Query psy7790
Match_columns 367
No_of_seqs 436 out of 2827
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 18:55:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.7E-42 2.6E-46 331.3 23.9 294 65-365 53-384 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 7.2E-37 2.5E-41 294.4 20.5 294 65-365 12-360 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.5E-36 8.7E-41 290.1 19.0 293 66-365 35-360 (410)
4 3fht_A ATP-dependent RNA helic 100.0 2.1E-34 7.1E-39 276.5 22.9 291 66-362 23-347 (412)
5 3eiq_A Eukaryotic initiation f 100.0 8.4E-35 2.9E-39 279.6 18.7 293 66-365 38-364 (414)
6 3fmp_B ATP-dependent RNA helic 100.0 5.4E-36 1.8E-40 293.9 10.6 289 67-361 91-413 (479)
7 3sqw_A ATP-dependent RNA helic 100.0 1.1E-34 3.7E-39 291.0 15.4 294 68-365 17-375 (579)
8 1s2m_A Putative ATP-dependent 100.0 1.3E-33 4.6E-38 270.2 22.2 291 67-365 20-342 (400)
9 1xti_A Probable ATP-dependent 100.0 1.1E-33 3.7E-38 269.7 21.2 292 68-365 8-334 (391)
10 1hv8_A Putative ATP-dependent 100.0 3.1E-33 1E-37 264.0 21.1 288 67-365 5-322 (367)
11 3pey_A ATP-dependent RNA helic 100.0 8.4E-33 2.9E-37 263.5 24.1 291 68-365 5-333 (395)
12 3i5x_A ATP-dependent RNA helic 100.0 4.2E-34 1.4E-38 285.9 15.2 294 68-365 68-426 (563)
13 1fuu_A Yeast initiation factor 100.0 2E-33 6.8E-38 268.1 7.2 292 67-365 20-343 (394)
14 2v1x_A ATP-dependent DNA helic 100.0 5.4E-32 1.8E-36 270.6 16.1 284 69-365 22-351 (591)
15 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-31 4E-36 265.1 11.3 283 68-365 2-320 (523)
16 2z0m_A 337AA long hypothetical 100.0 2.8E-30 9.5E-35 241.0 17.1 273 76-365 2-300 (337)
17 3oiy_A Reverse gyrase helicase 100.0 2.3E-30 7.9E-35 249.2 9.5 257 87-365 19-338 (414)
18 3fho_A ATP-dependent RNA helic 100.0 3.4E-30 1.2E-34 254.2 7.3 289 70-365 121-447 (508)
19 4ddu_A Reverse gyrase; topoiso 100.0 2.5E-29 8.4E-34 266.4 6.3 252 87-360 76-388 (1104)
20 3l9o_A ATP-dependent RNA helic 99.9 5.9E-29 2E-33 263.5 7.4 284 70-364 164-563 (1108)
21 1tf5_A Preprotein translocase 99.9 1.8E-28 6.3E-33 247.0 8.3 272 86-365 80-522 (844)
22 4a2p_A RIG-I, retinoic acid in 99.9 4.8E-28 1.7E-32 241.1 11.0 98 268-365 372-487 (556)
23 2ykg_A Probable ATP-dependent 99.9 2.7E-28 9.2E-33 249.7 7.7 99 267-365 379-495 (696)
24 3tbk_A RIG-I helicase domain; 99.9 2.7E-27 9.3E-32 235.4 14.3 98 268-365 371-486 (555)
25 1gku_B Reverse gyrase, TOP-RG; 99.9 2.3E-28 8E-33 258.8 3.3 252 86-359 54-352 (1054)
26 2whx_A Serine protease/ntpase/ 99.9 2.3E-29 7.9E-34 252.4 -8.9 258 73-365 155-454 (618)
27 4a2q_A RIG-I, retinoic acid in 99.9 2.4E-26 8.2E-31 238.4 12.2 98 268-365 613-728 (797)
