEcCCCCC
Q psy7790 349 EIKHVINTEAKIK 361 (367)
Q Consensus 349 ~v~~VI~yd~P~~ 361 (367)
+++++|.+.+|-+
T Consensus 638 d~DvlItdlaPid 650 (878)
T PRK09694 638 DFDWLITQLCPVD 650 (878)
T ss_pred CCCeEEECCCCHH
Confidence 6899999998843
No 81
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.63 E-value=3e-15 Score=152.40 Aligned_cols=255 Identities=17% Similarity=0.174 Sum_probs=147.6
Q ss_pred HHHHHHH-hHhcccccccccccCCccc--cCcccccccC-------CccccCCCHHHHHHHH--hccCeEE----ecCCC
Q psy7790 98 EEKILRS-VAETKALMGVAELAKGIQY--NDPIKTSWRA-------PRCILSLPDQVHDIIR--RNLRILV----EGDDV 161 (367)
Q Consensus 98 Q~~~i~~-i~~g~d~~~~a~TgsGKT~--~~p~~~~~~~-------~~~i~~~~~~~~~~~~--~~~~i~~----~g~~~ 161 (367)
|+.++.. +..|+|+++++|||||||. .+-+...+.. ..+++++..|.+..+. ..+++.| |+.+.
T Consensus 36 qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~ 115 (766)
T COG1204 36 QQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDL 115 (766)
T ss_pred HHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCccc
Confidence 4445544 5567999999999999992 1222222111 1224677778888877 4455554 33332
Q ss_pred Cc-cccccc-cCCCCHHHHHHHHHcCCCCCChhhhhccccc--ch-----HHHHHHHhhcc---CCceEEeecCCCcHHH
Q psy7790 162 PP-ACCSFR-LMKLPESLVRALEAKGIKKPTPIQVQGIPAA--LS-----EDVRTIFSFFR---GQRQTLLFSATMPKKI 229 (367)
Q Consensus 162 ~~-~~~~f~-~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~--l~-----~~v~~Il~~l~---~~~Q~il~SAT~~~~v 229 (367)
.. .+..-. -+.||.++-..+++.+. --..+-.-+++.+ +. .-++.|+.+++ ...|++.+|||+|. .
T Consensus 116 ~~~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~ 193 (766)
T COG1204 116 DDERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN-A 193 (766)
T ss_pred chhhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC-H
Confidence 21 111111 15678877666554332 1011111111111 11 23444444443 34799999999986 4
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechh---------hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHH
Q psy7790 230 QNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQE---------AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEY 300 (367)
Q Consensus 230 ~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~---------~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~ 300 (367)
..++...-.++. ...-+........-..+.+...... .+...++......++++||||+|++.+...+..
T Consensus 194 ~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~ 272 (766)
T COG1204 194 EEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKK 272 (766)
T ss_pred HHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHH
Confidence 445533222333 2222222111111223344444322 222222222334578999999999999999999
Q ss_pred HHhC---------------------C----------------CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q psy7790 301 LLLK---------------------G----------------VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASK 343 (367)
Q Consensus 301 L~~~---------------------~----------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~r 343 (367)
|+.. + ..++.+|+||+.++|..+.+.|+.|.++|||||+.++.
T Consensus 273 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~ 352 (766)
T COG1204 273 LRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAA 352 (766)
T ss_pred HHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhh
Confidence 8720 0 23678999999999999999999999999999999999
Q ss_pred cCCcCCCCEEEEc
Q psy7790 344 GLDFEEIKHVINT 356 (367)
Q Consensus 344 GlDi~~v~~VI~y 356 (367)
|++.|. +.||-.
T Consensus 353 GVNLPA-~~VIIk 364 (766)
T COG1204 353 GVNLPA-RTVIIK 364 (766)
T ss_pred hcCCcc-eEEEEe
Confidence 999995 444443
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=5.9e-15 Score=148.04 Aligned_cols=93 Identities=16% Similarity=0.284 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEEecccccc
Q psy7790 268 AKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMVATDVASK 343 (367)
Q Consensus 268 ~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVaTd~~~r 343 (367)
.|+..+..++.. .+.++||||++...++.++..| + +..+||++++.+|.+++++|++| .+++||+|+++.+
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgde 554 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDT 554 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccccc
Confidence 344444444543 3458999999999999998887 3 56699999999999999999975 7899999999999
Q ss_pred cCCcCCCCEEEEcCCCC-Ccccc
Q psy7790 344 GLDFEEIKHVINTEAKI-KKREH 365 (367)
Q Consensus 344 GlDi~~v~~VI~yd~P~-~~~~Y 365 (367)
|||+|++++||+++.|. |...|
T Consensus 555 GIDlP~a~vvI~~s~~~gS~~q~ 577 (732)
T TIGR00603 555 SIDLPEANVLIQISSHYGSRRQE 577 (732)
T ss_pred ccCCCCCCEEEEeCCCCCCHHHH
Confidence 99999999999999984 65544
No 83
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=1.4e-15 Score=153.87 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=92.5
Q ss_pred EEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh---hcCCCeEEeeccHHHH
Q psy7790 218 TLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVLIFAEKKQDV 294 (367)
Q Consensus 218 ~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~iVF~~s~~~~ 294 (367)
...+|.|...+...|...|--+-+.|....+.. ..+ ..-.++.....|...+.+.+. ..+.|+||||+|++.+
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~---R~d-~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~s 457 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMI---RKD-EADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEAS 457 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCCEEECCCCCCcc---eec-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 334677765555555544432322222221111 111 123456677888888877764 3467899999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 295 DAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 295 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
+.++..|...|+++..+||.+.+.+|..+.+.|+.|. |+||||+|+||+||.
T Consensus 458 E~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 458 EFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred HHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 9999999999999999999999999999999999994 999999999999985
No 84
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.1e-14 Score=147.13 Aligned_cols=126 Identities=16% Similarity=0.241 Sum_probs=94.8
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQD 293 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~ 293 (367)
....+|.|...+...|...|--+-+.|....+.. ..+ ..-.++....+|..++...+.. .+.|+||||+|++.
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~---r~d-~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMI---RID-HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCee---eee-CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4455788886665555554433333222221111 111 1224556777899998888854 35689999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 294 VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 294 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
++.++..|...|+++..+||. +.+|...+..|+.+...|+||||+|+||+||+
T Consensus 443 se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 443 SELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred HHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 999999999999999999996 88999999999999999999999999999996
No 85
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.58 E-value=4.7e-14 Score=113.79 Aligned_cols=99 Identities=35% Similarity=0.541 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHhhc---CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q psy7790 267 EAKIVYLLECLQKT---EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASK 343 (367)
Q Consensus 267 ~~k~~~l~~~l~~~---~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~r 343 (367)
+.|...+..++... +.++||||++...++.++.+|...+..+..+||+++..+|..+++.|.+|...+|++|..+++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 37888888888765 578999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcCCCCEEEEcCCCCCcccc
Q psy7790 344 GLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 344 GlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+|+|++++||+++.|.+...|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~ 112 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSY 112 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHh
Confidence 9999999999999999998765
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.58 E-value=1.9e-13 Score=122.42 Aligned_cols=253 Identities=17% Similarity=0.270 Sum_probs=156.1
Q ss_pred HHHhHHHHHHHHHHhHhcccccccccccCCcc---cc---Cccccc----ccCCccccCCCHHHHHHHHhcc-----CeE
Q psy7790 91 KEKQLKEEEKILRSVAETKALMGVAELAKGIQ---YN---DPIKTS----WRAPRCILSLPDQVHDIIRRNL-----RIL 155 (367)
Q Consensus 91 ~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT---~~---~p~~~~----~~~~~~i~~~~~~~~~~~~~~~-----~i~ 155 (367)
|+.|...-..++..+.+.+|.++.|-||+||| |. ..+.+. +..|+. -..-+++..+...+ .++
T Consensus 99 s~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRv--DVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 99 SPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRV--DVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcc--cchHHHHHHHHHhhccCCeeeE
Confidence 45544444556777888999999999999999 31 111111 111221 11123444444433 334
Q ss_pred EecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhc-cCCceEEeecCCCcHHHHHHHH
Q psy7790 156 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFF-RGQRQTLLFSATMPKKIQNFAR 234 (367)
Q Consensus 156 ~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l-~~~~Q~il~SAT~~~~v~~l~~ 234 (367)
.|+++. ..+.---+.|--.+++.-.. |...---...++|...+..+..-.+.. ....-+|++|||-|.++..-+.
T Consensus 177 yg~S~~--~fr~plvVaTtHQLlrFk~a--FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 177 YGDSDS--YFRAPLVVATTHQLLRFKQA--FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred ecCCch--hccccEEEEehHHHHHHHhh--ccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhh
Confidence 444432 11111114555556665332 221111124566777766666666554 4567899999999887776554
Q ss_pred HhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHH-------HHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhC
Q psy7790 235 SALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKI-------VYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK 304 (367)
Q Consensus 235 ~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-------~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~ 304 (367)
..-..++.+.....+.+++ .-.++++..-.|. ..|..+|.+ .+.+++||+++.+..+.++..|+..
T Consensus 253 ~g~~~~~klp~RfH~~pLp----vPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~ 328 (441)
T COG4098 253 KGNLRILKLPARFHGKPLP----VPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKK 328 (441)
T ss_pred hCCeeEeecchhhcCCCCC----CCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhh
Confidence 4333333333333333222 2345555443322 256666665 4568999999999999999999443
Q ss_pred -C-CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 305 -G-VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 305 -~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
+ ..++..|+. ...|.+.+++||+|+..+||+|.+++||+-+|+|+++|.
T Consensus 329 ~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 329 LPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred CCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe
Confidence 3 455788887 567999999999999999999999999999999998764
No 87
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.55 E-value=8.1e-14 Score=140.40 Aligned_cols=99 Identities=23% Similarity=0.361 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccc
Q psy7790 267 EAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASK 343 (367)
Q Consensus 267 ~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~r 343 (367)
..++..|+..+.. .+.++||||+|+..++.++++|...|+++..+||++++.+|.++++.|+.|++.|||||++++|
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3455566666654 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCEEEEcC-----CCCCcccc
Q psy7790 344 GLDFEEIKHVINTE-----AKIKKREH 365 (367)
Q Consensus 344 GlDi~~v~~VI~yd-----~P~~~~~Y 365 (367)
|+|+|++++||++| +|.+..+|
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~ 531 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSL 531 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHH
Confidence 99999999999999 79887765
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=2.9e-14 Score=140.22 Aligned_cols=72 Identities=17% Similarity=0.397 Sum_probs=62.4
Q ss_pred HHHHHHHHHhC--CCeEEEEecCCCHHHH--HHHHHHHhcCCCcEEEecccccccCCcCCCCEE--EEcCCCCCcccc
Q psy7790 294 VDAIHEYLLLK--GVEAVAIHGGKDQEER--TRSVESFRKGQKDVMVATDVASKGLDFEEIKHV--INTEAKIKKREH 365 (367)
Q Consensus 294 ~~~l~~~L~~~--~~~~~~lhg~~~~~~R--~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V--I~yd~P~~~~~Y 365 (367)
++++.+.|... +.++..+|+++++..+ ..+++.|++|+.+|||+|+++++|+|+|+|++| +|+|..-+.-+|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 58888888876 7899999999987766 899999999999999999999999999999998 577765554444
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=1.8e-13 Score=132.84 Aligned_cols=94 Identities=28% Similarity=0.374 Sum_probs=82.7
Q ss_pred HHHHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 271 VYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 271 ~~l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
..+..++..+ +.+++|||.+...+..++..|...|+ +..+.|..++.+|..+++.|+.|..++||++.++.-|+|+|
T Consensus 271 ~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP 349 (442)
T COG1061 271 AAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIP 349 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCC
Confidence 3344444433 45899999999999999999998888 99999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCcccc
Q psy7790 349 EIKHVINTEAKIKKREH 365 (367)
Q Consensus 349 ~v~~VI~yd~P~~~~~Y 365 (367)
+++++|......|...|
T Consensus 350 ~~~~~i~~~~t~S~~~~ 366 (442)
T COG1061 350 DADVLIILRPTGSRRLF 366 (442)
T ss_pred CCcEEEEeCCCCcHHHH
Confidence 99999999987776544
No 90
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.52 E-value=2.4e-14 Score=105.02 Aligned_cols=66 Identities=32% Similarity=0.561 Sum_probs=63.8
Q ss_pred HHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 300 YLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 300 ~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|...|+++..+||++++.+|..+++.|++|...|||||+++++|+|+|++++||+|++|.++..|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~ 67 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEY 67 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHH
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHH
Confidence 678889999999999999999999999999999999999999999999999999999999998876
No 91
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.52 E-value=5.9e-13 Score=126.36 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=124.9
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCE---EEEeCCC--Cc-cCCCCcceEEEEEech-------hhHHHHHHHHH----h
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPI---TINVGRA--GK-IMPSMNVVQEVEYVKQ-------EAKIVYLLECL----Q 278 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~---~i~~~~~--~~-~~~~~~i~~~~~~~~~-------~~k~~~l~~~l----~ 278 (367)
||||+||+..++++..+....+.|.. .+..... +. ......+.|.+..++. +.++.++.+.+ .
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 79999999999999999999887732 3332222 11 1135578898888643 45666665532 2
Q ss_pred --hcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc--ccCCcCCCCEEE
Q psy7790 279 --KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS--KGLDFEEIKHVI 354 (367)
Q Consensus 279 --~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~--rGlDi~~v~~VI 354 (367)
...+++|||++|.-+..+|.++|+..++.++.+|...++.+-.++...|.+|+..+|+.|..+. |...|.+|++||
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE
Confidence 2236799999999999999999999999999999999999999999999999999999999887 899999999999
Q ss_pred EcCCCCCccccC
Q psy7790 355 NTEAKIKKREHG 366 (367)
Q Consensus 355 ~yd~P~~~~~Y~ 366 (367)
.|++|..+..|.
T Consensus 376 FY~~P~~p~fY~ 387 (442)
T PF06862_consen 376 FYGPPENPQFYS 387 (442)
T ss_pred EECCCCChhHHH
Confidence 999999999883
No 92
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.50 E-value=2.6e-13 Score=137.54 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q psy7790 268 AKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 268 ~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rG 344 (367)
.++..|+..|.. .+.++||||+|+..+++++..|...|+++..+||++++.+|..+++.|+.|++.|||||++++||
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 345556665543 45679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCEEEEcCC-----CCCcccc
Q psy7790 345 LDFEEIKHVINTEA-----KIKKREH 365 (367)
Q Consensus 345 lDi~~v~~VI~yd~-----P~~~~~Y 365 (367)
+|+|++++||++|. |.+...|
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~y 535 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSL 535 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHH
Confidence 99999999999985 6777665
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.8e-13 Score=137.89 Aligned_cols=143 Identities=18% Similarity=0.287 Sum_probs=108.7
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcc-eEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNV-VQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKK 291 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~ 291 (367)
.....+|.|...+...+.+.|--+-+. +.+ +. +.... ..-.++.....|...+.+.+.. .+.|+||||+|+
T Consensus 376 ~kl~GmTGTa~~e~~Ef~~iY~l~vv~--IPt-nk--p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si 450 (796)
T PRK12906 376 KKLSGMTGTAKTEEEEFREIYNMEVIT--IPT-NR--PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAI 450 (796)
T ss_pred chhhccCCCCHHHHHHHHHHhCCCEEE--cCC-CC--CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcH
Confidence 356678889876655555444333222 222 11 11111 1224555677888888888853 456899999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCc---CCCC-----EEEEcCCCCCcc
Q psy7790 292 QDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDF---EEIK-----HVINTEAKIKKR 363 (367)
Q Consensus 292 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi---~~v~-----~VI~yd~P~~~~ 363 (367)
..++.++..|...|+++..+||++.+.++..+...++.|. |+|||++|+||+|| ++|. |||++++|.|..
T Consensus 451 ~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~r 528 (796)
T PRK12906 451 ESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRR 528 (796)
T ss_pred HHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHH
Confidence 9999999999999999999999999888888888877776 99999999999999 4999 999999999987
Q ss_pred cc
Q psy7790 364 EH 365 (367)
Q Consensus 364 ~Y 365 (367)
.|
T Consensus 529 i~ 530 (796)
T PRK12906 529 ID 530 (796)
T ss_pred HH
Confidence 65
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=1.6e-13 Score=138.75 Aligned_cols=125 Identities=14% Similarity=0.226 Sum_probs=92.1
Q ss_pred EEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHHH
Q psy7790 218 TLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDV 294 (367)
Q Consensus 218 ~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~ 294 (367)
...+|.|...+...|...|--+-+.|....+.. ... ..-.++.....|...+++.+.. .+.|+||||+|.+.+
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~---R~d-~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMV---RKD-MADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hhcccCCChHHHHHHHHHhCCCEEECCCCCCcc---cee-CCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 334667766555555444433322222222111 111 1123456667888887776653 466899999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 295 DAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 295 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
+.++..|...|+++..+|+.+++.+|..+.+.|+.|. |+|||++|+||+||.
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 9999999999999999999999999999999999998 999999999999986
No 95
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.6e-12 Score=129.02 Aligned_cols=253 Identities=17% Similarity=0.235 Sum_probs=155.5
Q ss_pred HHHHHHHhHhcccccccccccCCccccCccc-------c----cccCCccccCCC--HHHHHHHHhccCeEEe----cCC
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQYNDPIK-------T----SWRAPRCILSLP--DQVHDIIRRNLRILVE----GDD 160 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~~-------~----~~~~~~~i~~~~--~~~~~~~~~~~~i~~~----g~~ 160 (367)
..+++..+.+..=++.+++||+|||-+.|.. . ....|+.+++.+ ..+++.+..+.+-.|| ..+
T Consensus 55 ~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~ 134 (845)
T COG1643 55 RDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES 134 (845)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeec
Confidence 4567777778888899999999999322211 1 123345554322 3334444333222222 222
Q ss_pred CCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch---------HHHHHHHhhccCCceEEeecCCCcHHHHH
Q psy7790 161 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS---------EDVRTIFSFFRGQRQTLLFSATMPKKIQN 231 (367)
Q Consensus 161 ~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~---------~~v~~Il~~l~~~~Q~il~SAT~~~~v~~ 231 (367)
...+-... .+-|.|-|++.+....+.. ..-.-.|+.+-. .-+..++...+.+-.+|++|||+..+ .
T Consensus 135 ~~s~~Tri-k~mTdGiLlrei~~D~~Ls--~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~--r 209 (845)
T COG1643 135 KVSPRTRI-KVMTDGILLREIQNDPLLS--GYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE--R 209 (845)
T ss_pred cCCCCcee-EEeccHHHHHHHhhCcccc--cCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH--H
Confidence 21111111 2558999999887543321 111112221111 33445555566678999999999643 4
Q ss_pred HHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec-hhh-HHHHHHH----HHhhcCCCeEEeeccHHHHHHHHHHHHh--
Q psy7790 232 FARSALVKPITINVGRAGKIMPSMNVVQEVEYVK-QEA-KIVYLLE----CLQKTEPPVLIFAEKKQDVDAIHEYLLL-- 303 (367)
Q Consensus 232 l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~----~l~~~~~~~iVF~~s~~~~~~l~~~L~~-- 303 (367)
|. .++.+.-++.+....- .+.-+|.... .+. -...+.. .+....+.+|||.+-..+.+++.+.|..
T Consensus 210 fs-~~f~~apvi~i~GR~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~ 283 (845)
T COG1643 210 FS-AYFGNAPVIEIEGRTY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAE 283 (845)
T ss_pred HH-HHcCCCCEEEecCCcc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcc
Confidence 43 4566544445443322 1222331111 222 1222222 2333457799999999999999999987
Q ss_pred --CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCC
Q psy7790 304 --KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIK 361 (367)
Q Consensus 304 --~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~ 361 (367)
..+.+.++||.|+.++..++++--..|+.+|++||++|+-+|-|++|++||.-++-+.
T Consensus 284 l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~ 343 (845)
T COG1643 284 LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKE 343 (845)
T ss_pred ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccc
Confidence 4588999999999999999998887787779999999999999999999998776543
No 96
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.38 E-value=2e-11 Score=119.44 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=101.6
Q ss_pred HHHHhhccC-CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHH-HHHHHHHhhcCCC
Q psy7790 206 RTIFSFFRG-QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKI-VYLLECLQKTEPP 283 (367)
Q Consensus 206 ~~Il~~l~~-~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~~l~~~~~~ 283 (367)
+..+..-.. .+-.++||||--|....+....--+-..|+--..++ ..|...++..+...++ ..+.+.+. .+.+
T Consensus 401 R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GR----kpI~T~~i~~~~~~~v~e~i~~ei~-~GrQ 475 (677)
T COG1200 401 RLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGR----KPITTVVIPHERRPEVYERIREEIA-KGRQ 475 (677)
T ss_pred HHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCC----CceEEEEeccccHHHHHHHHHHHHH-cCCE
Confidence 333333344 578999999987777666544333333333322222 2344444443333322 22222222 4667
Q ss_pred eEEeeccHH--------HHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 284 VLIFAEKKQ--------DVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 284 ~iVF~~s~~--------~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
+.+-|+-.+ .++.+++.|... ++++..+||.|+..++.+++++|++|+++|||||.|.+-|+|+|+.++.
T Consensus 476 aY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvM 555 (677)
T COG1200 476 AYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVM 555 (677)
T ss_pred EEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEE
Confidence 888887654 566777888744 6789999999999999999999999999999999999999999999999
Q ss_pred EEcCC
Q psy7790 354 INTEA 358 (367)
Q Consensus 354 I~yd~ 358 (367)
|.++.
T Consensus 556 VIe~A 560 (677)
T COG1200 556 VIENA 560 (677)
T ss_pred EEech
Confidence 98764
No 97
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=2.8e-12 Score=130.54 Aligned_cols=144 Identities=14% Similarity=0.239 Sum_probs=109.8
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
.....+|.|...+...|...|--+-+.|....+. ...+. .-.++....+|...+.+.+.. .+.|+||||+|++
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~---~R~D~-~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve 609 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPI---VRKDM-DDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVE 609 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCCc---ceecC-CCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHH
Confidence 4556688888776666655443333332222211 11121 124566777899999988854 4568999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC---CCCE-----EEEcCCCCCccc
Q psy7790 293 DVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE---EIKH-----VINTEAKIKKRE 364 (367)
Q Consensus 293 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~---~v~~-----VI~yd~P~~~~~ 364 (367)
.++.|+..|...|+++..+|+ .+.+|+..+-.|+.+...|+||||+|+||+||+ +|.. ||+++.|.|...
T Consensus 610 ~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Ri 687 (1025)
T PRK12900 610 VSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRI 687 (1025)
T ss_pred HHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHH
Confidence 999999999999999999997 589999999999999999999999999999999 5654 499999988755
Q ss_pred c
Q psy7790 365 H 365 (367)
Q Consensus 365 Y 365 (367)
|
T Consensus 688 d 688 (1025)
T PRK12900 688 D 688 (1025)
T ss_pred H
Confidence 4
No 98
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.35 E-value=5.4e-12 Score=127.08 Aligned_cols=133 Identities=26% Similarity=0.337 Sum_probs=101.3
Q ss_pred CCceEEeecCCCcHHH--HHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeecc-
Q psy7790 214 GQRQTLLFSATMPKKI--QNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEK- 290 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v--~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s- 290 (367)
+..+.++.|||..+.- ..+.+..|+ +.++.... ...||...+...+...+ +.+++...+..+|||++.
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~~--~LRNIvD~y~~~~~~e~---~~elvk~lG~GgLIfV~~d 345 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGGE--GLRNIVDIYVESESLEK---VVELVKKLGDGGLIFVPID 345 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhC----CccCccch--hhhheeeeeccCccHHH---HHHHHHHhCCCeEEEEEcH
Confidence 4468899999986552 223333333 44554433 45577776665544444 445555556789999999
Q ss_pred --HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc----cccccCCcCC-CCEEEEcCCCC
Q psy7790 291 --KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD----VASKGLDFEE-IKHVINTEAKI 360 (367)
Q Consensus 291 --~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd----~~~rGlDi~~-v~~VI~yd~P~ 360 (367)
++.+++|+++|+.+|+++..+|++ ..+.++.|..|++++||+.. ++-||||.|. |+++|.||+|+
T Consensus 346 ~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 346 YGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred HhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 999999999999999999999995 37889999999999999875 7889999995 78999999995
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.35 E-value=3.1e-11 Score=124.34 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=117.8
Q ss_pred HHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEE
Q psy7790 207 TIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLI 286 (367)
Q Consensus 207 ~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iV 286 (367)
.-++.++.+.-++-+|||--|...+++-..+++-..|.....++ ..|..++...++.--...+++-|. .++++..
T Consensus 734 EkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R----~pV~T~V~~~d~~~ireAI~REl~-RgGQvfY 808 (1139)
T COG1197 734 EKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR----LPVKTFVSEYDDLLIREAILRELL-RGGQVFY 808 (1139)
T ss_pred HHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC----cceEEEEecCChHHHHHHHHHHHh-cCCEEEE
Confidence 34555667788999999999999999999999988777765543 334444444444433444444443 3678888
Q ss_pred eeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcC
Q psy7790 287 FAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357 (367)
Q Consensus 287 F~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd 357 (367)
-+|..++.+.++..|+.. ..+++..||.|+..+-++++..|-+|+++|||||.+.+-|||||+++.+|..+
T Consensus 809 v~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 809 VHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred EecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 899999999999999887 67899999999999999999999999999999999999999999999998754
No 100
>KOG0952|consensus
Probab=99.35 E-value=9.3e-12 Score=125.44 Aligned_cols=257 Identities=16% Similarity=0.186 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhH-hcccccccccccCCcc--ccCcccccccC----------------CccccCCCHHHHHHHHhcc---
Q psy7790 95 LKEEEKILRSVA-ETKALMGVAELAKGIQ--YNDPIKTSWRA----------------PRCILSLPDQVHDIIRRNL--- 152 (367)
Q Consensus 95 ~~~Q~~~i~~i~-~g~d~~~~a~TgsGKT--~~~p~~~~~~~----------------~~~i~~~~~~~~~~~~~~~--- 152 (367)
...|..+.|.+. ...+++++||||+||| +.+.|+..+.. .....++..|.++.+.+++
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 344999999987 5689999999999999 44444433221 1113466667777777764
Q ss_pred CeEEe----cCCCCcc-cccccc-CCCCHHHHHHHHHcCCCCCChhhhhcccccch----------HHHHHHHhhcc---
Q psy7790 153 RILVE----GDDVPPA-CCSFRL-MKLPESLVRALEAKGIKKPTPIQVQGIPAALS----------EDVRTIFSFFR--- 213 (367)
Q Consensus 153 ~i~~~----g~~~~~~-~~~f~~-l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~----------~~v~~Il~~l~--- 213 (367)
++.|. ....... +..-.- +-||... |.+.++.... +..+..+--.+++ +-++.|+.+..
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKw-DvvTRk~~~d-~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~v 269 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKW-DVVTRKSVGD-SALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLV 269 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccce-eeeeeeeccc-hhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHH
Confidence 34332 2111100 000000 2233221 1111111000 0111111011111 44555554443
Q ss_pred ----CCceEEeecCCCcHHHHHHHHHhcCCCE--EEEeCCCCccCCCCcceEEEEEechh---h--------HHHHHHHH
Q psy7790 214 ----GQRQTLLFSATMPKKIQNFARSALVKPI--TINVGRAGKIMPSMNVVQEVEYVKQE---A--------KIVYLLEC 276 (367)
Q Consensus 214 ----~~~Q~il~SAT~~~~v~~l~~~~l~~~~--~i~~~~~~~~~~~~~i~~~~~~~~~~---~--------k~~~l~~~ 276 (367)
...+++.+|||+|. ..+++.-.-.||. ....+.... +..+.+.++-.+.. . ....+.+.
T Consensus 270 essqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yR---PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~ 345 (1230)
T KOG0952|consen 270 ESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYR---PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEF 345 (1230)
T ss_pred HhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeeccccc---ccceeeeEEeeecccchhhhhhHHHHHHHHHHHH
Confidence 34689999999985 4555543333322 222222222 22345555544332 1 12233333
Q ss_pred HhhcCCCeEEeeccHHHHHHHHHHHHhC----C-------------------CeEEEEecCCCHHHHHHHHHHHhcCCCc
Q psy7790 277 LQKTEPPVLIFAEKKQDVDAIHEYLLLK----G-------------------VEAVAIHGGKDQEERTRSVESFRKGQKD 333 (367)
Q Consensus 277 l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~-------------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 333 (367)
++ .+.+++|||.++..+.+.++.|... | .....+|+||...+|.-..+.|+.|-++
T Consensus 346 ~~-~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~ 424 (1230)
T KOG0952|consen 346 LQ-EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK 424 (1230)
T ss_pred HH-cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce
Confidence 32 3678999999999999999999532 1 2367799999999999999999999999
Q ss_pred EEEecccccccCCcCCCCEEEEcCCC
Q psy7790 334 VMVATDVASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 334 vLVaTd~~~rGlDi~~v~~VI~yd~P 359 (367)
||+||..++.|+++| ..+||..+-+
T Consensus 425 vL~cTaTLAwGVNLP-A~aViIKGT~ 449 (1230)
T KOG0952|consen 425 VLCCTATLAWGVNLP-AYAVIIKGTQ 449 (1230)
T ss_pred EEEecceeeeccCCc-ceEEEecCCc
Confidence 999999999999999 5677766654
No 101
>KOG4150|consensus
Probab=99.33 E-value=6.1e-11 Score=112.65 Aligned_cols=262 Identities=13% Similarity=0.106 Sum_probs=156.8
Q ss_pred HHHHHHHHhHhcccccccccccCCcc--ccCcccccc-cCCccccCCCHHHHHHHHhc---cCeEEecCCCCcccccccc
Q psy7790 97 EEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-RAPRCILSLPDQVHDIIRRN---LRILVEGDDVPPACCSFRL 170 (367)
Q Consensus 97 ~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-~~~~~i~~~~~~~~~~~~~~---~~i~~~g~~~~~~~~~f~~ 170 (367)
.|.++|..+.+|+++++...|.+||. |+....... ..+..-..+..+....++.. +.+.+. -++......-+
T Consensus 290 ~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~--~I~~~K~A~V~ 367 (1034)
T KOG4150|consen 290 ISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVE--VIKARKSAYVE 367 (1034)
T ss_pred hhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEE--ehhhhhcceee
Confidence 38999999999999999999999998 443322211 11111111122222222221 111111 11110001101
Q ss_pred --CCCCHHHHHHHHHcC----CCCCChhhhhcccccch----------------------------HHHHHHHhhc----
Q psy7790 171 --MKLPESLVRALEAKG----IKKPTPIQVQGIPAALS----------------------------EDVRTIFSFF---- 212 (367)
Q Consensus 171 --l~~p~~ll~~l~~~g----~~~pt~iQ~~~ip~~l~----------------------------~~v~~Il~~l---- 212 (367)
-+....--+++.+.| |..|..+...++|.-+. ..++.+++.+
T Consensus 368 ~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~ 447 (1034)
T KOG4150|consen 368 MSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFE 447 (1034)
T ss_pred cccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHH
Confidence 022222334444444 33344443333332222 4555555443
Q ss_pred -cCCceEEeecCCCcHHHHHHHHHhcCCCEE-EEeCCCCccCCCCcceEEEEEech---------hhHHHHH---HHHHh
Q psy7790 213 -RGQRQTLLFSATMPKKIQNFARSALVKPIT-INVGRAGKIMPSMNVVQEVEYVKQ---------EAKIVYL---LECLQ 278 (367)
Q Consensus 213 -~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~-i~~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l---~~~l~ 278 (367)
+.+-|++-.|||+...++.....+--+.+. |..+.. +..-.+.++|-++ +.++... +--+.
T Consensus 448 ~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-----Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i 522 (1034)
T KOG4150|consen 448 ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-----PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV 522 (1034)
T ss_pred hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-----CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH
Confidence 357899999999988877655443333333 333221 2233455555432 2333333 33334
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHh----CC----CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLL----KG----VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~----~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
.++-++|-||.+++-|+-+....+. -+ -.+..|.||...++|.++...+-.|+...+|+|++++.||||.++
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 523 QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 5678999999999999876544332 22 256789999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCcccc
Q psy7790 351 KHVINTEAKIKKREH 365 (367)
Q Consensus 351 ~~VI~yd~P~~~~~Y 365 (367)
+.|++.++|.|+.++
T Consensus 603 DAVl~~GFP~S~aNl 617 (1034)
T KOG4150|consen 603 DAVLHLGFPGSIANL 617 (1034)
T ss_pred eeEEEccCchhHHHH
Confidence 999999999998764
No 102
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.32 E-value=3.5e-12 Score=111.24 Aligned_cols=169 Identities=22% Similarity=0.331 Sum_probs=114.1
Q ss_pred cccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-------CccccC
Q psy7790 70 ISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-------PRCILS 139 (367)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-------~~~i~~ 139 (367)
|+.+.+++.+.+.+.+.+ ..+.+. |.++++.+.+|+|++++++||+||| |..|+...+.. ...+..
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~----Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPI----QARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEc
Confidence 567778888888876555 667777 9999999999999999999999999 66776655432 234556
Q ss_pred CCHHHHHHHHhc-------cCe----EEecCCCCccccccc-c----CCCCHHHHHHHHHcCCCCCChhhhhcccc----
Q psy7790 140 LPDQVHDIIRRN-------LRI----LVEGDDVPPACCSFR-L----MKLPESLVRALEAKGIKKPTPIQVQGIPA---- 199 (367)
Q Consensus 140 ~~~~~~~~~~~~-------~~i----~~~g~~~~~~~~~f~-~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---- 199 (367)
++.+.+.++... ..+ ..||.........+. + +++|..+.+.+....+ ....+..-+++.
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~-~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKL-DLSKVKYLVLDEADRM 155 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCC-ChhhCCEEEEeChHHh
Confidence 666555554332 122 234443322222232 1 6799999988875432 111122211221
Q ss_pred ---cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 200 ---ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 200 ---~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
.+...+..+++.++..+|++++|||+++.+..++..++.+++.|
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 12366677788888899999999999999999999999998876
No 103
>KOG0951|consensus
Probab=99.32 E-value=3.2e-11 Score=123.31 Aligned_cols=254 Identities=16% Similarity=0.161 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHhHhc-ccccccccccCCcc--ccCcccc----ccc--------CC-----ccccCCCHHHHHHHHhc--
Q psy7790 94 QLKEEEKILRSVAET-KALMGVAELAKGIQ--YNDPIKT----SWR--------AP-----RCILSLPDQVHDIIRRN-- 151 (367)
Q Consensus 94 ~~~~Q~~~i~~i~~g-~d~~~~a~TgsGKT--~~~p~~~----~~~--------~~-----~~i~~~~~~~~~~~~~~-- 151 (367)
...+|-++-++++.+ .+++.|||||+||| -.+-+++ +.+ |- ....++..+.+..|.++
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 555699999998877 67999999999999 1111111 111 10 11234555666655554
Q ss_pred -cCeEEecC--CCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhh---hccccc--c----hHHHHHHHhhc---
Q psy7790 152 -LRILVEGD--DVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQV---QGIPAA--L----SEDVRTIFSFF--- 212 (367)
Q Consensus 152 -~~i~~~g~--~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~---~~ip~~--l----~~~v~~Il~~l--- 212 (367)
++|.|+-. +.......++. ++||... |.+.+++... +-.|. ..|+.+ + .+-+..|..+.
T Consensus 390 ~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~-DiITRk~gdr-aY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ 467 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLGKEQIEETQVIVTTPEKW-DIITRKSGDR-AYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRR 467 (1674)
T ss_pred ccCcEEEEecccccchhhhhhcceeEEeccchh-hhhhcccCch-hHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHH
Confidence 56666321 11111112222 5666654 2233332221 11111 111111 1 02333333332
Q ss_pred ----cCCceEEeecCCCcHHHHHHHHHhcC-CC-EEEEeCCCCccCCCCcceEEEEEechhh---HHHH----HHH-HHh
Q psy7790 213 ----RGQRQTLLFSATMPKKIQNFARSALV-KP-ITINVGRAGKIMPSMNVVQEVEYVKQEA---KIVY----LLE-CLQ 278 (367)
Q Consensus 213 ----~~~~Q~il~SAT~~~~v~~l~~~~l~-~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~----l~~-~l~ 278 (367)
..+...+.+|||+|.- .+ ...|++ ++ -.+..+...+ +..+.|.++-+.... ++.. ..+ .+.
T Consensus 468 ses~~e~~RlVGLSATLPNy-~D-V~~Fl~v~~~glf~fd~syR---pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~ 542 (1674)
T KOG0951|consen 468 SESTEEGSRLVGLSATLPNY-ED-VASFLRVDPEGLFYFDSSYR---PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE 542 (1674)
T ss_pred hhhcccCceeeeecccCCch-hh-hHHHhccCcccccccCcccC---cCCccceEeccccCCchHHHHHHHHHHHHHHHH
Confidence 2367899999999864 22 223333 32 2233333333 334667777665432 2221 122 222
Q ss_pred hc-CCCeEEeeccHHHHHHHHHHHHhC-------------------------------------CCeEEEEecCCCHHHH
Q psy7790 279 KT-EPPVLIFAEKKQDVDAIHEYLLLK-------------------------------------GVEAVAIHGGKDQEER 320 (367)
Q Consensus 279 ~~-~~~~iVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~R 320 (367)
.. ..++|||+.+++++-..++.++.. .+.++.+|+||+..+|
T Consensus 543 ~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR 622 (1674)
T KOG0951|consen 543 HAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDR 622 (1674)
T ss_pred hCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchH
Confidence 22 357999999999988888777510 2568999999999999
Q ss_pred HHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
.....-|+.|.++|||+|-.+++|++.|.=+++|
T Consensus 623 ~~~EdLf~~g~iqvlvstatlawgvnlpahtVii 656 (1674)
T KOG0951|consen 623 ELVEDLFADGHIQVLVSTATLAWGVNLPAHTVII 656 (1674)
T ss_pred HHHHHHHhcCceeEEEeehhhhhhcCCCcceEEe
Confidence 9999999999999999999999999999766665
No 104
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.30 E-value=7.8e-12 Score=91.97 Aligned_cols=70 Identities=36% Similarity=0.529 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 296 AIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 296 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
.++..|...++.+..+||+++..+|..+++.|..|...|||+|++++.|+|++++++||.+++|.++..|
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~ 71 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASY 71 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHH
Confidence 4678888889999999999999999999999999999999999999999999999999999999998765
No 105
>KOG0947|consensus
Probab=99.29 E-value=4.6e-11 Score=119.33 Aligned_cols=245 Identities=17% Similarity=0.249 Sum_probs=153.2
Q ss_pred HHHHHHHHHhHhcccccccccccCCcc----ccCcccccc----cCCccccCCCHHHHHHHHhcc---CeEEecCCCCcc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQ----YNDPIKTSW----RAPRCILSLPDQVHDIIRRNL---RILVEGDDVPPA 164 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT----~~~p~~~~~----~~~~~i~~~~~~~~~~~~~~~---~i~~~g~~~~~~ 164 (367)
.+|+++|-++..|-.|.+.|.|.+||| |+..+-+.- .-+..|.++++|.+..|+..+ +++.|...+.+.
T Consensus 300 ~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqinPe 379 (1248)
T KOG0947|consen 300 TFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQINPE 379 (1248)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecceeeCCC
Confidence 459999999999999999999999999 655443321 114458899999999999875 466666666544
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHH------------HHhhccCCceEEeecCCCcHHHHHH
Q psy7790 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRT------------IFSFFRGQRQTLLFSATMPKKIQNF 232 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~------------Il~~l~~~~Q~il~SAT~~~~v~~l 232 (367)
..-+ -.--.|++.+.=.|-..-.. +..+.-++|.+ ++=.+|.+.++|++|||+|... .|
T Consensus 380 AsCL---IMTTEILRsMLYrgadliRD-----vE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~-EF 450 (1248)
T KOG0947|consen 380 ASCL---IMTTEILRSMLYRGADLIRD-----VEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTL-EF 450 (1248)
T ss_pred cceE---eehHHHHHHHHhcccchhhc-----cceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChH-HH
Confidence 3332 22334554443222211111 11111123322 3345688899999999998653 34
Q ss_pred HHHhc---CCCEEEEeCCCCccCCCCcceEEEEEec--------------------------------------------
Q psy7790 233 ARSAL---VKPITINVGRAGKIMPSMNVVQEVEYVK-------------------------------------------- 265 (367)
Q Consensus 233 ~~~~l---~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------------------------------------------- 265 (367)
+...- +..+.|.....+. . .+.+++ ++.
T Consensus 451 A~WIGRtK~K~IyViST~kRP--V--PLEh~l-~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rg 525 (1248)
T KOG0947|consen 451 ADWIGRTKQKTIYVISTSKRP--V--PLEHYL-YTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRG 525 (1248)
T ss_pred HHHhhhccCceEEEEecCCCc--c--ceEEEE-Eeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccc
Confidence 43322 1122222111111 0 011110 000
Q ss_pred ---------------------hhhH----HHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCC--------------
Q psy7790 266 ---------------------QEAK----IVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKG-------------- 305 (367)
Q Consensus 266 ---------------------~~~k----~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~-------------- 305 (367)
...+ ...++..|.+.. -|+||||=|++.|++-+.+|...+
T Consensus 526 s~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl 605 (1248)
T KOG0947|consen 526 SQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFL 605 (1248)
T ss_pred ccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHH
Confidence 0001 223344444332 479999999999999999995321
Q ss_pred -------------------------CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 306 -------------------------VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 306 -------------------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
--++++|||+-+--+.-+.--|..|-++||.||..+++|++.|.-.+|+
T Consensus 606 ~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF 679 (1248)
T KOG0947|consen 606 SKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF 679 (1248)
T ss_pred HHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe
Confidence 1377899999999999999999999999999999999999999655554
No 106
>KOG0922|consensus
Probab=99.26 E-value=2.4e-10 Score=111.06 Aligned_cols=247 Identities=15% Similarity=0.216 Sum_probs=150.4
Q ss_pred HHHHHHHhHhcccccccccccCCccccCcc---cccc--------cCCccccCCCHHHHHHHHhccCeEEecCCCCcccc
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQYNDPI---KTSW--------RAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACC 166 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~---~~~~--------~~~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 166 (367)
-.+++..+.+..-++++++||||||-+.|- ...| +.|+.+++++ +++.+...++..+| .++.-.++
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavs--lA~RVAeE~~~~lG-~~VGY~IR 132 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVS--LAKRVAEEMGCQLG-EEVGYTIR 132 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHH--HHHHHHHHhCCCcC-ceeeeEEE
Confidence 456788888888899999999999933331 1123 3456666554 34444444433332 12222221
Q ss_pred cccc---------CCCCHHHHHHHHHcCCCCCChhhhhcccccch-----HHHHHHHhhc---cCCceEEeecCCCcHHH
Q psy7790 167 SFRL---------MKLPESLVRALEAKGIKKPTPIQVQGIPAALS-----EDVRTIFSFF---RGQRQTLLFSATMPKKI 229 (367)
Q Consensus 167 ~f~~---------l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~-----~~v~~Il~~l---~~~~Q~il~SAT~~~~v 229 (367)
|++ .-|.|-|++.+...-.. +..-.-+++.+-. +-+.-+++.+ +.+-.+|++|||+..+
T Consensus 133 -Fed~ts~~TrikymTDG~LLRE~l~Dp~L--skYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~- 208 (674)
T KOG0922|consen 133 -FEDSTSKDTRIKYMTDGMLLREILKDPLL--SKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAE- 208 (674)
T ss_pred -ecccCCCceeEEEecchHHHHHHhcCCcc--ccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHH-
Confidence 111 45889888887532211 1111111222111 3334445444 2346899999999643
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHH----HHHHHhh-cCCCeEEeeccHHHHHHHHHHHHhC
Q psy7790 230 QNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY----LLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLK 304 (367)
Q Consensus 230 ~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~----l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~~ 304 (367)
. ...|+.+..++.+....- .+...|..-+..+-+.. +.++-.. .++-+|||-...++++.+.+.|.+.
T Consensus 209 -k-fS~yF~~a~i~~i~GR~f-----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~ 281 (674)
T KOG0922|consen 209 -K-FSEYFNNAPILTIPGRTF-----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRER 281 (674)
T ss_pred -H-HHHHhcCCceEeecCCCC-----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3 345666644444432211 23333333233332222 2222222 2345999999999999999999655
Q ss_pred ----C--C--eEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC
Q psy7790 305 ----G--V--EAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 305 ----~--~--~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
+ + -+.++||.|+.++..+++..--.|..+|+++|++++--|-|++|.+||.-|+
T Consensus 282 ~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~ 343 (674)
T KOG0922|consen 282 AKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGF 343 (674)
T ss_pred hhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCc
Confidence 1 1 2578999999999999999888899999999999999999999999998775
No 107
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.24 E-value=1e-10 Score=110.67 Aligned_cols=168 Identities=23% Similarity=0.296 Sum_probs=118.9
Q ss_pred CHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCC
Q psy7790 174 PESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMP 253 (367)
Q Consensus 174 p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~ 253 (367)
...-...|...||..|+..-.+ |.-|. ..-...+|++++|||-.+.-..... +.+.-.+-++..