28 2fsf_A Preprotein translocase 99.9 1.9E-26 6.6E-31 231.8 9.3 103 261-365 418-560 (853)
29 2va8_A SSO2462, SKI2-type heli 99.9 5.8E-25 2E-29 225.6 20.4 282 67-365 7-383 (715)
30 4gl2_A Interferon-induced heli 99.9 7E-27 2.4E-31 239.3 5.6 85 281-365 400-498 (699)
31 2zj8_A DNA helicase, putative 99.9 7.7E-26 2.6E-30 232.2 13.0 281 69-365 2-362 (720)
32 4a2w_A RIG-I, retinoic acid in 99.9 1E-25 3.5E-30 236.5 14.1 98 268-365 613-728 (936)
33 2xau_A PRE-mRNA-splicing facto 99.9 8E-26 2.7E-30 232.1 11.8 280 64-358 68-396 (773)
34 2p6r_A Afuhel308 helicase; pro 99.9 1.5E-25 5E-30 229.5 12.8 281 69-365 2-363 (702)
35 2p6n_A ATP-dependent RNA helic 99.9 3.4E-25 1.2E-29 190.4 12.9 130 234-365 9-138 (191)
36 2xgj_A ATP-dependent RNA helic 99.9 6.1E-25 2.1E-29 231.0 15.5 267 88-365 85-474 (1010)
37 1nkt_A Preprotein translocase 99.9 1E-25 3.4E-30 226.9 8.5 255 86-350 108-527 (922)
38 2wv9_A Flavivirin protease NS2 99.9 1.6E-26 5.6E-31 233.3 -0.5 247 89-365 215-509 (673)
39 1yks_A Genome polyprotein [con 99.9 1.9E-26 6.4E-31 223.3 -1.4 231 104-365 4-275 (440)
40 4a4z_A Antiviral helicase SKI2 99.9 4.3E-24 1.5E-28 224.5 14.5 259 89-360 39-453 (997)
41 2jlq_A Serine protease subunit 99.9 4.7E-25 1.6E-29 214.3 6.7 246 89-365 4-287 (451)
42 1wp9_A ATP-dependent RNA helic 99.9 3.1E-23 1.1E-27 201.9 16.4 98 268-365 343-453 (494)
43 1t5i_A C_terminal domain of A 99.9 8.7E-23 3E-27 172.4 14.4 113 253-365 2-115 (172)
44 2z83_A Helicase/nucleoside tri 99.9 6.9E-26 2.3E-30 220.6 -5.6 234 102-365 15-289 (459)
45 2hjv_A ATP-dependent RNA helic 99.9 1.1E-22 3.9E-27 170.2 14.9 113 253-365 6-119 (163)
46 2eyq_A TRCF, transcription-rep 99.9 4E-23 1.4E-27 220.2 13.9 263 87-364 601-898 (1151)
47 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.6E-22 5.6E-27 172.7 12.0 113 253-365 16-130 (185)
48 1fuk_A Eukaryotic initiation f 99.9 6.4E-22 2.2E-26 166.0 15.4 111 255-365 2-114 (165)
49 2oca_A DAR protein, ATP-depend 99.9 9.5E-23 3.3E-27 201.2 10.3 268 89-365 113-432 (510)
50 2rb4_A ATP-dependent RNA helic 99.9 6.7E-22 2.3E-26 167.5 14.1 113 253-365 4-124 (175)
51 1gm5_A RECG; helicase, replica 99.9 1.1E-23 3.9E-28 215.2 3.1 258 86-360 365-668 (780)
52 2v6i_A RNA helicase; membrane, 99.9 1.9E-22 6.6E-27 194.7 11.1 231 107-365 1-267 (431)
53 3o8b_A HCV NS3 protease/helica 99.9 2.7E-23 9.1E-28 207.4 3.1 233 98-365 222-493 (666)
54 3eaq_A Heat resistant RNA depe 99.9 3.4E-21 1.2E-25 168.2 12.7 110 256-365 5-115 (212)
55 2fwr_A DNA repair protein RAD2 99.8 1.2E-22 4.2E-27 198.5 2.4 257 89-365 93-428 (472)
56 3i32_A Heat resistant RNA depe 99.8 6.7E-21 2.3E-25 174.4 13.6 110 256-365 2-112 (300)
57 3rc3_A ATP-dependent RNA helic 99.8 1.2E-21 3.9E-26 197.5 8.2 227 104-359 151-399 (677)
58 4f92_B U5 small nuclear ribonu 99.8 1.8E-20 6.3E-25 205.4 12.3 259 87-355 924-1263(1724)
59 2yjt_D ATP-dependent RNA helic 99.7 5.4E-22 1.8E-26 167.3 0.0 111 255-365 2-114 (170)
60 4f92_B U5 small nuclear ribonu 99.8 2.1E-20 7.1E-25 205.0 8.2 256 88-355 78-428 (1724)
61 3h1t_A Type I site-specific re 99.8 1.9E-19 6.5E-24 180.7 7.1 84 281-365 439-533 (590)
62 3fmo_B ATP-dependent RNA helic 99.8 2.2E-18 7.5E-23 158.3 10.9 178 66-247 90-299 (300)
63 2d7d_A Uvrabc system protein B 99.7 3.8E-17 1.3E-21 165.3 16.7 142 214-365 385-534 (661)
64 3dmq_A RNA polymerase-associat 99.7 1E-17 3.5E-22 176.3 12.2 101 265-365 486-590 (968)
65 3jux_A Protein translocase sub 99.7 4.9E-17 1.7E-21 161.0 14.9 143 216-365 410-564 (822)
66 1c4o_A DNA nucleotide excision 99.7 8.8E-17 3E-21 162.7 16.6 142 214-365 379-528 (664)
67 3ber_A Probable ATP-dependent 99.7 9.7E-18 3.3E-22 149.9 7.9 177 66-246 41-248 (249)
68 3fe2_A Probable ATP-dependent 99.7 1.8E-17 6.1E-22 147.5 8.7 179 65-248 26-240 (242)
69 2pl3_A Probable ATP-dependent 99.7 6.9E-17 2.4E-21 143.0 9.1 176 67-246 24-233 (236)
70 1z63_A Helicase of the SNF2/RA 99.7 5.7E-16 2E-20 152.2 16.4 97 269-365 326-428 (500)
71 3iuy_A Probable ATP-dependent 99.7 1E-16 3.4E-21 141.2 8.7 177 64-245 15-228 (228)
72 3bor_A Human initiation factor 99.7 8.4E-17 2.9E-21 142.7 8.0 177 65-246 27-235 (237)
73 1z5z_A Helicase of the SNF2/RA 99.7 4.6E-16 1.6E-20 140.5 11.5 101 265-365 93-199 (271)
74 1wrb_A DJVLGB; RNA helicase, D 99.7 3.4E-17 1.2E-21 146.6 3.8 188 66-260 21-252 (253)
75 1qde_A EIF4A, translation init 99.6 4.6E-16 1.6E-20 136.5 9.9 178 66-248 12-219 (224)
76 1q0u_A Bstdead; DEAD protein, 99.6 1.7E-16 5.7E-21 138.9 6.6 176 68-248 4-214 (219)
77 2oxc_A Probable ATP-dependent 99.6 2.4E-16 8.3E-21 139.0 7.4 178 64-246 20-229 (230)
78 2gxq_A Heat resistant RNA depe 99.6 4.8E-16 1.6E-20 134.5 8.8 173 69-246 2-206 (207)
79 1vec_A ATP-dependent RNA helic 99.6 7E-16 2.4E-20 133.5 8.4 171 68-243 3-205 (206)
80 3ly5_A ATP-dependent RNA helic 99.6 6.2E-16 2.1E-20 139.2 8.1 171 67-241 51-258 (262)
81 1t6n_A Probable ATP-dependent 99.6 1.3E-15 4.5E-20 133.2 5.9 173 68-245 14-220 (220)
82 3dkp_A Probable ATP-dependent 99.6 2.8E-15 9.6E-20 133.4 7.2 179 66-248 23-243 (245)
83 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 2.2E-15 7.6E-20 158.0 7.1 83 282-365 538-682 (1038)
84 1z3i_X Similar to RAD54-like; 99.4 1.7E-12 5.7E-17 131.2 10.5 98 268-365 399-503 (644)
85 3mwy_W Chromo domain-containin 99.2 1.2E-11 3.9E-16 128.2 9.5 99 267-365 555-659 (800)