T Consensus 354 DrsRK~~LVeyGFRLPSAlDNR--PL~fe-------Ef~~~~~q~i~VSATPg~~E~e~s~----~~vveQiIRPTG--- 417 (663)
T COG0556 354 DRSRKQTLVEYGFRLPSALDNR--PLKFE-------EFEAKIPQTIYVSATPGDYELEQSG----GNVVEQIIRPTG--- 417 (663)
T ss_pred cHHHHHHHHHhcCcCcccccCC--CCCHH-------HHHHhcCCEEEEECCCChHHHHhcc----CceeEEeecCCC---
Confidence 3334556777888887655433 22222 1112348999999996554332221 122222222211
Q ss_pred CCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 254 SMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 254 ~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
-+.-.+..-+....+..|+.-++. .+.++||-+-|+++++.|.+||...|+++..+|+++..-+|.++++++|.|
T Consensus 418 --LlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G 495 (663)
T COG0556 418 --LLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG 495 (663)
T ss_pred --CCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC
Confidence 111122233344455666665554 357899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCcCCCCEEEEcCCC
Q psy7790 331 QKDVMVATDVASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 331 ~~~vLVaTd~~~rGlDi~~v~~VI~yd~P 359 (367)
.++|||.-+++--|||+|.|.+|..+|.-
T Consensus 496 ~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 496 EFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred CccEEEeehhhhccCCCcceeEEEEeecC
Confidence 99999999999999999999999998864
No 108
>PTZ00110 helicase; Provisional
Probab=99.14 E-value=6.5e-10 Score=111.01 Aligned_cols=182 Identities=24% Similarity=0.395 Sum_probs=135.9
Q ss_pred ccCCccccCCCHHHHHHHHhccCeEE-ecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHH
Q psy7790 131 WRAPRCILSLPDQVHDIIRRNLRILV-EGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIF 209 (367)
Q Consensus 131 ~~~~~~i~~~~~~~~~~~~~~~~i~~-~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il 209 (367)
+.+...+..++.+.+..+++...+.+ .|.++|.++.+|.++++|..+++.|.+.||..||++|.++||.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~------- 166 (545)
T PTZ00110 94 YKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALS------- 166 (545)
T ss_pred ccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------
Confidence 34456678889999999998887775 7889999999999999999999999999999999999999999986
Q ss_pred hhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeec
Q psy7790 210 SFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAE 289 (367)
Q Consensus 210 ~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~ 289 (367)
.+-+|+.+.|=+.+...++-..+.. +... . .. -...++.+||.|+
T Consensus 167 -----G~dvI~~ApTGSGKTlaylLP~l~~-----i~~~-~---~~---------------------~~~~gp~~LIL~P 211 (545)
T PTZ00110 167 -----GRDMIGIAETGSGKTLAFLLPAIVH-----INAQ-P---LL---------------------RYGDGPIVLVLAP 211 (545)
T ss_pred -----CCCEEEEeCCCChHHHHHHHHHHHH-----HHhc-c---cc---------------------cCCCCcEEEEECC
Confidence 6778888999888766543322110 0000 0 00 0011345899999
Q ss_pred cHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----ccccc-CCcCCCCEEEEcCC
Q psy7790 290 KKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VASKG-LDFEEIKHVINTEA 358 (367)
Q Consensus 290 s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~VI~yd~ 358 (367)
|++.|..+...+... ++.+..++|+.+....... ++. ..+|||+|+ .+.++ +++..+++||..++
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEA 286 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---LRR-GVEILIACPGRLIDFLESNVTNLRRVTYLVLDEA 286 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---HHc-CCCEEEECHHHHHHHHHcCCCChhhCcEEEeehH
Confidence 999999998888664 5788899999886654433 333 479999997 34444 67888998887654
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.14 E-value=7e-10 Score=114.28 Aligned_cols=144 Identities=21% Similarity=0.206 Sum_probs=98.2
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccC-CCCcceEEEEEechhhHH-HHHHHHH---hhcCCCeEEee
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIM-PSMNVVQEVEYVKQEAKI-VYLLECL---QKTEPPVLIFA 288 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~-~~~~i~~~~~~~~~~~k~-~~l~~~l---~~~~~~~iVF~ 288 (367)
.+..+|++|||+|+.....+...+.+...+......... ....+.+.. .++-.... ..+...+ .+.+.+++|-|
T Consensus 369 ~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~ 447 (733)
T COG1203 369 AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKE-RVDVEDGPQEELIELISEEVKEGKKVLVIV 447 (733)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccccc-chhhhhhhhHhhhhcchhhhccCCcEEEEE
Confidence 467899999999999999888877664444332110000 000111110 01111110 1122222 22356899999
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHh----cCCCcEEEecccccccCCcCCCCEEEEcCCC
Q psy7790 289 EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFR----KGQKDVMVATDVASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 289 ~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~----~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P 359 (367)
||+..|.+++..|+..+.++..+||.+...+|.+.++.++ .+...|+|||.+.+-|+|+. .+++|=-=.|
T Consensus 448 NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aP 521 (733)
T COG1203 448 NTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAP 521 (733)
T ss_pred ecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCC
Confidence 9999999999999999878999999999999999888654 56788999999999999995 8887743333
No 110
>KOG2340|consensus
Probab=99.13 E-value=1.1e-10 Score=110.24 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=129.1
Q ss_pred HHHHHHHhhccCC------------------------ceEEeecCCCcHHHHHHHHHhcCCCEE-EEe---CCCCccC-C
Q psy7790 203 EDVRTIFSFFRGQ------------------------RQTLLFSATMPKKIQNFARSALVKPIT-INV---GRAGKIM-P 253 (367)
Q Consensus 203 ~~v~~Il~~l~~~------------------------~Q~il~SAT~~~~v~~l~~~~l~~~~~-i~~---~~~~~~~-~ 253 (367)
+++..|+.+++.. |||++||+-..+.+..+...++.|..- |.. ...+.+. .
T Consensus 433 Ehl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v 512 (698)
T KOG2340|consen 433 EHLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNV 512 (698)
T ss_pred HHHHHHHHHhhcCcccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhc
Confidence 8888999888632 799999999999999999998877332 111 1111100 1
Q ss_pred CCcceEEEEEe-------chhhHHHHHHHHHhhc-----CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH
Q psy7790 254 SMNVVQEVEYV-------KQEAKIVYLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321 (367)
Q Consensus 254 ~~~i~~~~~~~-------~~~~k~~~l~~~l~~~-----~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 321 (367)
...+.|.+... ..+.++.++...+... ...+|||+++.-+..++.++++..++++..+|...++..-.
T Consensus 513 ~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vs 592 (698)
T KOG2340|consen 513 GIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVS 592 (698)
T ss_pred cchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhh
Confidence 11334443332 2367888877765432 23479999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEeccccc--ccCCcCCCCEEEEcCCCCCccccC
Q psy7790 322 RSVESFRKGQKDVMVATDVAS--KGLDFEEIKHVINTEAKIKKREHG 366 (367)
Q Consensus 322 ~~~~~F~~g~~~vLVaTd~~~--rGlDi~~v~~VI~yd~P~~~~~Y~ 366 (367)
++.+-|..|+..||+.|..+. |..+|.+|+.||.|.+|.+|.+|-
T Consensus 593 RAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYs 639 (698)
T KOG2340|consen 593 RARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYS 639 (698)
T ss_pred HHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHH
Confidence 999999999999999999888 899999999999999999999983
No 111
>KOG0924|consensus
Probab=99.12 E-value=1.5e-09 Score=105.38 Aligned_cols=248 Identities=18% Similarity=0.195 Sum_probs=143.3
Q ss_pred HHHHHHhHhcccccccccccCCccccCc-----------ccccccCCccccCCCHHHHHHHHhccCeEEec--------C
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQYNDP-----------IKTSWRAPRCILSLPDQVHDIIRRNLRILVEG--------D 159 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT~~~p-----------~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~g--------~ 159 (367)
.+++..|.+..-++++++||||||-++| -......|+.+++++ ++..+...++...|. .
T Consensus 362 ~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiS--VAkrVa~EM~~~lG~~VGYsIRFE 439 (1042)
T KOG0924|consen 362 DQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAIS--VAKRVAEEMGVTLGDTVGYSIRFE 439 (1042)
T ss_pred HHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHH--HHHHHHHHhCCccccccceEEEee
Confidence 4455566667778899999999992222 111234566666655 344555544333321 1
Q ss_pred CCCccccccccCCCCHHHHHHH-HHcCCCCCChhhhhccccc----ch-HHHHHHHhhc---cCCceEEeecCCCcHHHH
Q psy7790 160 DVPPACCSFRLMKLPESLVRAL-EAKGIKKPTPIQVQGIPAA----LS-EDVRTIFSFF---RGQRQTLLFSATMPKKIQ 230 (367)
Q Consensus 160 ~~~~~~~~f~~l~~p~~ll~~l-~~~g~~~pt~iQ~~~ip~~----l~-~~v~~Il~~l---~~~~Q~il~SAT~~~~v~ 230 (367)
++..+-..+ ..-|.|-|++.. ....+..-+-| .++.+ ++ +-+.-|++.. +.+-.+|+.||||. .+
T Consensus 440 dvT~~~T~I-kymTDGiLLrEsL~d~~L~kYSvi---ImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~--a~ 513 (1042)
T KOG0924|consen 440 DVTSEDTKI-KYMTDGILLRESLKDRDLDKYSVI---IMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD--AQ 513 (1042)
T ss_pred ecCCCceeE-EEeccchHHHHHhhhhhhhheeEE---EechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc--HH
Confidence 221111111 133666666543 22222211100 00110 11 2223334333 34678999999994 45
Q ss_pred HHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHH-Hh----hcCCCeEEeeccHHHHHHHHHHHHh--
Q psy7790 231 NFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLEC-LQ----KTEPPVLIFAEKKQDVDAIHEYLLL-- 303 (367)
Q Consensus 231 ~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~-l~----~~~~~~iVF~~s~~~~~~l~~~L~~-- 303 (367)
+|+..|-+-|.+-..++.. .+.-.+...+-++-+.+.++- +. ..++-+|||..-.++++-....+..
T Consensus 514 kf~nfFgn~p~f~IpGRTy------PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l 587 (1042)
T KOG0924|consen 514 KFSNFFGNCPQFTIPGRTY------PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKL 587 (1042)
T ss_pred HHHHHhCCCceeeecCCcc------ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHH
Confidence 6665444344443333221 122233333444444433332 22 1235699999888776655555532
Q ss_pred --C------CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCC
Q psy7790 304 --K------GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 304 --~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~ 360 (367)
. ++.+.++++.|++.-..+++..--.|..+|+|||++|+..|-||+|.+||.-++-+
T Consensus 588 ~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 588 EQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred HhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 1 68899999999999999999888889999999999999999999999999987643
No 112
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.10 E-value=2.2e-09 Score=110.71 Aligned_cols=249 Identities=15% Similarity=0.179 Sum_probs=148.8
Q ss_pred HHHHHHHHHhHhcccccccccccCCcc----ccCccccc----ccCCccccCCCHHHHHHHHhcc-------CeEEecCC
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQ----YNDPIKTS----WRAPRCILSLPDQVHDIIRRNL-------RILVEGDD 160 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT----~~~p~~~~----~~~~~~i~~~~~~~~~~~~~~~-------~i~~~g~~ 160 (367)
++|++++-++.+|..|+++|+||+||| |+.-+... -.-+..|.|+++|.+..+...+ ++..|...
T Consensus 122 ~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~ 201 (1041)
T COG4581 122 PFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVS 201 (1041)
T ss_pred HHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceeccee
Confidence 459999999999999999999999999 43222111 1113347788888887776643 55666655
Q ss_pred CCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch-----------HHHHHHHhhccCCceEEeecCCCcHHH
Q psy7790 161 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-----------EDVRTIFSFFRGQRQTLLFSATMPKKI 229 (367)
Q Consensus 161 ~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~-----------~~v~~Il~~l~~~~Q~il~SAT~~~~v 229 (367)
+.+...-.- | |- .+++.+.-.| ...+...--.+|+ --=+.++-.+|...|++++|||+|..
T Consensus 202 IN~~A~clv-M-TT-EILRnMlyrg----~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~- 273 (1041)
T COG4581 202 INPDAPCLV-M-TT-EILRNMLYRG----SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA- 273 (1041)
T ss_pred eCCCCceEE-e-eH-HHHHHHhccC----cccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH-
Confidence 543322211 1 22 4444433222 1222222122332 11144556678888999999999764
Q ss_pred HHHHHH---hcCCCEEEEeCCCCccCCCCcceEEEE-------EechhhH------------------------------
Q psy7790 230 QNFARS---ALVKPITINVGRAGKIMPSMNVVQEVE-------YVKQEAK------------------------------ 269 (367)
Q Consensus 230 ~~l~~~---~l~~~~~i~~~~~~~~~~~~~i~~~~~-------~~~~~~k------------------------------ 269 (367)
..|+.. .-..|..+....... .+ +.+++. .+++..+
T Consensus 274 ~EF~~Wi~~~~~~~~~vv~t~~Rp---vP-L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 349 (1041)
T COG4581 274 EEFAEWIQRVHSQPIHVVSTEHRP---VP-LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGR 349 (1041)
T ss_pred HHHHHHHHhccCCCeEEEeecCCC---CC-eEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccc
Confidence 233322 123344444433322 11 111111 1111110
Q ss_pred -----------------HHHHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHhC---------------------------
Q psy7790 270 -----------------IVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLK--------------------------- 304 (367)
Q Consensus 270 -----------------~~~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~~--------------------------- 304 (367)
...++..+.. ..-++|+||=|+..|+..+..+...
T Consensus 350 ~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed 429 (1041)
T COG4581 350 YARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEED 429 (1041)
T ss_pred ccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhh
Confidence 0112222222 2347999999999999888877411
Q ss_pred -CC-------------eEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcC
Q psy7790 305 -GV-------------EAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357 (367)
Q Consensus 305 -~~-------------~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd 357 (367)
++ -++++|+||=+..|..+..-|..|-++||.||.+++.|++.| ++.|+.+.
T Consensus 430 ~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~~ 495 (1041)
T COG4581 430 RELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFTS 495 (1041)
T ss_pred hcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeeee
Confidence 12 145799999999999999999999999999999999999999 45555443
No 113
>KOG0948|consensus
Probab=99.09 E-value=8.8e-10 Score=107.91 Aligned_cols=248 Identities=14% Similarity=0.180 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHhHhcccccccccccCCcc----ccCccc----ccccCCccccCCCHHHHHHHHhc---cCeEEecCCCC
Q psy7790 94 QLKEEEKILRSVAETKALMGVAELAKGIQ----YNDPIK----TSWRAPRCILSLPDQVHDIIRRN---LRILVEGDDVP 162 (367)
Q Consensus 94 ~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT----~~~p~~----~~~~~~~~i~~~~~~~~~~~~~~---~~i~~~g~~~~ 162 (367)
+..+|..+|..+-.+..+++.|-|..||| |+..+- +...-+..|.++++|.+..+... .++..|...+.
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTIn 209 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTIN 209 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeC
Confidence 45679999999999999999999999999 543321 11112445789999888888765 46777776665
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHh------------hccCCceEEeecCCCcHHHH
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFS------------FFRGQRQTLLFSATMPKKIQ 230 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~------------~l~~~~Q~il~SAT~~~~v~ 230 (367)
|....+ -.--.|++.+.=.| +.+-..+--.+| ++|.+.-. .+|.+...+++|||+|.. .
T Consensus 210 P~ASCL---VMTTEILRsMLYRG----SEvmrEVaWVIF-DEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA-~ 280 (1041)
T KOG0948|consen 210 PDASCL---VMTTEILRSMLYRG----SEVMREVAWVIF-DEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNA-R 280 (1041)
T ss_pred CCCcee---eeHHHHHHHHHhcc----chHhheeeeEEe-eeehhccccccceeeeeeEEeccccceEEEEeccCCCH-H
Confidence 554432 23344555443223 222222222233 34443332 246778899999999875 3
Q ss_pred HHHHH---hcCCCEEEEeCCCCccCCCCcceEE---------EEEech-----hhHHHHHHHHHh---------------
Q psy7790 231 NFARS---ALVKPITINVGRAGKIMPSMNVVQE---------VEYVKQ-----EAKIVYLLECLQ--------------- 278 (367)
Q Consensus 231 ~l~~~---~l~~~~~i~~~~~~~~~~~~~i~~~---------~~~~~~-----~~k~~~l~~~l~--------------- 278 (367)
.|+.. .-+.|..|.-...+. ++ +.|+ +..++. ++.+...+..|.
T Consensus 281 qFAeWI~~ihkQPcHVVYTdyRP--TP--LQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~ 356 (1041)
T KOG0948|consen 281 QFAEWICHIHKQPCHVVYTDYRP--TP--LQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKG 356 (1041)
T ss_pred HHHHHHHHHhcCCceEEeecCCC--Cc--ceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccccc
Confidence 34444 334566554433322 11 1111 222222 122222222221
Q ss_pred ------------------------hcCCCeEEeeccHHHHHHHHHHHHhCC-----------------------------
Q psy7790 279 ------------------------KTEPPVLIFAEKKQDVDAIHEYLLLKG----------------------------- 305 (367)
Q Consensus 279 ------------------------~~~~~~iVF~~s~~~~~~l~~~L~~~~----------------------------- 305 (367)
+...|+|||+=|+++|+.++-.+....
T Consensus 357 ~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LP 436 (1041)
T KOG0948|consen 357 RKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELP 436 (1041)
T ss_pred ccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccch
Confidence 122479999999999999998884321
Q ss_pred ----------CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 306 ----------VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 306 ----------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
-.++.+|||+-+--++-+.=-|..|-++||.||..++.||+.|.-++|.
T Consensus 437 qie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF 495 (1041)
T KOG0948|consen 437 QIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF 495 (1041)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE
Confidence 1267899999988888888889999999999999999999999665553
No 114
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.06 E-value=2e-09 Score=107.09 Aligned_cols=178 Identities=25% Similarity=0.402 Sum_probs=129.4
Q ss_pred ccCCCHHHHHHHHhccCeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCc
Q psy7790 137 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQR 216 (367)
Q Consensus 137 i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~ 216 (367)
...++.+.+..+++...+.+.|.++|.++.+|..+++|..+++.|.+.||..|||+|.++||.++. ++
T Consensus 92 ~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~------------g~ 159 (518)
T PLN00206 92 TSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALS------------GR 159 (518)
T ss_pred hccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc------------CC
Confidence 345889999999999999999999999999999999999999999999999999999999999886 56
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDA 296 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~ 296 (367)
-+++.+-|-+.+...+.-..+..-..... ... -...++.+||.++|++-|..
T Consensus 160 dviv~ApTGSGKTlayllPil~~l~~~~~--~~~--------------------------~~~~~~~aLIL~PTreLa~Q 211 (518)
T PLN00206 160 SLLVSADTGSGKTASFLVPIISRCCTIRS--GHP--------------------------SEQRNPLAMVLTPTRELCVQ 211 (518)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHhhcc--ccc--------------------------cccCCceEEEEeCCHHHHHH
Confidence 67888888776654433222110000000 000 00124569999999999988
Q ss_pred HHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----ccc-ccCCcCCCCEEEEcCC
Q psy7790 297 IHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VAS-KGLDFEEIKHVINTEA 358 (367)
Q Consensus 297 l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~-rGlDi~~v~~VI~yd~ 358 (367)
+...++.. ++.+..+.||.+..... ..++. ..+|+|+|+ .+. +++++.++.+||.-++
T Consensus 212 i~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEa 279 (518)
T PLN00206 212 VEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEV 279 (518)
T ss_pred HHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCccchheeEEEeecH
Confidence 87776543 56778888886655443 23333 479999996 333 4688889999887654
No 115
>KOG0923|consensus
Probab=99.06 E-value=3.9e-09 Score=102.24 Aligned_cols=248 Identities=19% Similarity=0.207 Sum_probs=152.2
Q ss_pred HHHHHHhHhcccccccccccCCccccCccc------------ccccCCccccCCCHHHHHHHHhccCeEEecCCCCccc-
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQYNDPIK------------TSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPAC- 165 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT~~~p~~------------~~~~~~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~- 165 (367)
.+++.+|.+..=++++++||||||-++|-. .....|+.+++|+ ++..+.+.+++..|. .+.-.|
T Consensus 271 dell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmS--VAaRVA~EMgvkLG~-eVGYsIR 347 (902)
T KOG0923|consen 271 DELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMS--VAARVAEEMGVKLGH-EVGYSIR 347 (902)
T ss_pred HHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHH--HHHHHHHHhCccccc-ccceEEE
Confidence 456677777788899999999999555421 1245577788776 344555555444321 111111
Q ss_pred -------cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch-----HHHHHHH---hhccCCceEEeecCCCcHHHH
Q psy7790 166 -------CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-----EDVRTIF---SFFRGQRQTLLFSATMPKKIQ 230 (367)
Q Consensus 166 -------~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~-----~~v~~Il---~~l~~~~Q~il~SAT~~~~v~ 230 (367)
++.-..-|.|-|++.+...--.. .--.-+++.+-. +-+-.|+ ..++++-..++.|||+..+
T Consensus 348 FEdcTSekTvlKYMTDGmLlREfL~epdLa--sYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAe-- 423 (902)
T KOG0923|consen 348 FEDCTSEKTVLKYMTDGMLLREFLSEPDLA--SYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAE-- 423 (902)
T ss_pred eccccCcceeeeeecchhHHHHHhcccccc--ceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHH--
Confidence 11112457888887764221000 000111111111 1112222 2345678899999999643
Q ss_pred HHHHHhcCC-CEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh-----cCCCeEEeeccHHHHHHHHHHHHhC
Q psy7790 231 NFARSALVK-PITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK-----TEPPVLIFAEKKQDVDAIHEYLLLK 304 (367)
Q Consensus 231 ~l~~~~l~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-----~~~~~iVF~~s~~~~~~l~~~L~~~ 304 (367)
+| ..|+.+ |++...++.. .+.-+|...++.+-+...+..+.+ ..+-+|||..-.+..+...+.|...
T Consensus 424 kF-S~fFDdapIF~iPGRRy------PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~ 496 (902)
T KOG0923|consen 424 KF-SAFFDDAPIFRIPGRRY------PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKER 496 (902)
T ss_pred HH-HHhccCCcEEeccCccc------ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHH
Confidence 33 345555 4444333322 233344444554444433332222 2356999999988888777777432
Q ss_pred ---------CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCC
Q psy7790 305 ---------GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 305 ---------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~ 360 (367)
.+-++++|+.++.....++++---.|-.+|++||++|+..|-|++|.+||.=++-+
T Consensus 497 ~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 497 CRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred HHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 46789999999999999999999999999999999999999999999999877654
No 116
>KOG0339|consensus
Probab=99.04 E-value=2.1e-09 Score=101.13 Aligned_cols=178 Identities=25% Similarity=0.343 Sum_probs=135.2
Q ss_pred CccccCCCHHHHHHHHhccCeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhcc
Q psy7790 134 PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR 213 (367)
Q Consensus 134 ~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~ 213 (367)
+..|..++.+..-.++..+.+.+.|...+.++.+|+++|+...|+..+.+..|..|||||.+++|..+.
T Consensus 191 ~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptals----------- 259 (731)
T KOG0339|consen 191 HESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALS----------- 259 (731)
T ss_pred hhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccc-----------
Confidence 445788888888888888999999999999999999999999999999999999999999999999987
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCC-eEEeeccHH
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPP-VLIFAEKKQ 292 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~iVF~~s~~ 292 (367)
.|-++...-|-+.....++...+. .+... .-|..-.+| .+|.|+|++
T Consensus 260 -grdvigIAktgSgktaAfi~pm~~-----himdq--------------------------~eL~~g~gPi~vilvPTre 307 (731)
T KOG0339|consen 260 -GRDVIGIAKTGSGKTAAFIWPMIV-----HIMDQ--------------------------PELKPGEGPIGVILVPTRE 307 (731)
T ss_pred -cccchheeeccCcchhHHHHHHHH-----Hhcch--------------------------hhhcCCCCCeEEEEeccHH
Confidence 455555555555555544433211 11000 011212334 788899999
Q ss_pred HHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc------cccccCCcCCCCEEEEcCC
Q psy7790 293 DVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD------VASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 293 ~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd------~~~rGlDi~~v~~VI~yd~ 358 (367)
.|..|+...+.. |++++++|||++.-+....++ -..-++|||+ +--.|.|+..|.+.|.-.+
T Consensus 308 la~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa 379 (731)
T KOG0339|consen 308 LASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA 379 (731)
T ss_pred HHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeEEEEech
Confidence 999988777554 899999999999888877664 3478999999 3336788888888776543
No 117
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=1.4e-09 Score=110.89 Aligned_cols=97 Identities=21% Similarity=0.287 Sum_probs=72.4
Q ss_pred EEechhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC-CcEEEe
Q psy7790 262 EYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ-KDVMVA 337 (367)
Q Consensus 262 ~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLVa 337 (367)
++.....|...+++.+.. .+.|+||-|.|.+..+.++..|...|++...+++.-...+- .++. ..|+ ..|.||
T Consensus 546 iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea-~iia--~AG~~g~VTIA 622 (970)
T PRK12899 546 FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEA-EIIA--GAGKLGAVTVA 622 (970)
T ss_pred EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHH-HHHH--hcCCCCcEEEe
Confidence 456667888777776543 45689999999999999999999999999999987332222 2332 3454 569999
Q ss_pred cccccccCCcCC---CC-----EEEEcCCCCC
Q psy7790 338 TDVASKGLDFEE---IK-----HVINTEAKIK 361 (367)
Q Consensus 338 Td~~~rGlDi~~---v~-----~VI~yd~P~~ 361 (367)
|+.|+||-||.- |. |||.-..|.|
T Consensus 623 TNmAGRGTDIkl~~~v~~~GGLhVIgTer~es 654 (970)
T PRK12899 623 TNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQS 654 (970)
T ss_pred eccccCCcccccCchHHhcCCcEEEeeccCch
Confidence 999999999852 22 7777777655
No 118
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.02 E-value=1.1e-09 Score=114.44 Aligned_cols=99 Identities=23% Similarity=0.427 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHH---hhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC---CCcEEEecc
Q psy7790 266 QEAKIVYLLECL---QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG---QKDVMVATD 339 (367)
Q Consensus 266 ~~~k~~~l~~~l---~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~vLVaTd 339 (367)
...|+..|.++| ...+.++||||......+.|..+|...|+.++.+||+++..+|..+++.|... ..-+|++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 345665555554 44567899999999999999999999999999999999999999999999763 335789999
Q ss_pred cccccCCcCCCCEEEEcCCCCCccc
Q psy7790 340 VASKGLDFEEIKHVINTEAKIKKRE 364 (367)
Q Consensus 340 ~~~rGlDi~~v~~VI~yd~P~~~~~ 364 (367)
+++.|||+..+++||+||+|+||..
T Consensus 549 AGGlGINLt~Ad~VIiyD~dWNP~~ 573 (1033)
T PLN03142 549 AGGLGINLATADIVILYDSDWNPQV 573 (1033)
T ss_pred ccccCCchhhCCEEEEeCCCCChHH
Confidence 9999999999999999999999864
No 119
>KOG0334|consensus
Probab=98.99 E-value=2.7e-09 Score=108.44 Aligned_cols=168 Identities=26% Similarity=0.427 Sum_probs=128.1
Q ss_pred Cccccccc-CCccccCCCHHHHHHHHhccC-eEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch
Q psy7790 125 DPIKTSWR-APRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202 (367)
Q Consensus 125 ~p~~~~~~-~~~~i~~~~~~~~~~~~~~~~-i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~ 202 (367)
.|+...|. .++.|..|+...++.++..+. +.+-|.++|.|+.+|.+.|+...+++.+++.||..||+||.++||.+++
T Consensus 322 epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~Ims 401 (997)
T KOG0334|consen 322 EPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMS 401 (997)
T ss_pred hhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhcc
Confidence 45554553 356688888899999998765 9999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCC
Q psy7790 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEP 282 (367)
Q Consensus 203 ~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~ 282 (367)
.+-+|..+-|-+.....+.-..++. +... .+ +....+
T Consensus 402 ------------GrdvIgvakTgSGKT~af~LPmirh---i~dQ------r~----------------------~~~gdG 438 (997)
T KOG0334|consen 402 ------------GRDVIGVAKTGSGKTLAFLLPMIRH---IKDQ------RP----------------------LEEGDG 438 (997)
T ss_pred ------------CcceEEeeccCCccchhhhcchhhh---hhcC------CC----------------------hhhCCC
Confidence 7888888888766544432221100 0000 00 011123
Q ss_pred C-eEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 283 P-VLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 283 ~-~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
| +||.|+|++.+..|.+.++. .++.+++.+|+....+. +...+.| ..|+|||.
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG-AEIVVCTP 496 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC-CceEEecc
Confidence 4 89999999999999888754 48999999999876554 5666888 89999998
No 120
>KOG0950|consensus
Probab=98.93 E-value=5.1e-09 Score=105.42 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=65.5
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC--------------------------------------CCeEEEEecCCCHHHHHH
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK--------------------------------------GVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~--------------------------------------~~~~~~lhg~~~~~~R~~ 322 (367)
+.++||||++++.|+.++..+... -+.+..+|+|++.++|..
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 446999999999999988666211 135788999999999999
Q ss_pred HHHHHhcCCCcEEEecccccccCCcCCCCEEEEc
Q psy7790 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINT 356 (367)
Q Consensus 323 ~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~y 356 (367)
+...|+.|.+.|++||+.++-|++.|..+++|-.
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira 573 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA 573 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeC
Confidence 9999999999999999999999999988888753
No 121
>KOG0341|consensus
Probab=98.91 E-value=5.1e-10 Score=101.99 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=90.7
Q ss_pred cccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccc------------
Q psy7790 65 GRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKT------------ 129 (367)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~------------ 129 (367)
.+..+|.++.....+++.+.+++ .+||++ |-+-||.+++|||+++.|-|||||| |.+|+..
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpI----QvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~ 242 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPI----QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA 242 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCce----eecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc
Confidence 35678999999999999997777 899999 9999999999999999999999999 6666543
Q ss_pred -cccCCccccCCCHHHHHHHHh-----------------ccCeEEecCCCCcccccccc-----CCCCHHHHHHHHHc
Q psy7790 130 -SWRAPRCILSLPDQVHDIIRR-----------------NLRILVEGDDVPPACCSFRL-----MKLPESLVRALEAK 184 (367)
Q Consensus 130 -~~~~~~~i~~~~~~~~~~~~~-----------------~~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~ 184 (367)
.--|-.+|..++++++.+... +..+.+||.++..++...+. +++|+||.+.|.++
T Consensus 243 ~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 243 RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh
Confidence 233445566777766655433 13456789888877776665 68999999988643
No 122
>KOG0920|consensus
Probab=98.91 E-value=1.7e-08 Score=103.18 Aligned_cols=257 Identities=16% Similarity=0.181 Sum_probs=150.6
Q ss_pred HHHHHHHHhHhcccccccccccCCccccCcc--ccc-----------ccCCccccCCCHHHHHHHHhccCeEEecCCCCc
Q psy7790 97 EEEKILRSVAETKALMGVAELAKGIQYNDPI--KTS-----------WRAPRCILSLPDQVHDIIRRNLRILVEGDDVPP 163 (367)
Q Consensus 97 ~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~--~~~-----------~~~~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~ 163 (367)
..+++|.++.+..-+++.++||+|||-+.|- +.. .+.|+.|.+.+ +++.+....+...| ..+.-
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIs--vAeRVa~ER~~~~g-~~VGY 253 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAIS--VAERVAKERGESLG-EEVGY 253 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHH--HHHHHHHHhccccC-CeeeE
Confidence 3788999999999999999999999933331 111 12344444333 22333222111111 11211
Q ss_pred ccc--------ccccCCCCHHHHHHHHHcCC-CCC-----ChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHH
Q psy7790 164 ACC--------SFRLMKLPESLVRALEAKGI-KKP-----TPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKI 229 (367)
Q Consensus 164 ~~~--------~f~~l~~p~~ll~~l~~~g~-~~p-----t~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v 229 (367)
+++ +---+.|-|-+++.|..... ..- +.+..+.++.-|---+...+-..+++-++||+|||+..
T Consensus 254 qvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~da-- 331 (924)
T KOG0920|consen 254 QVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDA-- 331 (924)
T ss_pred EEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecch--
Confidence 211 11125688888888865322 111 12222222221112222222233578899999999973
Q ss_pred HHHHHHhcCCCEEEEeCCCCccC--------------CCCcceEE------------EEEech---hhHHHHHHHHHhhc
Q psy7790 230 QNFARSALVKPITINVGRAGKIM--------------PSMNVVQE------------VEYVKQ---EAKIVYLLECLQKT 280 (367)
Q Consensus 230 ~~l~~~~l~~~~~i~~~~~~~~~--------------~~~~i~~~------------~~~~~~---~~k~~~l~~~l~~~ 280 (367)
.....|+....++.+....... ......+. ...... ..-+..|+..+...
T Consensus 332 -e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~ 410 (924)
T KOG0920|consen 332 -ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDER 410 (924)
T ss_pred -HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccC
Confidence 3344455554444443221100 00000000 000011 12233444444433
Q ss_pred --CCCeEEeeccHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCC
Q psy7790 281 --EPPVLIFAEKKQDVDAIHEYLLLK-------GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIK 351 (367)
Q Consensus 281 --~~~~iVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~ 351 (367)
.+.+|||-+...++..+.+.|... .+-+.++|+.|+..+...+...--.|..+|+++|++|+-.|-|++|-
T Consensus 411 ~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVv 490 (924)
T KOG0920|consen 411 EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVV 490 (924)
T ss_pred CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeE
Confidence 467999999999999999999642 36788899999999999999988889999999999999999999999
Q ss_pred EEEEcCCC
Q psy7790 352 HVINTEAK 359 (367)
Q Consensus 352 ~VI~yd~P 359 (367)
+||..+.-
T Consensus 491 yVIDsG~~ 498 (924)
T KOG0920|consen 491 YVIDSGLV 498 (924)
T ss_pred EEEecCee
Confidence 99987653
No 123
>KOG0333|consensus
Probab=98.91 E-value=2e-09 Score=101.63 Aligned_cols=167 Identities=23% Similarity=0.369 Sum_probs=123.1
Q ss_pred ccccCCccccCCCHHHHHHHHhccCeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHH
Q psy7790 129 TSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTI 208 (367)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~I 208 (367)
.||.. ..+.+|+...|.-++..+.+.+.|..+|.++++|++.++|..+++.+.+.||..|||||.++||.++.
T Consensus 209 rhW~~-k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ------ 281 (673)
T KOG0333|consen 209 RHWSE-KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQ------ 281 (673)
T ss_pred cchhh-hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhc------
Confidence 46765 55778999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh-cCCCeEEe
Q psy7790 209 FSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK-TEPPVLIF 287 (367)
Q Consensus 209 l~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~~~iVF 287 (367)
++-.|+..-|-+.....|.-..+ +.+..... +..+++. .++.++|.
T Consensus 282 ------~rD~igvaETgsGktaaf~ipLl-----~~IsslP~----------------------~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 282 ------NRDPIGVAETGSGKTAAFLIPLL-----IWISSLPP----------------------MARLENNIEGPYAIIL 328 (673)
T ss_pred ------cCCeeeEEeccCCccccchhhHH-----HHHHcCCC----------------------cchhhhcccCceeeee
Confidence 67777776666554433322211 11111100 0011111 25669999
Q ss_pred eccHHHHHHHHHHH----HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 288 AEKKQDVDAIHEYL----LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 288 ~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
.+|++.+..|...- ...|+.+..+-||++-++.---+ +. .+.|+|||+
T Consensus 329 aptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fql---s~-gceiviatP 380 (673)
T KOG0333|consen 329 APTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQL---SM-GCEIVIATP 380 (673)
T ss_pred chHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhh---hc-cceeeecCc
Confidence 99999988777654 34489999999999877653222 22 478999998
No 124
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3e-08 Score=98.26 Aligned_cols=142 Identities=28% Similarity=0.414 Sum_probs=110.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
..|.+++++..+++.+.+.||..|||||.++||.++. ++-++..+.|=+.+...+.-..+.. +...
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~------------g~Dvi~~A~TGsGKT~Af~lP~l~~-l~~~- 94 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILA------------GRDVLGQAQTGTGKTAAFLLPLLQK-ILKS- 94 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHHHHHHHHHHHH-Hhcc-
Confidence 6799999999999999999999999999999999997 5778888888877766665444322 0000
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCC-CeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCCHHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEP-PVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKDQEE 319 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~ 319 (367)
..... ++||+++|++.|.++++.+... ++.+..++||++...
T Consensus 95 --------------------------------~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~ 142 (513)
T COG0513 95 --------------------------------VERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK 142 (513)
T ss_pred --------------------------------cccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH
Confidence 00111 2899999999999999888533 578999999999887
Q ss_pred HHHHHHHHhcCCCcEEEecc-----ccccc-CCcCCCCEEEEcC
Q psy7790 320 RTRSVESFRKGQKDVMVATD-----VASKG-LDFEEIKHVINTE 357 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~VI~yd 357 (367)
+...+ +.| .+|||||+ .+.+| +|+.+|.++|.-.
T Consensus 143 q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 143 QIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred HHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 76555 446 99999999 45566 8999999998754
No 125
>KOG0347|consensus
Probab=98.82 E-value=2.3e-08 Score=95.15 Aligned_cols=139 Identities=23% Similarity=0.334 Sum_probs=97.5
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 162 PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 162 ~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
+..+..|.++.+|..++++|.+.||..||+||..+||+++...+.-+-..-.+...|++|.--+- ..+.
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv---~~l~-------- 245 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIV---ERLL-------- 245 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhh---hhhh--------
Confidence 45678899999999999999999999999999999999986333322222233445555533221 1000
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCC--eEEeeccHHHHHHHHHHHHh----CCCeEEEEecCC
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGK 315 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~--~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~ 315 (367)
...+..|. +-. .....++ +|||++|++.|..+...|.. .++.+..+.|||
T Consensus 246 -----------~~s~~s~e------------~~~-~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGL 301 (731)
T KOG0347|consen 246 -----------ESSDDSQE------------LSN-TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGL 301 (731)
T ss_pred -----------hccchHhh------------hhh-HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechh
Confidence 00010010 000 1122334 89999999999999999954 389999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 316 DQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 316 ~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+....++++.. .-+|+|||+
T Consensus 302 avqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 302 AVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred HHHHHHHHHhc----CCCEEEecc
Confidence 99999988865 678999999
No 126
>KOG0926|consensus
Probab=98.81 E-value=5e-08 Score=96.50 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=44.4
Q ss_pred EEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC
Q psy7790 308 AVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 308 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
|.++++-++.+...+++..--.|..-++|||+||+..|-||+|++||.-+.
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr 657 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGR 657 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccc
Confidence 566777788888888888888898899999999999999999999998654
No 127
>KOG0336|consensus
Probab=98.75 E-value=1.9e-07 Score=86.11 Aligned_cols=186 Identities=22% Similarity=0.406 Sum_probs=127.5
Q ss_pred ccccc-ccCCccccCCCHHHHHHHHhc-cCeEE----ec--CCCCcccccccc-CCCCHHHHHHHHHcCCCCCChhhhhc
Q psy7790 126 PIKTS-WRAPRCILSLPDQVHDIIRRN-LRILV----EG--DDVPPACCSFRL-MKLPESLVRALEAKGIKKPTPIQVQG 196 (367)
Q Consensus 126 p~~~~-~~~~~~i~~~~~~~~~~~~~~-~~i~~----~g--~~~~~~~~~f~~-l~~p~~ll~~l~~~g~~~pt~iQ~~~ 196 (367)
|+... +..+.+..+|+..+...+++. +.+.+ .| ..+|+|..+|++ ++--..+++.+++.||..|||||.|+
T Consensus 171 Pi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQa 250 (629)
T KOG0336|consen 171 PIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQA 250 (629)
T ss_pred chhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcc
Confidence 55544 355677899999999999976 45554 23 367899999997 67888999999999999999999999
Q ss_pred ccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHH
Q psy7790 197 IPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLEC 276 (367)
Q Consensus 197 ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 276 (367)
||.+|+ ..-.+.++-|-+.+...++...+ ..+....... .
T Consensus 251 WPI~LQ------------G~DliGVAQTgtgKtL~~L~pg~---ihi~aqp~~~-----------------~-------- 290 (629)
T KOG0336|consen 251 WPILLQ------------GIDLIGVAQTGTGKTLAFLLPGF---IHIDAQPKRR-----------------E-------- 290 (629)
T ss_pred cceeec------------CcceEEEEecCCCcCHHHhccce---eeeeccchhh-----------------h--------
Confidence 999997 55566777776665444332211 1111110000 0
Q ss_pred HhhcCCCeEEeeccHHHHHHHHHHH---HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc------ccccCCc
Q psy7790 277 LQKTEPPVLIFAEKKQDVDAIHEYL---LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV------ASKGLDF 347 (367)
Q Consensus 277 l~~~~~~~iVF~~s~~~~~~l~~~L---~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~------~~rGlDi 347 (367)
+..++.+||+++|++.+..+.... ..+|....+++|+-+ |...+++++.| ..+++||+- ..--||+
T Consensus 291 -qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggn---R~eqie~lkrg-veiiiatPgrlndL~~~n~i~l 365 (629)
T KOG0336|consen 291 -QRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGN---RNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINL 365 (629)
T ss_pred -ccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCC---chhHHHHHhcC-ceEEeeCCchHhhhhhcCeeee
Confidence 233567999999999887776555 345888888888865 55566666654 789999982 1223555
Q ss_pred CCCCEEEEc
Q psy7790 348 EEIKHVINT 356 (367)
Q Consensus 348 ~~v~~VI~y 356 (367)
..|.++|.-
T Consensus 366 ~siTYlVlD 374 (629)
T KOG0336|consen 366 ASITYLVLD 374 (629)
T ss_pred eeeEEEEec
Confidence 566665543
No 128
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.74 E-value=1.3e-07 Score=99.49 Aligned_cols=87 Identities=20% Similarity=0.364 Sum_probs=70.3
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDF 347 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi 347 (367)
.+.+++...++++|||++|+...+.++..|.. .++.+ +..+.. ..|.+++++|+.|+..||+||+.+++|+|+
T Consensus 665 ~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~ 741 (850)
T TIGR01407 665 YIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDF 741 (850)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeeccccc
Confidence 34445555678899999999999999999975 24443 344443 578999999999999999999999999999
Q ss_pred CCCC--EEEEcCCCCC
Q psy7790 348 EEIK--HVINTEAKIK 361 (367)
Q Consensus 348 ~~v~--~VI~yd~P~~ 361 (367)
|+.. .||...+|..
T Consensus 742 ~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 742 PGNGLVCLVIPRLPFA 757 (850)
T ss_pred CCCceEEEEEeCCCCC
Confidence 9877 7788898863
No 129
>KOG0338|consensus
Probab=98.72 E-value=2.7e-08 Score=93.94 Aligned_cols=146 Identities=26% Similarity=0.344 Sum_probs=106.7
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
..+|.+|.+...|++++...||..|||||..+||.++. .+-++.+.||-+.....|+-..+..-++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvall------------gkDIca~A~TGsGKTAAF~lPiLERLlY-- 245 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALL------------GKDICACAATGSGKTAAFALPILERLLY-- 245 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhh------------cchhhheecccCCchhhhHHHHHHHHhc--
Confidence 45899999999999999999999999999999998876 5667777888777655554332211000
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEER 320 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R 320 (367)
-+ .+....++||.|+|++.+-.++...+.. .+.|+..-||++-...
T Consensus 246 --------rP----------------------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~Q 295 (691)
T KOG0338|consen 246 --------RP----------------------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQ 295 (691)
T ss_pred --------Cc----------------------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHH
Confidence 00 0001236999999999888877766443 7899999999998888
Q ss_pred HHHHHHHhcCCCcEEEecc-------cccccCCcCCCCEEEEcCC
Q psy7790 321 TRSVESFRKGQKDVMVATD-------VASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd-------~~~rGlDi~~v~~VI~yd~ 358 (367)
..++ ...-+|+|||+ .-+.+.++.+|.+.|.-..
T Consensus 296 E~~L----Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 296 EAVL----RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred HHHH----hhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 7777 34679999999 2235666777777766543
No 130
>KOG0331|consensus
Probab=98.68 E-value=1.1e-07 Score=91.81 Aligned_cols=145 Identities=27% Similarity=0.399 Sum_probs=109.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.|..++++..+...++..||..|||||.++||.++. .+-++..+.|=+.+...+....+..-..
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~------------GrD~v~iA~TGSGKTLay~lP~i~~l~~---- 155 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALS------------GRDLVGIARTGSGKTLAYLLPAIVHLNN---- 155 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceecc------------CCceEEEeccCCcchhhhhhHHHHHHHh----
Confidence 788999999999999999999999999999999997 6788888888777766554432211000
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERT 321 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~ 321 (367)
....+.. .++.+||.++|++.|..+...+... ++++.+++||.+.....
T Consensus 156 --------------------------~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~ 209 (519)
T KOG0331|consen 156 --------------------------EQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL 209 (519)
T ss_pred --------------------------ccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH
Confidence 0000111 2456999999999999999988665 46699999999877766
Q ss_pred HHHHHHhcCCCcEEEecc-----ccccc-CCcCCCCEEEEcC
Q psy7790 322 RSVESFRKGQKDVMVATD-----VASKG-LDFEEIKHVINTE 357 (367)
Q Consensus 322 ~~~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~VI~yd 357 (367)
+.+ +. .++|+|||+ .+.+| +|+..|.++|.-.
T Consensus 210 ~~l---~~-gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 210 RDL---ER-GVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred HHH---hc-CCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 555 23 489999998 44555 7888999998754
No 131
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.68 E-value=8.2e-08 Score=102.35 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=71.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC------C---CeEEEEecCCCHHHHHHHHHHHhcCCC-cEEEecccccccCCcCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK------G---VEAVAIHGGKDQEERTRSVESFRKGQK-DVMVATDVASKGLDFEEI 350 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~------~---~~~~~lhg~~~~~~R~~~~~~F~~g~~-~vLVaTd~~~rGlDi~~v 350 (367)
++++||||.++..|+.++..|... + ..+..+||+++ ++..++++|+++.. .|+|++|++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 368999999999999999887642 2 25677999986 56789999999987 699999999999999999
Q ss_pred CEEEEcCCCCCcccc
Q psy7790 351 KHVINTEAKIKKREH 365 (367)
Q Consensus 351 ~~VI~yd~P~~~~~Y 365 (367)
.+||++..|.|...|
T Consensus 776 ~~vVf~rpvkS~~lf 790 (1123)
T PRK11448 776 CNLVFLRRVRSRILY 790 (1123)
T ss_pred cEEEEecCCCCHHHH
Confidence 999999999987765
No 132
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.68 E-value=6.3e-09 Score=87.66 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=79.5
Q ss_pred HHHHHHHHhHhcccccccccccCCcc--ccCcccccccC----CccccCCCHHHHHHHHh----ccC-------eEEecC
Q psy7790 97 EEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA----PRCILSLPDQVHDIIRR----NLR-------ILVEGD 159 (367)
Q Consensus 97 ~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~----~~~i~~~~~~~~~~~~~----~~~-------i~~~g~ 159 (367)
.|.++++.+.+|++++..|+||+||| |..|+...+.. ...+..++...+.+... .+. ...+|.
T Consensus 3 ~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 82 (169)
T PF00270_consen 3 LQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQ 82 (169)
T ss_dssp HHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTS
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccc
Confidence 39999999999999999999999999 56666655422 22344555544444433 221 122332
Q ss_pred CCCcccc-ccc---c--CCCCHHHHHHHHHcCCCCCChhhhhccccc-------chHHHHHHHhhccC--CceEEeecCC
Q psy7790 160 DVPPACC-SFR---L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA-------LSEDVRTIFSFFRG--QRQTLLFSAT 224 (367)
Q Consensus 160 ~~~~~~~-~f~---~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-------l~~~v~~Il~~l~~--~~Q~il~SAT 224 (367)
....... .+. + +++|..+.+.+..... ....+..-+++.+ +...+..|+..+.. +.|++++|||
T Consensus 83 ~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT 161 (169)
T PF00270_consen 83 SISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSAT 161 (169)
T ss_dssp CHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESS
T ss_pred cccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeC
Confidence 2110111 111 1 6799999999886322 2211222122111 11456677777643 5899999999
Q ss_pred CcHHHHHH
Q psy7790 225 MPKKIQNF 232 (367)
Q Consensus 225 ~~~~v~~l 232 (367)
++..++++
T Consensus 162 ~~~~~~~~ 169 (169)
T PF00270_consen 162 LPSNVEKL 169 (169)
T ss_dssp STHHHHHH
T ss_pred CChhHhhC
Confidence 99777653
No 133
>KOG0330|consensus
Probab=98.61 E-value=6e-07 Score=82.42 Aligned_cols=142 Identities=26% Similarity=0.342 Sum_probs=107.6
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEE
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~ 242 (367)
....+|.++++.++|++++...||..||+||.++||.++. ++-+|.++-|-+.+...++-..+
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~------------g~dvIglAeTGSGKT~afaLPIl----- 120 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALG------------GRDVIGLAETGSGKTGAFALPIL----- 120 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhC------------CCcEEEEeccCCCchhhhHHHHH-----
Confidence 4556888999999999999999999999999999999997 78888888887666554443221
Q ss_pred EEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCH
Q psy7790 243 INVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQ 317 (367)
Q Consensus 243 i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~ 317 (367)
-.+|++ ..+.++|.++|++-+..|++.+... |+.+..+-|||+.
T Consensus 121 -------------------------------~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m 169 (476)
T KOG0330|consen 121 -------------------------------QRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM 169 (476)
T ss_pred -------------------------------HHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH
Confidence 112221 1245999999999999999998655 7899999999986
Q ss_pred HHHHHHHHHHhcCCCcEEEeccc------c-cccCCcCCCCEEEEc
Q psy7790 318 EERTRSVESFRKGQKDVMVATDV------A-SKGLDFEEIKHVINT 356 (367)
Q Consensus 318 ~~R~~~~~~F~~g~~~vLVaTd~------~-~rGlDi~~v~~VI~y 356 (367)
......+ .-+-.|||||+- - .+|+....+++.|..
T Consensus 170 ~~q~~~L----~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 170 MLQANQL----SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred HHHHHHh----hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 5443333 346789999982 1 377777777766654
No 134
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.60 E-value=4.3e-07 Score=88.37 Aligned_cols=149 Identities=23% Similarity=0.300 Sum_probs=105.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
.+|++++++..+++.|...||..||++|.++||.++. ++-+++.+.|-+.+...++-..+..-.....
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~------------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~ 75 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLA------------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPA 75 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCcEEEECCCCchHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999886 4567778888777755443322111000000
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHH----hCCCeEEEEecCCCHHHHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLL----LKGVEAVAIHGGKDQEERT 321 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~ 321 (367)
... -...++++||.++|++-|.++++.+. ..|+++..++|+.+.....
T Consensus 76 -~~~---------------------------~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~ 127 (423)
T PRK04837 76 -PED---------------------------RKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQL 127 (423)
T ss_pred -ccc---------------------------cccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH
Confidence 000 00123569999999999999877664 3478999999998766554
Q ss_pred HHHHHHhcCCCcEEEecc-----cc-cccCCcCCCCEEEEcCC
Q psy7790 322 RSVESFRKGQKDVMVATD-----VA-SKGLDFEEIKHVINTEA 358 (367)
Q Consensus 322 ~~~~~F~~g~~~vLVaTd-----~~-~rGlDi~~v~~VI~yd~ 358 (367)
..+ .+..+|||+|+ .+ ...+++.++.+||..++
T Consensus 128 ~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 128 KVL----ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred HHh----cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 433 34579999998 12 24578899999987654
No 135
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.56 E-value=6.2e-07 Score=90.90 Aligned_cols=142 Identities=25% Similarity=0.389 Sum_probs=104.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
..+|.+++++..+++.|.++||..|||+|.++||.++. .+-+++.+-|=+.+...+.-..+.. +
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~------------g~dvl~~ApTGsGKT~af~lpll~~---l- 68 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN------------GRDVLGMAQTGSGKTAAFSLPLLHN---L- 68 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc------------CCCEEEEcCCCCcHHHHHHHHHHHH---h-
Confidence 34688999999999999999999999999999998875 4556777778777665443322110 0
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCCHHH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKDQEE 319 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~ 319 (367)
.. ....+++||.|+|++.|..++..+... ++.+..+||+.+...
T Consensus 69 -~~------------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~ 117 (629)
T PRK11634 69 -DP------------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 (629)
T ss_pred -hh------------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH
Confidence 00 011346899999999999998877542 789999999988766
Q ss_pred HHHHHHHHhcCCCcEEEecc-----cccc-cCCcCCCCEEEEcC
Q psy7790 320 RTRSVESFRKGQKDVMVATD-----VASK-GLDFEEIKHVINTE 357 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd-----~~~r-GlDi~~v~~VI~yd 357 (367)
+...+ .+..+|+|+|+ .+.+ .+++.++.+||.-+
T Consensus 118 q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 118 QLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred HHHHh----cCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 55444 34588999996 3334 47899999998754
No 136
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.56 E-value=5.9e-07 Score=88.36 Aligned_cols=140 Identities=22% Similarity=0.337 Sum_probs=106.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
.+|..++++..+++.|.+.||..|||+|.++||.++. +..+++.+-|=+.+...+.-..+.
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~------------g~dvi~~a~TGsGKT~a~~lpil~------- 64 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILA------------GKDVIAQAKTGSGKTAAFGLGLLQ------- 64 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc------------CCCEEEECCCCCcHHHHHHHHHHH-------
Confidence 4789999999999999999999999999999998875 456777787877765543322211
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCCHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKDQE 318 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~ 318 (367)
.+.. ...++||.|+|++-+..+++.++.. ++.+..++|+.+..
T Consensus 65 ------------------------------~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~ 114 (460)
T PRK11776 65 ------------------------------KLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMG 114 (460)
T ss_pred ------------------------------HhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChH
Confidence 1110 1235899999999999999887643 68899999999987
Q ss_pred HHHHHHHHHhcCCCcEEEecc-----ccc-ccCCcCCCCEEEEcCC
Q psy7790 319 ERTRSVESFRKGQKDVMVATD-----VAS-KGLDFEEIKHVINTEA 358 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd-----~~~-rGlDi~~v~~VI~yd~ 358 (367)
.+...++ +..+|+|+|+ .+. ..+++.++++||..++
T Consensus 115 ~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 115 PQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred HHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 6654443 5689999996 333 4588999999997664
No 137
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.55 E-value=6.7e-07 Score=87.30 Aligned_cols=145 Identities=26% Similarity=0.387 Sum_probs=105.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
+|++++++..+++.+.+.||..||++|.++||.++. ++.+++.+.|=+.+...+.-..+..-..
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~------------g~d~l~~apTGsGKT~~~~lp~l~~l~~---- 65 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALD------------GRDVLGSAPTGTGKTAAFLLPALQHLLD---- 65 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHHHHHHHHHHHHHhh----
Confidence 588999999999999999999999999999999886 4567777888777765443222110000
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHH----hCCCeEEEEecCCCHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLL----LKGVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~ 322 (367)
.... ...+.++||.++|++.+..+++.+. ..++++..++|+.+...+..
T Consensus 66 ~~~~---------------------------~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~ 118 (434)
T PRK11192 66 FPRR---------------------------KSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAE 118 (434)
T ss_pred cccc---------------------------CCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHH
Confidence 0000 0113468999999999988877654 34789999999998877655
Q ss_pred HHHHHhcCCCcEEEecc------cccccCCcCCCCEEEEcCC
Q psy7790 323 SVESFRKGQKDVMVATD------VASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 323 ~~~~F~~g~~~vLVaTd------~~~rGlDi~~v~~VI~yd~ 358 (367)
.+ .+..+|||||+ +....+++.++++||.-++
T Consensus 119 ~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEa 156 (434)
T PRK11192 119 VF----SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 156 (434)
T ss_pred Hh----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECH
Confidence 44 46788999998 2235678889999987654
No 138
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.53 E-value=1e-06 Score=89.19 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=47.3
Q ss_pred HHHHHHHHhC--CCeEEEEecCCCHHH--HHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC
Q psy7790 295 DAIHEYLLLK--GVEAVAIHGGKDQEE--RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 295 ~~l~~~L~~~--~~~~~~lhg~~~~~~--R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
+++.+.|... +.++..+-++..... -...+..|..|+.+|||.|..++.|.|||+|+.|.-.|.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~a 561 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDA 561 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEec
Confidence 3444444333 456666666655433 356799999999999999999999999999998876554
No 139
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.53 E-value=1.1e-06 Score=88.33 Aligned_cols=149 Identities=21% Similarity=0.295 Sum_probs=106.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
.+|.+++++..|++.|.+.||..||+||.++||.++. .+-+++.+-|=+.+...++-..+..-..
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~------------G~Dvi~~ApTGSGKTlafllpil~~l~~--- 73 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALP------------GGDVAGQAQTGTGKTLAFLVAVMNRLLS--- 73 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEEcCCCCcHHHHHHHHHHHHHHh---
Confidence 4699999999999999999999999999999999886 5667777778777765544332211000
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERT 321 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~ 321 (367)
. ... .. -....+++||.++|++.|..+++.+.. .++.+..+||+.+...+.
T Consensus 74 ~-~~~--~~----------------------~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~ 128 (572)
T PRK04537 74 R-PAL--AD----------------------RKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128 (572)
T ss_pred c-ccc--cc----------------------cccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH
Confidence 0 000 00 001135799999999999998887754 378899999999877665
Q ss_pred HHHHHHhcCCCcEEEecc-----cccc--cCCcCCCCEEEEcCC
Q psy7790 322 RSVESFRKGQKDVMVATD-----VASK--GLDFEEIKHVINTEA 358 (367)
Q Consensus 322 ~~~~~F~~g~~~vLVaTd-----~~~r--GlDi~~v~~VI~yd~ 358 (367)
..+ .+..+|||+|+ .+.+ .+++..+++||..++
T Consensus 129 ~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 129 ELL----QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred HHH----hCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 544 35689999996 2222 467888888886553
No 140
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.53 E-value=9.6e-07 Score=86.68 Aligned_cols=147 Identities=24% Similarity=0.376 Sum_probs=104.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
+|++++++..+++.|.+.||..||++|.++||.++. .+-+++.+-|=+.+...+.-..+..-. ..
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~------------g~dvlv~apTGsGKTla~~lpil~~l~---~~ 66 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLE------------GRDLMASAQTGTGKTAGFTLPLLQHLI---TR 66 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCCcHHHHHHHHHHHHhh---hc
Confidence 688899999999999999999999999999998886 455677777877776554333221100 00
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~ 322 (367)
.... . ...+.++||.|+|++.|..+.+.+.. .++.+..++|+.+......
T Consensus 67 ~~~~---~-----------------------~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 120 (456)
T PRK10590 67 QPHA---K-----------------------GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 (456)
T ss_pred cccc---c-----------------------cCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH
Confidence 0000 0 01134689999999999988887754 3688899999998765443
Q ss_pred HHHHHhcCCCcEEEecc------cccccCCcCCCCEEEEcCC
Q psy7790 323 SVESFRKGQKDVMVATD------VASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 323 ~~~~F~~g~~~vLVaTd------~~~rGlDi~~v~~VI~yd~ 358 (367)
.+ .+..+|||||+ .....+++.++++||..++
T Consensus 121 ~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 121 KL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred HH----cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 32 46789999997 2345678999999987653
No 141
>KOG0925|consensus
Probab=98.49 E-value=2.3e-06 Score=80.80 Aligned_cols=271 Identities=13% Similarity=0.173 Sum_probs=146.0
Q ss_pred cCCcccHhhhHHHHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCccccCcc---------ccc--ccCCc
Q psy7790 67 MSNISLLDQHSELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQYNDPI---------KTS--WRAPR 135 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~---------~~~--~~~~~ 135 (367)
...|..+.-+..--+-++...+-|.=. +..+-+....+..=++.+++||||||-+.|- ... .+.|+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~---~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQpr 100 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWE---QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPR 100 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHH---hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCch
Confidence 344555555554444443333333222 2456677777888889999999999944442 211 12344
Q ss_pred cccCCCHHHHHHHHhccCeEEecCCCCccccccccCCCCHHHHHHH---------HHcCCCC------CChhhhhccccc
Q psy7790 136 CILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL---------EAKGIKK------PTPIQVQGIPAA 200 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l---------~~~g~~~------pt~iQ~~~ip~~ 200 (367)
.+++|+ ++..+...+.+..|. .+.-. -.|++...|.-+++.+ ....+.. ....+.+.+-
T Consensus 101 rvaams--va~RVadEMDv~lG~-EVGys-IrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlA-- 174 (699)
T KOG0925|consen 101 RVAAMS--VAQRVADEMDVTLGE-EVGYS-IRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA-- 174 (699)
T ss_pred HHHHHH--HHHHHHHHhccccch-hcccc-ccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHH--
Confidence 444443 445555555555432 11111 1355555555554443 2211110 1111111110
Q ss_pred chHHHHHHHhhc---cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHH
Q psy7790 201 LSEDVRTIFSFF---RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECL 277 (367)
Q Consensus 201 l~~~v~~Il~~l---~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 277 (367)
.+-+.-+++.. +.+-.+|.+|||+-.. -.+.|+.|+-.+.+..... +.-+|..-.+.+.+...++.+
T Consensus 175 -TDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~~P------vEi~Yt~e~erDylEaairtV 244 (699)
T KOG0925|consen 175 -TDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGTHP------VEIFYTPEPERDYLEAAIRTV 244 (699)
T ss_pred -HHHHHHHHHHHHhhCCCceEEEeecccchH---HHHHHhCCCCeeecCCCCc------eEEEecCCCChhHHHHHHHHH
Confidence 02233333333 2477899999998432 2445677766655543211 111222222334444433332
Q ss_pred h-----hcCCCeEEeeccHHHHHHHHHHHHhC---------CCeEEEEecCCCHHHHHHHHHHHh---cC--CCcEEEec
Q psy7790 278 Q-----KTEPPVLIFAEKKQDVDAIHEYLLLK---------GVEAVAIHGGKDQEERTRSVESFR---KG--QKDVMVAT 338 (367)
Q Consensus 278 ~-----~~~~~~iVF~~s~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~~~~F~---~g--~~~vLVaT 338 (367)
. ..++-+|||...-++.+...+.+... .++|.++| +.+..++++-.- +| ..+|+|+|
T Consensus 245 ~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvst 320 (699)
T KOG0925|consen 245 LQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVST 320 (699)
T ss_pred HHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEe
Confidence 2 23567999999988877777766432 36888888 333444443222 12 24799999
Q ss_pred ccccccCCcCCCCEEEEcCCCC
Q psy7790 339 DVASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 339 d~~~rGlDi~~v~~VI~yd~P~ 360 (367)
+++.-.+-+++|.+||.-++-+
T Consensus 321 niaetsltidgiv~VIDpGf~k 342 (699)
T KOG0925|consen 321 NIAETSLTIDGIVFVIDPGFSK 342 (699)
T ss_pred cchheeeeeccEEEEecCchhh
Confidence 9999999999999999988754
No 142
>KOG0340|consensus
Probab=98.31 E-value=3.1e-06 Score=76.91 Aligned_cols=123 Identities=29% Similarity=0.358 Sum_probs=92.7
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 164 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 164 ~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
....|+.+|+..++.+.++.+|+..|||||..|||.+|. ++-.+.+.-|-+.....|+-..+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe------------Grdcig~AkTGsGKT~AFaLPil------ 66 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILE------------GRDCIGCAKTGSGKTAAFALPIL------ 66 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhc------------ccccccccccCCCcchhhhHHHH------
Confidence 356789999999999999999999999999999999997 55566555555444433332221
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcC--CCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTE--PPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQ 317 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~ 317 (367)
..|.+.+ .=++||++|++.+-++++.|... ++++..+.|||+.
T Consensus 67 -------------------------------~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~ 115 (442)
T KOG0340|consen 67 -------------------------------NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDM 115 (442)
T ss_pred -------------------------------HhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHH
Confidence 1122222 23799999999999999999544 6899999999886
Q ss_pred HHHHHHHHHHhcCCCcEEEecc
Q psy7790 318 EERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 318 ~~R~~~~~~F~~g~~~vLVaTd 339 (367)
-.....+ ..+-.++|+|+
T Consensus 116 i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 116 IMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred hhhhhhc----ccCCCeEecCc
Confidence 6555554 56778999998
No 143
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.25 E-value=1.9e-05 Score=77.95 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=106.2
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
...|..++++..|++.|.+.||..|+++|.++|+.++. ++-+++.+.|-+.+...+.-..+..-..
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~------------G~dvi~~apTGSGKTlay~lpil~~l~~-- 151 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLA------------GHDAIGRAQTGTGKTAAFLISIINQLLQ-- 151 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHHHHHHHHHHHHHHh--
Confidence 45688899999999999999999999999999998876 5667778888887765443322211000
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEER 320 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R 320 (367)
.... ... ....+++||.++|++.+.++++.+.. .++.+..++|+.+....
T Consensus 152 --~~~~---~~~---------------------~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~ 205 (475)
T PRK01297 152 --TPPP---KER---------------------YMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ 205 (475)
T ss_pred --cCcc---ccc---------------------ccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH
Confidence 0000 000 00135699999999999998887754 37899999999876544
Q ss_pred HHHHHHHhcCCCcEEEeccc------ccccCCcCCCCEEEEcC
Q psy7790 321 TRSVESFRKGQKDVMVATDV------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd~------~~rGlDi~~v~~VI~yd 357 (367)
. +.+..+..+|||+|+- ....+.+.++++||..+
T Consensus 206 ~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 206 L---KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred H---HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 3 4556778899999982 22356778888888754
No 144
>KOG0385|consensus
Probab=98.21 E-value=1e-05 Score=80.34 Aligned_cols=129 Identities=21% Similarity=0.324 Sum_probs=99.7
Q ss_pred HHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEe
Q psy7790 233 ARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIH 312 (367)
Q Consensus 233 ~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh 312 (367)
.++.+.+|..+.-..++. +.....|.+..+..-.-+..|+..|...+.+||||..-....+-|-.|+..+++..+-+-
T Consensus 441 LRKccnHPYLF~g~ePg~--pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiD 518 (971)
T KOG0385|consen 441 LRKCCNHPYLFDGAEPGP--PYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLD 518 (971)
T ss_pred HHHhcCCccccCCCCCCC--CCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeec
Confidence 344556666655433333 333333333333333445667777778889999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhcCC---CcEEEecccccccCCcCCCCEEEEcCCCCCcc
Q psy7790 313 GGKDQEERTRSVESFRKGQ---KDVMVATDVASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 313 g~~~~~~R~~~~~~F~~g~---~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
|.++-++|..+++.|..-. .-.|++|-+.+.||++-..+.||.||--+||.
T Consensus 519 GSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ 572 (971)
T KOG0385|consen 519 GSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQ 572 (971)
T ss_pred CCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCch
Confidence 9999999999999998755 33689999999999999999999999888774
No 145
>KOG0335|consensus
Probab=98.18 E-value=1.1e-05 Score=76.96 Aligned_cols=161 Identities=28% Similarity=0.387 Sum_probs=115.1
Q ss_pred CeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHH
Q psy7790 153 RILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNF 232 (367)
Q Consensus 153 ~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l 232 (367)
.+.+.|.++|+.+..|.+..++..+...++..++..|||+|..+||.+.. .+-.+.+.-|=+.+...+
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~------------Grdl~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISG------------GRDLMACAQTGSGKTAAF 128 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeec------------CCceEEEccCCCcchHHH
Confidence 34568999999999999999999999999999999999999999999986 666677777766665555
Q ss_pred HHHhcCC---CEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----C
Q psy7790 233 ARSALVK---PITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----G 305 (367)
Q Consensus 233 ~~~~l~~---~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~ 305 (367)
.-..+.. .-......... ...+.+||.+||++-|+.+++.-+.. +
T Consensus 129 LiPii~~~~~~~~~~~~~~~~----------------------------~~~P~~lIlapTReL~~Qi~nea~k~~~~s~ 180 (482)
T KOG0335|consen 129 LIPIISYLLDEGPEDRGESGG----------------------------GVYPRALILAPTRELVDQIYNEARKFSYLSG 180 (482)
T ss_pred HHHHHHHHHhcCcccCcccCC----------------------------CCCCceEEEeCcHHHhhHHHHHHHhhccccc
Confidence 4332210 00000000000 01367999999999999999887654 5
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----ccccc-CCcCCCCEEEEcC
Q psy7790 306 VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VASKG-LDFEEIKHVINTE 357 (367)
Q Consensus 306 ~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~VI~yd 357 (367)
+.+...+|+.+ .....++..+.++|||||+ +.++| |.++++.++|.-+
T Consensus 181 ~~~~~~ygg~~----~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDE 234 (482)
T KOG0335|consen 181 MKSVVVYGGTD----LGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDE 234 (482)
T ss_pred ceeeeeeCCcc----hhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecc
Confidence 67888888844 3334455677899999998 55565 6677777666543
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.18 E-value=1.5e-05 Score=84.66 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=70.3
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCC--eEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCC-
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGV--EAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEE- 349 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~- 349 (367)
+.+++...++++|||++|++..+.++..|..... ....+.-+++...|.+++++|+.++..||++|..++.|+|+|+
T Consensus 744 i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~ 823 (928)
T PRK08074 744 IAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGD 823 (928)
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCC
Confidence 4444556778999999999999999999975422 1223333554456899999999999999999999999999997
Q ss_pred -CCEEEEcCCCC
Q psy7790 350 -IKHVINTEAKI 360 (367)
Q Consensus 350 -v~~VI~yd~P~ 360 (367)
+++||...+|.
T Consensus 824 ~l~~viI~kLPF 835 (928)
T PRK08074 824 ELSCLVIVRLPF 835 (928)
T ss_pred ceEEEEEecCCC
Confidence 48999999996
No 147
>KOG0329|consensus
Probab=98.17 E-value=4.2e-06 Score=72.79 Aligned_cols=146 Identities=21% Similarity=0.284 Sum_probs=101.3
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 162 PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 162 ~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
.-....|+++-+.+.|++++...||..|+.+|..+||..+. .-.+.--+++.|+...
T Consensus 38 ~ihssgfrdfllkpellraivdcgfehpsevqhecipqail-----------------------gmdvlcqaksgmgkta 94 (387)
T KOG0329|consen 38 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-----------------------GMDVLCQAKSGMGKTA 94 (387)
T ss_pred EEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh-----------------------cchhheecccCCCcee
Confidence 33445688888999999999999999999999999997653 1122333445555444
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCC
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKD 316 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~ 316 (367)
++.+.....+-+..+ .-.++|.|+|++.+-.+.+..... ++++..+.||++
T Consensus 95 vfvl~tlqqiepv~g------------------------~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~ 150 (387)
T KOG0329|consen 95 VFVLATLQQIEPVDG------------------------QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLF 150 (387)
T ss_pred eeehhhhhhcCCCCC------------------------eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEccee
Confidence 333322221111111 113799999999998888766433 789999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEecc------cccccCCcCCCCEEEEcCC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATD------VASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd------~~~rGlDi~~v~~VI~yd~ 358 (367)
-..-.+.++. --.|+|+|+ +-.+-+++.+|.|.|.-.+
T Consensus 151 Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 151 IKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred ccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 8877766643 567999999 2346788999998886554
No 148
>KOG0387|consensus
Probab=98.13 E-value=1.8e-05 Score=78.87 Aligned_cols=100 Identities=23% Similarity=0.378 Sum_probs=87.3
Q ss_pred chhhHHHHHHHHHh---hcCCCeEEeeccHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHHHHHHHhcCCCc--EEEec
Q psy7790 265 KQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLL-LKGVEAVAIHGGKDQEERTRSVESFRKGQKD--VMVAT 338 (367)
Q Consensus 265 ~~~~k~~~l~~~l~---~~~~~~iVF~~s~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~--vLVaT 338 (367)
+..-|+..+..+|. +.+.++|+|..|+.+.+.|-..|. ..|+.+.-+.|..+...|...+++|..+..- .|++|
T Consensus 527 k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 527 KRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred hhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 33456666666665 456789999999999999999998 6899999999999999999999999988653 58999
Q ss_pred ccccccCCcCCCCEEEEcCCCCCccc
Q psy7790 339 DVASKGLDFEEIKHVINTEAKIKKRE 364 (367)
Q Consensus 339 d~~~rGlDi~~v~~VI~yd~P~~~~~ 364 (367)
-|.+.|+++-+.+.||.||+-+||.+
T Consensus 607 rvGGLGlNLTgAnRVIIfDPdWNPSt 632 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVIIFDPDWNPST 632 (923)
T ss_pred cccccccccccCceEEEECCCCCCcc
Confidence 99999999999999999999999874
No 149
>KOG0390|consensus
Probab=98.09 E-value=2e-05 Score=79.76 Aligned_cols=97 Identities=13% Similarity=0.274 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhhcCCCeEEee---ccHHHHHHHH-HHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCc---EEEecc
Q psy7790 267 EAKIVYLLECLQKTEPPVLIFA---EKKQDVDAIH-EYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD---VMVATD 339 (367)
Q Consensus 267 ~~k~~~l~~~l~~~~~~~iVF~---~s~~~~~~l~-~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLVaTd 339 (367)
..|+..|..++.....++++|+ .......++. ..++-.|+.+..+||.|+..+|..+++.|.+-... .|.+|-
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 4567777777655554544444 4444444444 44456699999999999999999999999885443 577888
Q ss_pred cccccCCcCCCCEEEEcCCCCCcc
Q psy7790 340 VASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 340 ~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
+.+-||++-+...||.||..+||.
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa 680 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPA 680 (776)
T ss_pred cccCceeecccceEEEeCCCCCch
Confidence 999999999999999999999986
No 150
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.08 E-value=4.1e-05 Score=78.12 Aligned_cols=139 Identities=17% Similarity=0.265 Sum_probs=94.7
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
.....+|.|...+...|...|--+-+.|....+.. ... ..-.++.....|...+++.+.. .+.|+||.|.|.+
T Consensus 362 ~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~---R~D-~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 362 KKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVI---RKD-EPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred chhhccCCCCHHHHHHHHHHhCCCEEECCCCCCee---eee-CCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 35567888887666666655433333332222111 111 1124566777888888776653 4568999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEEecccccccCCcCCCC--------EEEEcCCCCC
Q psy7790 293 DVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMVATDVASKGLDFEEIK--------HVINTEAKIK 361 (367)
Q Consensus 293 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVaTd~~~rGlDi~~v~--------~VI~yd~P~~ 361 (367)
..+.|+..|...|++...+++.- .+|+..+=. ..| ...|.|||+.|+||-||.--. |||....|.|
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheS 512 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAES 512 (925)
T ss_pred HHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCch
Confidence 99999999999999999999873 333333222 456 456999999999999997333 9999888865
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.05 E-value=7.7e-05 Score=76.85 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=65.6
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHHHHHHHhc----CCCcEEEecccccccCCc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEERTRSVESFRK----GQKDVMVATDVASKGLDF 347 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~vLVaTd~~~rGlDi 347 (367)
+.+++. .++.+|||++|+...+.++..|... +.. ...+|. ..|..+++.|++ |+..||++|..++-|||+
T Consensus 527 i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 527 LPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred HHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 344444 5667999999999999999999643 333 344664 257788877774 678899999999999999
Q ss_pred CC--CCEEEEcCCCCC
Q psy7790 348 EE--IKHVINTEAKIK 361 (367)
Q Consensus 348 ~~--v~~VI~yd~P~~ 361 (367)
|+ +++||...+|..
T Consensus 602 pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 602 PGDYLTQVIITKIPFA 617 (697)
T ss_pred CCCceEEEEEEcCCCC
Confidence 86 799999999963
No 152
>KOG0345|consensus
Probab=98.04 E-value=2.7e-05 Score=73.38 Aligned_cols=148 Identities=24% Similarity=0.357 Sum_probs=106.3
Q ss_pred cccccCCCC--HHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 166 CSFRLMKLP--ESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 166 ~~f~~l~~p--~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
.+|++++.| ++++..+...||...||+|..+||.++. +.-++.=|+|-+.....+.-..+.--.
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~------------~KDVvveavTGSGKTlAFllP~le~i~-- 69 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLK------------NKDVVVEAVTGSGKTLAFLLPMLEIIY-- 69 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhc------------CCceEEEcCCCCCchhhHHHHHHHHHH--
Confidence 357777766 9999999999999999999999999986 566777788877776666544332100
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh-----CCCeEEEEecCCCHH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL-----KGVEAVAIHGGKDQE 318 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~ 318 (367)
..... ..+. .-.+||-++|++-|..|.+.+.. .+++|..+-||++.+
T Consensus 70 --rr~~~--~~~~------------------------~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~ 121 (567)
T KOG0345|consen 70 --RREAK--TPPG------------------------QVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE 121 (567)
T ss_pred --hhccC--CCcc------------------------ceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH
Confidence 00000 0000 01379999999999888776632 378899999997765
Q ss_pred HHHHHHHHHhcCCCcEEEecc-----cccc---cCCcCCCCEEEEcCC
Q psy7790 319 ERTRSVESFRKGQKDVMVATD-----VASK---GLDFEEIKHVINTEA 358 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd-----~~~r---GlDi~~v~~VI~yd~ 358 (367)
+ -++.|++...+|||+|+ .+.| ++|+.+++++|....
T Consensus 122 ~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEA 166 (567)
T KOG0345|consen 122 E---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEA 166 (567)
T ss_pred H---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecch
Confidence 4 46778888899999998 3333 677778888887543
No 153
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.03 E-value=8.9e-05 Score=77.59 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=64.7
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC--CCCEEEEc
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE--EIKHVINT 356 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~--~v~~VI~y 356 (367)
..+++++||++|++..+.++..|....+.+ ...|.-. .|.+++++|+.+...||++|..+..|+|+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 567899999999999999999997665555 4444211 356789999999899999999999999997 46678889
Q ss_pred CCCCC
Q psy7790 357 EAKIK 361 (367)
Q Consensus 357 d~P~~ 361 (367)
.+|..
T Consensus 722 kLPF~ 726 (820)
T PRK07246 722 RLPFD 726 (820)
T ss_pred cCCCC
Confidence 99854
No 154
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.01 E-value=5.7e-06 Score=69.73 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=64.7
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCC--eEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc--cccccCCcC
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGV--EAVAIHGGKDQEERTRSVESFRKGQKDVMVATD--VASKGLDFE 348 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd--~~~rGlDi~ 348 (367)
+.+++...++.+|||++|....+.+...+...+. ....+.. +..++...++.|+.+...||+|+. .++-|+|++
T Consensus 1 i~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 1 ILELISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred ChHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3566777788999999999999999999976532 1123333 255788999999999999999999 889999999
Q ss_pred C--CCEEEEcCCCCC
Q psy7790 349 E--IKHVINTEAKIK 361 (367)
Q Consensus 349 ~--v~~VI~yd~P~~ 361 (367)
+ ++.||..++|..
T Consensus 79 ~~~~r~vii~glPfp 93 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFP 93 (167)
T ss_dssp CESEEEEEEES----
T ss_pred CchhheeeecCCCCC
Confidence 6 889999999963
No 155
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.01 E-value=0.00014 Score=63.10 Aligned_cols=138 Identities=30% Similarity=0.415 Sum_probs=95.8
Q ss_pred cccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCC
Q psy7790 168 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGR 247 (367)
Q Consensus 168 f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~ 247 (367)
|++++++..+.+.+.+.|+..|++.|..+++.++. ++-+++...|-..+..-.+.
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~------------~~~~li~~~TG~GKT~~~~~------------- 55 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLS------------GRDVIGQAQTGSGKTAAFLI------------- 55 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc------------CCcEEEECCCCCcHHHHHHH-------------
Confidence 56789999999999999999999999998877664 33355555565444322111
Q ss_pred CCccCCCCcceEEEEEechhhHHHHHHHHHhh----cCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHH
Q psy7790 248 AGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK----TEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEE 319 (367)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~----~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~ 319 (367)
.++..+.. .++++||.|+++..+...+..+.. .++.+..++|+.+..+
T Consensus 56 ------------------------~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (203)
T cd00268 56 ------------------------PILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK 111 (203)
T ss_pred ------------------------HHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH
Confidence 11111111 245799999999998887776644 3789999999998876
Q ss_pred HHHHHHHHhcCCCcEEEeccc-----ccc-cCCcCCCCEEEEcCC
Q psy7790 320 RTRSVESFRKGQKDVMVATDV-----ASK-GLDFEEIKHVINTEA 358 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd~-----~~r-GlDi~~v~~VI~yd~ 358 (367)
+...+. +..+|+|+|.- +.+ -.++++++++|.-++
T Consensus 112 ~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 112 QIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred HHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 654442 67899999962 223 367788998887654
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=0.00011 Score=76.14 Aligned_cols=88 Identities=19% Similarity=0.320 Sum_probs=66.9
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCC------eEEEEecCCCHHHHHHHHHHHhc----CCCcEEEec--cc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGV------EAVAIHGGKDQEERTRSVESFRK----GQKDVMVAT--DV 340 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~lhg~~~~~~R~~~~~~F~~----g~~~vLVaT--d~ 340 (367)
|.+++...++.+|||++|....+.++..+...|+ ....+..+-...++..+++.|+. |+-.||+|+ ..
T Consensus 514 i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk 593 (705)
T TIGR00604 514 LVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGK 593 (705)
T ss_pred HHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCc
Confidence 4445555678899999999999999998876542 11223333333678899999965 466799999 78
Q ss_pred ccccCCcCC--CCEEEEcCCCC
Q psy7790 341 ASKGLDFEE--IKHVINTEAKI 360 (367)
Q Consensus 341 ~~rGlDi~~--v~~VI~yd~P~ 360 (367)
++-||||++ .+.||..++|.
T Consensus 594 ~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 594 VSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ccCccccCCCCCcEEEEEccCC
Confidence 999999987 79999999997
No 157
>KOG0391|consensus
Probab=98.00 E-value=4.2e-05 Score=79.08 Aligned_cols=104 Identities=18% Similarity=0.293 Sum_probs=92.4
Q ss_pred EEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC--cEEEe
Q psy7790 260 EVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK--DVMVA 337 (367)
Q Consensus 260 ~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~--~vLVa 337 (367)
.-+.|..-.++..|++-|..++.++|||+.-.++.+-|..+|..+|+--+-+.|....++|+..+++|..... ..+++
T Consensus 1255 iqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILS 1334 (1958)
T KOG0391|consen 1255 IQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILS 1334 (1958)
T ss_pred eecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEe
Confidence 3345666678888888888999999999999999999999999999999999999999999999999987652 46889
Q ss_pred cccccccCCcCCCCEEEEcCCCCCcc
Q psy7790 338 TDVASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 338 Td~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
|--.+-||++-+.+.||.||-=+|+.
T Consensus 1335 TrSggvGiNLtgADTVvFYDsDwNPt 1360 (1958)
T KOG0391|consen 1335 TRSGGVGINLTGADTVVFYDSDWNPT 1360 (1958)
T ss_pred ccCCccccccccCceEEEecCCCCch
Confidence 99999999999999999999877763
No 158
>KOG0384|consensus
Probab=97.99 E-value=2.4e-05 Score=81.39 Aligned_cols=93 Identities=23% Similarity=0.343 Sum_probs=83.0
Q ss_pred HHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC---CCcEEEecccccccCCc
Q psy7790 271 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG---QKDVMVATDVASKGLDF 347 (367)
Q Consensus 271 ~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~vLVaTd~~~rGlDi 347 (367)
..|+-.|...+.+||||..-..+.+-|++||..++++.--|-|.+..+-|..++.+|..- ....|+||-+.+.||++
T Consensus 689 DKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 689 DKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred HHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc
Confidence 344445556678999999999999999999999999999999999999999999999763 45689999999999999
Q ss_pred CCCCEEEEcCCCCCcc
Q psy7790 348 EEIKHVINTEAKIKKR 363 (367)
Q Consensus 348 ~~v~~VI~yd~P~~~~ 363 (367)
-..+.||.||-=+||.
T Consensus 769 atADTVIIFDSDWNPQ 784 (1373)
T KOG0384|consen 769 ATADTVIIFDSDWNPQ 784 (1373)
T ss_pred cccceEEEeCCCCCcc
Confidence 9999999999888875
No 159
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.97 E-value=6.7e-05 Score=77.19 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=72.2
Q ss_pred HHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCHHHHHHHHHHHhcCCC-cEEEecccccccCCc
Q psy7790 270 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQEERTRSVESFRKGQK-DVMVATDVASKGLDF 347 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~-~vLVaTd~~~rGlDi 347 (367)
..++..++...++++|||++|.+....++..|...... ....+|.. .+...++.|+.+.- .++|+|..++.|+|+
T Consensus 468 ~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 468 AAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 45566667777889999999999999999999876653 34445553 34588899988766 899999999999999
Q ss_pred CCC--CEEEEcCCCCC
Q psy7790 348 EEI--KHVINTEAKIK 361 (367)
Q Consensus 348 ~~v--~~VI~yd~P~~ 361 (367)
++= ..||..++|.-
T Consensus 545 ~g~~l~~vvI~~lPfp 560 (654)
T COG1199 545 PGDALRLVVIVGLPFP 560 (654)
T ss_pred CCCCeeEEEEEecCCC
Confidence 865 89999999975
No 160
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.95 E-value=9.7e-05 Score=76.59 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCcc
Q psy7790 172 KLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKI 251 (367)
Q Consensus 172 ~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~ 251 (367)
.+++.+.+.|.+.||..|+++|..+||.++. ++-+++.+.|-+.+...+.-..+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~------------G~nvvv~apTGSGKTla~~LPiL~------------- 74 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHA------------GRHVVVATGTASGKSLAYQLPVLS------------- 74 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHC------------CCCEEEECCCCCcHHHHHHHHHHH-------------
Confidence 4789999999999999999999999998876 566888888988776655433221
Q ss_pred CCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHHHHHHh
Q psy7790 252 MPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK---GVEAVAIHGGKDQEERTRSVESFR 328 (367)
Q Consensus 252 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~ 328 (367)
.++...+.++||.++|++.+.++...|+.. ++++..++|+.+..+|..+.
T Consensus 75 -----------------------~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~---- 127 (742)
T TIGR03817 75 -----------------------ALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAR---- 127 (742)
T ss_pred -----------------------HHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHh----
Confidence 111112346899999999999999988765 67899999999988774332
Q ss_pred cCCCcEEEecc-ccccc---------CCcCCCCEEEEcCC
Q psy7790 329 KGQKDVMVATD-VASKG---------LDFEEIKHVINTEA 358 (367)
Q Consensus 329 ~g~~~vLVaTd-~~~rG---------lDi~~v~~VI~yd~ 358 (367)
...+|+|+|+ .+..+ ..+.++++||.-++
T Consensus 128 -~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 128 -EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred -cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 3478999996 33222 12678999987654
No 161
>KOG0953|consensus
Probab=97.95 E-value=3e-05 Score=74.56 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=70.9
Q ss_pred HHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCHHHHHHHHHHHhc--CCCcEEEecccccccCCc
Q psy7790 272 YLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQEERTRSVESFRK--GQKDVMVATDVASKGLDF 347 (367)
Q Consensus 272 ~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~--g~~~vLVaTd~~~rGlDi 347 (367)
.++.-+..-. +-|||=+ |+++.-.+...+...|.. |++++|+++++.|..--..|.+ ++++||||||+.++||++
T Consensus 347 ~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 347 TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 3444444433 4466544 678888888888888765 9999999999999999999988 899999999999999999
Q ss_pred CCCCEEEEcCCC
Q psy7790 348 EEIKHVINTEAK 359 (367)
Q Consensus 348 ~~v~~VI~yd~P 359 (367)
+|+.||.|++=
T Consensus 426 -~IrRiiF~sl~ 436 (700)
T KOG0953|consen 426 -NIRRIIFYSLI 436 (700)
T ss_pred -ceeEEEEeecc
Confidence 69999999875
No 162
>KOG0346|consensus
Probab=97.93 E-value=1.8e-05 Score=74.07 Aligned_cols=130 Identities=20% Similarity=0.231 Sum_probs=89.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
..+|+++++..||++++.+.||..||-||..+||.+|. +.-++.-..|-+......+-..+..-..-.
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLE------------gKDvvarArTGSGKT~AYliPllqkll~~k 85 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALE------------GKDVVARARTGSGKTAAYLIPLLQKLLAEK 85 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhc------------CcceeeeeccCCCchHHHHHHHHHHHHHhh
Confidence 36899999999999999999999999999999999997 334555555544443332221111000000
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC------CCeEEEEecCCCHH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK------GVEAVAIHGGKDQE 318 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~ 318 (367)
. +. -.+.++.++|.++|++-|..++..+... .+.+.-+.++|+..
T Consensus 86 ~-------t~----------------------~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sds 136 (569)
T KOG0346|consen 86 K-------TN----------------------DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDS 136 (569)
T ss_pred h-------cc----------------------cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchH
Confidence 0 00 0112456899999999999999888543 56777788888865
Q ss_pred HHHHHHHHHhcCCCcEEEecc
Q psy7790 319 ERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd 339 (367)
.-. .+..+.-.|+|+|+
T Consensus 137 v~~----~~L~d~pdIvV~TP 153 (569)
T KOG0346|consen 137 VNS----VALMDLPDIVVATP 153 (569)
T ss_pred HHH----HHHccCCCeEEeCh
Confidence 544 45578899999999
No 163
>KOG0337|consensus
Probab=97.92 E-value=7.7e-05 Score=69.52 Aligned_cols=139 Identities=24% Similarity=0.315 Sum_probs=98.9
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
..+|..||+...+++++.+.||..|||||...+|.+|. .+-++.++-|-+.....+.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe------------~~dvv~martgsgktaaf~----------- 76 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILE------------GRDVVGMARTGSGKTAAFL----------- 76 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceee------------ccccceeeecCCcchhhHH-----------
Confidence 45788999999999999999999999999999999997 4555555555433322211
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHh---hcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQ 317 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~ 317 (367)
.-.++.|. +.+-+++|-.+|++.+......++.. +..+.++.|+-+.
T Consensus 77 --------------------------ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~ 130 (529)
T KOG0337|consen 77 --------------------------IPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSI 130 (529)
T ss_pred --------------------------HHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchH
Confidence 11112222 22457899999999998888888766 4567766666555
Q ss_pred HHHHHHHHHHhcCCCcEEEecc------cccccCCcCCCCEEEEc
Q psy7790 318 EERTRSVESFRKGQKDVMVATD------VASKGLDFEEIKHVINT 356 (367)
Q Consensus 318 ~~R~~~~~~F~~g~~~vLVaTd------~~~rGlDi~~v~~VI~y 356 (367)
++....+ ++.-+|++||+ .+.+-+++..|.+||..
T Consensus 131 eeqf~~l----~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 131 EEQFILL----NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred HHHHHHh----ccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 5544444 45789999999 34456788899999854
No 164
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.91 E-value=9.5e-05 Score=74.56 Aligned_cols=75 Identities=20% Similarity=0.413 Sum_probs=59.8
Q ss_pred CCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCCHHHHHHHHHHHhcCC--CcEEEecccccccCCcCCCCEEE
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKDQEERTRSVESFRKGQ--KDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
++|||||.+...|+++.+.|... |--|..+.|+-.+. ...+..|...+ -.|.|+.|.+..|+|+|.|.++|
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 58999999999999999999654 45578888885544 34567776633 35899999999999999999998
Q ss_pred EcCC
Q psy7790 355 NTEA 358 (367)
Q Consensus 355 ~yd~ 358 (367)
.+-.
T Consensus 505 F~r~ 508 (875)
T COG4096 505 FDRK 508 (875)
T ss_pred ehhh
Confidence 7654
No 165
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.88 E-value=0.00031 Score=70.76 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcEEEeccccccc
Q psy7790 269 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDVMVATDVASKG 344 (367)
Q Consensus 269 k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vLVaTd~~~rG 344 (367)
-...+..++...+++++|.+.|+...+.+++.|...---...+.|..+ .|...+++|+.. ...||++|+.+.-|
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 346677777888999999999999999999999654223345566432 456788999984 78999999999999
Q ss_pred CCc----------CCCCEEEEcCCCCCc
Q psy7790 345 LDF----------EEIKHVINTEAKIKK 362 (367)
Q Consensus 345 lDi----------~~v~~VI~yd~P~~~ 362 (367)
+|+ ..+++||..-+|..+
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCc
Confidence 999 359999999999654
No 166
>PTZ00424 helicase 45; Provisional
Probab=97.75 E-value=0.00048 Score=66.50 Aligned_cols=142 Identities=26% Similarity=0.357 Sum_probs=100.1
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 164 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 164 ~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
...+|.+++++..+++.+.+.||..|+++|.++|+.++. ..-+++.+.|-+.+.....-..+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~------------~~d~ii~apTGsGKT~~~~l~~l------ 87 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILD------------GYDTIGQAQSGTGKTATFVIAAL------ 87 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHHHHHHHHHH------
Confidence 356788999999999999999999999999999998876 34466666776665443221111
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh--hcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQ 317 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~--~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~ 317 (367)
..+. ..+.++||++++++.+.++...+... ++.+..+.|+...
T Consensus 88 -------------------------------~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~ 136 (401)
T PTZ00424 88 -------------------------------QLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVV 136 (401)
T ss_pred -------------------------------HHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCH
Confidence 1111 12346899999999999888877554 5678888888775
Q ss_pred HHHHHHHHHHhcCCCcEEEeccc------ccccCCcCCCCEEEEcCC
Q psy7790 318 EERTRSVESFRKGQKDVMVATDV------ASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 318 ~~R~~~~~~F~~g~~~vLVaTd~------~~rGlDi~~v~~VI~yd~ 358 (367)
.+. ++.+..+ .+|+|+|.- ..+.+.+.++++||.-++
T Consensus 137 ~~~---~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 137 RDD---INKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred HHH---HHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 443 3344444 689999982 124567888999887654
No 167
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.71 E-value=0.00013 Score=62.15 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=90.4
Q ss_pred cChHHHhHHHHHHHHHHhHhc-ccccccccccCCccc--cCcccccccC----CccccCCCHHHHHHHHh----ccC---
Q psy7790 88 ESAKEKQLKEEEKILRSVAET-KALMGVAELAKGIQY--NDPIKTSWRA----PRCILSLPDQVHDIIRR----NLR--- 153 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g-~d~~~~a~TgsGKT~--~~p~~~~~~~----~~~i~~~~~~~~~~~~~----~~~--- 153 (367)
.++.+. |.++++.+..+ +.++..++||+|||+ ..++...+.. ...+...+.....++.. .+.
T Consensus 7 ~~~~~~----Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 7 EPLRPY----QKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCHH----HHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 344555 99999999999 999999999999993 3333333222 23344554444443332 221
Q ss_pred -e---EEecCCCCccc---cc---cccCCCCHHHHHHHHHcCCC-------CCChhhhhcccc-cchHHHHHHHhhccCC
Q psy7790 154 -I---LVEGDDVPPAC---CS---FRLMKLPESLVRALEAKGIK-------KPTPIQVQGIPA-ALSEDVRTIFSFFRGQ 215 (367)
Q Consensus 154 -i---~~~g~~~~~~~---~~---f~~l~~p~~ll~~l~~~g~~-------~pt~iQ~~~ip~-~l~~~v~~Il~~l~~~ 215 (367)
. ..++....... .. ---+.+++.+.+.+...... ...+.| .++. .....+..++..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h--~~~~~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAH--RLLDGGFGDQLEKLLKLLPKN 160 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHH--HHhcCCcHHHHHHHHHhCCcc
Confidence 1 11222110000 00 01146777777777654311 011111 1111 2335666677777778
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCC
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGR 247 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~ 247 (367)
.+++++|||.+..+...+..++.+...+....
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 99999999999999999999888877777664
No 168
>KOG1123|consensus
Probab=97.70 E-value=0.00073 Score=64.55 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=62.6
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEEecccccccCCcCCC
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVaTd~~~rGlDi~~v 350 (367)
+|+++-...+.++|||..+.-...+.+-.| | --.++|..+|.+|.++++.|+.+ ++.-+.-+-|.-..+|+|..
T Consensus 534 fLI~~HE~RgDKiIVFsDnvfALk~YAikl---~--KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEA 608 (776)
T KOG1123|consen 534 FLIKFHERRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEA 608 (776)
T ss_pred HHHHHHHhcCCeEEEEeccHHHHHHHHHHc---C--CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcc
Confidence 444444456778999998776655555444 3 34689999999999999999986 46677777888899999999
Q ss_pred CEEEEcC
Q psy7790 351 KHVINTE 357 (367)
Q Consensus 351 ~~VI~yd 357 (367)
++.|+..
T Consensus 609 nvLIQIS 615 (776)
T KOG1123|consen 609 NVLIQIS 615 (776)
T ss_pred cEEEEEc
Confidence 9999854
No 169
>KOG0343|consensus
Probab=97.66 E-value=4.8e-05 Score=73.13 Aligned_cols=146 Identities=22% Similarity=0.195 Sum_probs=97.6
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEE
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~ 242 (367)
..+..|.++.+..+.+..|+..+|..||.||..+||..|. ++-++..+-|-+.....|+-..+..-+.
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~------------G~DvlGAAkTGSGKTLAFlvPvlE~L~r 133 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQ------------GHDVLGAAKTGSGKTLAFLVPVLEALYR 133 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhcc------------CcccccccccCCCceeeehHHHHHHHHH
Confidence 3556788999999999999999999999999999999997 4555554444433322221111100000
Q ss_pred EEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHH
Q psy7790 243 INVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQE 318 (367)
Q Consensus 243 i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~ 318 (367)
.++-...+-.+||..+|++.|-.+.+.|.. ++++++.+-||.+..
T Consensus 134 -------------------------------~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k 182 (758)
T KOG0343|consen 134 -------------------------------LKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK 182 (758)
T ss_pred -------------------------------cCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH
Confidence 000011233699999999999999999954 478999999997643
Q ss_pred HHHHHHHHHhcCCCcEEEeccc-------ccccCCcCCCCEEEEc
Q psy7790 319 ERTRSVESFRKGQKDVMVATDV-------ASKGLDFEEIKHVINT 356 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd~-------~~rGlDi~~v~~VI~y 356 (367)
.+.-|-.++.|||||+- -.-+++-++++..|.-
T Consensus 183 -----~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 183 -----FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred -----HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 33445568999999991 1135555666666543
No 170
>KOG0392|consensus
Probab=97.63 E-value=0.00033 Score=73.10 Aligned_cols=96 Identities=25% Similarity=0.392 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHhh-----------------cCCCeEEeeccHHHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHHHHH
Q psy7790 267 EAKIVYLLECLQK-----------------TEPPVLIFAEKKQDVDAIHEYLLLK---GVEAVAIHGGKDQEERTRSVES 326 (367)
Q Consensus 267 ~~k~~~l~~~l~~-----------------~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~ 326 (367)
.-|+.+|-++|.. .+.++||||.-+.+.+-+..-|... .+.-.-+-|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 4577788887754 1357999999999999999988665 3444578999999999999999
Q ss_pred HhcC-CCcEE-EecccccccCCcCCCCEEEEcCCCCCc
Q psy7790 327 FRKG-QKDVM-VATDVASKGLDFEEIKHVINTEAKIKK 362 (367)
Q Consensus 327 F~~g-~~~vL-VaTd~~~rGlDi~~v~~VI~yd~P~~~ 362 (367)
|.++ .++|| ++|.|.+.|+++-+.+.||.++=-+||
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999 77875 788899999999999999999877765
No 171
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.62 E-value=0.00053 Score=70.45 Aligned_cols=127 Identities=14% Similarity=0.180 Sum_probs=83.5
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
+....+|.|...+...+...|--+-+.|....+.. .... .-.++.....|...+++.+.. .+.|+||-|.|.+
T Consensus 360 ~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~---R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe 435 (870)
T CHL00122 360 PKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPML---RKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIE 435 (870)
T ss_pred chhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcc---ceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHH
Confidence 35667888887655555444433322222222111 1111 224456667787777766543 4668999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCC-CHHHHHHHHHHHhcCC-CcEEEecccccccCCcC
Q psy7790 293 DVDAIHEYLLLKGVEAVAIHGGK-DQEERTRSVESFRKGQ-KDVMVATDVASKGLDFE 348 (367)
Q Consensus 293 ~~~~l~~~L~~~~~~~~~lhg~~-~~~~R~~~~~~F~~g~-~~vLVaTd~~~rGlDi~ 348 (367)
..+.++..|...|++...+++.- ....-..++.. .|+ ..|.|||+.|+||-||.
T Consensus 436 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 436 KSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 99999999999999999999973 22222334433 454 46999999999999984
No 172
>KOG0348|consensus
Probab=97.59 E-value=0.0005 Score=66.10 Aligned_cols=146 Identities=22% Similarity=0.292 Sum_probs=93.6
Q ss_pred ccccccCCCCHHHHHHHHH-cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 165 CCSFRLMKLPESLVRALEA-KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~-~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
-..|..+|+..-+.++|.. +++..||.+|.++||.++. ++-.++-|-|-+......+-.....-.
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~------------grD~lV~aQTGSGKTLAYllPiVq~Lq-- 200 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE------------GRDALVRAQTGSGKTLAYLLPIVQSLQ-- 200 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhc------------CcceEEEcCCCCcccHHHHHHHHHHHH--
Confidence 3468889999999999975 5999999999999999996 566666666665554333222110000
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh-hcCCCeEEeeccHHHHHHHHHHHHhCCC------eEEEEecCCC
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ-KTEPPVLIFAEKKQDVDAIHEYLLLKGV------EAVAIHGGKD 316 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~lhg~~~ 316 (367)
. ...+ ++ ..+.-+||.++|++.|-.+++.+....- ++..+-|..
T Consensus 201 ------~--m~~k--------------------i~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEk- 251 (708)
T KOG0348|consen 201 ------A--MEPK--------------------IQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEK- 251 (708)
T ss_pred ------h--cCcc--------------------ccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccc-
Confidence 0 0000 11 1233489999999999999998876532 223333332
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccc-------ccccCCcCCCCEEEEcC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATDV-------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd~-------~~rGlDi~~v~~VI~yd 357 (367)
|..--.++|.| +.|||+|+- --.-|++..++|||..+
T Consensus 252 ---kKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 252 ---KKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred ---cccHHHHHhcC-ceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 22223355566 899999991 11457778888888654
No 173
>PRK00254 ski2-like helicase; Provisional
Probab=97.58 E-value=0.00088 Score=69.69 Aligned_cols=137 Identities=16% Similarity=0.225 Sum_probs=97.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.|+++++|..+.+.+.+.||..|+|+|.++++..+. .+..+++.+.|-+.+..-..-.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~-----------~g~nvlv~apTGsGKT~~~~l~----------- 59 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVL-----------EGKNLVLAIPTASGKTLVAEIV----------- 59 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHh-----------CCCcEEEECCCCcHHHHHHHHH-----------
Confidence 467889999999999999999999999999875322 3566777788876664322111
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEecCCCHHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHGGKDQEERTRS 323 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~ 323 (367)
+++.+...++++|+-+|++..+.+.+..+.. .|+++..++|+.+...+
T Consensus 60 --------------------------il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--- 110 (720)
T PRK00254 60 --------------------------MVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--- 110 (720)
T ss_pred --------------------------HHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---
Confidence 1111122345789999999999988877753 48999999999875432
Q ss_pred HHHHhcCCCcEEEecc-----cccc-cCCcCCCCEEEEcCC
Q psy7790 324 VESFRKGQKDVMVATD-----VASK-GLDFEEIKHVINTEA 358 (367)
Q Consensus 324 ~~~F~~g~~~vLVaTd-----~~~r-GlDi~~v~~VI~yd~ 358 (367)
+ .++.+|+|+|+ .+.+ ...+.++++||--++
T Consensus 111 ---~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~ 147 (720)
T PRK00254 111 ---W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEI 147 (720)
T ss_pred ---h-hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCc
Confidence 1 25689999996 2222 234678999987665
No 174
>KOG0344|consensus
Probab=97.57 E-value=6.1e-05 Score=72.95 Aligned_cols=166 Identities=22% Similarity=0.310 Sum_probs=109.1
Q ss_pred HHHHHHHhccCeEEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceE
Q psy7790 143 QVHDIIRRNLRILVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQT 218 (367)
Q Consensus 143 ~~~~~~~~~~~i~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~ 218 (367)
+....+|+.+.+.+.|.++++++.+|.. ....++++..+...+|..||++|.+++|.++. .+-+
T Consensus 109 ~~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~------------~r~~ 176 (593)
T KOG0344|consen 109 EKLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLE------------KRDV 176 (593)
T ss_pred cccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhc------------ccce
Confidence 4456677788999999999999999987 57899999999999999999999999999986 2333
Q ss_pred EeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh---hcCCCeEEeeccHHHHH
Q psy7790 219 LLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVD 295 (367)
Q Consensus 219 il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~iVF~~s~~~~~ 295 (367)
+.+--|-......+.-. -+..|...-+ ..+-+++|-.++++-+.
T Consensus 177 lAcapTGsgKtlaf~~P---------------------------------il~~L~~~~~~~~~~gl~a~Il~ptreLa~ 223 (593)
T KOG0344|consen 177 LACAPTGSGKTLAFNLP---------------------------------ILQHLKDLSQEKHKVGLRALILSPTRELAA 223 (593)
T ss_pred EEeccCCCcchhhhhhH---------------------------------HHHHHHHhhcccCccceEEEEecchHHHHH
Confidence 33322222221111100 0001111110 11346899999999999
Q ss_pred HHHHHHHhCC------CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----ccccc---CCcCCCCEEEEc
Q psy7790 296 AIHEYLLLKG------VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VASKG---LDFEEIKHVINT 356 (367)
Q Consensus 296 ~l~~~L~~~~------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~rG---lDi~~v~~VI~y 356 (367)
+++..+.... +.+..++....+.++...+. .-..++||.|+ ++..| +|+.+|.|+|..
T Consensus 224 Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~---~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 224 QIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS---DEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVD 295 (593)
T ss_pred HHHHHHHhcCCCCCCchhhhhcccccchhhccchhH---HHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeec
Confidence 9999987654 34444444443344332222 23468999998 34454 799999998864
No 175
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.56 E-value=0.0012 Score=66.65 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=85.2
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
.....+|.|.......|.+.|--+-+.|....+. ...+ ..-.++.....|...+.+.+.. .+.|+||.|.|.+
T Consensus 363 ~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~---~R~d-~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~ 438 (764)
T PRK12326 363 PTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPN---IRED-EADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVA 438 (764)
T ss_pred chheeecCCChhHHHHHHHHhCCcEEECCCCCCc---eeec-CCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHH
Confidence 4567789998776666655543332222221111 1111 1224556677888887776643 4668999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC-CcEEEecccccccCCcC
Q psy7790 293 DVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ-KDVMVATDVASKGLDFE 348 (367)
Q Consensus 293 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLVaTd~~~rGlDi~ 348 (367)
..+.++..|...|+++..+++.-...+ ..++. ..|+ -.|.|||+.|+||-||.
T Consensus 439 ~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIk 492 (764)
T PRK12326 439 ESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIR 492 (764)
T ss_pred HHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCee
Confidence 999999999999999999998744332 33332 3454 46999999999999986
No 176
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.54 E-value=0.0008 Score=69.24 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=85.6
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
.....+|.|...+...|...|--+-+.|....+.. ..+ ..-.++.....|...+++.+.. .+.|+||-|.|.+
T Consensus 375 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~---R~d-~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe 450 (939)
T PRK12902 375 PKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRR---RQD-WPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVE 450 (939)
T ss_pred chhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCee---eec-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHH
Confidence 45667888887666666555533333332222211 111 1123455667888887766553 4678999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecC-CCHHHHHHHHHHHhcCC-CcEEEecccccccCCcC
Q psy7790 293 DVDAIHEYLLLKGVEAVAIHGG-KDQEERTRSVESFRKGQ-KDVMVATDVASKGLDFE 348 (367)
Q Consensus 293 ~~~~l~~~L~~~~~~~~~lhg~-~~~~~R~~~~~~F~~g~-~~vLVaTd~~~rGlDi~ 348 (367)
..+.++..|...|+++..+++. ...+.-..++.. .|+ ..|-|||+.|+||-||.
T Consensus 451 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 451 KSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9999999999999999999997 333333344433 454 46999999999999974
No 177
>KOG0388|consensus
Probab=97.52 E-value=0.0004 Score=68.82 Aligned_cols=95 Identities=18% Similarity=0.330 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCc-EEEecccccccCCc
Q psy7790 269 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD-VMVATDVASKGLDF 347 (367)
Q Consensus 269 k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~-vLVaTd~~~rGlDi 347 (367)
++..|+..|...+.++|+|+.-.++.+-+..||...++...-+.|.....+|..++++|....+- .|++|-+.+.||++
T Consensus 1032 ~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINL 1111 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINL 1111 (1185)
T ss_pred eHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccc
Confidence 35556666667788999999999999999999999999999999999999999999999997665 57999999999999
Q ss_pred CCCCEEEEcCCCCCcc
Q psy7790 348 EEIKHVINTEAKIKKR 363 (367)
Q Consensus 348 ~~v~~VI~yd~P~~~~ 363 (367)
...+.||.||--++|.
T Consensus 1112 TAADTViFYdSDWNPT 1127 (1185)
T KOG0388|consen 1112 TAADTVIFYDSDWNPT 1127 (1185)
T ss_pred cccceEEEecCCCCcc
Confidence 9999999999888764
No 178
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.52 E-value=0.00078 Score=69.44 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=66.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-ccccCCcCCCCEEEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-ASKGLDFEEIKHVIN 355 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-~~rGlDi~~v~~VI~ 355 (367)
+.+++|.++|+.-|..++..|.. .|+++..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 56799999999999988877754 4799999999999999999999999999999999984 445678899999986
Q ss_pred cC
Q psy7790 356 TE 357 (367)
Q Consensus 356 yd 357 (367)
.+
T Consensus 390 DE 391 (681)
T PRK10917 390 DE 391 (681)
T ss_pred ec
Confidence 54
No 179
>KOG0326|consensus
Probab=97.48 E-value=0.00027 Score=63.76 Aligned_cols=138 Identities=21% Similarity=0.309 Sum_probs=86.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
..|+++.+...|+..+.++||..|+|||...||.++. ..++..-++..-+..-...
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLt-----------------------GrdiLaRaKNGTGKT~a~~- 140 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALT-----------------------GRDILARAKNGTGKTAAYC- 140 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeec-----------------------chhhhhhccCCCCCcccee-
Confidence 4688899999999999999999999999999999987 1112211211111100000
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHH----hCCCeEEEEecCCCHHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLL----LKGVEAVAIHGGKDQEE 319 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~ 319 (367)
++ +++.+.. ..-+++|.++|++-|-.++.... ..|+.+++-.||.+-.+
T Consensus 141 ------------------IP-------~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrD 195 (459)
T KOG0326|consen 141 ------------------IP-------VLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRD 195 (459)
T ss_pred ------------------ch-------hhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCccccc
Confidence 00 0111111 12357889999887766655543 23899999999987544
Q ss_pred HHHHHHHHhcCCCcEEEecc-----cccccC-CcCCCCEEEEc
Q psy7790 320 RTRSVESFRKGQKDVMVATD-----VASKGL-DFEEIKHVINT 356 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd-----~~~rGl-Di~~v~~VI~y 356 (367)
.+++ .++.+.++|+|+ ++.+|+ |+.++...|..
T Consensus 196 --DI~R--l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~D 234 (459)
T KOG0326|consen 196 --DIMR--LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMD 234 (459)
T ss_pred --ceee--ecCceEEEEcCChhHHHHHhcccccchhceEEEec
Confidence 3332 256789999998 455564 45555555543
No 180
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.47 E-value=0.00098 Score=68.17 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=66.4
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc-ccCCcCCCCEEEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS-KGLDFEEIKHVIN 355 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~-rGlDi~~v~~VI~ 355 (367)
+.+++|-++|+.-|..+++.+.. .|+++..+||+++..+|..+++.+.+|+.+|+|+|..+- ..+.+.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 56799999999999988877754 379999999999999999999999999999999998544 4578889999986
Q ss_pred cC
Q psy7790 356 TE 357 (367)
Q Consensus 356 yd 357 (367)
.+
T Consensus 364 DE 365 (630)
T TIGR00643 364 DE 365 (630)
T ss_pred ec
Confidence 54
No 181
>KOG0389|consensus
Probab=97.44 E-value=0.00087 Score=67.26 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=83.1
Q ss_pred hHHHHHHHHH---hhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC--cEEEeccccc
Q psy7790 268 AKIVYLLECL---QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK--DVMVATDVAS 342 (367)
Q Consensus 268 ~k~~~l~~~l---~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~--~vLVaTd~~~ 342 (367)
.|+..|..+| ...+.++|||..-....+-|..+|...++...-+-|.....+|+.++..|-..+- -.|++|-+.+
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 4555554444 4567899999999999999999999999999999999999999999999987653 3689999999
Q ss_pred ccCCcCCCCEEEEcCCCCCcc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~ 363 (367)
-||++-..++||.||+-.||-
T Consensus 841 ~GINLt~An~VIihD~dFNP~ 861 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPY 861 (941)
T ss_pred ceecccccceEEEeecCCCCc
Confidence 999999999999999988763
No 182
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.42 E-value=0.0012 Score=69.73 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-cccccCCcCCCCEEEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-VASKGLDFEEIKHVIN 355 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-~~~rGlDi~~v~~VI~ 355 (367)
+.+++|.++|+..|.+.++.|+. .++++..++|+.+..++.++++.+++|+.+|+|+|. .+.+.+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 46799999999999999988765 367899999999999999999999999999999998 4446788999999987
Q ss_pred cC
Q psy7790 356 TE 357 (367)
Q Consensus 356 yd 357 (367)
.+
T Consensus 580 DE 581 (926)
T TIGR00580 580 DE 581 (926)
T ss_pred ec
Confidence 55
No 183
>PRK02362 ski2-like helicase; Provisional
Probab=97.42 E-value=0.0014 Score=68.37 Aligned_cols=136 Identities=22% Similarity=0.264 Sum_probs=94.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.|+++++|..+++.+.+.||..|+|+|.++++..+. .+.-+++.+.|-+.+..-..-.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~-----------~g~nvlv~APTGSGKTlia~la----------- 59 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLL-----------DGKNLLAAIPTASGKTLIAELA----------- 59 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHh-----------CCCcEEEECCCcchHHHHHHHH-----------
Confidence 477899999999999999999999999999876332 2345555566655543321111
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK---GVEAVAIHGGKDQEERTRS 323 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~ 323 (367)
+++.+. .++++|+.+|++.-|.+.+..+... |+++..++|+.+....
T Consensus 60 --------------------------il~~l~-~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~--- 109 (737)
T PRK02362 60 --------------------------MLKAIA-RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE--- 109 (737)
T ss_pred --------------------------HHHHHh-cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---
Confidence 111111 2567999999999999999888765 8999999999865432
Q ss_pred HHHHhcCCCcEEEecc-----ccccc-CCcCCCCEEEEcCC
Q psy7790 324 VESFRKGQKDVMVATD-----VASKG-LDFEEIKHVINTEA 358 (367)
Q Consensus 324 ~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~VI~yd~ 358 (367)
. -+..+|+|||+ ++..+ .-+.++++||-.++
T Consensus 110 --~--l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~ 146 (737)
T PRK02362 110 --W--LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEV 146 (737)
T ss_pred --c--cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECc
Confidence 1 24678999996 22222 23578888887654
No 184
>PRK14701 reverse gyrase; Provisional
Probab=97.41 E-value=0.0017 Score=72.23 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=84.5
Q ss_pred HHHHHHHH-cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCC
Q psy7790 176 SLVRALEA-KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPS 254 (367)
Q Consensus 176 ~ll~~l~~-~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~ 254 (367)
.+.+.+++ .|| .|+++|..++|.++. ++-+++.+-|=+.+.. +...
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~------------G~d~li~APTGsGKTl-~~~~------------------- 113 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILR------------GKSFSIVAPTGMGKST-FGAF------------------- 113 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHc------------CCCEEEEEcCCCCHHH-HHHH-------------------
Confidence 34455555 688 699999999998886 4556666666655543 1000
Q ss_pred CcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh------CCCeEEEEecCCCHHHHHHHHHHHh
Q psy7790 255 MNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL------KGVEAVAIHGGKDQEERTRSVESFR 328 (367)
Q Consensus 255 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~------~~~~~~~lhg~~~~~~R~~~~~~F~ 328 (367)
+.-.+...+.++||.+||++-+.+++..|+. .++.+..+||+++..++..+++.++
T Consensus 114 ------------------~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~ 175 (1638)
T PRK14701 114 ------------------IALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIE 175 (1638)
T ss_pred ------------------HHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHh
Confidence 0000111245799999999999999999876 2578899999999999999999999
Q ss_pred cCCCcEEEeccc
Q psy7790 329 KGQKDVMVATDV 340 (367)
Q Consensus 329 ~g~~~vLVaTd~ 340 (367)
+|..+|||+|+-
T Consensus 176 ~g~~dILV~TPg 187 (1638)
T PRK14701 176 NGDFDILVTTAQ 187 (1638)
T ss_pred cCCCCEEEECCc
Confidence 999999999983
No 185
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.40 E-value=0.001 Score=70.72 Aligned_cols=97 Identities=22% Similarity=0.322 Sum_probs=83.9
Q ss_pred hHHHHHHHHH----hhcCC--CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEecc
Q psy7790 268 AKIVYLLECL----QKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVATD 339 (367)
Q Consensus 268 ~k~~~l~~~l----~~~~~--~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVaTd 339 (367)
.|...+.+++ ...+. +++||+.-....+-+..+|...++....++|+++...|...++.|.++ ..-++++|-
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5566665555 23455 899999999999999999999999999999999999999999999996 345678888
Q ss_pred cccccCCcCCCCEEEEcCCCCCccc
Q psy7790 340 VASKGLDFEEIKHVINTEAKIKKRE 364 (367)
Q Consensus 340 ~~~rGlDi~~v~~VI~yd~P~~~~~ 364 (367)
+.+.|++.-..++||+||..+++..
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~ 796 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAV 796 (866)
T ss_pred ccccceeecccceEEEeccccChHH
Confidence 9999999999999999999998864
No 186
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.37 E-value=0.0008 Score=69.55 Aligned_cols=126 Identities=15% Similarity=0.254 Sum_probs=86.1
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
.....+|.|...+...|...|--+-+.|....+.. .... .-.++.....|...+++-+.. .+.|+||-|.|.+
T Consensus 385 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~---R~D~-~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLA---RKDF-NDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred chhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcc---cccC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 45667889987766666555543333332222211 1111 224566778888888776653 4678999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEEecccccccCCcC
Q psy7790 293 DVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMVATDVASKGLDFE 348 (367)
Q Consensus 293 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVaTd~~~rGlDi~ 348 (367)
..+.|+..|...|++.-.+++.-...+ ..++. ..| ...|.|||+.|+||-||.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIk 514 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDIL 514 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEe
Confidence 999999999999999988888744332 22332 356 456999999999999984
No 187
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.0025 Score=62.88 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=94.0
Q ss_pred HcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEE
Q psy7790 183 AKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262 (367)
Q Consensus 183 ~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~ 262 (367)
..||..|+|+|.++|+.++. .+-+++.+.|=+.+...+.-.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~------------g~dvlv~apTGsGKTl~y~lp--------------------------- 46 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLL------------GRDCFVVMPTGGGKSLCYQLP--------------------------- 46 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHc------------CCCEEEEcCCCCcHhHHHHHH---------------------------
Confidence 35899999999999998886 345777777766654322211
Q ss_pred EechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc-
Q psy7790 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA- 341 (367)
Q Consensus 263 ~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~- 341 (367)
.+. .++.+||.+++++-+......|...|+.+..++|+.+..++..++..+..|+.++|++|+-.
T Consensus 47 -------------~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l 112 (470)
T TIGR00614 47 -------------ALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKC 112 (470)
T ss_pred -------------HHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 111 14568999999999999999999999999999999999999999999999999999999832
Q ss_pred cc------cC-CcCCCCEEEEcCC
Q psy7790 342 SK------GL-DFEEIKHVINTEA 358 (367)
Q Consensus 342 ~r------Gl-Di~~v~~VI~yd~ 358 (367)
.. .+ ...++.+||..++
T Consensus 113 ~~~~~~~~~l~~~~~i~~iViDEa 136 (470)
T TIGR00614 113 SASNRLLQTLEERKGITLIAVDEA 136 (470)
T ss_pred cCchhHHHHHHhcCCcCEEEEeCC
Confidence 11 22 4567777776554
No 188
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.31 E-value=0.0032 Score=68.16 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-cccccCCcCCCCEEEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-VASKGLDFEEIKHVIN 355 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-~~~rGlDi~~v~~VI~ 355 (367)
+.+++|.|+|+..|.+++..|... ++.+..++|+.+..++..+++.+++|..+|||+|. .+...+.+.++.+||.
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 567999999999999999888642 57888999999999999999999999999999997 4445677889998886
Q ss_pred cC
Q psy7790 356 TE 357 (367)
Q Consensus 356 yd 357 (367)
-+
T Consensus 729 DE 730 (1147)
T PRK10689 729 DE 730 (1147)
T ss_pred ec
Confidence 43
No 189
>KOG0328|consensus
Probab=97.20 E-value=0.01 Score=52.93 Aligned_cols=176 Identities=22% Similarity=0.285 Sum_probs=102.2
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchH-------------------HHHHHHhhccCCceEEeec
Q psy7790 162 PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSE-------------------DVRTIFSFFRGQRQTLLFS 222 (367)
Q Consensus 162 ~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~-------------------~v~~Il~~l~~~~Q~il~S 222 (367)
-..+.+|.+||+...+++.+...||..|+.||..++|.++.. .+...++.-.+..|.+++|
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lils 102 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILS 102 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEec
Confidence 457789999999999999999999999999999999999870 1111111112346888888
Q ss_pred CCCcH--HHHHHHHHhcCCCEEEEe----CCCCc--cCCCCcceEEEEEechhhHHHHHHH--HHhhcCCCeEEeeccHH
Q psy7790 223 ATMPK--KIQNFARSALVKPITINV----GRAGK--IMPSMNVVQEVEYVKQEAKIVYLLE--CLQKTEPPVLIFAEKKQ 292 (367)
Q Consensus 223 AT~~~--~v~~l~~~~l~~~~~i~~----~~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~--~l~~~~~~~iVF~~s~~ 292 (367)
-|=-- .+.+.+ ..+.++.-|.+ +..+. .......-++++.-. ..+...+++ .|+..+-+.||.-..-+
T Consensus 103 PTRELa~Qi~~vi-~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGt-PGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 103 PTRELAVQIQKVI-LALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGT-PGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred ChHHHHHHHHHHH-HHhcccccceEEEEecCCccchhhhhhcccceEeeCC-CchHHHHHHhccccccceeEEEeccHHH
Confidence 77311 122222 13333333222 11110 000011222222222 222222222 22333456777765543
Q ss_pred HH-----HHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 293 DV-----DAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 293 ~~-----~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
.. +.++..++.. |..++.+.+.+++ +-.+..+.|....+++||--|-
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~-eilemt~kfmtdpvrilvkrde 234 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPH-EILEMTEKFMTDPVRILVKRDE 234 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcH-HHHHHHHHhcCCceeEEEecCC
Confidence 32 3444444433 6788888888875 4577888999999999998773
No 190
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.11 E-value=0.0048 Score=67.04 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCC
Q psy7790 175 ESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPS 254 (367)
Q Consensus 175 ~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~ 254 (367)
.++.+...+.....|+++|..++|.++. ++-+++.+.|-+.+.. ++..
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~------------G~d~vi~ApTGsGKT~-f~l~------------------- 112 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLR------------GDSFAIIAPTGVGKTT-FGLA------------------- 112 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhC------------CCeEEEECCCCCCHHH-HHHH-------------------
Confidence 3444555554555799999999888775 4556666777655542 1110
Q ss_pred CcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CCeE---EEEecCCCHHHHHHHHHHH
Q psy7790 255 MNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GVEA---VAIHGGKDQEERTRSVESF 327 (367)
Q Consensus 255 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~---~~lhg~~~~~~R~~~~~~F 327 (367)
+...+...++++||.+||++-+.++++.|... |+.+ ..+||+++..+|...++.+
T Consensus 113 ------------------~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l 174 (1171)
T TIGR01054 113 ------------------MSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERI 174 (1171)
T ss_pred ------------------HHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHH
Confidence 00111223567999999999999998888653 4443 4689999999999999999
Q ss_pred hcCCCcEEEeccccc-cc---CCcCCCCEEEEcCC
Q psy7790 328 RKGQKDVMVATDVAS-KG---LDFEEIKHVINTEA 358 (367)
Q Consensus 328 ~~g~~~vLVaTd~~~-rG---lDi~~v~~VI~yd~ 358 (367)
++|..+|||+|+-.- +. +.. ++++||.-++
T Consensus 175 ~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 175 ENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred hcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 999999999998321 11 111 6777776553
No 191
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.07 E-value=0.0082 Score=61.38 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=53.0
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
+..+-||++|...++.+++..+..+.++..++|.-+..+. +.| ++++|++.|.+..-|++|...
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchh
Confidence 4567799999999999999999999999999987665532 223 578999999999999999755
No 192
>KOG1000|consensus
Probab=97.05 E-value=0.0032 Score=60.26 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhhc-------CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC-CcE-EEec
Q psy7790 268 AKIVYLLECLQKT-------EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ-KDV-MVAT 338 (367)
Q Consensus 268 ~k~~~l~~~l~~~-------~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~v-LVaT 338 (367)
.|+..+.++|..+ +.+.+|||.-....+.|...+..+++...-+.|..+..+|.-..+.|+.++ +.| +++-
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 3444555555442 346999999999999999999999999999999999999999999999874 443 6777
Q ss_pred ccccccCCcCCCCEEEEcCCCCCcc
Q psy7790 339 DVASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 339 d~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
.+++.||++...+.||..++|+||-
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred eecccceeeeccceEEEEEecCCCc
Confidence 7899999999999999999999974
No 193
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.02 E-value=0.0056 Score=63.11 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=67.6
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
.+.++||.++++..+.++.+.|+. .|..+..+||+++..+|.+++.++.+|..+|+|+|.-+. -+.+.++.+||..+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 366899999999999999999976 488999999999999999999999999999999997433 356788999997763
No 194
>KOG4284|consensus
Probab=97.00 E-value=0.0025 Score=62.87 Aligned_cols=144 Identities=19% Similarity=0.284 Sum_probs=96.1
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 162 PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 162 ~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
+.....|+.+.+-..++..|+..+|..||+||..+||+++. .+.-|++.-.+-..|++||--
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~-kmDliVQaKSGTGKTlVfsv~----------------- 82 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFS-KMDLIVQAKSGTGKTLVFSVL----------------- 82 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhc-ccceEEEecCCCCceEEEEee-----------------
Confidence 45667889999999999999999999999999999999985 111122211222233333211
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh-----CCCeEEEEecCCC
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL-----KGVEAVAIHGGKD 316 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~-----~~~~~~~lhg~~~ 316 (367)
.+..... .....+.+|.++|++-+..|...+.. .|++|.+|-||.+
T Consensus 83 --av~sl~~---------------------------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~ 133 (980)
T KOG4284|consen 83 --AVESLDS---------------------------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTA 133 (980)
T ss_pred --eehhcCc---------------------------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCch
Confidence 1111000 11134578999999999988888854 3789999999987
Q ss_pred HHHHHHHHHHHhcCCCcEEEecc-----ccc-ccCCcCCCCEEEEcC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATD-----VAS-KGLDFEEIKHVINTE 357 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd-----~~~-rGlDi~~v~~VI~yd 357 (367)
...-. -+-.+++|+|.|+ +.. +-+|...|++.|.-.
T Consensus 134 ~~~d~-----~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 134 HKLDL-----IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred hhhhh-----hhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 55432 2334567999999 222 457888888877654
No 195
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.00 E-value=0.0078 Score=61.25 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=90.3
Q ss_pred cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEE
Q psy7790 184 KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263 (367)
Q Consensus 184 ~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~ 263 (367)
.||..++++|.++|+.++. +.-+++...|-..+.....-.
T Consensus 9 fg~~~fr~~Q~~~i~~il~------------g~dvlv~~PTG~GKTl~y~lp---------------------------- 48 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLD------------GRDVLVVMPTGGGKSLCYQVP---------------------------- 48 (591)
T ss_pred cCCCCCCHHHHHHHHHHHc------------CCCEEEEcCCCccHhHHHHHH----------------------------
Confidence 6899999999999988876 345666666665543322111
Q ss_pred echhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc--
Q psy7790 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA-- 341 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~-- 341 (367)
.+. ..+.+||.+|++.-+......|+..|+.+..+||+++..++..++..+..|..++|+.|+-.
T Consensus 49 ------------al~-~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~ 115 (591)
T TIGR01389 49 ------------ALL-LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLE 115 (591)
T ss_pred ------------HHH-cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhc
Confidence 111 13468899999999998889999999999999999999999999999999999999988621
Q ss_pred ----cccCCcCCCCEEEEcC
Q psy7790 342 ----SKGLDFEEIKHVINTE 357 (367)
Q Consensus 342 ----~rGlDi~~v~~VI~yd 357 (367)
-+-+...++.+||..+
T Consensus 116 ~~~~~~~l~~~~l~~iViDE 135 (591)
T TIGR01389 116 QDYFLNMLQRIPIALVAVDE 135 (591)
T ss_pred ChHHHHHHhcCCCCEEEEeC
Confidence 1223445677776543
No 196
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.00 E-value=0.0056 Score=64.05 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=91.9
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQD 293 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~ 293 (367)
....+|.|...+...|...|--+-+.|....+.. ..+ ..-.++.....|..++++.+.. .+.|+||-|.|.+.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~---R~D-~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIA---RKD-KEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcc---eec-CCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHH
Confidence 4556888887766666555543333332222211 111 1234556677888888776654 46789999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC-CcEEEecccccccCCcC--------CCCEEEEcCCCCC
Q psy7790 294 VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ-KDVMVATDVASKGLDFE--------EIKHVINTEAKIK 361 (367)
Q Consensus 294 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLVaTd~~~rGlDi~--------~v~~VI~yd~P~~ 361 (367)
.+.|+..|...|++.-.+++.....+-.-+- ..|+ ..|-|||+.|+||-||. +==|||--..|.|
T Consensus 641 SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheS 714 (1112)
T PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHES 714 (1112)
T ss_pred HHHHHHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCc
Confidence 9999999999999988888875544433222 2343 46899999999999996 2236776666554
No 197
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.87 E-value=0.0083 Score=59.62 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=67.7
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcC
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd 357 (367)
..+.++||.++++..+.+++..|+.. |..+..+||+++..+|.+++.+.++|+.+|+|+|..+- -+-+.++.+||..+
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEEC
Confidence 34668999999999999999999754 78899999999999999999999999999999998543 35678889998766
Q ss_pred C
Q psy7790 358 A 358 (367)
Q Consensus 358 ~ 358 (367)
.
T Consensus 102 e 102 (505)
T TIGR00595 102 E 102 (505)
T ss_pred C
Confidence 4
No 198
>KOG0342|consensus
Probab=96.78 E-value=0.0087 Score=57.23 Aligned_cols=127 Identities=19% Similarity=0.276 Sum_probs=80.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
..|....+....+.++..+||...|++|...||.+|... ..+...-.+...|+.| +-+.++.+.+.-.
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAF---LiPaie~l~k~~~-------- 149 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAF---LLPAIELLRKLKF-------- 149 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeee---hhHHHHHHHhccc--------
Confidence 346667899999999999999999999999999998722 1111111122233322 1222222221100
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHH----hC-CCeEEEEecCCCHHHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLL----LK-GVEAVAIHGGKDQEER 320 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~----~~-~~~~~~lhg~~~~~~R 320 (367)
-...+-.+||-|+|++-+-+++..++ .+ ++.+..+-||-. |
T Consensus 150 -------------------------------~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~---~ 195 (543)
T KOG0342|consen 150 -------------------------------KPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNN---F 195 (543)
T ss_pred -------------------------------CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCcc---c
Confidence 00113358999999998887776653 34 778888888855 3
Q ss_pred HHHHHHHhcCCCcEEEecc
Q psy7790 321 TRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd 339 (367)
..-.++... .+++||||+
T Consensus 196 ~~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 196 SVEADKLVK-GCNILIATP 213 (543)
T ss_pred hHHHHHhhc-cccEEEeCC
Confidence 333344455 799999999
No 199
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=96.74 E-value=0.021 Score=58.29 Aligned_cols=110 Identities=22% Similarity=0.228 Sum_probs=85.6
Q ss_pred HHHHHHH-cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCC
Q psy7790 177 LVRALEA-KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSM 255 (367)
Q Consensus 177 ll~~l~~-~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~ 255 (367)
..+.|++ .||..|+|+|..+++.++. ++-+++.+.|=..+...+.-..
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~------------g~dvlv~apTGsGKTl~y~lpa------------------- 61 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLS------------GRDCLVVMPTGGGKSLCYQIPA------------------- 61 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHc------------CCCEEEEcCCCchHHHHHHHHH-------------------
Confidence 3344443 5999999999999988875 4556777777665543222111
Q ss_pred cceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEE
Q psy7790 256 NVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVM 335 (367)
Q Consensus 256 ~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 335 (367)
+. ..+.+||.++++.-+......|...|+.+..++++.+..++..++..++.|+.++|
T Consensus 62 ---------------------l~-~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il 119 (607)
T PRK11057 62 ---------------------LV-LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLL 119 (607)
T ss_pred ---------------------HH-cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEE
Confidence 11 13468999999999999999999999999999999999999999999999999999
Q ss_pred Eecc
Q psy7790 336 VATD 339 (367)
Q Consensus 336 VaTd 339 (367)
++|+
T Consensus 120 ~~tP 123 (607)
T PRK11057 120 YIAP 123 (607)
T ss_pred EECh
Confidence 9886
No 200
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.70 E-value=0.01 Score=61.10 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=62.5
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCCHH---------------------HHHHHHHHHhc-CCCc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKDQE---------------------ERTRSVESFRK-GQKD 333 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~---------------------~R~~~~~~F~~-g~~~ 333 (367)
+++++|||.++..|..++..|... +..+..+++..+.. ....++++|+. +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 478999999999999999988554 35667777764433 22478899987 6889
Q ss_pred EEEecccccccCCcCCCCEEEEcCC
Q psy7790 334 VMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 334 vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
|||.+|.+..|.|.|.++.++..-.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKp 618 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKP 618 (667)
T ss_pred EEEEEcccccccCCCccceEEEecc
Confidence 9999999999999999999887544
No 201
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.53 E-value=0.031 Score=59.64 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=87.6
Q ss_pred HHHHHHHHH-cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCC
Q psy7790 175 ESLVRALEA-KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMP 253 (367)
Q Consensus 175 ~~ll~~l~~-~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~ 253 (367)
..+...++. .|+..++|+|.++|+.++. ++.+++...|-..+...+.-..+
T Consensus 446 ~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~------------GrDVLVimPTGSGKSLcYQLPAL---------------- 497 (1195)
T PLN03137 446 KKLEVNNKKVFGNHSFRPNQREIINATMS------------GYDVFVLMPTGGGKSLTYQLPAL---------------- 497 (1195)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHc------------CCCEEEEcCCCccHHHHHHHHHH----------------
Confidence 344444443 4899999999999998876 67788888887766544332221
Q ss_pred CCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc--CC
Q psy7790 254 SMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK--GQ 331 (367)
Q Consensus 254 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~ 331 (367)
. .++.+||.+++++.+..-...|...|+.+..++|+++..++..++..+.. |+
T Consensus 498 ------------------------~-~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~ 552 (1195)
T PLN03137 498 ------------------------I-CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSK 552 (1195)
T ss_pred ------------------------H-cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCC
Confidence 0 13458999999999887677777889999999999999999999999887 89
Q ss_pred CcEEEecc
Q psy7790 332 KDVMVATD 339 (367)
Q Consensus 332 ~~vLVaTd 339 (367)
.+||++|+
T Consensus 553 ~~ILyvTP 560 (1195)
T PLN03137 553 YKLLYVTP 560 (1195)
T ss_pred CCEEEECh
Confidence 99999998
No 202
>PRK13767 ATP-dependent helicase; Provisional
Probab=96.50 E-value=0.015 Score=61.89 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccC
Q psy7790 173 LPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIM 252 (367)
Q Consensus 173 ~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~ 252 (367)
+++.+.+.+++ +|..|||+|.++||.++. +.-+++.+-|-+.+.....-..+..-.. ....+.
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~------------g~nvli~APTGSGKTlaa~Lpil~~l~~--~~~~~~-- 80 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHE------------GKNVLISSPTGSGKTLAAFLAIIDELFR--LGREGE-- 80 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHc------------CCCEEEECCCCCcHHHHHHHHHHHHHHh--hccccC--
Confidence 56777777665 799999999999988765 4557777888777755433222110000 000000
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHH---------------hC-CCeEEEEecCCC
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLL---------------LK-GVEAVAIHGGKD 316 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~---------------~~-~~~~~~lhg~~~ 316 (367)
...+.++|+.++++.-+.+++..|. .. ++.+...||+.+
T Consensus 81 -------------------------~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~ 135 (876)
T PRK13767 81 -------------------------LEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTS 135 (876)
T ss_pred -------------------------CCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCC
Confidence 0112358888999988887765442 11 678899999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccc-----cc-ccC--CcCCCCEEEEcCC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATDV-----AS-KGL--DFEEIKHVINTEA 358 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd~-----~~-rGl--Di~~v~~VI~yd~ 358 (367)
+.+|.+.+ ....+|||||+- +. ... .+.++++||..++
T Consensus 136 ~~~r~~~l----~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~ 181 (876)
T PRK13767 136 SYEKQKML----KKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEI 181 (876)
T ss_pred HHHHHHHH----hCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEech
Confidence 99887655 345789999982 11 111 4678898887553
No 203
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.42 E-value=0.013 Score=47.73 Aligned_cols=67 Identities=21% Similarity=0.394 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCC------eEEEEecCCCHHHHHHHHHHHhcCCC-cEEEecccccccCCcCC--CCEEEEcCCCCC
Q psy7790 295 DAIHEYLLLKGV------EAVAIHGGKDQEERTRSVESFRKGQK-DVMVATDVASKGLDFEE--IKHVINTEAKIK 361 (367)
Q Consensus 295 ~~l~~~L~~~~~------~~~~lhg~~~~~~R~~~~~~F~~g~~-~vLVaTd~~~rGlDi~~--v~~VI~yd~P~~ 361 (367)
+.++..+...+. ....+..+.+..+...+++.|+.... .||++|.-++.|+|+++ ++.||..++|..
T Consensus 5 ~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 5 ESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 344455544433 23455556666678999999998653 79999988999999997 579999999963
No 204
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.41 E-value=0.025 Score=57.85 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHh---hcCCCeEEeeccHHHHHHHHHHHHhC-C-CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc
Q psy7790 267 EAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLK-G-VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 267 ~~k~~~l~~~l~---~~~~~~iVF~~s~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
..|...+++++. ..+.++||.++.+..+..+...|+.. | ..+..+|++++..+|.+++.+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 355555555554 34667999999999999999999754 4 679999999999999999999999999999999754
Q ss_pred cccCCcCCCCEEEEcC
Q psy7790 342 SKGLDFEEIKHVINTE 357 (367)
Q Consensus 342 ~rGlDi~~v~~VI~yd 357 (367)
. -.=+++...||-.+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 3 45566777777654
No 205
>PRK01172 ski2-like helicase; Provisional
Probab=96.30 E-value=0.041 Score=56.99 Aligned_cols=134 Identities=11% Similarity=0.073 Sum_probs=90.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.|+++++|..+++.+...+|. ++++|.++++.++. +.-+++.+.|-+.+..-...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~------------~~nvlv~apTGSGKTl~a~l------------ 56 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRK------------GENVIVSVPTAAGKTLIAYS------------ 56 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhc------------CCcEEEECCCCchHHHHHHH------------
Confidence 467789999999999999987 89999999876543 34456666665554321110
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEecCCCHHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHGGKDQEERTRS 323 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~ 323 (367)
.+++.+. .++++|+.+|++.-|.+.++.+.. .|+.+...+|+.+...+
T Consensus 57 -------------------------ail~~l~-~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--- 107 (674)
T PRK01172 57 -------------------------AIYETFL-AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--- 107 (674)
T ss_pred -------------------------HHHHHHH-hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---
Confidence 1111121 145788899999999988887753 48899999998764322
Q ss_pred HHHHhcCCCcEEEecc-----ccccc-CCcCCCCEEEEcCC
Q psy7790 324 VESFRKGQKDVMVATD-----VASKG-LDFEEIKHVINTEA 358 (367)
Q Consensus 324 ~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~VI~yd~ 358 (367)
+. ...+|+|||. ++.++ ..+.++++||.-++
T Consensus 108 ---~~-~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 108 ---FI-KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred ---hh-ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecc
Confidence 11 3568999998 22233 33678888886554
No 206
>PRK09401 reverse gyrase; Reviewed
Probab=96.29 E-value=0.053 Score=59.11 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=82.4
Q ss_pred CCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEe
Q psy7790 185 GIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264 (367)
Q Consensus 185 g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~ 264 (367)
|+ .|+++|..++|.++. ++-+++.+.|-+.+.. +...
T Consensus 78 G~-~pt~iQ~~~i~~il~------------g~dv~i~ApTGsGKT~-f~l~----------------------------- 114 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLL------------GESFAIIAPTGVGKTT-FGLV----------------------------- 114 (1176)
T ss_pred CC-CCcHHHHHHHHHHHC------------CCcEEEEcCCCCCHHH-HHHH-----------------------------
Confidence 55 799999988888775 4556666777655542 1100
Q ss_pred chhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEE--ecCCCHHHHHHHHHHHhcCCCcEEEec
Q psy7790 265 KQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAI--HGGKDQEERTRSVESFRKGQKDVMVAT 338 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~l--hg~~~~~~R~~~~~~F~~g~~~vLVaT 338 (367)
+...+...+.+++|.+||+.-+.+++..|... ++.+..+ |++++..++....+.+++|..+|+|+|
T Consensus 115 --------~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~T 186 (1176)
T PRK09401 115 --------MSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTT 186 (1176)
T ss_pred --------HHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEEC
Confidence 00111223567999999999999999988755 4454444 556667888888899999999999999
Q ss_pred cc-cc---ccCCcCCCCEEEEcCC
Q psy7790 339 DV-AS---KGLDFEEIKHVINTEA 358 (367)
Q Consensus 339 d~-~~---rGlDi~~v~~VI~yd~ 358 (367)
+- +. ..+....+++||--++
T Consensus 187 p~rL~~~~~~l~~~~~~~lVvDEa 210 (1176)
T PRK09401 187 SQFLSKNFDELPKKKFDFVFVDDV 210 (1176)
T ss_pred HHHHHHHHHhccccccCEEEEECh
Confidence 71 11 1344445777775543
No 207
>KOG0951|consensus
Probab=96.28 E-value=0.019 Score=60.90 Aligned_cols=139 Identities=14% Similarity=0.222 Sum_probs=85.4
Q ss_pred HHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHH----HHhh-
Q psy7790 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE----CLQK- 279 (367)
Q Consensus 205 v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~----~l~~- 279 (367)
++.|...+.+...++.+|..+.. ..++ .++...-+++.....++.+..--.|.+-...-........+ .+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lan-a~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~ 1355 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLAN-ARDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH 1355 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhcc-chhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH
Confidence 77888888888888888877654 3333 23333344455444442222223344433333343333222 2222
Q ss_pred --cCCCeEEeeccHHHHHHHHHHHHhC----------------------CCeEEEEecCCCHHHHHHHHHHHhcCCCcEE
Q psy7790 280 --TEPPVLIFAEKKQDVDAIHEYLLLK----------------------GVEAVAIHGGKDQEERTRSVESFRKGQKDVM 335 (367)
Q Consensus 280 --~~~~~iVF~~s~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 335 (367)
.+.+++||+++++.|..++..|... .++++.=|.+++..+..-+..-|..|.++|+
T Consensus 1356 a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~ 1435 (1674)
T KOG0951|consen 1356 AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVC 1435 (1674)
T ss_pred hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEE
Confidence 3567999999999998887665211 1233333999999999999999999999998
Q ss_pred EecccccccCCc
Q psy7790 336 VATDVASKGLDF 347 (367)
Q Consensus 336 VaTd~~~rGlDi 347 (367)
|..-- ..|+-.
T Consensus 1436 v~s~~-~~~~~~ 1446 (1674)
T KOG0951|consen 1436 VMSRD-CYGTKL 1446 (1674)
T ss_pred EEEcc-cccccc
Confidence 87655 555544
No 208
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.15 E-value=0.036 Score=58.48 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=54.6
Q ss_pred eEEeeccHHHHHHHHHHHHhC------CCeEEEEecCCCHHHHHHHHHHH----------------------hc----CC
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLK------GVEAVAIHGGKDQEERTRSVESF----------------------RK----GQ 331 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~~~~F----------------------~~----g~ 331 (367)
.+|=+++++.+..++..|... .+.+++||+......|..+.++. ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 577778888888888888544 35688999999888887776553 12 35
Q ss_pred CcEEEecccccccCCcCCCCEEEE
Q psy7790 332 KDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 332 ~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
..|+|+|.+.+-|+|+ +.+++|-
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~ 861 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA 861 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee
Confidence 6799999999999998 4666664
No 209
>KOG0327|consensus
Probab=96.11 E-value=0.016 Score=53.80 Aligned_cols=126 Identities=25% Similarity=0.326 Sum_probs=79.3
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 164 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 164 ~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
-+.+|++|+++..|++.+...||..|+.||..+|+.... .+-++.-+-+.+.....+....+..
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~------------G~dv~~qaqsgTgKt~af~i~iLq~---- 87 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIK------------GHDVIAQAQSGTGKTAAFLISILQQ---- 87 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhcccccccc------------CCceeEeeeccccchhhhHHHHHhh----
Confidence 345899999999999999999999999999999988875 2222222222223322222222110
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEE 319 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~ 319 (367)
+ +.+ ....++||+.+|++.+..+....... ++++...-|+.+-..
T Consensus 88 -----------------i---D~~-----------~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~ 136 (397)
T KOG0327|consen 88 -----------------I---DMS-----------VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRR 136 (397)
T ss_pred -----------------c---Ccc-----------hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchh
Confidence 0 000 01235899999999888888776544 567777777766442
Q ss_pred HHHHHHHHhcCCCcEEEecc
Q psy7790 320 RTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd 339 (367)
...++ +.....|+|.|+
T Consensus 137 ~~~~i---~~~~~hivvGTp 153 (397)
T KOG0327|consen 137 EDQAL---LKDKPHIVVGTP 153 (397)
T ss_pred hhhhh---hccCceeecCCc
Confidence 22222 334457888887
No 210
>KOG1015|consensus
Probab=96.02 E-value=0.024 Score=58.45 Aligned_cols=96 Identities=23% Similarity=0.415 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHh----------------------CCCeEEEEecCCCHHHHHH
Q psy7790 268 AKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLL----------------------KGVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 268 ~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~R~~ 322 (367)
.|+..|+++|+. .+.+.|||..|....+-|-.+|.. .|..-.-|.|.....+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 356667777764 467999999999999988888842 1455677889999999999
Q ss_pred HHHHHhcCC----CcEEEecccccccCCcCCCCEEEEcCCCCCcc
Q psy7790 323 SVESFRKGQ----KDVMVATDVASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 323 ~~~~F~~g~----~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
..+.|.+-. .-.||+|-+.+.||++-..+.||.||..+||.
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPS 1250 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPS 1250 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCc
Confidence 999997632 23699999999999999999999999999985
No 211
>KOG1002|consensus
Probab=95.99 E-value=0.025 Score=54.33 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHh---hc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcE-EEecc
Q psy7790 267 EAKIVYLLECLQ---KT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDV-MVATD 339 (367)
Q Consensus 267 ~~k~~~l~~~l~---~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~v-LVaTd 339 (367)
..|+..|.+-|. +. .-+.|||..-....+-+.-.|...|++|+-+-|+|++..|..+++.|++. .+.| ||+--
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 456777766543 22 34799999999999999999999999999999999999999999999987 4554 56667
Q ss_pred cccccCCcCCCCEEEEcCCCCCcc
Q psy7790 340 VASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 340 ~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
+.+-.|++-...+|++.|+=+|+.
T Consensus 699 AGGVALNLteASqVFmmDPWWNpa 722 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPA 722 (791)
T ss_pred cCceEeeechhceeEeecccccHH
Confidence 777889999999999999877653
No 212
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.87 E-value=0.023 Score=46.41 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCC---eEEEEecCCCHHHHHHHHHHHhcCCC---cEEEeccc--ccccCCcCC--CCEEEEcCCCCC
Q psy7790 294 VDAIHEYLLLKGV---EAVAIHGGKDQEERTRSVESFRKGQK---DVMVATDV--ASKGLDFEE--IKHVINTEAKIK 361 (367)
Q Consensus 294 ~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~~~~F~~g~~---~vLVaTd~--~~rGlDi~~--v~~VI~yd~P~~ 361 (367)
.+.+++.+...+. ....+.-+....+...+++.|+.+.. .||+++.- ++-|||+++ ++.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp 81 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFP 81 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCC
Confidence 3455566655443 23344444444556789999998654 69988887 899999997 689999999963
No 213
>KOG0386|consensus
Probab=95.86 E-value=0.022 Score=59.03 Aligned_cols=96 Identities=21% Similarity=0.337 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC---cEEEeccccccc
Q psy7790 268 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK---DVMVATDVASKG 344 (367)
Q Consensus 268 ~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~---~vLVaTd~~~rG 344 (367)
.-+..++-.|+..++++|.||.-....+.+..||...++.-.-+-|.....+|-..++.|..-.. ..|++|-+.+.|
T Consensus 713 ELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragglg 792 (1157)
T KOG0386|consen 713 ELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLG 792 (1157)
T ss_pred HHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccc
Confidence 44555566667789999999999999999999999999999999999999999999999987544 468999999999
Q ss_pred CCcCCCCEEEEcCCCCCcc
Q psy7790 345 LDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 345 lDi~~v~~VI~yd~P~~~~ 363 (367)
++....+.||.||--+++.
T Consensus 793 lNlQtadtviifdsdwnp~ 811 (1157)
T KOG0386|consen 793 LNLQTADTVIIFDSDWNPH 811 (1157)
T ss_pred cchhhcceEEEecCCCCch
Confidence 9999999999999887764
No 214
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.031 Score=58.20 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=56.6
Q ss_pred HHHHHHHH-hhcCCCeEEeeccHHHHHHHHHHHHhCC-----CeEEE-EecCCCHHHHHHHHHHHhcCCCcEEEecccc
Q psy7790 270 IVYLLECL-QKTEPPVLIFAEKKQDVDAIHEYLLLKG-----VEAVA-IHGGKDQEERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 270 ~~~l~~~l-~~~~~~~iVF~~s~~~~~~l~~~L~~~~-----~~~~~-lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
+..++.+. ...+.++++-++|..-+.++++.|.... +.+.. |||.|+.+++..++++|.+|..+|||+|..+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 33344433 3345679999999999999999886542 44333 9999999999999999999999999999854
No 215
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.027 Score=57.77 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=72.5
Q ss_pred echhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 264 VKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+....|.+.+++++.. .+.++||.++.+.....+...|+.. |.++..+|+++++.+|...+.+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 3445666666666654 4567999999999888888888654 89999999999999999999999999999999997
Q ss_pred cccccCCcCCCCEEEEc
Q psy7790 340 VASKGLDFEEIKHVINT 356 (367)
Q Consensus 340 ~~~rGlDi~~v~~VI~y 356 (367)
-+ --.=|++...||-.
T Consensus 305 SA-lF~Pf~~LGLIIvD 320 (730)
T COG1198 305 SA-LFLPFKNLGLIIVD 320 (730)
T ss_pred hh-hcCchhhccEEEEe
Confidence 43 24456666666654
No 216
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=95.41 E-value=0.088 Score=54.91 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=60.7
Q ss_pred cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEE
Q psy7790 184 KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263 (367)
Q Consensus 184 ~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~ 263 (367)
.||. |||+|.+++|.++. +....++-+-|=+.+...++-..+ +. . ..
T Consensus 12 ~G~~-PtpiQ~~~i~~il~-----------G~~~v~~~apTGSGKTaa~aafll--~~----~------~~--------- 58 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVA-----------GQPPESCSTPTGLGKTSIIAAWLL--AV----E------IG--------- 58 (844)
T ss_pred hCCC-CCHHHHHHHHHHHc-----------CCCcceEecCCCCcccHHHHHhhc--cc----c------cc---------
Confidence 4788 99999999998765 112344446666665543321111 10 0 00
Q ss_pred echhhHHHHHHHHHhhcCCCeEEee-ccHHHHHHHHHHHHhC---------------------------CCeEEEEecCC
Q psy7790 264 VKQEAKIVYLLECLQKTEPPVLIFA-EKKQDVDAIHEYLLLK---------------------------GVEAVAIHGGK 315 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~~~~~~iVF~-~s~~~~~~l~~~L~~~---------------------------~~~~~~lhg~~ 315 (367)
...++.|||| ++++-+..+++.+... ++++..++||.
T Consensus 59 ---------------~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~ 123 (844)
T TIGR02621 59 ---------------AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQF 123 (844)
T ss_pred ---------------ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCC
Confidence 0123456655 7776666665555321 47899999998
Q ss_pred CHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 316 DQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 316 ~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+.......+ . ....|||+|-
T Consensus 124 ~~~~q~~~l---~-~~p~IIVgT~ 143 (844)
T TIGR02621 124 ADNDEWMLD---P-HRPAVIVGTV 143 (844)
T ss_pred ChHHHHHhc---C-CCCcEEEECH
Confidence 865443333 3 3568999994
No 217
>KOG0949|consensus
Probab=95.40 E-value=0.017 Score=59.64 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=42.4
Q ss_pred EEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 308 AVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 308 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
++.+|+||+...|..+.=-||+|...||+||..++.||+.| ++.|+.
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF 1011 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVF 1011 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEE
Confidence 67799999999999999999999999999999999999999 444444
No 218
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=95.10 E-value=0.15 Score=53.50 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=80.8
Q ss_pred cCCCCHHHHHHHH-----HcCCCCC---ChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 170 LMKLPESLVRALE-----AKGIKKP---TPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 170 ~l~~p~~ll~~l~-----~~g~~~p---t~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
.+++...+.+.+. ..||..| +|+|.+++|.++. .+-+++-+.|=+.+...++-..+
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l------------~~gvIAeaqTGeGKTLAf~LP~l---- 129 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAM------------HKGFITEMQTGEGKTLTAVMPLY---- 129 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhc------------CCCeEEEeCCCCChHHHHHHHHH----
Confidence 4667777776665 5789999 9999999998875 34466666666655444432221
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCH
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQ 317 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~ 317 (367)
..++. +.+++|.++|+..|.+.++.+.. .|+++.++.||++.
T Consensus 130 --------------------------------~~aL~--g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~ 175 (970)
T PRK12899 130 --------------------------------LNALT--GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPL 175 (970)
T ss_pred --------------------------------HHHhh--cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCH
Confidence 11111 22477889999998888888753 48999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEecc
Q psy7790 318 EERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 318 ~~R~~~~~~F~~g~~~vLVaTd 339 (367)
.++.... .++|+|+|+
T Consensus 176 ~eq~~~y------~~DIVygTP 191 (970)
T PRK12899 176 EKRKEIY------QCDVVYGTA 191 (970)
T ss_pred HHHHHHc------CCCEEEECC
Confidence 8886553 389999998
No 219
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=94.90 E-value=0.081 Score=54.89 Aligned_cols=139 Identities=22% Similarity=0.238 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHH----hcCCCEEEEeCC
Q psy7790 172 KLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARS----ALVKPITINVGR 247 (367)
Q Consensus 172 ~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~----~l~~~~~i~~~~ 247 (367)
.+++.+.+.++.. |..||+.|.++||.+.+ +.-+++.+.|-+.+...-.-. .+...
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~------------G~nvLiiAPTGsGKTeAAfLpil~~l~~~~------- 66 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHS------------GENVLIIAPTGSGKTEAAFLPVINELLSLG------- 66 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhC------------CCceEEEcCCCCChHHHHHHHHHHHHHhcc-------
Confidence 3789999999988 99999999999999986 677888888887665443222 22221
Q ss_pred CCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHH
Q psy7790 248 AGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESF 327 (367)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 327 (367)
.+. ....+ ++.|+.+- +.| .++.-.+|...+...|+++..-||++++.+|.+..
T Consensus 67 ~~~--~~~~i--~~lYIsPL-------kAL------------n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~--- 120 (814)
T COG1201 67 KGK--LEDGI--YALYISPL-------KAL------------NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML--- 120 (814)
T ss_pred CCC--CCCce--EEEEeCcH-------HHH------------HHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc---
Confidence 111 11122 22333321 111 12333445566677899999999999999997655
Q ss_pred hcCCCcEEEecc------cccc--cCCcCCCCEEEEcC
Q psy7790 328 RKGQKDVMVATD------VASK--GLDFEEIKHVINTE 357 (367)
Q Consensus 328 ~~g~~~vLVaTd------~~~r--GlDi~~v~~VI~yd 357 (367)
...-+|||+|+ +.+. .=-+.+|++||--.
T Consensus 121 -~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE 157 (814)
T COG1201 121 -KNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDE 157 (814)
T ss_pred -CCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeeh
Confidence 56788999999 1221 12356888888643
No 220
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.70 E-value=0.12 Score=53.39 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=64.3
Q ss_pred EEechhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC-cEEEe
Q psy7790 262 EYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK-DVMVA 337 (367)
Q Consensus 262 ~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~-~vLVa 337 (367)
++.....|+..+++.+.. .+.|+||-+.+.+..+.++..|...|++...+...-. .|+.-+-.+ .|+. .|-||
T Consensus 407 vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~gaVTiA 483 (822)
T COG0653 407 VYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPGAVTIA 483 (822)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCCccccc
Confidence 344566788877776654 4678999999999999999999999999988888755 333333233 3443 58899
Q ss_pred cccccccCCcC
Q psy7790 338 TDVASKGLDFE 348 (367)
Q Consensus 338 Td~~~rGlDi~ 348 (367)
|+.|+||-||.
T Consensus 484 TNMAGRGTDIk 494 (822)
T COG0653 484 TNMAGRGTDIK 494 (822)
T ss_pred cccccCCcccc
Confidence 99999999985
No 221
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.15 E-value=0.073 Score=55.63 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHhh------------cCCCeEEeeccHHHHHHHHHHHHh
Q psy7790 266 QEAKIVYLLECLQK------------TEPPVLIFAEKKQDVDAIHEYLLL 303 (367)
Q Consensus 266 ~~~k~~~l~~~l~~------------~~~~~iVF~~s~~~~~~l~~~L~~ 303 (367)
+.-|...|.++|.. .++++||||+....|..|.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 44566666665532 135699999999999999999965
No 222
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.12 E-value=0.21 Score=53.27 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-cccccCCcCCCCEEEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-VASKGLDFEEIKHVIN 355 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-~~~rGlDi~~v~~VI~ 355 (367)
++++.|.++|.--|+.-++.|+.+ .+++..+.--.+.++...+++..++|+++|||.|. +++.++-|.|+-++|-
T Consensus 643 GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 643 GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 578999999999988888888654 67889999999999999999999999999999998 6778899999999886
No 223
>KOG0332|consensus
Probab=94.00 E-value=0.11 Score=48.25 Aligned_cols=40 Identities=30% Similarity=0.450 Sum_probs=37.7
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~ 202 (367)
-.+.+|+++++.+.|+..|..++|..|+.||..++|.++.
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~ 126 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLA 126 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhc
Confidence 4677899999999999999999999999999999999987
No 224
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.87 E-value=0.46 Score=47.92 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhh--cCCCeEEeeccHHHHHH----HHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 267 EAKIVYLLECLQK--TEPPVLIFAEKKQDVDA----IHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 267 ~~k~~~l~~~l~~--~~~~~iVF~~s~~~~~~----l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
..-+..++..+.. .+.++...++|---|+. +..+|...|+.+..+.|.+....|.+++++..+|.++++|.|.+
T Consensus 295 GKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA 374 (677)
T COG1200 295 GKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA 374 (677)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch
Confidence 3445556665553 46689999999765554 44555666999999999999999999999999999999999996
Q ss_pred c-cccCCcCCCCEEEEc
Q psy7790 341 A-SKGLDFEEIKHVINT 356 (367)
Q Consensus 341 ~-~rGlDi~~v~~VI~y 356 (367)
+ .-.++|.+.-+||-.
T Consensus 375 LiQd~V~F~~LgLVIiD 391 (677)
T COG1200 375 LIQDKVEFHNLGLVIID 391 (677)
T ss_pred hhhcceeecceeEEEEe
Confidence 5 467889999888853
No 225
>KOG4439|consensus
Probab=93.80 E-value=0.31 Score=49.07 Aligned_cols=98 Identities=19% Similarity=0.309 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHh----hcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc--CCCcE-EEec
Q psy7790 266 QEAKIVYLLECLQ----KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK--GQKDV-MVAT 338 (367)
Q Consensus 266 ~~~k~~~l~~~l~----~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~v-LVaT 338 (367)
...|+..++..+. ....+++|-..-.....-+...|...|+....+||.....+|..+++.|.. |..+| |++=
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 4445554444443 234456666655555667778888899999999999999999999999965 44455 5666
Q ss_pred ccccccCCcCCCCEEEEcCCCCCcc
Q psy7790 339 DVASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 339 d~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
.+.+-||++-+.+|+|..|+=+||.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPa 831 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPA 831 (901)
T ss_pred ccCcceeeecccceEEEEecccCHH
Confidence 6777899999999999999988874
No 226
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.62 E-value=0.062 Score=57.12 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc--CCccccCCCHHHHHH
Q psy7790 79 LKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR--APRCILSLPDQVHDI 147 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~--~~~~i~~~~~~~~~~ 147 (367)
..+.+...+-.+.+.|.+--..+.+.+..|+++++.|+||+||| |..|+..... .+-.|...+.....+
T Consensus 235 ~~~~~~~~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 235 FSKNIDRLGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQ 307 (850)
T ss_pred HHHhhhhcCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHH
Confidence 33444334434455522222234446778999999999999999 8888754322 233455556554444
No 227
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=93.51 E-value=0.29 Score=47.50 Aligned_cols=88 Identities=26% Similarity=0.272 Sum_probs=69.2
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CC---eEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc------ccc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GV---EAVAIHGGKDQEERTRSVESFRKGQKDVMVATD------VAS 342 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd------~~~ 342 (367)
+...|...++++|+.++|+-.+..-+..+... |+ .++++.|..++++|...+. +.+|+|+|+ +.+
T Consensus 50 ~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~ 124 (542)
T COG1111 50 IANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKA 124 (542)
T ss_pred HHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhc
Confidence 44567777778999999999888888777543 44 6789999999999998874 468999998 455
Q ss_pred ccCCcCCCCEEEEcCCCCCcccc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
--||+.+|.++|...+=+.+=+|
T Consensus 125 Grid~~dv~~lifDEAHRAvGny 147 (542)
T COG1111 125 GRIDLDDVSLLIFDEAHRAVGNY 147 (542)
T ss_pred CccChHHceEEEechhhhccCcc
Confidence 56999999999987765554444
No 228
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.46 E-value=0.029 Score=47.25 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHh-------cccccccccccCCccccCc--ccccccCCccccCCCHHHHHHHHhcc
Q psy7790 96 KEEEKILRSVAE-------TKALMGVAELAKGIQYNDP--IKTSWRAPRCILSLPDQVHDIIRRNL 152 (367)
Q Consensus 96 ~~Q~~~i~~i~~-------g~d~~~~a~TgsGKT~~~p--~~~~~~~~~~i~~~~~~~~~~~~~~~ 152 (367)
+.|.+++..+.. .+..+..++||+|||+..- +...+. .-.+.++...+..++...+
T Consensus 6 ~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 6 PYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHHHH
Confidence 458888888774 5889999999999994322 111122 3344556666666665543
No 229
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=93.07 E-value=0.63 Score=38.48 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=57.1
Q ss_pred HHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHH-HHHHHHHHHhcCCCcEEEeccc------
Q psy7790 273 LLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQE-ERTRSVESFRKGQKDVMVATDV------ 340 (367)
Q Consensus 273 l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~-~R~~~~~~F~~g~~~vLVaTd~------ 340 (367)
++..+... ..++||.++++..++.+...+... ++++..+||+.+.. +....+ .++.+|+|+|..
T Consensus 35 ~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~ 110 (169)
T PF00270_consen 35 ALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLI 110 (169)
T ss_dssp HHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHH
T ss_pred HHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccc
Confidence 33444443 247999999999999988888554 46899999998854 222222 678999999982
Q ss_pred ccccCCcCCCCEEEEcC
Q psy7790 341 ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 341 ~~rGlDi~~v~~VI~yd 357 (367)
..+.+++..+++||.-+
T Consensus 111 ~~~~~~~~~~~~iViDE 127 (169)
T PF00270_consen 111 SNGKINISRLSLIVIDE 127 (169)
T ss_dssp HTTSSTGTTESEEEEET
T ss_pred cccccccccceeeccCc
Confidence 22345788888888654
No 230
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=92.95 E-value=0.045 Score=50.39 Aligned_cols=38 Identities=13% Similarity=-0.079 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccc
Q psy7790 91 KEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIK 128 (367)
Q Consensus 91 ~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~ 128 (367)
.+.|.+.-..++..+.+|++++..||||+||| |..|++
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 44433334457777888999999999999999 555554
No 231
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=92.95 E-value=0.045 Score=50.39 Aligned_cols=38 Identities=13% Similarity=-0.079 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccc
Q psy7790 91 KEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIK 128 (367)
Q Consensus 91 ~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~ 128 (367)
.+.|.+.-..++..+.+|++++..||||+||| |..|++
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 44433334457777888999999999999999 555554
No 232
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=92.84 E-value=0.076 Score=53.90 Aligned_cols=51 Identities=14% Similarity=-0.062 Sum_probs=34.0
Q ss_pred HHHHHHhHhcccccccccccCCcc--ccCcccccc----cCCccccCCCHHHHHHHH
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW----RAPRCILSLPDQVHDIIR 149 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~----~~~~~i~~~~~~~~~~~~ 149 (367)
+.+...+.+++.+++.|+||+||| |..|.+... ..+-.|...+.++..++.
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~ 63 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLW 63 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHH
Confidence 445556678899999999999999 888876532 223345555655444433
No 233
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.66 E-value=0.079 Score=55.88 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=36.2
Q ss_pred HHHHHhHhcccccccccccCCcc--ccCcccccc-cCCccccCCCHHHHHHH
Q psy7790 100 KILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-RAPRCILSLPDQVHDII 148 (367)
Q Consensus 100 ~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-~~~~~i~~~~~~~~~~~ 148 (367)
.+..++.+++.+++.|+||+||| |..|+.... ..+..|...+.+...++
T Consensus 256 ~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 256 LVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQI 307 (820)
T ss_pred HHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHH
Confidence 45555667899999999999999 888977653 33455667777666666
No 234
>KOG0350|consensus
Probab=92.63 E-value=0.72 Score=44.75 Aligned_cols=141 Identities=16% Similarity=0.257 Sum_probs=88.0
Q ss_pred CHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhcc-C-CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCcc
Q psy7790 174 PESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR-G-QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKI 251 (367)
Q Consensus 174 p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~-~-~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~ 251 (367)
...+...+.++++...-|+|..++|.+|. .+ ++.+ . .+-++.-++|-+.+...
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~-~~----~~p~~~r~rDIcV~ApTGSGKTLa-------------------- 199 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLE-EI----RSPPPSRPRDICVNAPTGSGKTLA-------------------- 199 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHH-hh----cCCCCCCCCceEEecCCCCCceee--------------------
Confidence 34455668899999999999999998874 11 1121 1 23333334443222111
Q ss_pred CCCCcceEEEEEechhhHHHHHHHHHhhcC---CCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHH
Q psy7790 252 MPSMNVVQEVEYVKQEAKIVYLLECLQKTE---PPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSV 324 (367)
Q Consensus 252 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~---~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~ 324 (367)
|+ .-++++|...+ -+++|.++++.-+-.++..|... |+.++.+.|.-+-+.-.+-+
T Consensus 200 -----------Y~------iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL 262 (620)
T KOG0350|consen 200 -----------YV------IPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQL 262 (620)
T ss_pred -----------eh------hHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHH
Confidence 00 11334444432 25899999999999999998654 78888888876644433322
Q ss_pred -HHHhcCCCcEEEeccc-------ccccCCcCCCCEEEEc
Q psy7790 325 -ESFRKGQKDVMVATDV-------ASKGLDFEEIKHVINT 356 (367)
Q Consensus 325 -~~F~~g~~~vLVaTd~-------~~rGlDi~~v~~VI~y 356 (367)
..-...+++|||+|+- .-.|+|+.+.++.|..
T Consensus 263 ~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 263 ASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred hcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 2233346799999992 2468888888877754
No 235
>PRK13766 Hef nuclease; Provisional
Probab=92.47 E-value=0.84 Score=48.14 Aligned_cols=79 Identities=28% Similarity=0.351 Sum_probs=59.5
Q ss_pred HHhhcCCCeEEeeccHHHHHHHHHHHHhC-CC---eEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc------cccccC
Q psy7790 276 CLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GV---EAVAIHGGKDQEERTRSVESFRKGQKDVMVATD------VASKGL 345 (367)
Q Consensus 276 ~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd------~~~rGl 345 (367)
.+...++++||.|+|+..+...+..++.. ++ ++..++|+.+..+|...+. ..+|+|+|+ .+..-+
T Consensus 53 ~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~ 127 (773)
T PRK13766 53 RLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRI 127 (773)
T ss_pred HHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCC
Confidence 34445678999999999998887777653 33 8899999999988876553 357999997 234557
Q ss_pred CcCCCCEEEEcCCC
Q psy7790 346 DFEEIKHVINTEAK 359 (367)
Q Consensus 346 Di~~v~~VI~yd~P 359 (367)
++.++++||..++=
T Consensus 128 ~~~~~~liVvDEaH 141 (773)
T PRK13766 128 SLEDVSLLIFDEAH 141 (773)
T ss_pred ChhhCcEEEEECCc
Confidence 88889998877653
No 236
>KOG0921|consensus
Probab=91.82 E-value=0.61 Score=48.39 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=67.1
Q ss_pred CCeEEeeccHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLK-------GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
+-++||-+--.....|..+|... .+.+...|+.....+..++.+.-..|..++++.|.++.--+-+.++..||
T Consensus 644 gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vi 723 (1282)
T KOG0921|consen 644 GAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVI 723 (1282)
T ss_pred cceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEE
Confidence 45899999988888888888544 46889999999988888999999999999999999999999999988888
Q ss_pred EcCCC
Q psy7790 355 NTEAK 359 (367)
Q Consensus 355 ~yd~P 359 (367)
.-+.-
T Consensus 724 d~cka 728 (1282)
T KOG0921|consen 724 DSCKA 728 (1282)
T ss_pred eeeee
Confidence 76543
No 237
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=91.48 E-value=1.3 Score=45.31 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCCeEEeeccHHHHHHHHHHHH----hCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLL----LKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+.+++|.++|+..|.+.++.+. ..|+++.++.|+++.++|..+. .++|+++|+
T Consensus 144 G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 144 GLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 4569999999998887777764 4599999999999987766544 478999998
No 238
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=90.45 E-value=1.5 Score=48.95 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCeEEeeccHHHHHHHHHHHHh----------------CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLL----------------KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV----- 340 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~----------------~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~----- 340 (367)
.++|+.++++.-+.++.+.|+. .++.+..+||+.++.+|.+.+ ....+|||+|+-
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~L 113 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT----RNPPDILITTPESLYLM 113 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh----cCCCCEEEecHHHHHHH
Confidence 4699999999999988887742 368999999999999987654 456799999992
Q ss_pred c-ccc-CCcCCCCEEEEcCC
Q psy7790 341 A-SKG-LDFEEIKHVINTEA 358 (367)
Q Consensus 341 ~-~rG-lDi~~v~~VI~yd~ 358 (367)
+ .++ ..+.+|++||--++
T Consensus 114 Ltsk~r~~L~~Vr~VIVDE~ 133 (1490)
T PRK09751 114 LTSRARETLRGVETVIIDEV 133 (1490)
T ss_pred HhhhhhhhhccCCEEEEecH
Confidence 2 233 35889999997653
No 239
>COG4889 Predicted helicase [General function prediction only]
Probab=89.74 E-value=0.16 Score=52.41 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=61.2
Q ss_pred CeEEeeccHHHHHHHHHHHH-----------h--CCC--eEEEEecCCCHHHHHHHHH---HHhcCCCcEEEeccccccc
Q psy7790 283 PVLIFAEKKQDVDAIHEYLL-----------L--KGV--EAVAIHGGKDQEERTRSVE---SFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~-----------~--~~~--~~~~lhg~~~~~~R~~~~~---~F~~g~~~vLVaTd~~~rG 344 (367)
++|-||.+.+....++..+. . .++ ++....|.|+..+|...+. .|...+++||----.++.|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 58999999888777776662 1 244 4445568899999965543 3455678888877889999
Q ss_pred CCcCCCCEEEEcCCCCCcc
Q psy7790 345 LDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 345 lDi~~v~~VI~yd~P~~~~ 363 (367)
+|+|.++.||.|+.-.+..
T Consensus 542 VDVPaLDsViFf~pr~smV 560 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMV 560 (1518)
T ss_pred CCccccceEEEecCchhHH
Confidence 9999999999999766543
No 240
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=88.20 E-value=5 Score=42.70 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccC
Q psy7790 173 LPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIM 252 (367)
Q Consensus 173 ~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~ 252 (367)
.++.+...+.+.|+..+-..|.+++-.+. ..+-+|+.|.|-+.+...+.-.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~------------~G~~vvVtTgTgSGKTe~FllP----------------- 105 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIR------------EGRNVVVTTGTGSGKTESFLLP----------------- 105 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHH------------CCCCEEEECCCCCchhHHHHHH-----------------
Confidence 45555667777777777777766643333 3567777777776665544322
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHH----HHHHHHHHHhCC--CeEEEEecCCCHHHHHHHHHH
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQD----VDAIHEYLLLKG--VEAVAIHGGKDQEERTRSVES 326 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~----~~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~~~~ 326 (367)
.|-.+++....++|++.||+.- ++++.+++...+ +.+..|+|+..+.+|. .
T Consensus 106 -------------------Ild~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~ 162 (851)
T COG1205 106 -------------------ILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----A 162 (851)
T ss_pred -------------------HHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----H
Confidence 2223333334468999999754 566777776666 8999999999999987 4
Q ss_pred HhcCCCcEEEecc
Q psy7790 327 FRKGQKDVMVATD 339 (367)
Q Consensus 327 F~~g~~~vLVaTd 339 (367)
+..+..+||++++
T Consensus 163 ~~~~pp~IllTNp 175 (851)
T COG1205 163 IIRNPPDILLTNP 175 (851)
T ss_pred HHhCCCCEEEeCH
Confidence 4478899999987
No 241
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.86 E-value=32 Score=34.84 Aligned_cols=112 Identities=22% Similarity=0.336 Sum_probs=62.9
Q ss_pred cHHHHHHHHHhcCCCEEE-EeCCCCccCCCCcceEEEEEechh---hHHHHHHHHHhhcCC-CeEEeeccHHHHHHHHHH
Q psy7790 226 PKKIQNFARSALVKPITI-NVGRAGKIMPSMNVVQEVEYVKQE---AKIVYLLECLQKTEP-PVLIFAEKKQDVDAIHEY 300 (367)
Q Consensus 226 ~~~v~~l~~~~l~~~~~i-~~~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~~l~~~~~-~~iVF~~s~~~~~~l~~~ 300 (367)
|.++-.+++.++.+...+ .+... ..-.+.+..+..+ ++.......+.+.+. ...|-|.|..+|..+...
T Consensus 601 t~eI~efan~~l~d~~~~~p~~rs------ge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~ 674 (747)
T COG3973 601 TAEIDEFANSLLPDRFRIHPLTRS------GEKPAVIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTDHDCKAVMDS 674 (747)
T ss_pred hHHHHHHHHHhccCCCccchhhcC------CCCceeeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcHHHHHHHHHH
Confidence 456777787777641111 11111 1122333333333 455555666666554 477899999999999999
Q ss_pred HHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCC
Q psy7790 301 LLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 301 L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P 359 (367)
|+... ++.--...=+.|..|.+-+.|. .+.||.| +|||-||+.
T Consensus 675 lre~~----------~~r~I~k~nq~f~~~~~vipvy---~aKGlEF---D~viv~d~s 717 (747)
T COG3973 675 LREKD----------SQRTIAKENQRFHHGSDVIPVY---DAKGLEF---DHVIVVDPS 717 (747)
T ss_pred Hhhcc----------hhhHHHhhcccccCCceEEEee---eccccee---eeEEEecch
Confidence 97543 1111122223455554434443 4789876 578888874
No 242
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=86.26 E-value=3.9 Score=42.38 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=53.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHH----hCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc------ccc-------
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLL----LKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV------ASK------- 343 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~------~~r------- 343 (367)
+.++.|.|+|...|.+.++.+. ..|+++.++.|+++..+|..+. ..+|+++|+. +-.
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y------~~dIvyGT~~rlgfDyLrd~~~~~~~ 170 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY------ACDITYGTNNELGFDYLRDNMAHSKE 170 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc------CCCEEEECCCchhhHHHhcccccchh
Confidence 4569999999988888877764 4589999999999988877666 3799999996 111
Q ss_pred cCCcCCCCEEEEc
Q psy7790 344 GLDFEEIKHVINT 356 (367)
Q Consensus 344 GlDi~~v~~VI~y 356 (367)
.+.+.++.++|--
T Consensus 171 ~~~~r~l~~aIID 183 (745)
T TIGR00963 171 EKVQRPFHFAIID 183 (745)
T ss_pred hhhccccceeEee
Confidence 3456677776654
No 243
>KOG1133|consensus
Probab=86.17 E-value=20 Score=36.63 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=59.4
Q ss_pred hHHHHHHHHHh----hcCCCeEEeeccHHHHHHHHHHHHhCCC-------eEEEEecCCCHHHHHHHHHHHhc----CCC
Q psy7790 268 AKIVYLLECLQ----KTEPPVLIFAEKKQDVDAIHEYLLLKGV-------EAVAIHGGKDQEERTRSVESFRK----GQK 332 (367)
Q Consensus 268 ~k~~~l~~~l~----~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~R~~~~~~F~~----g~~ 332 (367)
.-+..|-..+. .-++.+++|++|.+--..+.......|+ +.+.+-..-+ -..+++.|.. |.-
T Consensus 612 ~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~G 688 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRG 688 (821)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCC
Confidence 33444444443 3467899999999999999998887654 2233332222 2445555543 555
Q ss_pred cEEEec--ccccccCCcCC--CCEEEEcCCCCC
Q psy7790 333 DVMVAT--DVASKGLDFEE--IKHVINTEAKIK 361 (367)
Q Consensus 333 ~vLVaT--d~~~rGlDi~~--v~~VI~yd~P~~ 361 (367)
.+|+|- --++-||+|.| .+.||..++|..
T Consensus 689 aiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 689 AILLAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred eEEEEEeccccccccccccccccEEEEeecCCC
Confidence 566543 35678999975 789999999974
No 244
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=85.60 E-value=0.55 Score=40.73 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHhcccccccccccCCccc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQY 123 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~ 123 (367)
++|+.++.+++...=+++.++.|+||||
T Consensus 7 ~~Q~~~~~al~~~~~v~~~G~AGTGKT~ 34 (205)
T PF02562_consen 7 EEQKFALDALLNNDLVIVNGPAGTGKTF 34 (205)
T ss_dssp HHHHHHHHHHHH-SEEEEE--TTSSTTH
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCcHHH
Confidence 3499999999988888999999999996
No 245
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=85.16 E-value=0.45 Score=41.59 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhHhccc-ccccccccCCcc
Q psy7790 95 LKEEEKILRSVAETKA-LMGVAELAKGIQ 122 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g~d-~~~~a~TgsGKT 122 (367)
.+.|.+++..++.... .++.+|-|+|||
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT 31 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKT 31 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHH
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChH
Confidence 3559999999999999 899999999999
No 246
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=84.09 E-value=1.6 Score=32.07 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..++++||++-..+...+..|+..|+++..+.||+.
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 457999999877888899999999999999999975
No 247
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=84.09 E-value=3.6 Score=40.98 Aligned_cols=50 Identities=32% Similarity=0.466 Sum_probs=41.7
Q ss_pred cccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHH
Q psy7790 168 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKK 228 (367)
Q Consensus 168 f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~ 228 (367)
..++.+|..+.+.|+..|+....|+|..++...|- ...-.+.+|||.+.+
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLL-----------eG~nllVVSaTasGK 245 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLL-----------EGENLLVVSATASGK 245 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccc-----------cCCceEEEeccCCCc
Confidence 45688999999999999999999999999887764 345567789998765
No 248
>KOG0389|consensus
Probab=84.06 E-value=5.8 Score=40.94 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEeccccc
Q psy7790 272 YLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVATDVAS 342 (367)
Q Consensus 272 ~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVaTd~~~ 342 (367)
.++.+|.. .++|-||-|++.-.=.++.+ |... .+.+..|||. |.+|.++...+..+ .++|||+|=-++
T Consensus 437 aFlayLkq~g~~gpHLVVvPsSTleNWlrE-f~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la 510 (941)
T KOG0389|consen 437 AFLAYLKQIGNPGPHLVVVPSSTLENWLRE-FAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLA 510 (941)
T ss_pred HHHHHHHHcCCCCCcEEEecchhHHHHHHH-HHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecc
Confidence 34444443 35788999987654333333 2222 5789999998 79999999999988 788999997554
No 249
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=83.37 E-value=1.1 Score=42.34 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=22.9
Q ss_pred HHHHHHHhHhcccc--cccccccCCccccC
Q psy7790 98 EEKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
-+.++..+++|.+. ++.++|||||||+.
T Consensus 76 ~~plv~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 76 TKPLVDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHHHHHCCCCceEEeeCCCCCCCeEEE
Confidence 45678888999875 68899999999864
No 250
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=83.18 E-value=0.69 Score=39.50 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHhHhcccc--cccccccCCccccC
Q psy7790 100 KILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
.++..+++|.|. ++-++||+||||+.
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~Tm 41 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEec
Confidence 678888999875 67899999999864
No 251
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=82.89 E-value=0.92 Score=48.78 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHHHhHhcccccccccccCCcc--ccCcccc
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQ--YNDPIKT 129 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~ 129 (367)
..+...+.+++.+++.|+||+||| |..|...
T Consensus 267 ~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~ 299 (928)
T PRK08074 267 KEVYTALRDSEHALIEAGTGTGKSLAYLLPAAY 299 (928)
T ss_pred HHHHHHHhcCCCEEEECCCCCchhHHHHHHHHH
Confidence 344455667899999999999999 8888753
No 252
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=82.82 E-value=3.7 Score=41.36 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=53.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
.+-|||-.+=..--..=...|+..|+.+..+|+.++.++|..++..+..|++++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 56789999988888888888999999999999999999999999999999999886655
No 253
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=82.73 E-value=0.61 Score=40.23 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHhccc--ccccccccCCccccCcc-cccccC---CccccCCCHHHHHHHHhccC
Q psy7790 95 LKEEEKILRSVAETKA--LMGVAELAKGIQYNDPI-KTSWRA---PRCILSLPDQVHDIIRRNLR 153 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g~d--~~~~a~TgsGKT~~~p~-~~~~~~---~~~i~~~~~~~~~~~~~~~~ 153 (367)
.++|++++..++...+ .+.+++.|+||||.+-. ...|.. .-.+.+++...+..+++..+
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~ 67 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG 67 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC
Confidence 3459999999976553 56779999999964332 222221 22456888888888887643
No 254
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=82.30 E-value=0.76 Score=43.44 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=21.8
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
..+++.+++|.+. ++-++|||||||++
T Consensus 78 ~p~v~~~l~G~n~ti~aYGqtGSGKTyTm 106 (345)
T cd01368 78 LPLVQDLLKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCCeEEe
Confidence 4577888899874 67799999999864
No 255
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=82.23 E-value=1.3 Score=41.44 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHHHhHhccc--ccccccccCCccccC
Q psy7790 98 EEKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
-+.+++.+++|.+ +++.++|||||||+.
T Consensus 73 ~~plv~~~~~G~n~~i~ayGqtGSGKTyTm 102 (322)
T cd01367 73 VKPLIPHVFEGGVATCFAYGQTGSGKTYTM 102 (322)
T ss_pred HHHHHHHHhCCCceEEEeccCCCCCCceEe
Confidence 3567888899977 467899999999864
No 256
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.73 E-value=12 Score=28.83 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCC---CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-ccccCCc-----CCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKG---VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-ASKGLDF-----EEIK 351 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-~~rGlDi-----~~v~ 351 (367)
..++||+|++...+.+....+.... ..+..++++....... ........++++|.- +.+.+.. ...+
T Consensus 30 ~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~ 105 (144)
T cd00046 30 GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPGRLLDELERLKLSLKKLD 105 (144)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcHHHHHHHHcCCcchhcCC
Confidence 4679999999999988888775543 7888899987655554 233467889999986 4443332 2455
Q ss_pred EEEEc
Q psy7790 352 HVINT 356 (367)
Q Consensus 352 ~VI~y 356 (367)
.||.-
T Consensus 106 ~iiiD 110 (144)
T cd00046 106 LLILD 110 (144)
T ss_pred EEEEe
Confidence 55543
No 257
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=81.49 E-value=1.4 Score=41.51 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=22.0
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+.+++.+++|.+. ++-++|||||||+.
T Consensus 64 ~p~v~~~~~G~n~ti~aYGqTGSGKTyTm 92 (337)
T cd01373 64 KPLVEDCLSGYNGSIFAYGQTGSGKTYTM 92 (337)
T ss_pred HHHHHHHhCCCceeEEEeCCCCCCceEEe
Confidence 4577888999884 68899999999864
No 258
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.47 E-value=1.1 Score=46.85 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=25.6
Q ss_pred HHhHHHHHHHHHHhHhcccccccccccCCcc
Q psy7790 92 EKQLKEEEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 92 ~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
+.|.+.-+.++.++..|+.++..||||+|||
T Consensus 13 ~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKT 43 (705)
T TIGR00604 13 PEQRSYMRDLKRSLDRGDEAILEMPSGTGKT 43 (705)
T ss_pred HHHHHHHHHHHHHhccCCceEEeCCCCCCcc
Confidence 4455556677778889999999999999999
No 259
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=81.06 E-value=5.7 Score=29.41 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
+.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 457999999877778888899999999888899874
No 260
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=80.45 E-value=0.97 Score=42.93 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
..+++.++.|.+ +++.++|||||||++
T Consensus 78 ~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm 106 (356)
T cd01365 78 RELLDHAFEGYNVCLFAYGQTGSGKSYTM 106 (356)
T ss_pred HHHHHHHhCCCceEEEEecCCCCCCeEEe
Confidence 456778889987 478899999999864
No 261
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=79.66 E-value=1.1 Score=42.08 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=21.8
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.+++.+++|.+ +++-++|||||||++
T Consensus 70 ~p~v~~~~~G~n~~i~ayG~tgSGKTyTm 98 (334)
T cd01375 70 KPVVDSALDGYNGTIFAYGQTGAGKTFTM 98 (334)
T ss_pred HHHHHHHhCCCccceeeecCCCCCCeEEc
Confidence 456788889987 467899999999865
No 262
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=79.60 E-value=1.7 Score=40.55 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=22.6
Q ss_pred HHHHHHHhHhcccc--cccccccCCccccC
Q psy7790 98 EEKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
-..+++.+++|.+. ++.++|||||||+.
T Consensus 69 ~~plv~~~~~G~n~~i~ayG~tgSGKTyTm 98 (319)
T cd01376 69 VKPIVPHLLSGQNATVFAYGSTGAGKTHTM 98 (319)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCcEEE
Confidence 45678889999875 67789999999864
No 263
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=79.27 E-value=6.9 Score=41.41 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+..++|.++|..-|.+.++.+.. .|+.|.+++|+++..+|.... ..+|+++|+
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~ 179 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTN 179 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECC
Confidence 44699999999988888887753 489999999999999886665 479999998
No 264
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=78.63 E-value=22 Score=29.82 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=58.7
Q ss_pred EechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEE-EecCCCHHHHHHHHHHHhcCCCcEEEe
Q psy7790 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVA-IHGGKDQEERTRSVESFRKGQKDVMVA 337 (367)
Q Consensus 263 ~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~-lhg~~~~~~R~~~~~~F~~g~~~vLVa 337 (367)
.+...+-+..|++.....+.++.++-.+...++.+...|+.. |+.++. +||.+...+...+++.......++|+.
T Consensus 28 r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 28 RVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred ccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 344556677788887777777888888888899999888766 788777 788888888888888888888886653
No 265
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=78.46 E-value=2.6 Score=31.62 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++|+|.+-..+...+..|...|+.+..+.||+.
T Consensus 61 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 61 DQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 457999999988889999999999999888999975
No 266
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=78.05 E-value=1 Score=41.45 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHhcccccccccccCCccccCc-----ccccc-cCCcccc--CCCHHHHHHHHhc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQYNDP-----IKTSW-RAPRCIL--SLPDQVHDIIRRN 151 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-----~~~~~-~~~~~i~--~~~~~~~~~~~~~ 151 (367)
++|.++|.. ....+++.|..|||||.++- ++... .+|..|. ..++.-+..++..
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~r 64 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRER 64 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHH
Confidence 459999988 78899999999999994221 11222 3444444 3455555555544
No 267
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=77.98 E-value=13 Score=38.45 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=62.0
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCe-EEEE-------------------------ec
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVE-AVAI-------------------------HG 313 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~-~~~l-------------------------hg 313 (367)
+.-+....|...+..++...+.++||.+++...|..++..|+.. +-+ |..| .+
T Consensus 34 l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~ 113 (655)
T TIGR00631 34 LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASIN 113 (655)
T ss_pred EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCC
Confidence 34445567777778888887889999999999999999999765 333 4444 11
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecccccccCC
Q psy7790 314 GKDQEERTRSVESFRKGQKDVMVATDVASKGLD 346 (367)
Q Consensus 314 ~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD 346 (367)
.--...|..++.++.+++-.|+|||-.+-+|+=
T Consensus 114 ~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~ 146 (655)
T TIGR00631 114 DEIERLRHSATRSLLERRDVIVVASVSCIYGLG 146 (655)
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCC
Confidence 122456889999999887778888865555543
No 268
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=77.61 E-value=2.2 Score=39.97 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=22.8
Q ss_pred HHHHHHHhHhcccc--cccccccCCccccC
Q psy7790 98 EEKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
-+.+++.++.|.+. ++.++|||||||++
T Consensus 65 ~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm 94 (325)
T cd01369 65 AKPIVDDVLNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HHHHHHHHHcCccceEEEeCCCCCCceEEe
Confidence 35678888999885 78899999999763
No 269
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=77.49 E-value=4.4 Score=30.06 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=30.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||++-..+...+..|+..|+ ++..+.|||.
T Consensus 56 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 56 ATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 45799999998888888999999998 6888999874
No 270
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=77.22 E-value=24 Score=29.52 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=58.4
Q ss_pred EechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEE-EecCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVA-IHGGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 263 ~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~-lhg~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
.+...+-+..|+......+.++-++-.+-+.++.+...|+.. ++.+.. +||.++..+...+++.......++|+
T Consensus 30 rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 30 RVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred ccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 345566677788877777777888888888899999999777 777775 56668888899999999988888665
No 271
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=77.12 E-value=1.9 Score=42.38 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHhHhc-ccccccccccCCccccCc-ccccccCCccccCCCH----HHHHHHHh
Q psy7790 100 KILRSVAET-KALMGVAELAKGIQYNDP-IKTSWRAPRCILSLPD----QVHDIIRR 150 (367)
Q Consensus 100 ~~i~~i~~g-~d~~~~a~TgsGKT~~~p-~~~~~~~~~~i~~~~~----~~~~~~~~ 150 (367)
++...+..| +...-.+-|||||||+.. +......|.++.+... |++..++.
T Consensus 23 ~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~ 79 (663)
T COG0556 23 ELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKE 79 (663)
T ss_pred HHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHH
Confidence 344444444 456778899999998654 3334555666665554 55555554
No 272
>PRK10536 hypothetical protein; Provisional
Probab=76.96 E-value=1.5 Score=39.43 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHhHhcccccccccccCCcccc
Q psy7790 97 EEEKILRSVAETKALMGVAELAKGIQYN 124 (367)
Q Consensus 97 ~Q~~~i~~i~~g~d~~~~a~TgsGKT~~ 124 (367)
.|...+..+.++.-+++.+++|+||||.
T Consensus 63 ~Q~~~l~al~~~~lV~i~G~aGTGKT~L 90 (262)
T PRK10536 63 AQAHYLKAIESKQLIFATGEAGCGKTWI 90 (262)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3888888888888888999999999963
No 273
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=76.50 E-value=31 Score=29.17 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=53.6
Q ss_pred chhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 265 KQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
...+-+..|++.....+-++.++-.+...++.+++.|+.. |+.+...||..+..+...+++.......++|+
T Consensus 32 ~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 32 AGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred ChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 3445556666666555556666667777888899999765 78877789999988888888888887777654
No 274
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=75.83 E-value=1.6 Score=41.36 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
..+++.++.|.+ +++-++|||||||++
T Consensus 71 ~plv~~~~~G~n~~i~ayG~tgSGKTyTl 99 (352)
T cd01364 71 SPILDEVLMGYNCTIFAYGQTGTGKTYTM 99 (352)
T ss_pred HHHHHHHhCCCeEEEEECCCCCCCCcEEe
Confidence 456778889987 577899999999764
No 275
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=75.57 E-value=14 Score=28.09 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe--EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE--AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~lhg~~~ 316 (367)
..+++|||.+-......+..|...|+. +..+.||+.
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 457999999887777788999999984 888999974
No 276
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=75.51 E-value=1.7 Score=40.87 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHHHhHhccc--ccccccccCCccccC
Q psy7790 98 EEKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
-..+++.+++|.+ +++.++|||||||+.
T Consensus 70 ~~plv~~~~~G~n~~i~ayG~tgSGKTyTm 99 (333)
T cd01371 70 ARPLVDSVLEGYNGTIFAYGQTGTGKTFTM 99 (333)
T ss_pred HHHHHHHHhCCCceeEEecCCCCCCCcEee
Confidence 3557788899987 578899999999864
No 277
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=75.47 E-value=1.4 Score=45.82 Aligned_cols=21 Identities=19% Similarity=-0.028 Sum_probs=17.9
Q ss_pred cccccccccccCCcc--ccCccc
Q psy7790 108 TKALMGVAELAKGIQ--YNDPIK 128 (367)
Q Consensus 108 g~d~~~~a~TgsGKT--~~~p~~ 128 (367)
++.+++-|+||+||| |..|..
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai 71 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGI 71 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHH
Confidence 367889999999999 888865
No 278
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=75.00 E-value=4.7 Score=29.48 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..++||||.+...+..++..|...|+. +..+.||+.
T Consensus 56 ~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 56 DKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 456999999989999999999999987 888999964
No 279
>COG1204 Superfamily II helicase [General function prediction only]
Probab=74.95 E-value=14 Score=38.86 Aligned_cols=78 Identities=23% Similarity=0.216 Sum_probs=56.8
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHH---hCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc----c-cccc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLL---LKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD----V-ASKG 344 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~---~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd----~-~~rG 344 (367)
++..+.+.+++++--||++.-|.+.+..+. ..|+++..++|+++.... +-++.+|+|+|. . ....
T Consensus 68 i~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l~~~~ViVtT~EK~Dsl~R~~ 140 (766)
T COG1204 68 ILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RLARYDVIVTTPEKLDSLTRKR 140 (766)
T ss_pred HHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hhccCCEEEEchHHhhHhhhcC
Confidence 444455556789999999999999999988 779999999999874431 125689999998 1 2222
Q ss_pred C-CcCCCCEEEEcC
Q psy7790 345 L-DFEEIKHVINTE 357 (367)
Q Consensus 345 l-Di~~v~~VI~yd 357 (367)
- =+.+|++||.-+
T Consensus 141 ~~~~~~V~lvViDE 154 (766)
T COG1204 141 PSWIEEVDLVVIDE 154 (766)
T ss_pred cchhhcccEEEEee
Confidence 2 245788887654
No 280
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=74.77 E-value=21 Score=29.48 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=47.8
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCC-----CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----ccccc-CCcCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKG-----VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VASKG-LDFEEI 350 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~-----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v 350 (367)
.++||.+++...+..+...+.... .....+++... ...+..+..+...++++|. ....+ ++...+
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~ 130 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNV 130 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHC
Confidence 569999999988888887776544 34455555433 3345556667669999993 33333 466677
Q ss_pred CEEEEcCC
Q psy7790 351 KHVINTEA 358 (367)
Q Consensus 351 ~~VI~yd~ 358 (367)
+++|.-++
T Consensus 131 ~~iIiDE~ 138 (201)
T smart00487 131 DLVILDEA 138 (201)
T ss_pred CEEEEECH
Confidence 77776543
No 281
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=74.66 E-value=7.5 Score=34.24 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=75.7
Q ss_pred hHhcccccccccccCCccccCcccccc-cC--------CccccCCCHHHHHHHHhc-cCeEEecCCCCccccccccCCCC
Q psy7790 105 VAETKALMGVAELAKGIQYNDPIKTSW-RA--------PRCILSLPDQVHDIIRRN-LRILVEGDDVPPACCSFRLMKLP 174 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT~~~p~~~~~-~~--------~~~i~~~~~~~~~~~~~~-~~i~~~g~~~~~~~~~f~~l~~p 174 (367)
+..|.=+..++|+|||||-.+-+...+ .| -..+..+.......+|.. ++.+.-.-+.-+.+...+++.+|
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhH
Confidence 345666788999999999333333222 12 122456677677777754 45544444444454445554443
Q ss_pred HHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEE-eecCCCcH---HHHHHHHHhcCCCEEEEeCCCCc
Q psy7790 175 ESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTL-LFSATMPK---KIQNFARSALVKPITINVGRAGK 250 (367)
Q Consensus 175 ~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~i-l~SAT~~~---~v~~l~~~~l~~~~~i~~~~~~~ 250 (367)
-.+..... . .....+..+++.+.-..... -+-+.++. .--.+++..+.+|..|-.+.+..
T Consensus 108 l~~~~~~~------~----------~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTg 171 (226)
T COG1136 108 LLIAGKSA------G----------RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTG 171 (226)
T ss_pred HHHcCCCh------h----------HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccc
Confidence 22111100 0 00122223333322110000 01111111 12246777888988887766543
Q ss_pred cCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeec
Q psy7790 251 IMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAE 289 (367)
Q Consensus 251 ~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~ 289 (367)
++. .+....+..|+.-+.+..+.++|++.
T Consensus 172 -----nLD-----~~t~~~V~~ll~~~~~~~g~tii~VT 200 (226)
T COG1136 172 -----NLD-----SKTAKEVLELLRELNKERGKTIIMVT 200 (226)
T ss_pred -----cCC-----hHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 111 12234455555556555567777773
No 282
>KOG4280|consensus
Probab=74.64 E-value=1.8 Score=43.32 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHhHhccc--ccccccccCCccccC
Q psy7790 98 EEKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
=..++..+++|.| +++-++||+||||+.
T Consensus 74 ~~~lV~svl~GyNgtvFaYGQTGsGKTyTM 103 (574)
T KOG4280|consen 74 VAPLVESVLEGYNGTVFAYGQTGSGKTYTM 103 (574)
T ss_pred hHHHHHHHhcccCceEEEeccCCCCCceEe
Confidence 4668888999987 688999999999864
No 283
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=74.59 E-value=2.9 Score=39.08 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=22.5
Q ss_pred HHHHHHHhHhcccc--cccccccCCccccC
Q psy7790 98 EEKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
-..+++.++.|.+. ++.++|||||||++
T Consensus 67 ~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl 96 (328)
T cd00106 67 AKPLVESVLEGYNGTIFAYGQTGSGKTYTM 96 (328)
T ss_pred HHHHHHHHhCCCceeEEEecCCCCCCeEEe
Confidence 45678888999875 67899999999753
No 284
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=74.54 E-value=1.4 Score=45.60 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=26.0
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccc
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKT 129 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~ 129 (367)
..+-+.|.+--..+...+..|+.++..||||+||| |..|...
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~ 57 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALA 57 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHH
Confidence 34444422222333344556677999999999999 6666554
No 285
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=74.12 E-value=3.3 Score=38.71 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
..+++.++.|.+ +++.++|||||||+.
T Consensus 63 ~p~v~~~l~G~n~~i~ayG~tgSGKT~T~ 91 (321)
T cd01374 63 KPVVRSALEGYNGTIFAYGQTSSGKTFTM 91 (321)
T ss_pred HHHHHHHHCCCceeEEeecCCCCCCceec
Confidence 457788889987 467799999999864
No 286
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=73.75 E-value=20 Score=31.93 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=47.2
Q ss_pred CeEEeecc-----------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcEEEeccccccc
Q psy7790 283 PVLIFAEK-----------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDVMVATDVASKG 344 (367)
Q Consensus 283 ~~iVF~~s-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vLVaTd~~~rG 344 (367)
-+||+.|. ..+++.|.+.|+..|+.+. ++-+++..+-.+++++|... ..+++|+. .++.|
T Consensus 10 ~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 10 LALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred EEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 37888775 4689999999999999875 57789999999999999773 34555555 66777
No 287
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=73.56 E-value=4.5 Score=30.49 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=42.2
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCH------------HHHHHHHHHHhcCCCcEEEecccc
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ------------EERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~------------~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
+||.++....+..+++.|...++.+.+..|.+-. ..+.+.+.....+--.|++|||.-
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D 70 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPD 70 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SS
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCC
Confidence 4788999999999999997666788888886521 233566666656677899999953
No 288
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=73.31 E-value=3.4 Score=38.93 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=22.0
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.+++.+++|.+ +++.++|||||||+.
T Consensus 63 ~plv~~~~~G~n~~i~ayG~tgSGKT~Tm 91 (341)
T cd01372 63 APLVDGLFEGYNATVLAYGQTGSGKTYTM 91 (341)
T ss_pred HHHHHHHhCCCccceeeecCCCCCCcEEe
Confidence 456778899987 478899999999864
No 289
>PLN03188 kinesin-12 family protein; Provisional
Probab=73.16 E-value=3.2 Score=44.92 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
..++..++.|.+ +++-++|||||||+.
T Consensus 155 ~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 155 APLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 457788899987 578899999999865
No 290
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=72.92 E-value=51 Score=29.61 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=68.0
Q ss_pred HHHHHHHhhcc-CCceEEeecCCCcHHHHHHHHHhcC------CC-----EEE-EeCCCCccCCCCcceEEEEEechhhH
Q psy7790 203 EDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALV------KP-----ITI-NVGRAGKIMPSMNVVQEVEYVKQEAK 269 (367)
Q Consensus 203 ~~v~~Il~~l~-~~~Q~il~SAT~~~~v~~l~~~~l~------~~-----~~i-~~~~~~~~~~~~~i~~~~~~~~~~~k 269 (367)
.++-.+++.+. .+..++.+|+-.+.-....++..-. +. ..+ ................-+.++....|
T Consensus 84 ~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~K 163 (252)
T PF11019_consen 84 SDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDK 163 (252)
T ss_pred hhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCcc
Confidence 66666776664 4567888888765433333322211 11 011 00000110123344555677777788
Q ss_pred HHHHHHHHhhcC--CCeEEee-ccHHHHHHHHHHHHhCCCeEEEEecC
Q psy7790 270 IVYLLECLQKTE--PPVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGG 314 (367)
Q Consensus 270 ~~~l~~~l~~~~--~~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~ 314 (367)
=..|..+|...+ ++.|||+ ++.+....+..+++..|+.+..+|=.
T Consensus 164 G~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 164 GEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred HHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 788888887654 5677777 56778999999999999999888854
No 291
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=72.76 E-value=1.6 Score=34.07 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=12.2
Q ss_pred ccccccccccCCcc
Q psy7790 109 KALMGVAELAKGIQ 122 (367)
Q Consensus 109 ~d~~~~a~TgsGKT 122 (367)
+.++..++||+|||
T Consensus 1 ~~~~i~~~~G~GKT 14 (144)
T cd00046 1 RDVLLAAPTGSGKT 14 (144)
T ss_pred CCEEEECCCCCchh
Confidence 35788999999999
No 292
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=72.74 E-value=3.6 Score=32.23 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC--eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV--EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~ 316 (367)
..+++|||++-..+...+..|...|+ ++..+.||+.
T Consensus 72 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 72 DSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 45799999998888899999999999 6999999974
No 293
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=72.12 E-value=1.5 Score=41.20 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
..++..++.|.+ +++.++|||||||++
T Consensus 64 ~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm 92 (335)
T PF00225_consen 64 SPLVDSVLDGYNATIFAYGQTGSGKTYTM 92 (335)
T ss_dssp HHHHHHHHTT-EEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhcCCceEEEeeccccccccccc
Confidence 457788899988 467789999999754
No 294
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=72.02 E-value=1.8 Score=40.37 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=28.1
Q ss_pred HHHHHHHhHhcc-cccccccccCCccccCcccccccCCcc
Q psy7790 98 EEKILRSVAETK-ALMGVAELAKGIQYNDPIKTSWRAPRC 136 (367)
Q Consensus 98 Q~~~i~~i~~g~-d~~~~a~TgsGKT~~~p~~~~~~~~~~ 136 (367)
+.+.+-.+..++ ++++++.||||||-.+-.+..+.|+.+
T Consensus 162 ~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~e 201 (355)
T COG4962 162 AAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDE 201 (355)
T ss_pred HHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcc
Confidence 777777777665 999999999999944444445555443
No 295
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=71.95 E-value=3.6 Score=38.61 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHhcccc--cccccccCCccccC
Q psy7790 96 KEEEKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+....++..++.|.+. ++.++|||||||++
T Consensus 66 ~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl 97 (335)
T smart00129 66 ETAAPLVDSVLEGYNATIFAYGQTGSGKTYTM 97 (335)
T ss_pred HHHHHHHHHHhcCCceeEEEeCCCCCCCceEe
Confidence 3356677888899875 57899999999764
No 296
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=71.83 E-value=1.1 Score=46.82 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=23.6
Q ss_pred CeEEeeccHHHHHHHHHHHHhCCCeEEEEe
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLKGVEAVAIH 312 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh 312 (367)
.+.|.+.+...+..+...|...|++....-
T Consensus 344 diAVL~R~~~~~~~le~~L~~~gIPy~~~g 373 (715)
T TIGR01075 344 ECAVLYRSNAQSRVLEEALLQASIPYRIYG 373 (715)
T ss_pred CEEEEEecCchHHHHHHHHHHcCCCEEEeC
Confidence 377778888888888888888888876553
No 297
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=70.94 E-value=1.2 Score=46.47 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=27.2
Q ss_pred CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 320 (367)
.+.|.+.+......+...|...|+++... |+..--+|
T Consensus 349 diAVL~R~~~~~~~le~~L~~~gIPy~~~-g~~~f~~~ 385 (721)
T PRK11773 349 DCAILYRSNAQSRVLEEALLQAGIPYRIY-GGMRFFER 385 (721)
T ss_pred cEEEEEecchhHHHHHHHHHHCCCCEEEE-CCCCcccc
Confidence 47788888888999999999999887665 44333333
No 298
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=69.79 E-value=2.8 Score=39.32 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++.++|||||||++
T Consensus 67 ~p~v~~~~~G~~~~i~ayG~tgSGKT~tl 95 (329)
T cd01366 67 SPLVQSALDGYNVCIFAYGQTGSGKTYTM 95 (329)
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCCcEEe
Confidence 457788889988 467899999999754
No 299
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=69.67 E-value=7.1 Score=29.06 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..++++||++-..+...+..|...|+ ++..++||+.
T Consensus 54 ~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 54 ANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 45799999998888888999988877 6888999863
No 300
>KOG0242|consensus
Probab=69.48 E-value=2.7 Score=43.35 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHHHHHhHhccc--ccccccccCCccccCcccccccCCccccCCCHHHHHHHHh
Q psy7790 98 EEKILRSVAETKA--LMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR 150 (367)
Q Consensus 98 Q~~~i~~i~~g~d--~~~~a~TgsGKT~~~p~~~~~~~~~~i~~~~~~~~~~~~~ 150 (367)
=+.++..++.|.+ |++-++||+||||+.-- .-..|..+-....++++.+.+
T Consensus 75 tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G--~~~~PGii~la~~dif~~I~~ 127 (675)
T KOG0242|consen 75 TKPLLLSVLEGFNATVFAYGQTGSGKTYTMSG--SEDDPGIIPLAMKDIFEKIDK 127 (675)
T ss_pred cHHHHHHHhcCcccceeeecCCCCCCceEEec--cCCCCCeeehHHHHHHHHHHh
Confidence 3668899999966 78999999999986321 111234443344556666655
No 301
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=69.05 E-value=13 Score=39.04 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecCCC-HHHHHHHHHHHhcCCCcEEEecc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGGKD-QEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~-~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+.+++|.++|...|.+.++.+ ...|++++.+.|+++ ..+|..+. .++|+++|+
T Consensus 119 G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 119 GKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 557999999998877766665 456999999999999 88776443 389999995
No 302
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=69.00 E-value=2.7 Score=46.08 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhH----hc-ccccccccccCCcccc
Q psy7790 95 LKEEEKILRSVA----ET-KALMGVAELAKGIQYN 124 (367)
Q Consensus 95 ~~~Q~~~i~~i~----~g-~d~~~~a~TgsGKT~~ 124 (367)
...|.++|..+. .| +..+++++||||||++
T Consensus 415 R~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t 449 (1123)
T PRK11448 415 RYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT 449 (1123)
T ss_pred CHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH
Confidence 345888887765 34 6789999999999954
No 303
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=68.93 E-value=6.7 Score=30.00 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCCeEEeeccH--HHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKK--QDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~--~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++|||++. ..+..++..|...|+++..+.||+.
T Consensus 64 ~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 64 EKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 45799999875 3678888999999999999999964
No 304
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=68.49 E-value=3.3 Score=37.19 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=49.2
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC------CCCEEEE
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE------EIKHVIN 355 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~------~v~~VI~ 355 (367)
-++||||+...-.-...+.+++..-.+..+.|.... --..+. ...++.+.+|-.+||..++ +.+..||
T Consensus 63 mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~E--Dp~~i~----~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh 136 (275)
T PF12683_consen 63 MKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHE--DPEVIS----SAADIVVNPDEISRGYTIVWAAKKMGAKTFVH 136 (275)
T ss_dssp EEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHH----HHSSEEEE--HHHHHHHHHHHHHHTT-S-EEE
T ss_pred ccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcC--CHHHHh----hccCeEeccchhhccHHHHHHHHHcCCceEEE
Confidence 479999998887777777777665566667666432 223332 2478999999999999987 8899999
Q ss_pred cCCCCCcc
Q psy7790 356 TEAKIKKR 363 (367)
Q Consensus 356 yd~P~~~~ 363 (367)
|.+|+...
T Consensus 137 ~sfprhms 144 (275)
T PF12683_consen 137 YSFPRHMS 144 (275)
T ss_dssp EEETTGGG
T ss_pred Eechhhcc
Confidence 99999875
No 305
>KOG0239|consensus
Probab=68.48 E-value=3 Score=42.94 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=22.6
Q ss_pred HHHHHHhHhccccc--ccccccCCccccC
Q psy7790 99 EKILRSVAETKALM--GVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~~--~~a~TgsGKT~~~ 125 (367)
...|..++.|.+++ +-++|||||||+.
T Consensus 382 ~~lv~S~lDGYnVCIFAYGQTGSGKTyTM 410 (670)
T KOG0239|consen 382 SPLVQSALDGYNVCIFAYGQTGSGKTYTM 410 (670)
T ss_pred HHHHHHHhcCcceeEEEecccCCCccccc
Confidence 55788999999985 6679999999864
No 306
>KOG1016|consensus
Probab=68.14 E-value=14 Score=38.34 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=65.9
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCC------------------CeEEEEecCCCHHHHHHHHHHHhcCC--C-cEEEecc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKG------------------VEAVAIHGGKDQEERTRSVESFRKGQ--K-DVMVATD 339 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~------------------~~~~~lhg~~~~~~R~~~~~~F~~g~--~-~vLVaTd 339 (367)
+.++|||..+....+.|.+.|.... .+-.-+.|..+..+|.+.+.+|.+-- . -+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4578999999998888988886542 23345678889999999999997632 2 3789999
Q ss_pred cccccCCcCCCCEEEEcCCCCCcc
Q psy7790 340 VASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 340 ~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
+...||++-....+|.||+-+++.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpc 822 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPC 822 (1387)
T ss_pred cccccceeeccceEEEEEeecCcc
Confidence 999999988888888898887753
No 307
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=68.02 E-value=13 Score=28.60 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..++++||++-..+..++..|...|+ ++..+.||+.
T Consensus 78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 78 DKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 45799999998888999999999998 5788888863
No 308
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=67.78 E-value=6 Score=29.63 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 61 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 61 GKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 456999999877778888899999994 888999864
No 309
>PF13245 AAA_19: Part of AAA domain
Probab=67.58 E-value=2.4 Score=30.34 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHhHhcccccc-cccccCCccc-cCcccccc-------cCCccccCCCHHHHHHHHhcc
Q psy7790 102 LRSVAETKALMG-VAELAKGIQY-NDPIKTSW-------RAPRCILSLPDQVHDIIRRNL 152 (367)
Q Consensus 102 i~~i~~g~d~~~-~a~TgsGKT~-~~p~~~~~-------~~~~~i~~~~~~~~~~~~~~~ 152 (367)
|...+.+..+++ .++.|||||. .......+ ...-.+.+.++..++.+++.+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 343333555554 9999999992 11111111 112345677888888887765
No 310
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=67.54 E-value=4.6 Score=41.32 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=56.0
Q ss_pred cccccccccccCCccccCcccccccCCccccCCCHHHHHHHHhc-cCeEEecCCCCcccccccc---CCCCHHHHHHHHH
Q psy7790 108 TKALMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRN-LRILVEGDDVPPACCSFRL---MKLPESLVRALEA 183 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~~~p~~~~~~~~~~i~~~~~~~~~~~~~~-~~i~~~g~~~~~~~~~f~~---l~~p~~ll~~l~~ 183 (367)
|-=++-++|-|-|||- +..-.++.+.++ +++.+||..-...++.-+. -.+||+++..+++
T Consensus 350 GpILcLVGPPGVGKTS----------------LgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkk 413 (782)
T COG0466 350 GPILCLVGPPGVGKTS----------------LGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKK 413 (782)
T ss_pred CcEEEEECCCCCCchh----------------HHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHH
Confidence 3345678999999992 122244555544 4677788766666666554 3599999999999
Q ss_pred cCCCCCChhhhhcccccchHHHHHHHhhccCCc
Q psy7790 184 KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQR 216 (367)
Q Consensus 184 ~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~ 216 (367)
.|..+| .++-+++..+-+.+++++
T Consensus 414 a~~~NP---------v~LLDEIDKm~ss~rGDP 437 (782)
T COG0466 414 AGVKNP---------VFLLDEIDKMGSSFRGDP 437 (782)
T ss_pred hCCcCC---------eEEeechhhccCCCCCCh
Confidence 988774 666666666666665543
No 311
>KOG1803|consensus
Probab=67.52 E-value=6.9 Score=39.21 Aligned_cols=54 Identities=9% Similarity=-0.048 Sum_probs=35.7
Q ss_pred HHHHHHHhHhcccc-cccccccCCccccCcccc--cc--cCCccccCCCHHHHHHHHhc
Q psy7790 98 EEKILRSVAETKAL-MGVAELAKGIQYNDPIKT--SW--RAPRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 98 Q~~~i~~i~~g~d~-~~~a~TgsGKT~~~p~~~--~~--~~~~~i~~~~~~~~~~~~~~ 151 (367)
|++++......+++ +.++|.|+||||++--.- .. ...-++.++++.-.+.+..+
T Consensus 190 Qk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 190 QKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred HHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHH
Confidence 88888888888665 678999999997543211 11 12334567777766666654
No 312
>KOG0385|consensus
Probab=67.44 E-value=34 Score=35.56 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=41.7
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhc-CCCcEEEecc
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRK-GQKDVMVATD 339 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~-g~~~vLVaTd 339 (367)
..++|.||-|+-.-.-.+. +.++.. +++++.|||+ +++|...++.+.. |+.+|+|+|=
T Consensus 215 ~~~GPfLVi~P~StL~NW~-~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWM-NEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCCeEEEeeHhhHHHHH-HHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 3468999999855433333 333333 7899999999 6888888876654 5888999884
No 313
>KOG0701|consensus
Probab=67.43 E-value=2.4 Score=47.31 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=64.0
Q ss_pred CeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCH-----------HHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQ-----------EERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~-----------~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
-.|+||+.+..+..+.+.++.. .+.+..+.|.+.+ ..+..++..|..-.+.+|++|.++.-|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 3699999888887777777544 2334445554422 235678899999999999999999999999999
Q ss_pred CEEEEcCCCCCcccc
Q psy7790 351 KHVINTEAKIKKREH 365 (367)
Q Consensus 351 ~~VI~yd~P~~~~~Y 365 (367)
..|+.++.|..-..|
T Consensus 374 ~~~~~~~~~~~~~~~ 388 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSY 388 (1606)
T ss_pred hhheeccCcchHHHH
Confidence 999999999765544
No 314
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=66.75 E-value=6.3 Score=31.19 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCeEEeec-cHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAE-KKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~-s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++|||. +-..+...+..|+..|+++..+.||+.
T Consensus 86 ~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 86 DPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 457999996 556677788888888999999999974
No 315
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=66.22 E-value=35 Score=35.34 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=56.0
Q ss_pred echhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCe-EEEE--------------------ec-----CCC
Q psy7790 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVE-AVAI--------------------HG-----GKD 316 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~-~~~l--------------------hg-----~~~ 316 (367)
+....|...+..++...+.++||-+++...+..+++.|... +-+ +..+ +. .--
T Consensus 40 l~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~ 119 (652)
T PRK05298 40 VTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEI 119 (652)
T ss_pred CCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHH
Confidence 34456666667777766778999999999999999999655 323 4434 11 111
Q ss_pred HHHHHHHHHHHhcCCCcEEEecccccccC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATDVASKGL 345 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd~~~rGl 345 (367)
...|..++.++..++..|+|+|-.+-+++
T Consensus 120 ~~~R~~~l~~L~~~~~~ivv~s~~al~~~ 148 (652)
T PRK05298 120 ERLRHSATKSLLERRDVIVVASVSCIYGL 148 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcHHHhcCC
Confidence 45688999999988766777765443443
No 316
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=66.15 E-value=14 Score=27.52 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=30.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||++-..+...+..|...|+. +..+.||+.
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 457999999988888899999999984 788999965
No 317
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=65.87 E-value=55 Score=29.35 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=43.8
Q ss_pred hcCCCEEEEeCCCCccCCCCcceEEEEEechhh-HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCC
Q psy7790 236 ALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGV 306 (367)
Q Consensus 236 ~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~ 306 (367)
.+.|.+.+..+.........++...+...+... -+..+.+.|.. ++.+.+|+++.+.++.+...|+..|+
T Consensus 143 ~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkp-gg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 143 GLGDRVTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKP-GGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccccceEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 445555555543322112234444555554443 45555555544 57899999999999999999998864
No 318
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=65.86 E-value=30 Score=27.84 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=39.5
Q ss_pred HHHHHHHh---hcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCc
Q psy7790 271 VYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDF 347 (367)
Q Consensus 271 ~~l~~~l~---~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi 347 (367)
..+.+++. ..+.+++|+|++.+.++.|-+.|-...-....-|+-.... ......|+|+++... -..
T Consensus 16 ~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~~ 84 (137)
T PF04364_consen 16 RFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NPN 84 (137)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS------
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CCC
Confidence 44444444 4577899999999999999999966654445555542211 112247999987532 123
Q ss_pred CCCCEEEEcCC
Q psy7790 348 EEIKHVINTEA 358 (367)
Q Consensus 348 ~~v~~VI~yd~ 358 (367)
+.-+++||.+.
T Consensus 85 ~~~~vLinL~~ 95 (137)
T PF04364_consen 85 NHADVLINLSG 95 (137)
T ss_dssp S--SEEEE--S
T ss_pred CCCCEEEECCC
Confidence 34678888764
No 319
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=65.46 E-value=5.6 Score=34.06 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=48.7
Q ss_pred HhcccccccccccCCcc-ccCcccccccC--------CccccCCCHHHHHHHHhccCeEEecCCCCccccccccCCC---
Q psy7790 106 AETKALMGVAELAKGIQ-YNDPIKTSWRA--------PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKL--- 173 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT-~~~p~~~~~~~--------~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~l~~--- 173 (367)
-.|.=+..+++.|+||| |.--+.....| -..+..+...+.-.+|++.++..-.-.+-+....++++++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 34556688999999999 31111111122 2224555566666677766665444333344444444332
Q ss_pred ---------CHHHHHHHHHcCCCCCChhhhhcccccch
Q psy7790 174 ---------PESLVRALEAKGIKKPTPIQVQGIPAALS 202 (367)
Q Consensus 174 ---------p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~ 202 (367)
..++...|..-|+.. ...++|.-|+
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~----k~~~lP~~LS 139 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKH----KARALPSQLS 139 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccch----hhhcCccccC
Confidence 344555555555543 2455565555
No 320
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=65.13 E-value=34 Score=23.82 Aligned_cols=56 Identities=30% Similarity=0.328 Sum_probs=40.1
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
.|+.|+...++..+...+.. +..+.+..|.....+....++.+... ..|++|+|--
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D 57 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPD 57 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCC
Confidence 57889999999888887632 34666666766555666677776554 6799999943
No 321
>KOG1802|consensus
Probab=64.98 E-value=49 Score=33.96 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=49.2
Q ss_pred HHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEE
Q psy7790 231 NFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVA 310 (367)
Q Consensus 231 ~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 310 (367)
...+..|.+|+.+.-+.++. -..+ --...++.+...+.+++||-++|.-.++.|++.+...|+++.-
T Consensus 417 ~AV~~VL~rplsLIQGPPGT---GKTv----------tsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvR 483 (935)
T KOG1802|consen 417 NAVKHVLQRPLSLIQGPPGT---GKTV----------TSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVR 483 (935)
T ss_pred HHHHHHHcCCceeeecCCCC---Ccee----------hhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEee
Confidence 34556778888877776554 1111 1122345556668899999999999999999999999888776
Q ss_pred Eec
Q psy7790 311 IHG 313 (367)
Q Consensus 311 lhg 313 (367)
+.+
T Consensus 484 l~a 486 (935)
T KOG1802|consen 484 LCA 486 (935)
T ss_pred eeh
Confidence 543
No 322
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.95 E-value=2.1 Score=39.52 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=15.4
Q ss_pred HhcccccccccccCCcccc
Q psy7790 106 AETKALMGVAELAKGIQYN 124 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT~~ 124 (367)
++.-+++.++|||||||+.
T Consensus 95 L~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeeccEEEECCCCCcHHHH
Confidence 4456789999999999953
No 323
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.89 E-value=8.9 Score=33.01 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHHhhccCCceEEeecCCCcHHHHHHHHHh
Q psy7790 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSA 236 (367)
Q Consensus 203 ~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~ 236 (367)
+++..+++.+....-.+.+|||...+....+..+
T Consensus 103 ~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 103 EELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp HHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred HHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 6777777777777778888999987755444443
No 324
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=64.67 E-value=4.2 Score=37.99 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHH-hHhcccccccccccCCcc
Q psy7790 98 EEKILRS-VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~-i~~g~d~~~~a~TgsGKT 122 (367)
|.+.|.. +..+++++.+++||||||
T Consensus 133 ~~~~L~~~v~~~~nilI~G~tGSGKT 158 (323)
T PRK13833 133 QASVIRSAIDSRLNIVISGGTGSGKT 158 (323)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHH
Confidence 4444444 557789999999999999
No 325
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=64.60 E-value=5.6 Score=38.13 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=26.3
Q ss_pred cccccccccCCcc--ccCcccccccCCccccCCCHHHHHH
Q psy7790 110 ALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDI 147 (367)
Q Consensus 110 d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~ 147 (367)
+++++|+|||||| +..|-.-.|..+-.+.-+..+.+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~ 40 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFEL 40 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHH
Confidence 3678999999999 6677666665555555555666543
No 326
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=64.41 E-value=2.6 Score=39.75 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.4
Q ss_pred HHHHH-hHhcccccccccccCCcc
Q psy7790 100 KILRS-VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 100 ~~i~~-i~~g~d~~~~a~TgsGKT 122 (367)
+.+.. +..+++++++++||||||
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKT 176 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKT 176 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHH
Confidence 34443 457899999999999999
No 327
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=64.40 E-value=67 Score=30.87 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=57.8
Q ss_pred chhhHHHHHHHHHhhc----------CCCeEEeeccHHHHHHHHHHHHhCCC--eEEEEecCCCHHHHHHHHHHHhcCCC
Q psy7790 265 KQEAKIVYLLECLQKT----------EPPVLIFAEKKQDVDAIHEYLLLKGV--EAVAIHGGKDQEERTRSVESFRKGQK 332 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~~----------~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~~~~F~~g~~ 332 (367)
....++..|-.+|... .+.+.|.+++..++++..+.|.+.++ ++..+. .++++.++...+..+
T Consensus 167 s~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~~---~~~~~~~ie~~L~~~-- 241 (393)
T PRK15327 167 SPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVIN---ENEENKRVSTWLDTY-- 241 (393)
T ss_pred chHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEec---hHHHHHHHHHHHHhc--
Confidence 3445888888888753 35689999999999999999988654 455542 566777777666544
Q ss_pred cEEEecccccccCCcCCCC-EEEEcCCCCCcc
Q psy7790 333 DVMVATDVASKGLDFEEIK-HVINTEAKIKKR 363 (367)
Q Consensus 333 ~vLVaTd~~~rGlDi~~v~-~VI~yd~P~~~~ 363 (367)
+|+++ +-|+|+-|..|.
T Consensus 242 --------------~P~l~~lkv~l~~P~~Pv 259 (393)
T PRK15327 242 --------------YPQLAYYRLHFDEPRKPV 259 (393)
T ss_pred --------------CCCceEEEEECCCCCCCE
Confidence 56666 667777777664
No 328
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=64.11 E-value=9.8 Score=27.93 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|+|++-..+...+..|...|+ ++..+.||+.
T Consensus 56 ~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 56 DRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 45799999999999999999999998 5778888863
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=63.96 E-value=4.4 Score=37.43 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=18.8
Q ss_pred HHHHHHH-hHhcccccccccccCCcc
Q psy7790 98 EEKILRS-VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~-i~~g~d~~~~a~TgsGKT 122 (367)
+.+.+.. +..++.++.+++||||||
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKT 146 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKT 146 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHH
Confidence 3344443 456789999999999999
No 330
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=63.94 E-value=4.8 Score=36.36 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.6
Q ss_pred HHHHHHHhHhcccccccccccCCcc
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
=++++..+..|++++..+++|+|||
T Consensus 11 ~~~~l~~l~~g~~vLL~G~~GtGKT 35 (262)
T TIGR02640 11 TSRALRYLKSGYPVHLRGPAGTGKT 35 (262)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCCHH
Confidence 3556777888999999999999999
No 331
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=63.73 E-value=3 Score=39.20 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=16.3
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+..+++++++++||||||
T Consensus 157 v~~~~nili~G~tgSGKT 174 (332)
T PRK13900 157 VISKKNIIISGGTSTGKT 174 (332)
T ss_pred HHcCCcEEEECCCCCCHH
Confidence 457899999999999999
No 332
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=63.54 E-value=7.9 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=30.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 66 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 66 DKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 45799999998888899999999998 4777888864
No 333
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=63.14 E-value=9.3 Score=28.69 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+...+...+..|...|+. +..+.||+.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 456999998877888888899999985 778999974
No 334
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.06 E-value=4.9 Score=35.65 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=49.2
Q ss_pred hHhcccccccccccCCcc-ccCcccccccCC--------ccccCCCHHHHHHHHhccCeEEecCCCCcccccccc-----
Q psy7790 105 VAETKALMGVAELAKGIQ-YNDPIKTSWRAP--------RCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL----- 170 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT-~~~p~~~~~~~~--------~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~----- 170 (367)
+..|+-+...++.|+||| ..--+.-.+.|. ..+..++++....++++++++--+...=..+.-|++
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl 110 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL 110 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheeh
Confidence 346777788999999999 322233333442 225677888888999888877644433333444444
Q ss_pred ---CCCCHHHHHHHHH
Q psy7790 171 ---MKLPESLVRALEA 183 (367)
Q Consensus 171 ---l~~p~~ll~~l~~ 183 (367)
..+|.++++.+..
T Consensus 111 re~~~lp~~~i~~lv~ 126 (263)
T COG1127 111 REHTKLPESLIRELVL 126 (263)
T ss_pred HhhccCCHHHHHHHHH
Confidence 3467777766543
No 335
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=62.64 E-value=18 Score=37.04 Aligned_cols=58 Identities=3% Similarity=-0.081 Sum_probs=41.0
Q ss_pred HHHHHHHHHhHhcccccccccccCCccccCc-cccc----cc-C--CccccCCCHHHHHHHHhccC
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQYNDP-IKTS----WR-A--PRCILSLPDQVHDIIRRNLR 153 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-~~~~----~~-~--~~~i~~~~~~~~~~~~~~~~ 153 (367)
..|+.++...+..+-.+..++.|+|||++.- ++.. .. + .-.+.+++..-+..+++..+
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 4599999999999999999999999994321 1111 11 1 23357889888888887544
No 336
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=62.44 E-value=15 Score=33.86 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=25.7
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
-|.|..+-...--+....+..|+.+-.+||+++
T Consensus 267 rl~f~g~~~~~plis~~~~~~~v~~nIl~G~I~ 299 (339)
T COG1135 267 RLTFTGESADQPLLSEVARRFGVDVNILSGNID 299 (339)
T ss_pred EEEecCccccchHHHHHHHHhCCceEEEecchh
Confidence 467887777777777777888888888898854
No 337
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.15 E-value=5.7 Score=36.16 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHH-hHhcccccccccccCCcc
Q psy7790 99 EKILRS-VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 99 ~~~i~~-i~~g~d~~~~a~TgsGKT 122 (367)
..++.. +..++.++.++++|+|||
T Consensus 23 ~~ll~~l~~~~~pvLl~G~~GtGKT 47 (272)
T PF12775_consen 23 SYLLDLLLSNGRPVLLVGPSGTGKT 47 (272)
T ss_dssp HHHHHHHHHCTEEEEEESSTTSSHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCchh
Confidence 445555 457899999999999999
No 338
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=62.00 E-value=12 Score=27.60 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=28.4
Q ss_pred CCCeEEeecc--HHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEK--KQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s--~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+ +..+...+..|...|+ ++..+.||+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 4579999998 4556788888988887 5788888874
No 339
>PHA02558 uvsW UvsW helicase; Provisional
Probab=61.90 E-value=30 Score=34.53 Aligned_cols=67 Identities=21% Similarity=0.151 Sum_probs=44.0
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCC----CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-ccc-cc-CCcCCCCE
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKG----VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-VAS-KG-LDFEEIKH 352 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-~~~-rG-lDi~~v~~ 352 (367)
...++||.|+|++.+.++.+.|...+ ..+..+.||... .....|+|+|. .+. ++ ..+.++++
T Consensus 157 ~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~-----------~~~~~I~VaT~qsl~~~~~~~~~~~~~ 225 (501)
T PHA02558 157 YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAK-----------DTDAPIVVSTWQSAVKQPKEWFDQFGM 225 (501)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCccc-----------CCCCCEEEeeHHHHhhchhhhccccCE
Confidence 34489999999999999999987653 234455555331 13468999994 222 22 13567888
Q ss_pred EEEcC
Q psy7790 353 VINTE 357 (367)
Q Consensus 353 VI~yd 357 (367)
||--+
T Consensus 226 iIvDE 230 (501)
T PHA02558 226 VIVDE 230 (501)
T ss_pred EEEEc
Confidence 87654
No 340
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=61.67 E-value=6.8 Score=29.23 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=29.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 61 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 61 DKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 457999998877788888999999986 888888863
No 341
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=61.52 E-value=2.3 Score=43.97 Aligned_cols=55 Identities=9% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHHHHHHHHhHhcccccccccccCCccccC-----ccccc-ccCCccccCC--CHHHHHHHHhcc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQYND-----PIKTS-WRAPRCILSL--PDQVHDIIRRNL 152 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~-----p~~~~-~~~~~~i~~~--~~~~~~~~~~~~ 152 (367)
++|++++.+ ...++++.|.-|||||.++ -++.. -.+|..|..+ ++.-+..++..+
T Consensus 4 ~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl 66 (664)
T TIGR01074 4 PQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERV 66 (664)
T ss_pred HHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHH
Confidence 348888765 3568999999999999211 11111 1245566666 677777776654
No 342
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=61.04 E-value=5.4 Score=33.91 Aligned_cols=25 Identities=16% Similarity=0.144 Sum_probs=19.6
Q ss_pred HHHHHHH-hHhcccccccccccCCcc
Q psy7790 98 EEKILRS-VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~-i~~g~d~~~~a~TgsGKT 122 (367)
+.+.+.. +..|+.++.+++||+|||
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKT 39 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKT 39 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHH
Confidence 4555554 456888999999999999
No 343
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=60.52 E-value=2.2 Score=44.65 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=28.4
Q ss_pred CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 321 (367)
-+.|.|.+...+..+...|...|+++... |+.+--+|.
T Consensus 346 diAVL~R~~~~~~~l~~~L~~~gIP~~~~-g~~~f~~r~ 383 (726)
T TIGR01073 346 DFAILYRTNAQSRVFEETLLKANIPYKIV-GGLKFYDRK 383 (726)
T ss_pred CEEEEEeCchhHHHHHHHHHHcCCCEEEe-CCcccccCH
Confidence 47788888899999999999999987654 444444443
No 344
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=60.25 E-value=5.2 Score=38.08 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHHHh------HhcccccccccccCCccccCc
Q psy7790 96 KEEEKILRSV------AETKALMGVAELAKGIQYNDP 126 (367)
Q Consensus 96 ~~Q~~~i~~i------~~g~d~~~~a~TgsGKT~~~p 126 (367)
++|+.++..+ .+|..+.+.++-|+||||.+-
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~ 40 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK 40 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH
Confidence 4588887777 788899999999999996543
No 345
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=59.85 E-value=6.3 Score=30.92 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=17.5
Q ss_pred HHHHhHh--cccccccccccCCccc
Q psy7790 101 ILRSVAE--TKALMGVAELAKGIQY 123 (367)
Q Consensus 101 ~i~~i~~--g~d~~~~a~TgsGKT~ 123 (367)
+...+.. ++.++..+++|+|||.
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTT 34 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHH
Confidence 3344444 7889999999999993
No 346
>KOG0246|consensus
Probab=59.38 E-value=5 Score=39.71 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=20.6
Q ss_pred HHHHHHhHhc-c-cccccccccCCccccC
Q psy7790 99 EKILRSVAET-K-ALMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g-~-d~~~~a~TgsGKT~~~ 125 (367)
+-++++|.+| . -.++-++|||||||+.
T Consensus 281 ~PlV~~IF~~G~ATCFAYGQTGSGKT~TM 309 (676)
T KOG0246|consen 281 KPLVKTIFEGGMATCFAYGQTGSGKTYTM 309 (676)
T ss_pred hHHHHHHHhCCceeeeeeccCCCCceeec
Confidence 4567777765 3 3578899999999875
No 347
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=59.29 E-value=19 Score=27.94 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCCeEEeecc-HHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEK-KQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s-~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..++++||++ ...+...+..|+..|+. +..+-||+.
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 4569999998 57888888999999976 888889874
No 348
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=59.20 E-value=1.1e+02 Score=27.21 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=54.2
Q ss_pred EEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCeEE-EEecCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 262 EYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAV-AIHGGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 262 ~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
..+...+-+..|++.....+.++.++=.+...++.+++.|+.. |+.++ .+||..+.++...+++.......++|+
T Consensus 86 ~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 86 SRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred CeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3555666666777766665556666667777788888888543 77765 467888788888889999888888764
No 349
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=59.00 E-value=6 Score=36.95 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=19.9
Q ss_pred HHHHHHH-hHhcccccccccccCCcc
Q psy7790 98 EEKILRS-VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~-i~~g~d~~~~a~TgsGKT 122 (367)
|.+.+.. +..+++++.+++||||||
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKT 162 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKT 162 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHH
Confidence 4455554 567899999999999999
No 350
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=58.97 E-value=28 Score=36.80 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+.++-|.++|..-|.+.++.+ ...|+++..+.|+++..+|..+.. .+|+++|+
T Consensus 122 G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 445778899987766666555 556999999999999999988863 78999998
No 351
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=58.97 E-value=16 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=29.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..++||||.+...+..++..|...|+ ++..+-||+.
T Consensus 50 ~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 50 DKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 45799999998899999999999865 5777888864
No 352
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=58.82 E-value=88 Score=28.09 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=56.0
Q ss_pred EEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEe-cCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 262 EYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIH-GGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 262 ~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh-g~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
.+|..-+-+..|++.....+.++-.+=.+..-++..+..|+.. +++++..| |..+..+...++++....+.+||.
T Consensus 89 ~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 89 ERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred ccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 4566666677777776666555666667777788888888766 46777766 888888888999999988888764
No 353
>KOG0383|consensus
Probab=58.62 E-value=7.4 Score=40.02 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=56.4
Q ss_pred hhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc---CCCcEEEeccccccc
Q psy7790 278 QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK---GQKDVMVATDVASKG 344 (367)
Q Consensus 278 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~vLVaTd~~~rG 344 (367)
...+.+++||..-....+-+..++...+ ....+.|..+-.+|+.++.+|.. .+...|+||-+.+.|
T Consensus 628 ~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 628 KSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3456799999999999999999999988 88899999999999999999983 345678999876654
No 354
>KOG0243|consensus
Probab=57.84 E-value=5.4 Score=42.46 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=19.8
Q ss_pred HHHHhHhccc--ccccccccCCccccC
Q psy7790 101 ILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 101 ~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+|.-++.|.+ +++-++||+||||+.
T Consensus 120 ~i~eVl~GyNCTIFAYGQTGTGKTyTM 146 (1041)
T KOG0243|consen 120 IIKEVLEGYNCTIFAYGQTGTGKTYTM 146 (1041)
T ss_pred HHHHHhccCCceEEEecCCCCCceeee
Confidence 4556778877 588999999999854
No 355
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=57.81 E-value=73 Score=33.97 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCeEEeeccHHHHHHHHHHHHh-C----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----cccccCCcCCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLL-K----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VASKGLDFEEIK 351 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~-~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~rGlDi~~v~ 351 (367)
+++||.++++..|..++..+.. . |..+....++-+. .+...+|+|+|+ .+....++.+++
T Consensus 49 ~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~----------~~~~t~I~v~T~G~Llr~l~~d~~L~~v~ 118 (812)
T PRK11664 49 GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK----------VGPNTRLEVVTEGILTRMIQRDPELSGVG 118 (812)
T ss_pred CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc----------cCCCCcEEEEChhHHHHHHhhCCCcCcCc
Confidence 4799999999999999998843 2 4455544443221 122347899998 233456788999
Q ss_pred EEEEcCC
Q psy7790 352 HVINTEA 358 (367)
Q Consensus 352 ~VI~yd~ 358 (367)
+||..++
T Consensus 119 ~IIlDEa 125 (812)
T PRK11664 119 LVILDEF 125 (812)
T ss_pred EEEEcCC
Confidence 9988765
No 356
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=57.43 E-value=3 Score=43.24 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=25.0
Q ss_pred CeEEeeccHHHHHHHHHHHHhCCCeEEEEec
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHG 313 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg 313 (367)
.+-|.|.|...+..+...|...|+++....|
T Consensus 344 diAVL~Rs~~~~~~le~~L~~~gIP~~~~~~ 374 (672)
T PRK10919 344 DYAILYRGNHQSRVFEKFLMQNRIPYKISGG 374 (672)
T ss_pred cEEEEEeCchhHHHHHHHHHHcCCCEEEeCC
Confidence 4667788888999999999999998876543
No 357
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=57.40 E-value=7 Score=39.87 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=28.6
Q ss_pred ccccccccccCCcc--ccCcccccccCCccccCCCHHHHHH
Q psy7790 109 KALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDI 147 (367)
Q Consensus 109 ~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~ 147 (367)
..++++|+|||||| +..|-+-.|..+-.+.-+..+.+..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~ 199 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYEL 199 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHH
Confidence 46899999999999 7888777776555555555555443
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=56.47 E-value=18 Score=31.73 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=15.0
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+..|.=+..++|.|||||
T Consensus 25 v~~Gevv~iiGpSGSGKS 42 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKS 42 (240)
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 346777788999999999
No 359
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=56.09 E-value=35 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 315 (367)
..++++||.+-..+...+..|...|+.....-||+
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 44688999998888889999999998654445774
No 360
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=55.88 E-value=83 Score=25.92 Aligned_cols=86 Identities=9% Similarity=0.187 Sum_probs=54.3
Q ss_pred EEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 260 EVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 260 ~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
.|+......+..++.+++.+ .+.+++|.|++...+..|=+.|=...-....-||...... .....|+|
T Consensus 5 ~FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~a~~PV~L 75 (154)
T PRK06646 5 SIYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------PEKQPIYI 75 (154)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------CCCCCEEE
Confidence 34455677777777777765 4678999999999999999999655434444465422110 12356888
Q ss_pred ecccccccCCcCCCCEEEEcCC
Q psy7790 337 ATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 337 aTd~~~rGlDi~~v~~VI~yd~ 358 (367)
+++. . +.++-+..||.+.
T Consensus 76 ~~~~--~--~p~~~~vLiNL~~ 93 (154)
T PRK06646 76 TDEL--Q--NPNNASVLVIISP 93 (154)
T ss_pred ecCC--C--CCCCCCEEEECCC
Confidence 7542 1 2225556777755
No 361
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=55.47 E-value=77 Score=25.62 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=52.0
Q ss_pred chhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEe-ccc
Q psy7790 265 KQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA-TDV 340 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa-Td~ 340 (367)
....+...+..++.+ .+.+++|+|.+.+.++.|-+.|=...-....-|+-.... ......|+|+ ++
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~- 79 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPG- 79 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCC-
Confidence 455666666666655 467899999999999999999966544444445532211 0234578887 32
Q ss_pred ccccCCcCCCCEEEEcCC
Q psy7790 341 ASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 341 ~~rGlDi~~v~~VI~yd~ 358 (367)
.-+.++-+++||.+-
T Consensus 80 ---~~~~~~~~~LinL~~ 94 (142)
T PRK05728 80 ---KRNANHRDLLINLDG 94 (142)
T ss_pred ---CCCCCCCcEEEECCC
Confidence 123455677888754
No 362
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=55.25 E-value=57 Score=34.86 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=44.2
Q ss_pred cCCCeEEeeccH----HHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc
Q psy7790 280 TEPPVLIFAEKK----QDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 280 ~~~~~iVF~~s~----~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
.+.++-|.++|. .+++++...+...|++|.++.+++++.+|..+.. ++|+.+|...
T Consensus 122 ~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 345677778775 4556666666777999999999999999998885 8999999853
No 363
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=55.23 E-value=6.7 Score=35.44 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHH-hHhcccccccccccCCcc
Q psy7790 98 EEKILRS-VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~-i~~g~d~~~~a~TgsGKT 122 (367)
..+.+.. +..+..++.+++||||||
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKT 141 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKT 141 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHH
T ss_pred HHHHHhhccccceEEEEECCCccccc
Confidence 3444443 456789999999999999
No 364
>KOG0240|consensus
Probab=55.05 E-value=7.6 Score=38.46 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHhHhccc--ccccccccCCcccc
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYN 124 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~ 124 (367)
..++.-++.|.+ +++.++||+||||+
T Consensus 72 ~~Iv~dVL~GYNGTvfaYGqT~sGKTyt 99 (607)
T KOG0240|consen 72 KPIVDDVLLGYNGTVFAYGQTGSGKTYT 99 (607)
T ss_pred HHHHHHHhcccceeEEEecCCCCCccee
Confidence 445566777865 78899999999974
No 365
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=54.77 E-value=80 Score=28.05 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc---CCCcEEEecccccccCC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK---GQKDVMVATDVASKGLD 346 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~vLVaTd~~~rGlD 346 (367)
+..+++.|+..|+..|+.+. .+.+++..+-.++++.|.+ ...+++|+. .++.|..
T Consensus 30 ~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG~~ 87 (243)
T cd00032 30 TDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHGEE 87 (243)
T ss_pred hHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCCCC
Confidence 35789999999999999875 5778899999999999985 334444433 5666754
No 366
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=54.49 E-value=30 Score=28.10 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=30.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|+|.+...+..++..|...|+ ++..+.||+.
T Consensus 49 ~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 49 AERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 35799999998888888899998888 7999999953
No 367
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=54.48 E-value=27 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHH
Q psy7790 267 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEY 300 (367)
Q Consensus 267 ~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~ 300 (367)
.+.+..+.+.|...++|+++||.|-..+-.++..
T Consensus 72 ~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 72 EEDVEAFADALESLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHH
Confidence 4567778888888888999999998888776653
No 368
>KOG0245|consensus
Probab=54.44 E-value=9.9 Score=40.39 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHHHHHhHhccccc--ccccccCCccccCcccccccCCccccCCCHHHHHHHHh
Q psy7790 98 EEKILRSVAETKALM--GVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR 150 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~--~~a~TgsGKT~~~p~~~~~~~~~~i~~~~~~~~~~~~~ 150 (367)
-..+|.++.+|-+++ +-++|||||||+.==..--..+..|-.+..+++.++..
T Consensus 76 g~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~ 130 (1221)
T KOG0245|consen 76 GREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIAD 130 (1221)
T ss_pred hHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhh
Confidence 467889999999864 77899999998642211111122333444555555554
No 369
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=54.42 E-value=8.7 Score=39.53 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=29.8
Q ss_pred ccccccccccCCcc--ccCcccccccCCccccCCCHHHHHH
Q psy7790 109 KALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDI 147 (367)
Q Consensus 109 ~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~ 147 (367)
..++++|+|||||| +..|-+-.|..+..+.-+..+.+..
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~ 216 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWAL 216 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHH
Confidence 57899999999999 7788777776666666666666553
No 370
>KOG1001|consensus
Probab=54.35 E-value=3.1 Score=42.80 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHhhcC----CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC-cE-EEecc
Q psy7790 266 QEAKIVYLLECLQKTE----PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK-DV-MVATD 339 (367)
Q Consensus 266 ~~~k~~~l~~~l~~~~----~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~-~v-LVaTd 339 (367)
...|+..++.+|.... ++++||+.-...+.-+.-.|...++....+-|.|+...|.+.+..|..+.. .| +++.-
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 4567777777776421 489999999999999988888889999999999999999999999996543 33 46677
Q ss_pred cccccCCcCCCCEEEEcCCCCCcc
Q psy7790 340 VASKGLDFEEIKHVINTEAKIKKR 363 (367)
Q Consensus 340 ~~~rGlDi~~v~~VI~yd~P~~~~ 363 (367)
+.+-||++--..||+..|+=+||.
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~ 623 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPA 623 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChH
Confidence 788999999999999988766653
No 371
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=54.21 E-value=5.3 Score=44.47 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHhcccccccccccCCccc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQY 123 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~ 123 (367)
++|.++|. ..|+++++.|..|||||+
T Consensus 4 ~~Q~~ai~--~~~~~~lv~A~AGsGKT~ 29 (1232)
T TIGR02785 4 DEQWQAIY--TRGQNILVSASAGSGKTA 29 (1232)
T ss_pred HHHHHHHh--CCCCCEEEEecCCCcHHH
Confidence 34888887 468999999999999993
No 372
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=53.47 E-value=76 Score=27.42 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecC----CCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 266 QEAKIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGG----KDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 266 ~~~k~~~l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~----~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
...-...|++.+... .+..|++......-..+.+.|...|..+..+.=. .+.. ....+.|..+..++++-|.
T Consensus 104 ~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~--~~~~~~l~~~~~~~iiftS 181 (239)
T cd06578 104 EEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLD--AELLELLEEGAIDAVLFTS 181 (239)
T ss_pred CccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCc--HHHHHHHHcCCCcEEEEeC
Confidence 334456677777775 4455555555666678889998888765554211 1111 3345667777776777665
No 373
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=53.04 E-value=39 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=28.6
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
.++++||.+-..+...+..|...|+......||+.
T Consensus 61 ~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 61 DTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 45999999988888889999999987666678753
No 374
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=52.95 E-value=37 Score=28.39 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=28.3
Q ss_pred hcccccccccccCCccccCcccccccCC------------ccccCCCHHHHHHHHhccC
Q psy7790 107 ETKALMGVAELAKGIQYNDPIKTSWRAP------------RCILSLPDQVHDIIRRNLR 153 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT~~~p~~~~~~~~------------~~i~~~~~~~~~~~~~~~~ 153 (367)
+|.-++..+|.|.||+-.+-.++.+.-| +.-..+++.....+|...+
T Consensus 27 ~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 5777888999999999333333322221 1234566677777777543
No 375
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=52.79 E-value=6.5 Score=38.74 Aligned_cols=38 Identities=5% Similarity=0.122 Sum_probs=25.0
Q ss_pred ccccccccccCCcc--ccCcccccccCCccccCCCHHHHH
Q psy7790 109 KALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHD 146 (367)
Q Consensus 109 ~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~ 146 (367)
.+++++|+|||||| +..|.+-.|..+-.+.-+..+.+.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~ 84 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYE 84 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHH
Confidence 46899999999999 667766555543344444444443
No 376
>KOG2004|consensus
Probab=52.75 E-value=13 Score=38.32 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=55.8
Q ss_pred HHHHHHhH--------hcccccccccccCCccccCcccccccCCccccCCCHHHHHHHHhc-cCeEEecCCCCccccccc
Q psy7790 99 EKILRSVA--------ETKALMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRN-LRILVEGDDVPPACCSFR 169 (367)
Q Consensus 99 ~~~i~~i~--------~g~d~~~~a~TgsGKT~~~p~~~~~~~~~~i~~~~~~~~~~~~~~-~~i~~~g~~~~~~~~~f~ 169 (367)
+.+++.+. +|+=++-++|.|-|||-. .+-.+..+.++ ++..+||..-...++.-+
T Consensus 421 eRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI----------------~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 421 ERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI----------------AKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred HHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH----------------HHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 45666553 466678889999999921 11233444433 567788864444555444
Q ss_pred c---CCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHh
Q psy7790 170 L---MKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFS 210 (367)
Q Consensus 170 ~---l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~ 210 (367)
. -+.||++++.|++.+..+| .+|-++|..|-+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP---------liLiDEvDKlG~ 519 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP---------LILIDEVDKLGS 519 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc---------eEEeehhhhhCC
Confidence 3 3689999999999888774 555556655554
No 377
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=52.70 E-value=6.9 Score=29.19 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCeEEEEecCC----CHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 296 AIHEYLLLKGVEAVAIHGGK----DQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 296 ~l~~~L~~~~~~~~~lhg~~----~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
-.+.+|+..|+.|..+.... ...-|..+++.+++|+++++|.|.-
T Consensus 21 gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 21 GTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 34577788899854443322 2233446999999999999998863
No 378
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=52.62 E-value=19 Score=26.46 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=29.4
Q ss_pred HHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 298 HEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 298 ~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
+.+|+..|+++..+|..... .+..+++.+++|+++.+|.|..
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 56677789887544433321 2345899999999999999864
No 379
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=52.37 E-value=8.3 Score=39.82 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=28.2
Q ss_pred ccccccccccCCcc--ccCcccccccCCccccCCCHHHHHH
Q psy7790 109 KALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDI 147 (367)
Q Consensus 109 ~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~ 147 (367)
..++++|+|||||| |..|-+-.|..+-.+.-+..+.+..
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~ 180 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFEL 180 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHH
Confidence 47899999999999 7777766676555555555555543
No 380
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.79 E-value=4.8 Score=37.43 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHhHhcccccccccccCCcc
Q psy7790 101 ILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 101 ~i~~i~~g~d~~~~a~TgsGKT 122 (367)
+.-.+..+++++.+++||||||
T Consensus 136 L~~~ie~~~siii~G~t~sGKT 157 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKT 157 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHH
Confidence 5556678999999999999999
No 381
>KOG0351|consensus
Probab=51.52 E-value=33 Score=36.89 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEecc
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVATD 339 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVaTd 339 (367)
+-+||-.+-..-.+.....|...++.+..+||++...+|..+++.+++| .+++|--|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 3578888888888888888988999999999999999999999999999 888887776
No 382
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=51.30 E-value=5 Score=35.23 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=15.1
Q ss_pred hcccccccccccCCcccc
Q psy7790 107 ETKALMGVAELAKGIQYN 124 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT~~ 124 (367)
-++.+.+.|.||||||++
T Consensus 22 ~~~H~~I~G~TGsGKS~~ 39 (229)
T PF01935_consen 22 FNRHIAIFGTTGSGKSNT 39 (229)
T ss_pred ccceEEEECCCCCCHHHH
Confidence 357889999999999953
No 383
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.98 E-value=5.6 Score=36.54 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=11.1
Q ss_pred ccccccccCCcc
Q psy7790 111 LMGVAELAKGIQ 122 (367)
Q Consensus 111 ~~~~a~TgsGKT 122 (367)
+++.+|||||||
T Consensus 128 ILVTGpTGSGKS 139 (353)
T COG2805 128 ILVTGPTGSGKS 139 (353)
T ss_pred EEEeCCCCCcHH
Confidence 578999999999
No 384
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=50.88 E-value=32 Score=26.57 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=30.8
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 3456999999988888999999999984 777888875
No 385
>PLN02160 thiosulfate sulfurtransferase
Probab=50.83 E-value=20 Score=28.69 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=31.4
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
...++++||.+-..+...+..|...|+ ++..+.||+.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 345799999999999999999999998 4778889864
No 386
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=50.78 E-value=44 Score=35.09 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=39.1
Q ss_pred CCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecC-----CCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 282 PPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGG-----KDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~-----~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
..++|.|+++..|.+.++.+ ...|+.+.+++++ +...+|..+ ..++|+++|+
T Consensus 112 ~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp 172 (762)
T TIGR03714 112 KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTN 172 (762)
T ss_pred CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECc
Confidence 35899999998888777777 5569999887765 555555433 2489999998
No 387
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=50.70 E-value=79 Score=21.67 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=36.5
Q ss_pred eEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEE
Q psy7790 284 VLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMV 336 (367)
Q Consensus 284 ~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLV 336 (367)
+.||+ +++..|..+...|...|+.+..+.-..+...+....+..... .+.+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 45565 567889999999999999998888877766666555443322 344443
No 388
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=50.50 E-value=36 Score=23.00 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=36.9
Q ss_pred Eee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEe
Q psy7790 286 IFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337 (367)
Q Consensus 286 VF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa 337 (367)
+|. +....|..+...|...++.+..+.-.-....+....+.+..+.+.+|+-
T Consensus 4 lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 4 VYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 443 5577888888889888888877766555566666677776667776664
No 389
>PRK10329 glutaredoxin-like protein; Provisional
Probab=49.90 E-value=94 Score=22.27 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred CeEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 283 PVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 283 ~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
++.||+ +++-.|..+..+|...|+....+.-+.+++.+..... .-...+.+|+.-+..-.|.+...+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~~~l 69 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRPDMI 69 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCHHHH
Confidence 356776 6678899999999999999888877766655554432 222356677766654456654433
No 390
>PHA02653 RNA helicase NPH-II; Provisional
Probab=49.85 E-value=50 Score=34.31 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=47.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh-------CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL-------KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~-------~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
..+++|-+|+++.|..++..+.. .|..+...+|+++...+... ....++||+|..+. -.++.++++|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~-----~k~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTN-----PKPYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhcc-----cCCCCEEEEeCccc-ccccccCCEE
Confidence 34689999999998888877753 25567888999883221111 11458999995321 0156788889
Q ss_pred EEcCC
Q psy7790 354 INTEA 358 (367)
Q Consensus 354 I~yd~ 358 (367)
|..++
T Consensus 296 VIDEa 300 (675)
T PHA02653 296 IIDEV 300 (675)
T ss_pred Ecccc
Confidence 87654
No 391
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=49.59 E-value=5.8 Score=30.76 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=13.4
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
+..++..+++|+|||.
T Consensus 2 ~~~~~l~G~~G~GKTt 17 (148)
T smart00382 2 GEVILIVGPPGSGKTT 17 (148)
T ss_pred CCEEEEECCCCCcHHH
Confidence 4567889999999993
No 392
>PF13871 Helicase_C_4: Helicase_C-like
Probab=49.49 E-value=23 Score=32.25 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCcEEEecccccccCCcCC--------CCEEEEcCCCCCcc
Q psy7790 322 RSVESFRKGQKDVMVATDVASKGLDFEE--------IKHVINTEAKIKKR 363 (367)
Q Consensus 322 ~~~~~F~~g~~~vLVaTd~~~rGlDi~~--------v~~VI~yd~P~~~~ 363 (367)
...+.|.+|+..|+|.|++++-||-+.. -++-|..++|++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad 101 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSAD 101 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHH
Confidence 4567999999999999999999987753 23566788888865
No 393
>PRK05320 rhodanese superfamily protein; Provisional
Probab=49.11 E-value=21 Score=32.20 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCH
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQ 317 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 317 (367)
+.++++||.+-..++..+.+|+..|+. +..+.||+..
T Consensus 175 dk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 175 GKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 457999999999999999999999994 8899999854
No 394
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=49.05 E-value=11 Score=38.95 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=27.4
Q ss_pred ccccccccccCCcc--ccCcccccccCCccccCCCHHHHH
Q psy7790 109 KALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHD 146 (367)
Q Consensus 109 ~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~ 146 (367)
..+++.|+|||||| +..|-+-.|.....+.-+..|.+.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~ 184 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQ 184 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHH
Confidence 67899999999999 777876667555555555555444
No 395
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=48.91 E-value=1.5e+02 Score=24.73 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=47.1
Q ss_pred CCCeEEeeccHHH-HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCC---cCCCCEEEEc
Q psy7790 281 EPPVLIFAEKKQD-VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLD---FEEIKHVINT 356 (367)
Q Consensus 281 ~~~~iVF~~s~~~-~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD---i~~v~~VI~y 356 (367)
.++.++-+..-+. -..++.+|...|..+...+... .++...+ .+.+|+|++--...=++ +..-.+||+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--~~l~~~l-----~~aDiVIsat~~~~ii~~~~~~~~~viIDl 115 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--KNLKEHT-----KQADIVIVAVGKPGLVKGDMVKPGAVVIDV 115 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--hhHHHHH-----hhCCEEEEcCCCCceecHHHccCCeEEEEc
Confidence 4555555555665 4449999999998887777653 2232222 24676665543322233 3334699999
Q ss_pred CCCCCcc
Q psy7790 357 EAKIKKR 363 (367)
Q Consensus 357 d~P~~~~ 363 (367)
..|++++
T Consensus 116 a~prdvd 122 (168)
T cd01080 116 GINRVPD 122 (168)
T ss_pred cCCCccc
Confidence 9999764
No 396
>KOG0352|consensus
Probab=48.54 E-value=31 Score=33.36 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=50.3
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC--CcEEEecc
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ--KDVMVATD 339 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLVaTd 339 (367)
+=+|||.+-......-...|....++|..+++.|+..+|.+++-++..-+ +++|--|+
T Consensus 62 gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 62 GITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 46899999999888888999999999999999999999999999988754 45676665
No 397
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=48.50 E-value=12 Score=33.83 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=17.3
Q ss_pred HHHHHHHhHh-c-ccccccccccCCcc
Q psy7790 98 EEKILRSVAE-T-KALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i~~-g-~d~~~~a~TgsGKT 122 (367)
|.+.+..++. + .-++..++||||||
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKT 94 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKT 94 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHH
Confidence 4445554443 3 35789999999999
No 398
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.45 E-value=6.3 Score=38.74 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=16.7
Q ss_pred HHHHHHHhHhc-cc-ccccccccCCcc
Q psy7790 98 EEKILRSVAET-KA-LMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i~~g-~d-~~~~a~TgsGKT 122 (367)
+.+.+..++.. .- +++.+|||||||
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKT 272 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKT 272 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 44444454433 33 578899999999
No 399
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=48.16 E-value=1.1e+02 Score=28.71 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=53.5
Q ss_pred HHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCH----HHHHHHHHHHhcCCCcEEEe----cccccccC
Q psy7790 274 LECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ----EERTRSVESFRKGQKDVMVA----TDVASKGL 345 (367)
Q Consensus 274 ~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~----~~R~~~~~~F~~g~~~vLVa----Td~~~rGl 345 (367)
.+.+....++.+.++-+-+..+.++.+|...|+.-..+....-. .++....-.|. .+.+|+|+ |....--+
T Consensus 166 ~~~~~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~-~~~DvVIs~t~~Tas~~p~i 244 (338)
T PRK00676 166 LRRRQKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQ-DPYDVIFFGSSESAYAFPHL 244 (338)
T ss_pred HHHhCCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcc-cCCCEEEEcCCcCCCCCcee
Confidence 34343445678888889999999999999999765555444321 11110001232 46788885 43222111
Q ss_pred Cc---CCC--CEEEEcCCCCCccc
Q psy7790 346 DF---EEI--KHVINTEAKIKKRE 364 (367)
Q Consensus 346 Di---~~v--~~VI~yd~P~~~~~ 364 (367)
.. .+. +++|...+|+|++.
T Consensus 245 ~~~~~~~~~~r~~iDLAvPRdId~ 268 (338)
T PRK00676 245 SWESLADIPDRIVFDFNVPRTFPW 268 (338)
T ss_pred eHHHHhhccCcEEEEecCCCCCcc
Confidence 11 111 58999999999874
No 400
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=47.54 E-value=7.9 Score=32.74 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=15.0
Q ss_pred HHhHhcccccccccccCCccc
Q psy7790 103 RSVAETKALMGVAELAKGIQY 123 (367)
Q Consensus 103 ~~i~~g~d~~~~a~TgsGKT~ 123 (367)
.-+-.+++++..+++|+|||+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKTh 62 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTH 62 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHH
T ss_pred CCcccCeEEEEEhhHhHHHHH
Confidence 344578899999999999995
No 401
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=47.22 E-value=5.6 Score=31.48 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=16.3
Q ss_pred hHhcccccccccccCCcc-ccCccccc
Q psy7790 105 VAETKALMGVAELAKGIQ-YNDPIKTS 130 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT-~~~p~~~~ 130 (367)
+..|.=++-.++.|+||| |.--+...
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344555667899999999 54333333
No 402
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=47.15 E-value=1.3e+02 Score=27.35 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHHH-HHHHhcC--CCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEERTRS-VESFRKG--QKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~-~~~F~~g--~~~vLVaTd 339 (367)
.+.+.|...+..+|+...+.+..+.++..|... ++.|..+--+++..+.... ....+.. .++|||-.-
T Consensus 21 ~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 21 ELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 456667777788999999999999999999764 6899999999876554444 4444443 788888654
No 403
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=46.92 E-value=50 Score=27.10 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=37.4
Q ss_pred eEEeec--cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q psy7790 284 VLIFAE--KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS 342 (367)
Q Consensus 284 ~iVF~~--s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~ 342 (367)
-+|||| +.++.+.|.+...-.|--+.+=.|+..... ++...-..|-+.|||.||-..
T Consensus 18 ~~VYvNyG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~--Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 18 EVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLY--KLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred EEEEecCCCHHHHHHHHhCCCccceEEEEeccCcchHH--HHHHHHHCCCeEEEEecChhh
Confidence 489999 889988887643333433444456655433 344445678899999999644
No 404
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=46.84 E-value=1.4e+02 Score=27.02 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHhhcCCCeEEeecc---HHHHHHHHHHHHhCCCeEEEEec-CCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCC
Q psy7790 274 LECLQKTEPPVLIFAEK---KQDVDAIHEYLLLKGVEAVAIHG-GKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEE 349 (367)
Q Consensus 274 ~~~l~~~~~~~iVF~~s---~~~~~~l~~~L~~~~~~~~~lhg-~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~ 349 (367)
.+.+...+.+++.+-.. .++++++...|...+..+..+-+ .++... ++.++.....+++=+|...++. .
T Consensus 46 ~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~----~~~~k~~~~~l~~iDD~~~~~~---~ 118 (279)
T TIGR03590 46 IDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDADW----EKLIKEFGRKILVIDDLADRPH---D 118 (279)
T ss_pred HHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHH----HHHHHHhCCeEEEEecCCCCCc---C
Confidence 34555555555555332 23566677777766656666654 444432 2334444557788888877666 7
Q ss_pred CCEEEEcCCCCCcccc
Q psy7790 350 IKHVINTEAKIKKREH 365 (367)
Q Consensus 350 v~~VI~yd~P~~~~~Y 365 (367)
+++|||..+..+...|
T Consensus 119 ~D~vin~~~~~~~~~y 134 (279)
T TIGR03590 119 CDLLLDQNLGADASDY 134 (279)
T ss_pred CCEEEeCCCCcCHhHh
Confidence 8999999775544444
No 405
>KOG1137|consensus
Probab=46.29 E-value=1.3e+02 Score=30.27 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=29.0
Q ss_pred eEEEEecCCCHHHH--HHHHHHHhcCCCcEEEeccccc--ccCCcCCCC
Q psy7790 307 EAVAIHGGKDQEER--TRSVESFRKGQKDVMVATDVAS--KGLDFEEIK 351 (367)
Q Consensus 307 ~~~~lhg~~~~~~R--~~~~~~F~~g~~~vLVaTd~~~--rGlDi~~v~ 351 (367)
.....||.++.-.| ..++.+|++|++.|-|.|..=. -++++++..
T Consensus 415 ~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ek 463 (668)
T KOG1137|consen 415 HLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEK 463 (668)
T ss_pred eEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCcch
Confidence 45555777665444 4567899999999988887422 344444443
No 406
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=46.27 E-value=7.6 Score=31.18 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=21.5
Q ss_pred HhcccccccccccCCcc-ccCcccccccCCccccCCC
Q psy7790 106 AETKALMGVAELAKGIQ-YNDPIKTSWRAPRCILSLP 141 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT-~~~p~~~~~~~~~~i~~~~ 141 (367)
..|.-++..++.|+||| +.-.+...+.....+..++
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPT 56 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPT 56 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCC
Confidence 34556678899999999 5444444433333344444
No 407
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=45.81 E-value=1e+02 Score=32.98 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=40.9
Q ss_pred CCCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+..+.|-+.|..-|.+.++.+ ...|++|.++.++++..+|..+. .++|+++|+
T Consensus 123 g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~ 179 (908)
T PRK13107 123 GKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTN 179 (908)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCC
Confidence 345899999987776666655 55699999999999986654433 578999998
No 408
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=45.66 E-value=1.5e+02 Score=24.80 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=31.7
Q ss_pred CeEEeecc--------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 283 PVLIFAEK--------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 283 ~~iVF~~s--------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+++|+.|+ ...++.+.+.| |+++..+....+ .-..++++.|+..
T Consensus 79 ~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl~h~~kKP-~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 79 RVLIVSNSAGSSDDPDGERAEALEKAL---GIPVLRHRAKKP-GCFREILKYFKCQ 130 (168)
T ss_pred eEEEEECCCCcccCccHHHHHHHHHhh---CCcEEEeCCCCC-ccHHHHHHHHhhc
Confidence 59999998 56777777777 777655555555 6667888888754
No 409
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=45.18 E-value=16 Score=35.70 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=23.9
Q ss_pred HHHHHH-hHhcccccccccccCCccccCcccccccC
Q psy7790 99 EKILRS-VAETKALMGVAELAKGIQYNDPIKTSWRA 133 (367)
Q Consensus 99 ~~~i~~-i~~g~d~~~~a~TgsGKT~~~p~~~~~~~ 133 (367)
+.++.. +.-|++++..++-|||||+...-...+-|
T Consensus 188 KrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 188 KRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred HHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 444444 45679999999999999965444434444
No 410
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=45.01 E-value=14 Score=36.64 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=17.1
Q ss_pred HHHHHHHhHh-ccc-ccccccccCCcc
Q psy7790 98 EEKILRSVAE-TKA-LMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i~~-g~d-~~~~a~TgsGKT 122 (367)
|.+.+..++. .+- ++++++||||||
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKT 256 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKT 256 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 4445555443 333 679999999999
No 411
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=45.00 E-value=18 Score=31.43 Aligned_cols=33 Identities=6% Similarity=0.334 Sum_probs=24.1
Q ss_pred HHHHHHHhhccCCceEEeecCCCcHHHHHHHHH
Q psy7790 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARS 235 (367)
Q Consensus 203 ~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~ 235 (367)
..+..++.+++.....++||...=++++.++..
T Consensus 170 r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 666777777777677778887777777776654
No 412
>PRK01415 hypothetical protein; Validated
Probab=44.97 E-value=24 Score=31.56 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCH
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQ 317 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 317 (367)
+.++++||.+--.|+..+.+|+..|+. +..+.||+..
T Consensus 171 ~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 171 GKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 457999999999999999999999995 8889999753
No 413
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=44.90 E-value=45 Score=30.76 Aligned_cols=96 Identities=17% Similarity=0.270 Sum_probs=50.6
Q ss_pred hhHHHHH---HHHH-----hhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHH-------------H
Q psy7790 267 EAKIVYL---LECL-----QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSV-------------E 325 (367)
Q Consensus 267 ~~k~~~l---~~~l-----~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~-------------~ 325 (367)
..|+..| +..+ ...+..++|.+++.+..+-+-.+|...++...-+.|.+-..+....- .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 3555554 4444 33345699999999999999999999999999998876555443322 0
Q ss_pred HHhcC--CCcE-EEeccccccc----CCcCCCCEEEEcCCCCCc
Q psy7790 326 SFRKG--QKDV-MVATDVASKG----LDFEEIKHVINTEAKIKK 362 (367)
Q Consensus 326 ~F~~g--~~~v-LVaTd~~~rG----lDi~~v~~VI~yd~P~~~ 362 (367)
.-..+ ...| |+.|+-+... ++-.+++.||-||.=-++
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~ 218 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDT 218 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--T
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCC
Confidence 01112 2233 4555544432 334478899999975443
No 414
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=44.70 E-value=13 Score=38.25 Aligned_cols=57 Identities=4% Similarity=-0.053 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHhc-ccccccccccCCccccCc-ccccc---cCCccccCCCHHHHHHHHhc
Q psy7790 95 LKEEEKILRSVAET-KALMGVAELAKGIQYNDP-IKTSW---RAPRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g-~d~~~~a~TgsGKT~~~p-~~~~~---~~~~~i~~~~~~~~~~~~~~ 151 (367)
.+.|..++..++.. ...++.+|.|+|||++.- +...+ ...-++.++++.-++.+...
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~ 220 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLER 220 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHH
Confidence 34489999998876 567899999999994221 11111 22344567776655555543
No 415
>PRK10436 hypothetical protein; Provisional
Probab=44.09 E-value=15 Score=36.16 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=17.1
Q ss_pred HHHHHHHhH--hcccccccccccCCcc
Q psy7790 98 EEKILRSVA--ETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i~--~g~d~~~~a~TgsGKT 122 (367)
|.+.+..++ .+.-++++++||||||
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKT 232 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKT 232 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChH
Confidence 344444443 3345789999999999
No 416
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=43.95 E-value=9 Score=35.55 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=16.1
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+..|+.++.+++||||||
T Consensus 141 v~~~~~ili~G~tGsGKT 158 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKT 158 (308)
T ss_pred hhCCCEEEEECCCCCCHH
Confidence 447889999999999999
No 417
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=43.93 E-value=29 Score=26.18 Aligned_cols=36 Identities=25% Similarity=0.579 Sum_probs=29.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|+|.+-..+...+..|+..|+. +..+.||+.
T Consensus 58 ~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 58 DTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 456899998888888888899999985 778899864
No 418
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=43.47 E-value=12 Score=35.53 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=14.4
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.+.-++++++||||||
T Consensus 133 ~~glilI~GpTGSGKT 148 (358)
T TIGR02524 133 QEGIVFITGATGSGKS 148 (358)
T ss_pred cCCEEEEECCCCCCHH
Confidence 5677899999999999
No 419
>KOG0349|consensus
Probab=43.21 E-value=14 Score=35.64 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=33.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~ 202 (367)
..|+++|.-+.|-.+..++.+..||.+|..+||.++.
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilg 38 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILG 38 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEec
Confidence 4688889888898888999999999999999999988
No 420
>KOG1132|consensus
Probab=43.21 E-value=4.1e+02 Score=28.49 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=49.4
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHhc--------CCCcEEEecccccccC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK-------GVEAVAIHGGKDQEERTRSVESFRK--------GQKDVMVATDVASKGL 345 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~--------g~~~vLVaTd~~~rGl 345 (367)
+...|||.+++..-+.+....... +.+-..+ +=-+..+=..++.+|-+ |-.-.-||---.+.||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 445999999998777775555332 1111111 11122222334444433 3334568888889999
Q ss_pred CcC--CCCEEEEcCCCCCc
Q psy7790 346 DFE--EIKHVINTEAKIKK 362 (367)
Q Consensus 346 Di~--~v~~VI~yd~P~~~ 362 (367)
||. +-+.||-.++|.-+
T Consensus 640 DFsD~~~RaVI~tGlPyP~ 658 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPP 658 (945)
T ss_pred CccccCCceeEEecCCCCC
Confidence 996 56799999999743
No 421
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=42.95 E-value=2.5e+02 Score=25.28 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=68.5
Q ss_pred EEeecCCCc-HHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCe-EEeecc-----
Q psy7790 218 TLLFSATMP-KKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPV-LIFAEK----- 290 (367)
Q Consensus 218 ~il~SAT~~-~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~-iVF~~s----- 290 (367)
+|++|.+.. +.+..+.+. .-|+ |.++.... ....+ .++.++...-.....+.|.+.+.+= |.|...
T Consensus 60 iI~~s~~~~~~~l~~~~~~--~iPv-V~~~~~~~--~~~~~--~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~ 132 (279)
T PF00532_consen 60 IILASSENDDEELRRLIKS--GIPV-VLIDRYID--NPEGV--PSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSS 132 (279)
T ss_dssp EEEESSSCTCHHHHHHHHT--TSEE-EEESS-SC--TTCTS--CEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTH
T ss_pred EEEecccCChHHHHHHHHc--CCCE-EEEEeccC--CcccC--CEEEEcchHHHHHHHHHHHhcccCCeEEEEecCcchH
Confidence 444566655 556555544 3344 44444322 11122 2344555444455666666655443 444432
Q ss_pred --HHHHHHHHHHHHhCCC---eEEEEecCCCHHHHHHHHHHHhcCC--CcEEEecc-c---------cccc-CCcCC
Q psy7790 291 --KQDVDAIHEYLLLKGV---EAVAIHGGKDQEERTRSVESFRKGQ--KDVMVATD-V---------ASKG-LDFEE 349 (367)
Q Consensus 291 --~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLVaTd-~---------~~rG-lDi~~ 349 (367)
+....-..+.|...|+ ....+++..+.+.-.+..+++.... ++.++|++ . -.+| +.+|+
T Consensus 133 ~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~ 209 (279)
T PF00532_consen 133 TSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERGRLKIPE 209 (279)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT-TCTTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcCCcccCh
Confidence 2333445667788888 4466788888777777766665543 45888876 2 2367 88774
No 422
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=42.93 E-value=1.5e+02 Score=24.21 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=36.4
Q ss_pred CeEEeecc-------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHH
Q psy7790 283 PVLIFAEK-------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESF 327 (367)
Q Consensus 283 ~~iVF~~s-------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 327 (367)
+++||+.| ...|..+..+|...++.+..+.=.|+...|.++.+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 35677765 8999999999999999988888888888787766554
No 423
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=42.81 E-value=62 Score=25.95 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=26.5
Q ss_pred CCeEEeecc---HHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 282 PPVLIFAEK---KQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~~s---~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
.++||||.+ -..+-+++-.|+..|+. +..|.|+++
T Consensus 96 ~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 96 KHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 469999986 45566777788888875 778888864
No 424
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=42.66 E-value=1.9e+02 Score=25.33 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=44.4
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHhc--CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFRK--GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~~--g~~~vLVaTd 339 (367)
.+.+.+.+.+.+++++..+.+....+...+...+..+..++.+++..+. ...++.... |++++||.+.
T Consensus 26 ~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 96 (256)
T PRK06124 26 EIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRLDILVNNV 96 (256)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3444555556677888777777777777777777778888888875543 233333322 6778888764
No 425
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=42.64 E-value=8.6 Score=33.05 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=10.6
Q ss_pred ccccccccCCcc
Q psy7790 111 LMGVAELAKGIQ 122 (367)
Q Consensus 111 ~~~~a~TgsGKT 122 (367)
++.+++||||||
T Consensus 4 ilI~GptGSGKT 15 (198)
T cd01131 4 VLVTGPTGSGKS 15 (198)
T ss_pred EEEECCCCCCHH
Confidence 467899999999
No 426
>KOG0745|consensus
Probab=42.62 E-value=8.7 Score=37.11 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=16.9
Q ss_pred hHhcccccccccccCCcccc
Q psy7790 105 VAETKALMGVAELAKGIQYN 124 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT~~ 124 (367)
.++.-+++..+|||||||+.
T Consensus 223 ~LeKSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 223 ELEKSNVLLLGPTGSGKTLL 242 (564)
T ss_pred eeecccEEEECCCCCchhHH
Confidence 36778899999999999953
No 427
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=42.34 E-value=1.3e+02 Score=25.11 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=35.6
Q ss_pred CCCeEEeecc---HHHHHHHHHHHHhCCCeEEEEec---CCCHHHHHHHHHHHhcCCCcEE
Q psy7790 281 EPPVLIFAEK---KQDVDAIHEYLLLKGVEAVAIHG---GKDQEERTRSVESFRKGQKDVM 335 (367)
Q Consensus 281 ~~~~iVF~~s---~~~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vL 335 (367)
.++++|||-+ --+.-.++++|...|+.+..+.- .-...+-...++.|++-...++
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 4569999944 45778899999999998887432 2333445566677776555444
No 428
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=42.29 E-value=1.3e+02 Score=22.24 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=40.3
Q ss_pred CeEEeeccH----HH-HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccC-CcCCC
Q psy7790 283 PVLIFAEKK----QD-VDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGL-DFEEI 350 (367)
Q Consensus 283 ~~iVF~~s~----~~-~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGl-Di~~v 350 (367)
++|+-|.+- .. +..+.+.|..+|+.+-..|..++.- .... ...+++|+|.-+...+ |+|-+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~------~~~~-~~~D~iv~t~~~~~~~~~ip~~ 70 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI------ETYM-DGVHLICTTARVDRSFGDIPLV 70 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH------hhhc-CCCCEEEECCccccccCCCCEE
Confidence 478888653 22 5777788889999998888665432 1111 4579999997666555 35533
No 429
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=42.27 E-value=42 Score=31.71 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=20.2
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCeEEEEecCC
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 315 (367)
-++|.......-.+....+..++.+..+||++
T Consensus 270 ~~~~~g~~~~~~~~~~~~~~~~~~~~il~~~~ 301 (343)
T TIGR02314 270 RLEFTGQTVDAPLLSQTARRFNVDNSILSSQM 301 (343)
T ss_pred EEEEcCCCCCchHHHHHHHHhCCcEEEEEeee
Confidence 34666555555555555566678777777774
No 430
>KOG0949|consensus
Probab=41.92 E-value=16 Score=38.96 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHhcccccccccccCCccccCc
Q psy7790 95 LKEEEKILRSVAETKALMGVAELAKGIQYNDP 126 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p 126 (367)
-+-|.+.+..+-.++.++.+|||.+||||..+
T Consensus 513 d~WQ~elLDsvDr~eSavIVAPTSaGKTfisf 544 (1330)
T KOG0949|consen 513 DEWQRELLDSVDRNESAVIVAPTSAGKTFISF 544 (1330)
T ss_pred cHHHHHHhhhhhcccceEEEeeccCCceeccH
Confidence 34589999999999999999999999997544
No 431
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=41.76 E-value=1.8e+02 Score=27.84 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCCeEEeeccH----HHHHHHHHHHHhCCCeEEEEecCC---CHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 270 IVYLLECLQKTEPPVLIFAEKK----QDVDAIHEYLLLKGVEAVAIHGGK---DQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF~~s~----~~~~~l~~~L~~~~~~~~~lhg~~---~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+..|-..+...+.+++|.+... ...+.+...|...|+.+..|-+.. +..+-.+..+.++..+.+++|+--
T Consensus 11 l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiG 87 (386)
T cd08191 11 RRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLG 87 (386)
T ss_pred HHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445555555555677777542 345667778888888877665443 344455566777778888888654
No 432
>PRK06526 transposase; Provisional
Probab=41.62 E-value=10 Score=34.09 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=18.1
Q ss_pred HHhHhcccccccccccCCcccc
Q psy7790 103 RSVAETKALMGVAELAKGIQYN 124 (367)
Q Consensus 103 ~~i~~g~d~~~~a~TgsGKT~~ 124 (367)
.-+..+.+++..+++|+|||+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred chhhcCceEEEEeCCCCchHHH
Confidence 4455778999999999999953
No 433
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.57 E-value=16 Score=30.81 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=77.3
Q ss_pred HhcccccccccccCCccccCcccccccCCc---------cccCCCHHHHHHHHhc-cCeEEecCCCCccccccccCCCCH
Q psy7790 106 AETKALMGVAELAKGIQYNDPIKTSWRAPR---------CILSLPDQVHDIIRRN-LRILVEGDDVPPACCSFRLMKLPE 175 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT~~~p~~~~~~~~~---------~i~~~~~~~~~~~~~~-~~i~~~g~~~~~~~~~f~~l~~p~ 175 (367)
..|..+-.+++.||||+-.+-++..+..+. .+..+..+....+|.. .++....-..-+.+..++++.+|-
T Consensus 34 ~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPl 113 (228)
T COG4181 34 KRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL 113 (228)
T ss_pred cCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchh
Confidence 456677789999999995555555543322 1345556666666643 333333333345555666666665
Q ss_pred HHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHH---HHHHHHHhcCCCEEEEeCCCCccC
Q psy7790 176 SLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKK---IQNFARSALVKPITINVGRAGKIM 252 (367)
Q Consensus 176 ~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~---v~~l~~~~l~~~~~i~~~~~~~~~ 252 (367)
.|.-. ....+ + ..-+..+....-....--.-++++.- --.+++.+...|.++..+.+..
T Consensus 114 eL~ge------~~~~~---------~-~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTG-- 175 (228)
T COG4181 114 ELRGE------SSADS---------R-AGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTG-- 175 (228)
T ss_pred hhcCC------ccccH---------H-HHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCC--
Confidence 44220 00000 0 11122222222111111222233221 2245666777777665554322
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeec
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAE 289 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~ 289 (367)
|+.+ ....++..|+-.++...+-++|.+.
T Consensus 176 ---NLD~-----~Tg~~iaDLlF~lnre~G~TlVlVT 204 (228)
T COG4181 176 ---NLDR-----ATGDKIADLLFALNRERGTTLVLVT 204 (228)
T ss_pred ---Ccch-----hHHHHHHHHHHHHhhhcCceEEEEe
Confidence 3221 2345666666666666667777663
No 434
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=41.10 E-value=9.5 Score=35.23 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=11.5
Q ss_pred cccccccccCCcc
Q psy7790 110 ALMGVAELAKGIQ 122 (367)
Q Consensus 110 d~~~~a~TgsGKT 122 (367)
=++.++|||||||
T Consensus 6 ii~I~GpTasGKS 18 (300)
T PRK14729 6 IVFIFGPTAVGKS 18 (300)
T ss_pred EEEEECCCccCHH
Confidence 3678999999999
No 435
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=41.09 E-value=19 Score=37.16 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.2
Q ss_pred ccccccccccCCcc--ccCcccccccCCccccCCCHHHHH
Q psy7790 109 KALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHD 146 (367)
Q Consensus 109 ~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~ 146 (367)
..+++.|+||+||| +..|-+-.|..+-.+.-+..|.+.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~ 264 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAP 264 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHH
Confidence 57899999999999 677766667655555555555443
No 436
>PRK07478 short chain dehydrogenase; Provisional
Probab=40.77 E-value=1.9e+02 Score=25.30 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=41.9
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+.++++.+.+....+.+...+...+..+..+..++...+ -...++... .|.+++||..-
T Consensus 22 ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~a 91 (254)
T PRK07478 22 AAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLDIAFNNA 91 (254)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 44445555667777787777778887777766667777777776443 222333222 25677777654
No 437
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=40.36 E-value=15 Score=39.80 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhHhccc-ccccccccCCccccCc-ccccccC---CccccCCCHHHHHHHHh
Q psy7790 94 QLKEEEKILRSVAETKA-LMGVAELAKGIQYNDP-IKTSWRA---PRCILSLPDQVHDIIRR 150 (367)
Q Consensus 94 ~~~~Q~~~i~~i~~g~d-~~~~a~TgsGKT~~~p-~~~~~~~---~~~i~~~~~~~~~~~~~ 150 (367)
+.++|++++..++.+++ .++++..|+|||+..- +...|.. .-...+++..-+..+..
T Consensus 347 Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e 408 (988)
T PRK13889 347 LSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEG 408 (988)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhh
Confidence 34569999999999876 5788999999996433 2223322 12235666666666654
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=40.25 E-value=10 Score=25.97 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=13.1
Q ss_pred cccccccccccCCcc
Q psy7790 108 TKALMGVAELAKGIQ 122 (367)
Q Consensus 108 g~d~~~~a~TgsGKT 122 (367)
|...+..+++|+|||
T Consensus 23 g~~tli~G~nGsGKS 37 (62)
T PF13555_consen 23 GDVTLITGPNGSGKS 37 (62)
T ss_pred CcEEEEECCCCCCHH
Confidence 456888999999999
No 439
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=40.24 E-value=1.6e+02 Score=28.17 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcC-CCeEEeecc----HHHHHHHHHHHHhCCCeEEEEec---CCCHHHHHHHHHHHhcCCCcEEEec
Q psy7790 270 IVYLLECLQKTE-PPVLIFAEK----KQDVDAIHEYLLLKGVEAVAIHG---GKDQEERTRSVESFRKGQKDVMVAT 338 (367)
Q Consensus 270 ~~~l~~~l~~~~-~~~iVF~~s----~~~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLVaT 338 (367)
+..|-..+...+ .+++|.+.. ...++++...|...|+.+..|.+ .-+.+.-.+..+.++..+.+++|+-
T Consensus 19 ~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iiai 95 (383)
T PRK09860 19 LTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL 95 (383)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 344445555544 345555432 12355666777666766555544 2344555566667777777777643
No 440
>PHA02244 ATPase-like protein
Probab=40.09 E-value=20 Score=34.19 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=20.8
Q ss_pred HHHHHHHhHhcccccccccccCCcc
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
-..+...+..+.+++..+++|+|||
T Consensus 109 ~~ri~r~l~~~~PVLL~GppGtGKT 133 (383)
T PHA02244 109 TADIAKIVNANIPVFLKGGAGSGKN 133 (383)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHH
Confidence 3455566778999999999999999
No 441
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=39.91 E-value=47 Score=29.84 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=47.4
Q ss_pred CCeEEeeccHHHHHHHHHHHHhC---CCeEEEEecC-CCHHHHHHHHHHHhcCCCcEEEecc-----cccc-cCCcCCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLK---GVEAVAIHGG-KDQEERTRSVESFRKGQKDVMVATD-----VASK-GLDFEEIK 351 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~-~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~r-GlDi~~v~ 351 (367)
+.+||.|.+--.|-.|...|+.. +..|+-+.+. +--++....+ +.+.+.|.|+|+ ++.. .|-+.++.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 45899999999999999999865 2444444433 3444444444 567899999999 2222 35666777
Q ss_pred EEEE
Q psy7790 352 HVIN 355 (367)
Q Consensus 352 ~VI~ 355 (367)
+||.
T Consensus 204 ~ivl 207 (252)
T PF14617_consen 204 RIVL 207 (252)
T ss_pred EEEE
Confidence 6664
No 442
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=39.48 E-value=9.8 Score=29.70 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=10.4
Q ss_pred cccccccccccCCcc
Q psy7790 108 TKALMGVAELAKGIQ 122 (367)
Q Consensus 108 g~d~~~~a~TgsGKT 122 (367)
++-+++.+++|+|||
T Consensus 4 ~~~~~i~G~~G~GKT 18 (131)
T PF13401_consen 4 QRILVISGPPGSGKT 18 (131)
T ss_dssp ---EEEEE-TTSSHH
T ss_pred CcccEEEcCCCCCHH
Confidence 456788999999999
No 443
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=39.31 E-value=1.6e+02 Score=23.56 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=44.2
Q ss_pred HHHHHhhcCCCeEEeec-c--HHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAE-K--KQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~-s--~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.+-..+...+|.+. + ......+...|...+.++..++.+++..+ -...++.+. .+.+++||+..
T Consensus 16 ~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 16 LARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp HHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred HHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44444444555555554 4 57788888889888899999998876544 344444444 47788888654
No 444
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=39.27 E-value=19 Score=36.51 Aligned_cols=25 Identities=4% Similarity=0.113 Sum_probs=17.0
Q ss_pred HHHHHHHhHh--cccccccccccCCcc
Q psy7790 98 EEKILRSVAE--TKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i~~--g~d~~~~a~TgsGKT 122 (367)
|.+.+..++. ..-++++++||||||
T Consensus 304 ~~~~l~~~~~~~~Glilv~G~tGSGKT 330 (564)
T TIGR02538 304 QKALFLEAIHKPQGMVLVTGPTGSGKT 330 (564)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHH
Confidence 4444544443 245679999999999
No 445
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=39.27 E-value=3.8e+02 Score=28.76 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHH-hCC----CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----ccccCCcCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLL-LKG----VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----ASKGLDFEEI 350 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~-~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~~rGlDi~~v 350 (367)
+++++|..+++..|..++..+. ..+ ..+....++-+ ..+.+.+|+|+|+- +....++.++
T Consensus 45 ~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~----------~~s~~t~I~v~T~G~Llr~l~~d~~L~~v 114 (819)
T TIGR01970 45 GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN----------KVSRRTRLEVVTEGILTRMIQDDPELDGV 114 (819)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc----------ccCCCCcEEEECCcHHHHHHhhCcccccC
Confidence 3579999999999999999884 333 33333222211 11334689999982 2235678899
Q ss_pred CEEEEcCCC
Q psy7790 351 KHVINTEAK 359 (367)
Q Consensus 351 ~~VI~yd~P 359 (367)
++||..++=
T Consensus 115 ~~VIiDEaH 123 (819)
T TIGR01970 115 GALIFDEFH 123 (819)
T ss_pred CEEEEeccc
Confidence 999987653
No 446
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=39.24 E-value=20 Score=36.80 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=28.3
Q ss_pred ccccccccccCCcc--ccCcccccccCCccccCCCHHHHHHH
Q psy7790 109 KALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDII 148 (367)
Q Consensus 109 ~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~~ 148 (367)
..+++.|+|||||| +..|-+-.|.-+-.+.-+..|.+...
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~T 253 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMV 253 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHH
Confidence 67899999999999 67776666655545555555555443
No 447
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=39.14 E-value=2.1e+02 Score=23.27 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC
Q psy7790 272 YLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE 348 (367)
Q Consensus 272 ~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~ 348 (367)
.+..++.+ .+.+++|-|.+...++.|-..|-...-....-|+... +.... .-.|+|++. +.-=+-+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~--------e~~~~-~qPIli~~~--~~~pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG--------EPPPA-GQPILIAWP--GGNPNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCC--------CCCCC-CCCEEEEcC--CCCCCCC
Confidence 55555554 5778999999999999999999666545555565422 11122 345888886 2233456
Q ss_pred CCCEEEEcCCCCCc
Q psy7790 349 EIKHVINTEAKIKK 362 (367)
Q Consensus 349 ~v~~VI~yd~P~~~ 362 (367)
.|+++||.--|...
T Consensus 86 ~~~~lInl~d~~~~ 99 (144)
T COG2927 86 RVDLLINLADEFPD 99 (144)
T ss_pred ceeEEEeccccCCC
Confidence 77788887655433
No 448
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=39.11 E-value=17 Score=30.15 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=10.2
Q ss_pred hcccccccccccCCccc
Q psy7790 107 ETKALMGVAELAKGIQY 123 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT~ 123 (367)
.++.++..++.|+|||.
T Consensus 23 ~~~~~ll~G~~G~GKT~ 39 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTS 39 (185)
T ss_dssp ----EEE-B-TTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45778999999999994
No 449
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=38.91 E-value=17 Score=37.11 Aligned_cols=56 Identities=2% Similarity=-0.065 Sum_probs=39.4
Q ss_pred HHHHHHHHHhHhcccccccccccCCccccCc-ccccc---c-----CCccccCCCHHHHHHHHhc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQYNDP-IKTSW---R-----APRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-~~~~~---~-----~~~~i~~~~~~~~~~~~~~ 151 (367)
+.|+.++..++..+-.+..++.|+|||++.- ++..+ . +.-.+.++|..-+..+.+.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 4588899999999999999999999995321 11111 1 1234678888777777764
No 450
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=38.84 E-value=1.8e+02 Score=23.35 Aligned_cols=77 Identities=13% Similarity=0.261 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHhhcCCCeEEeec------cHHHHHHHHHHHHhCCCeE---EEEecCCCHHHHHHH-HHHHhcCC-CcE
Q psy7790 266 QEAKIVYLLECLQKTEPPVLIFAE------KKQDVDAIHEYLLLKGVEA---VAIHGGKDQEERTRS-VESFRKGQ-KDV 334 (367)
Q Consensus 266 ~~~k~~~l~~~l~~~~~~~iVF~~------s~~~~~~l~~~L~~~~~~~---~~lhg~~~~~~R~~~-~~~F~~g~-~~v 334 (367)
...++..-.++.+....+.|||+. ...+++.+.++|...|++. ..-....+..+=... .+-+.... .+|
T Consensus 22 ~~~R~~~a~~L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i 101 (155)
T PF02698_consen 22 SRERLDEAARLYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQSI 101 (155)
T ss_dssp -HHHHHHHHHHHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS-E
T ss_pred HHHHHHHHHHHHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeE
Confidence 346777777777776667899997 6789999999999988752 222223333332233 33333322 478
Q ss_pred EEeccccc
Q psy7790 335 MVATDVAS 342 (367)
Q Consensus 335 LVaTd~~~ 342 (367)
+|.|+..+
T Consensus 102 ilVT~~~H 109 (155)
T PF02698_consen 102 ILVTSPYH 109 (155)
T ss_dssp EEE--CCC
T ss_pred EEECCHHH
Confidence 88888655
No 451
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.53 E-value=3.9e+02 Score=26.10 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=36.0
Q ss_pred HHHHHHHhhccCCceEEeecCCCcHH-HHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcC
Q psy7790 203 EDVRTIFSFFRGQRQTLLFSATMPKK-IQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTE 281 (367)
Q Consensus 203 ~~v~~Il~~l~~~~Q~il~SAT~~~~-v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~ 281 (367)
+++..+........-.+++|||.... +.+.+..|-.-+ . -.-.+-.+++..+...++.++...+
T Consensus 289 ~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~-------------~--~~~I~TKlDEt~~~G~~l~~~~~~~ 353 (420)
T PRK14721 289 EQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG-------------I--HGCIITKVDEAASLGIALDAVIRRK 353 (420)
T ss_pred HHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC-------------C--CEEEEEeeeCCCCccHHHHHHHHhC
Confidence 34444333223445667789997655 444444432110 0 0112334555666677777777665
Q ss_pred CCeEEeec
Q psy7790 282 PPVLIFAE 289 (367)
Q Consensus 282 ~~~iVF~~ 289 (367)
-++.-+++
T Consensus 354 lPi~yvt~ 361 (420)
T PRK14721 354 LVLHYVTN 361 (420)
T ss_pred CCEEEEEC
Confidence 55444443
No 452
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=38.08 E-value=33 Score=35.93 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHhcccccccccccCCccccC-ccccccc-----CCccccCCCHHHHHHHHhc
Q psy7790 95 LKEEEKILRSVAETKALMGVAELAKGIQYND-PIKTSWR-----APRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~-p~~~~~~-----~~~~i~~~~~~~~~~~~~~ 151 (367)
.+.|++++..+...+-++..++.|+|||+.. .+...|. .+-.+.+++..-+..+++.
T Consensus 325 ~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~ 387 (720)
T TIGR01448 325 SEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEV 387 (720)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHh
Confidence 3459999999998888999999999999432 2222222 1223567787777777664
No 453
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=38.07 E-value=2.4e+02 Score=23.60 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=57.9
Q ss_pred chHHHHHHHhhcc-CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh
Q psy7790 201 LSEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK 279 (367)
Q Consensus 201 l~~~v~~Il~~l~-~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 279 (367)
|-+++..|+..+. .+..+.+.|-|-.++...-+-..+.-+ ....... .....-.. ...-+..|...+-.+.++
T Consensus 46 lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~---~~~~~~~--~~~~~F~~-~eI~~gsK~~Hf~~i~~~ 119 (169)
T PF12689_consen 46 LYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID---DADGDGV--PLIEYFDY-LEIYPGSKTTHFRRIHRK 119 (169)
T ss_dssp --TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C---------------CCECE-EEESSS-HHHHHHHHHHH
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC---ccccccc--cchhhcch-hheecCchHHHHHHHHHh
Confidence 3377788887775 467778888887665433333333222 0111111 11122222 233345777777777766
Q ss_pred cCC--CeEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc
Q psy7790 280 TEP--PVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 280 ~~~--~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 329 (367)
.+- .-++|+ +....++.+.. .|+.+.....||+...=.+-++.|++
T Consensus 120 tgI~y~eMlFFDDe~~N~~~v~~----lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 120 TGIPYEEMLFFDDESRNIEVVSK----LGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp H---GGGEEEEES-HHHHHHHHT----TT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred cCCChhHEEEecCchhcceeeEe----cCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 543 345555 44444444432 59999999999999998888888864
No 454
>KOG1180|consensus
Probab=37.96 E-value=1e+02 Score=31.08 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc-c----ccCCcCCCCEEEEc
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA-S----KGLDFEEIKHVINT 356 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~-~----rGlDi~~v~~VI~y 356 (367)
.++.|||.|+..=-..+.-....++.++..+..+..+ .++..+...+...|+|..-+ . ---..+.|.+||++
T Consensus 116 ~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGee---al~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~ 192 (678)
T KOG1180|consen 116 TKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEE---ALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYF 192 (678)
T ss_pred CeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChh---hhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEe
Confidence 4599999999876666666677799999998887643 56667777777888776622 1 12457899999999
Q ss_pred CC
Q psy7790 357 EA 358 (367)
Q Consensus 357 d~ 358 (367)
|.
T Consensus 193 d~ 194 (678)
T KOG1180|consen 193 DP 194 (678)
T ss_pred cC
Confidence 84
No 455
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=37.91 E-value=25 Score=26.32 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=31.4
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCCeEE-EEecCCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGVEAV-AIHGGKD 316 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~ 316 (367)
...+++|+|.+-......+..|+..|+... .+.||+.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 356799999999999999999999998887 7778754
No 456
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=37.89 E-value=37 Score=26.52 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=27.3
Q ss_pred CCCeEEeec-cHHHHHHHHHHHHhC------------CC-eEEEEecCCC
Q psy7790 281 EPPVLIFAE-KKQDVDAIHEYLLLK------------GV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~-s~~~~~~l~~~L~~~------------~~-~~~~lhg~~~ 316 (367)
..++++||. +-..+...+..|+.. |+ ++..+.||+.
T Consensus 68 ~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 68 RRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 346899996 777777788888763 55 7888999864
No 457
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=37.89 E-value=1.4e+02 Score=28.20 Aligned_cols=69 Identities=23% Similarity=0.241 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCCeEEeeccHH----HHHHHHHHHHhCCCeEEEEe---cCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 270 IVYLLECLQKTEPPVLIFAEKKQ----DVDAIHEYLLLKGVEAVAIH---GGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF~~s~~----~~~~l~~~L~~~~~~~~~lh---g~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+..|-..+...+ +++|.|...- .++.+...|...++.+..+. +.-+...-.++.+.++..+.+++|+--
T Consensus 11 l~~l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiG 86 (366)
T PF00465_consen 11 LEELGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIG 86 (366)
T ss_dssp GGGHHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence 444555555554 6666665421 35677777777777776665 455666667777778877788777654
No 458
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=37.84 E-value=2.2e+02 Score=27.17 Aligned_cols=69 Identities=22% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcCCCeEEeeccH-----HHHHHHHHHHHhCCCeEEEEecC---CCHHHHHHHHHHHhcCCCcEEEec
Q psy7790 270 IVYLLECLQKTEPPVLIFAEKK-----QDVDAIHEYLLLKGVEAVAIHGG---KDQEERTRSVESFRKGQKDVMVAT 338 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF~~s~-----~~~~~l~~~L~~~~~~~~~lhg~---~~~~~R~~~~~~F~~g~~~vLVaT 338 (367)
+..|-+.+...+.+++|.+... ...+.+...|...|+.+..+.+- -+-+.-.++.+.++..+.+++|+-
T Consensus 14 l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iiav 90 (380)
T cd08185 14 LNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGL 90 (380)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3444445554445677777432 13466777777777766655432 244445566667777777777754
No 459
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.81 E-value=3e+02 Score=24.65 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=40.6
Q ss_pred hHhcccccccccccCCccccCccccccc-C--------CccccCCCHHHHHHHHhccCeEEecCCCCcccccccc
Q psy7790 105 VAETKALMGVAELAKGIQYNDPIKTSWR-A--------PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL 170 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT~~~p~~~~~~-~--------~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~ 170 (367)
|..|.=+..+++.|+|||-.+-.++.+. | ...+..+.......+|.+++.+.-+-++.+.+.-+++
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~N 101 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLEN 101 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHH
Confidence 3466777889999999992222222221 1 2235666777778888887776666565555554444
No 460
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=37.69 E-value=2.4e+02 Score=26.10 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc----c
Q psy7790 266 QEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV----A 341 (367)
Q Consensus 266 ~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~----~ 341 (367)
+.+++..|.+.|...+.++ |++.+.++.+.........+-.+..+.|.++-.+-..+++ ..+++|+.|. +
T Consensus 192 p~e~~~~li~~l~~~~~~i-vl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~-----~a~l~I~~DSGp~Hl 265 (334)
T TIGR02195 192 PHEHYAELAKRLIDQGYQV-VLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIA-----LAKAVVTNDSGLMHV 265 (334)
T ss_pred CHHHHHHHHHHHHHCCCEE-EEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHH-----hCCEEEeeCCHHHHH
Confidence 4567777888776654444 4444544433322222222323445778888776666664 5789999993 2
Q ss_pred cccCCcCCCCEEEEcCCCCCcccc
Q psy7790 342 SKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 342 ~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+..+++| .|..|+ |.++..|
T Consensus 266 AaA~~~P---~i~lfG-~t~p~~~ 285 (334)
T TIGR02195 266 AAALNRP---LVALYG-STSPDFT 285 (334)
T ss_pred HHHcCCC---EEEEEC-CCChhhc
Confidence 3345544 445566 5555544
No 461
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=37.65 E-value=1.4e+02 Score=20.77 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=30.4
Q ss_pred EEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHH
Q psy7790 285 LIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVE 325 (367)
Q Consensus 285 iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~ 325 (367)
.||. +++..|..+...|...|+....++-..+...+.+..+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~ 43 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQ 43 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHH
Confidence 3444 6678888999999999998888877777666665443
No 462
>KOG0952|consensus
Probab=37.27 E-value=1.3e+02 Score=32.67 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=48.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc----cccc-cCC----c
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD----VASK-GLD----F 347 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd----~~~r-GlD----i 347 (367)
+.+++--++++.-|.+++..+..+ |+.|.-+.|++.-..- ++. +.+|||+|+ ++.| +.+ +
T Consensus 164 ~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~t-ei~------~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 164 DFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKT-EIA------DTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred CceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHH-HHH------hcCEEEecccceeeeeeeeccchhhh
Confidence 446777789998888887777443 8999999999865433 344 589999998 4433 221 4
Q ss_pred CCCCEEEEcC
Q psy7790 348 EEIKHVINTE 357 (367)
Q Consensus 348 ~~v~~VI~yd 357 (367)
..|.+||..+
T Consensus 237 ~~V~LviIDE 246 (1230)
T KOG0952|consen 237 SLVRLVIIDE 246 (1230)
T ss_pred hheeeEEeee
Confidence 5667776543
No 463
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=36.88 E-value=26 Score=35.57 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=23.3
Q ss_pred HHHHHHhHhccc--ccccccccCCccccCccc
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYNDPIK 128 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~p~~ 128 (367)
+..++.++.|.+ +++.++||+||||+.+-.
T Consensus 79 ~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~ 110 (568)
T COG5059 79 KPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT 110 (568)
T ss_pred hhHHHHHHhcccceEEEEcccCCCceeEeecC
Confidence 446778888876 678999999999865543
No 464
>PRK05867 short chain dehydrogenase; Provisional
Probab=36.72 E-value=2.9e+02 Score=24.11 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=38.0
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+..+++...+.+..+.+...+...+-.+..+..+++..+ ....++.+. -|.+++||...
T Consensus 25 ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 25 VALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 44444455556666666666677777777665556666667665332 223333222 16677777653
No 465
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=36.20 E-value=32 Score=31.67 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=24.2
Q ss_pred HHHHHHHhhccCCc-eEEeecCCCcHHHHHHHH
Q psy7790 203 EDVRTIFSFFRGQR-QTLLFSATMPKKIQNFAR 234 (367)
Q Consensus 203 ~~v~~Il~~l~~~~-Q~il~SAT~~~~v~~l~~ 234 (367)
.++..+++.+.... .+|++|...+.++..++.
T Consensus 173 ~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 173 REIWELLRELAKEGGVTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC
Confidence 67777777777666 588998888888776644
No 466
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=36.18 E-value=46 Score=27.59 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=28.3
Q ss_pred cCCCeEEeeccHH-HHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 280 TEPPVLIFAEKKQ-DVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 280 ~~~~~iVF~~s~~-~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
.+.++|+||.+-. .+...+..|...|+. |..|.||+.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 3457999999753 566778888888985 778899864
No 467
>PRK07454 short chain dehydrogenase; Provisional
Probab=35.94 E-value=2.9e+02 Score=23.84 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHH-HHHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQE-ERTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~-~R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.+.+.+.+++++..+......+...+...+..+..+.++++.. .....++.+. .|.+++||...
T Consensus 21 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 91 (241)
T PRK07454 21 ATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNA 91 (241)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34455555566788888777777777777766666777788887643 3334444432 26788888764
No 468
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=35.84 E-value=24 Score=33.99 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.7
Q ss_pred ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc
Q psy7790 87 KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
+++++-....+|.++ ..-.|..++..++||+||+
T Consensus 82 G~~~~~~~~~eqik~--~ap~~~~vLi~GetGtGKe 115 (403)
T COG1221 82 GESPSLQELREQIKA--YAPSGLPVLIIGETGTGKE 115 (403)
T ss_pred ccCHHHHHHHHHHHh--hCCCCCcEEEecCCCccHH
Confidence 355555555556666 5568999999999999999
No 469
>PF12846 AAA_10: AAA-like domain
Probab=35.74 E-value=13 Score=33.72 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=12.9
Q ss_pred ccccccccccCCccc
Q psy7790 109 KALMGVAELAKGIQY 123 (367)
Q Consensus 109 ~d~~~~a~TgsGKT~ 123 (367)
.++++.++||+|||+
T Consensus 2 ~h~~i~G~tGsGKT~ 16 (304)
T PF12846_consen 2 PHTLILGKTGSGKTT 16 (304)
T ss_pred CeEEEECCCCCcHHH
Confidence 467889999999993
No 470
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.65 E-value=2.4e+02 Score=26.49 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=37.5
Q ss_pred CeEEee--ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 283 PVLIFA--EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 283 ~~iVF~--~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
..++|. ++.+.++++.+.++..++.+..==||=+.-+--+.+.... +.--|.|.|..
T Consensus 52 ~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-~~p~i~VPTT~ 110 (347)
T cd08172 52 FVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-GVPVITVPTLA 110 (347)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-CCCEEEecCcc
Confidence 355664 7888888888888888877766666656666666665433 43345666653
No 471
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=35.18 E-value=25 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=19.6
Q ss_pred HHHHHHHh-HhcccccccccccCCcc
Q psy7790 98 EEKILRSV-AETKALMGVAELAKGIQ 122 (367)
Q Consensus 98 Q~~~i~~i-~~g~d~~~~a~TgsGKT 122 (367)
+.+.+..+ ..+++++.+++||+|||
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKT 192 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKT 192 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHH
Confidence 45555554 46789999999999999
No 472
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=35.13 E-value=1.4e+02 Score=25.93 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH
Q psy7790 268 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319 (367)
Q Consensus 268 ~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 319 (367)
+....+...+...-.++-||++. +.+.+.+.+...++.+.-+||..+...
T Consensus 40 ~~a~~i~~~~~~~~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~ 89 (207)
T PRK13958 40 TQIKKLASAVPNHIDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDF 89 (207)
T ss_pred HHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 34445555554333469999875 566677777777999999999988664
No 473
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=35.03 E-value=27 Score=34.25 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.0
Q ss_pred HHHHHHHhHhcccccccccccCCcccc
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQYN 124 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT~~ 124 (367)
.+.++..+..+++++..++.|+|||+.
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~l 210 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFV 210 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 456777888999999999999999953
No 474
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=34.86 E-value=44 Score=30.42 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..++|+||++--.+-.++..|...|++ +..|.|++.
T Consensus 231 ~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 231 DRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 346999999999999999999988984 889999854
No 475
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=34.84 E-value=3.1e+02 Score=25.78 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeE--EEEecCCCHHHHHHHHHHHhcCCCcEEEe
Q psy7790 295 DAIHEYLLLKGVEA--VAIHGGKDQEERTRSVESFRKGQKDVMVA 337 (367)
Q Consensus 295 ~~l~~~L~~~~~~~--~~lhg~~~~~~R~~~~~~F~~g~~~vLVa 337 (367)
+.+...|...|+.+ ..+.+.-+.+.-.+..+.++..+.+++|+
T Consensus 39 ~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 83 (351)
T cd08170 39 AKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIG 83 (351)
T ss_pred HHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEE
Confidence 33444444444432 22334444444455555555544444444
No 476
>KOG1802|consensus
Probab=34.83 E-value=26 Score=35.79 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHHHHhHhcccccccccccCCcc
Q psy7790 91 KEKQLKEEEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 91 ~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
.+++..-|..+..++++..=.+.++|.|+|||
T Consensus 408 lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKT 439 (935)
T KOG1802|consen 408 LPKLNASQSNAVKHVLQRPLSLIQGPPGTGKT 439 (935)
T ss_pred chhhchHHHHHHHHHHcCCceeeecCCCCCce
Confidence 45666779999999999999999999999999
No 477
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=34.78 E-value=43 Score=25.84 Aligned_cols=65 Identities=15% Similarity=0.302 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEe--cCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 269 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIH--GGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 269 k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lh--g~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
.+..+.+.|...+.+ ||+ |.. .+++|...|++|..+. .+.+......+++.+++|+++++|.|..
T Consensus 14 ~~~~~a~~l~~~G~~--i~a-T~g----Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~ 80 (116)
T cd01423 14 ELLPTAQKLSKLGYK--LYA-TEG----TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPS 80 (116)
T ss_pred hHHHHHHHHHHCCCE--EEE-ccH----HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCC
Confidence 345555566555432 233 333 3455667788776652 2212112266888999999999999864
No 478
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=34.18 E-value=2.2e+02 Score=22.06 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=44.9
Q ss_pred hhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc------------CCCcEEEecccccccC
Q psy7790 278 QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK------------GQKDVMVATDVASKGL 345 (367)
Q Consensus 278 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~------------g~~~vLVaTd~~~rGl 345 (367)
.+.+.|++|-++-+...+.....+... .++..++.....+|.. +..-|||+..+.+=+.
T Consensus 27 ~~~~~P~iV~fdmk~tld~F~~q~~~~---------~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvspAVv~Ga~ 97 (112)
T TIGR02744 27 VRLNSPVTVAFDMKQTLDAFFDSASQK---------KLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSPAVVSGAV 97 (112)
T ss_pred hhcCCCeEEEEecHHHHHHHHHHHhhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhhcCCC
Confidence 344667888888888888887777543 4778888877777743 4555788888888778
Q ss_pred CcC
Q psy7790 346 DFE 348 (367)
Q Consensus 346 Di~ 348 (367)
||.
T Consensus 98 DIT 100 (112)
T TIGR02744 98 DIT 100 (112)
T ss_pred CCC
Confidence 875
No 479
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.92 E-value=14 Score=29.45 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=11.9
Q ss_pred cccccccccCCccc
Q psy7790 110 ALMGVAELAKGIQY 123 (367)
Q Consensus 110 d~~~~a~TgsGKT~ 123 (367)
+++..+++|+|||.
T Consensus 1 ~vlL~G~~G~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPGTGKTT 14 (139)
T ss_dssp EEEEEESSSSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 46889999999993
No 480
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=33.74 E-value=1.1e+02 Score=29.26 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=29.1
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
...++++||++-..+...+..|...|+ ++..+.||+
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 345699999997777888899999998 577888775
No 481
>PRK10646 ADP-binding protein; Provisional
Probab=33.48 E-value=16 Score=30.09 Aligned_cols=41 Identities=7% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHhHhccc-ccccccccCCcc-ccCcccccccCCccccCCC
Q psy7790 101 ILRSVAETKA-LMGVAELAKGIQ-YNDPIKTSWRAPRCILSLP 141 (367)
Q Consensus 101 ~i~~i~~g~d-~~~~a~TgsGKT-~~~p~~~~~~~~~~i~~~~ 141 (367)
.|-..+.+.| ++-.+..|+||| |+--+...+.....+.++|
T Consensus 20 ~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPT 62 (153)
T PRK10646 20 RVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPT 62 (153)
T ss_pred HHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 3444455555 457899999999 6544444443333344444
No 482
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=33.47 E-value=34 Score=25.53 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCeEEeeccHHHHHHHHHH-----HHhCCC-eEEEEecCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEY-----LLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~-----L~~~~~-~~~~lhg~~~ 316 (367)
..+|+||.+.......+.. |...|+ ++..|.||+.
T Consensus 68 ~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 68 KDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3588889555544444444 777788 8999999854
No 483
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.43 E-value=2.2e+02 Score=22.51 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCC-eEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccC----
Q psy7790 271 VYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGL---- 345 (367)
Q Consensus 271 ~~l~~~l~~~~~~-~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGl---- 345 (367)
..+...|...+.+ +.|+-.|.+.++.+++.+....+.+..+..- ...+ .+.+|+|.|.-+++-+
T Consensus 25 r~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~------~~~~-----~~~DivI~aT~~~~~~i~~~ 93 (135)
T PF01488_consen 25 RAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDL------EEAL-----QEADIVINATPSGMPIITEE 93 (135)
T ss_dssp HHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGH------CHHH-----HTESEEEE-SSTTSTSSTHH
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHH------HHHH-----hhCCeEEEecCCCCcccCHH
Confidence 3445555555655 7888888888999998884444445444321 1222 2467776665444222
Q ss_pred CcCCC----CEEEEcCCCCCcc
Q psy7790 346 DFEEI----KHVINTEAKIKKR 363 (367)
Q Consensus 346 Di~~v----~~VI~yd~P~~~~ 363 (367)
.+... .+|+....|++++
T Consensus 94 ~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 94 MLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp HHTTTCHHCSEEEES-SS-SB-
T ss_pred HHHHHHhhhhceeccccCCCCC
Confidence 23444 5899999998876
No 484
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=33.25 E-value=28 Score=36.09 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=13.6
Q ss_pred ccccccccccCCccccC
Q psy7790 109 KALMGVAELAKGIQYND 125 (367)
Q Consensus 109 ~d~~~~a~TgsGKT~~~ 125 (367)
+.-+.+.+||||||++.
T Consensus 264 ~~gli~~~TGsGKT~t~ 280 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTM 280 (667)
T ss_pred ceeEEEEecCCCccHHH
Confidence 45788999999999543
No 485
>KOG1133|consensus
Probab=33.10 E-value=37 Score=34.83 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=25.2
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCcc
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
-+|=.||...-+++...+.+|+=-|--+|||+|||
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKS 48 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKS 48 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCch
Confidence 34445655555666677778996677799999999
No 486
>PRK09183 transposase/IS protein; Provisional
Probab=33.01 E-value=16 Score=32.88 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=17.7
Q ss_pred HhHhcccccccccccCCcccc
Q psy7790 104 SVAETKALMGVAELAKGIQYN 124 (367)
Q Consensus 104 ~i~~g~d~~~~a~TgsGKT~~ 124 (367)
-+..|..++..+|+|+|||+.
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHH
Confidence 356788999999999999953
No 487
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=32.90 E-value=16 Score=34.99 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=13.4
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.+.-++++++||||||
T Consensus 148 ~~GlilI~G~TGSGKT 163 (372)
T TIGR02525 148 AAGLGLICGETGSGKS 163 (372)
T ss_pred cCCEEEEECCCCCCHH
Confidence 3456789999999999
No 488
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=32.85 E-value=59 Score=28.95 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=37.7
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhcCC----CcEEEecccccccCCcCCCCEEEEcCCC
Q psy7790 305 GVEAVAIHGGKDQEERTRSVESFRKGQ----KDVMVATDVASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 305 ~~~~~~lhg~~~~~~R~~~~~~F~~g~----~~vLVaTd~~~rGlDi~~v~~VI~yd~P 359 (367)
++.+..++++.+... -.|.++. ..|+|+=+.++||+-+++.......=-|
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s 163 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNS 163 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCC
Confidence 689999998765433 3455554 7899999999999999998776654433
No 489
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=32.66 E-value=3.1e+02 Score=26.13 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCeEEeecc--HH---HHHHHHHHHHhCCCeEEEEec---CCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 270 IVYLLECLQKTEPPVLIFAEK--KQ---DVDAIHEYLLLKGVEAVAIHG---GKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF~~s--~~---~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+..|-..+...+.+++|.+.. .. ..+.+.+.|...|+.+..+-+ .-+...-.++.+.++..+.+++|+=-
T Consensus 17 ~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG 94 (382)
T cd08187 17 ESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVG 94 (382)
T ss_pred HHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 334444455445667777753 22 246788888887877665543 23445556677778888888887543
No 490
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=32.51 E-value=74 Score=24.64 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=29.9
Q ss_pred HHHHHHh-CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 297 IHEYLLL-KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 297 l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
.+.+|+. .|+.|..+..+ +...+..+.+.+++|+++.+|.|..
T Consensus 36 Ta~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 36 TGLLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred HHHHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 3455666 78887766211 1123577999999999999999974
No 491
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=32.42 E-value=3.1e+02 Score=25.25 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc----c
Q psy7790 266 QEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV----A 341 (367)
Q Consensus 266 ~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~----~ 341 (367)
+.+++..|.+.|...+.++++++.+..+.+....... . .....+-|.++-.+-..++. .++++|+.|. +
T Consensus 195 p~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~-~-~~~~~l~g~~sL~elaali~-----~a~l~I~nDSGp~Hl 267 (322)
T PRK10964 195 PEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAE-G-FPYVEVLPKLSLEQVARVLA-----GAKAVVSVDTGLSHL 267 (322)
T ss_pred CHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHc-c-CCcceecCCCCHHHHHHHHH-----hCCEEEecCCcHHHH
Confidence 4567778888886655556555556555444333222 2 23344568888777666664 5889999994 2
Q ss_pred cccCCcCCCCEEEEcCCCCCccccC
Q psy7790 342 SKGLDFEEIKHVINTEAKIKKREHG 366 (367)
Q Consensus 342 ~rGlDi~~v~~VI~yd~P~~~~~Y~ 366 (367)
+..+. +..|..|+ |.++..||
T Consensus 268 A~A~g---~p~valfG-pt~p~~~~ 288 (322)
T PRK10964 268 TAALD---RPNITLYG-PTDPGLIG 288 (322)
T ss_pred HHHhC---CCEEEEEC-CCCccccc
Confidence 33444 44677777 66665554
No 492
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=32.36 E-value=46 Score=31.00 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCCH
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKDQ 317 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 317 (367)
..+++|||.+--.+...+.+|...|+ ++..+.||+..
T Consensus 171 dk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 171 DKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred cCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 35799999998999999999999999 48899999754
No 493
>PRK08181 transposase; Validated
Probab=32.36 E-value=18 Score=32.88 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=16.7
Q ss_pred hHhcccccccccccCCccc
Q psy7790 105 VAETKALMGVAELAKGIQY 123 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT~ 123 (367)
+-.+++++..+++|+|||+
T Consensus 103 ~~~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSH 121 (269)
T ss_pred HhcCceEEEEecCCCcHHH
Confidence 4478899999999999995
No 494
>PRK09492 treR trehalose repressor; Provisional
Probab=32.35 E-value=3.8e+02 Score=24.19 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=46.4
Q ss_pred EEechhhHHHHHHHHHhhcCCCeEEeec-c-------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCc
Q psy7790 262 EYVKQEAKIVYLLECLQKTEPPVLIFAE-K-------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333 (367)
Q Consensus 262 ~~~~~~~k~~~l~~~l~~~~~~~iVF~~-s-------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 333 (367)
+..+...-...+.+.|...+.+-|.|+. . .....-..+.|...|+.+...++..+...-...++.+......
T Consensus 155 V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (315)
T PRK09492 155 VCYDDEGAIKLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVAALGGLSMQSGYELVAKVLTPETT 234 (315)
T ss_pred EEECcHHHHHHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCceeecCCCCchHHHHHHHHHhhcCCC
Confidence 3445444445566666666766666653 1 2334445566677788766566666655555566666655667
Q ss_pred EEEecc
Q psy7790 334 VMVATD 339 (367)
Q Consensus 334 vLVaTd 339 (367)
.++|++
T Consensus 235 ai~~~~ 240 (315)
T PRK09492 235 ALVCAT 240 (315)
T ss_pred EEEEcC
Confidence 776654
No 495
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=32.31 E-value=1.2e+02 Score=29.23 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=45.5
Q ss_pred eEEe---eccHHHHHHHHHHHHhCC---CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc
Q psy7790 284 VLIF---AEKKQDVDAIHEYLLLKG---VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 284 ~iVF---~~s~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
+||+ +.|-......++.|+..| +.+.+.||-++ .-..++.+.|.+|.++-+|+||..
T Consensus 267 vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 267 VLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred EEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 5554 467788888889998876 56788899988 767777778888889999999975
No 496
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.98 E-value=2.7e+02 Score=22.41 Aligned_cols=82 Identities=18% Similarity=0.093 Sum_probs=53.7
Q ss_pred HHHHHHhhc-----CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCC
Q psy7790 272 YLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLD 346 (367)
Q Consensus 272 ~l~~~l~~~-----~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD 346 (367)
.++++|..+ +..+.|+=.|..-.+-++..|...|..+...|..... ..+.. .+.+|+|+.--...-++
T Consensus 14 a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~-----l~~~v--~~ADIVvsAtg~~~~i~ 86 (140)
T cd05212 14 AVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ-----LQSKV--HDADVVVVGSPKPEKVP 86 (140)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC-----HHHHH--hhCCEEEEecCCCCccC
Confidence 344445443 3458899999999999999999999999999976431 11122 24677665443334455
Q ss_pred cC---CCCEEEEcCCCC
Q psy7790 347 FE---EIKHVINTEAKI 360 (367)
Q Consensus 347 i~---~v~~VI~yd~P~ 360 (367)
-. .=.+||+++...
T Consensus 87 ~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEWIKPGATVINCSPTK 103 (140)
T ss_pred HHHcCCCCEEEEcCCCc
Confidence 33 335888888765
No 497
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=31.85 E-value=2.5e+02 Score=26.68 Aligned_cols=54 Identities=19% Similarity=0.079 Sum_probs=41.6
Q ss_pred HHHhhcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 275 ECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 275 ~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+...+.++.+.|=.+..+-|-+|+..|+.. ++.+..+||+-++..| ..++|||.
T Consensus 138 ~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr-----------~plvVaTt 193 (441)
T COG4098 138 EQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR-----------APLVVATT 193 (441)
T ss_pred HHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc-----------ccEEEEeh
Confidence 333456788999999999999999999654 6889999999775533 46777776
No 498
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.81 E-value=98 Score=32.17 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc----cccccCCcCCCCEEEEcCC
Q psy7790 294 VDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD----VASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 294 ~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd----~~~rGlDi~~v~~VI~yd~ 358 (367)
++++.+.|... +.++..+-+ ..+++.|. ++.+|||+|. .++ +++..|+..|.
T Consensus 440 ter~eeeL~~~FP~~~V~r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ilda 497 (665)
T PRK14873 440 ARRTAEELGRAFPGVPVVTSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDA 497 (665)
T ss_pred HHHHHHHHHHHCCCCCEEEECh-------HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcc
Confidence 45555555443 444544332 34788996 5999999998 555 46788877664
No 499
>KOG0060|consensus
Probab=31.78 E-value=17 Score=36.54 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=17.0
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+.+|.+++.++++|+|||
T Consensus 458 V~~g~~LLItG~sG~GKt 475 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKT 475 (659)
T ss_pred ecCCCeEEEECCCCCchh
Confidence 568999999999999999
No 500
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=31.71 E-value=1.6e+02 Score=21.20 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=36.4
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
.+|-|+.+.++..+.+..-. ..+.+.+|..-..+..+.+.+. ...|+++||-
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~--~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~ 54 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE--AEIIETNGSIINKETIELIKKA---YRGVIILTDP 54 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC--ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECC
Confidence 46778888888877766421 3777778876665566666555 5679999993
Done!