86 2ipc_A Preprotein translocase 99.1 6.1E-10 2.1E-14 112.7 13.6 81 217-302 380-464 (997)
87 3fe2_A Probable ATP-dependent 99.1 6.8E-10 2.3E-14 98.2 12.1 172 140-357 3-184 (242)
88 2db3_A ATP-dependent RNA helic 98.8 2.4E-08 8.1E-13 96.1 11.4 156 152-357 42-211 (434)
89 3llm_A ATP-dependent RNA helic 98.7 1.1E-08 3.8E-13 90.0 6.6 138 97-241 65-232 (235)
90 3dkp_A Probable ATP-dependent 98.7 1E-07 3.4E-12 84.2 10.5 161 145-357 4-183 (245)
91 2i4i_A ATP-dependent RNA helic 98.7 6.3E-07 2.1E-11 85.2 16.4 167 154-357 3-183 (417)
92 3iuy_A Probable ATP-dependent 98.6 4.1E-07 1.4E-11 79.3 12.5 155 158-357 11-175 (228)
93 1t6n_A Probable ATP-dependent 98.6 9.3E-07 3.2E-11 76.5 13.5 144 162-357 10-166 (220)
94 2oxc_A Probable ATP-dependent 98.5 6.5E-07 2.2E-11 78.2 12.1 148 158-357 16-174 (230)
95 3bor_A Human initiation factor 98.5 6.5E-07 2.2E-11 78.6 11.4 149 159-357 23-181 (237)
96 1wrb_A DJVLGB; RNA helicase, D 98.5 4.9E-07 1.7E-11 80.1 10.4 160 152-357 7-182 (253)
97 3ber_A Probable ATP-dependent 98.4 3.8E-06 1.3E-10 74.3 14.0 142 163-357 40-194 (249)
98 2pl3_A Probable ATP-dependent 98.4 3.6E-06 1.2E-10 73.6 13.4 162 143-357 7-179 (236)
99 3fmo_B ATP-dependent RNA helic 98.4 1.5E-06 5.1E-11 79.2 10.4 153 153-357 76-243 (300)
100 1qde_A EIF4A, translation init 98.4 1.8E-06 6.1E-11 74.9 10.3 146 160-357 8-163 (224)
101 1vec_A ATP-dependent RNA helic 98.3 5.7E-06 1.9E-10 70.6 12.3 141 166-357 3-154 (206)
102 1q0u_A Bstdead; DEAD protein, 98.3 2E-06 6.9E-11 74.4 9.2 142 165-357 3-158 (219)
103 2vl7_A XPD; helicase, unknown 98.3 5.6E-07 1.9E-11 88.9 5.9 86 271-362 374-465 (540)
104 2gxq_A Heat resistant RNA depe 98.3 6E-06 2E-10 70.5 11.2 143 167-357 2-152 (207)
105 4a15_A XPD helicase, ATP-depen 98.2 4.6E-06 1.6E-10 83.6 11.0 139 214-362 374-529 (620)
106 1xti_A Probable ATP-dependent 98.1 2.9E-05 9.9E-10 72.8 13.7 140 166-357 8-160 (391)
107 3ly5_A ATP-dependent RNA helic 98.1 3E-05 1E-09 69.0 12.8 142 167-357 53-209 (262)
108 1oyw_A RECQ helicase, ATP-depe 98.1 1.3E-05 4.5E-10 78.7 10.4 139 166-357 2-147 (523)
109 2j0s_A ATP-dependent RNA helic 98.1 5.8E-05 2E-09 71.4 14.2 144 163-357 34-187 (410)
110 1fuu_A Yeast initiation factor 98.0 7.6E-05 2.6E-09 70.0 13.6 143 161-357 16-170 (394)
111 1s2m_A Putative ATP-dependent 98.0 7.8E-05 2.7E-09 70.2 13.4 142 163-357 18-171 (400)
112 3b6e_A Interferon-induced heli 98.0 1.3E-06 4.6E-11 75.0 0.9 93 88-184 32-150 (216)
113 1hv8_A Putative ATP-dependent 97.9 0.00016 5.6E-09 66.8 14.4 141 164-357 4-155 (367)
114 2v1x_A ATP-dependent DNA helic 97.9 3.4E-05 1.2E-09 76.8 9.9 137 168-357 23-173 (591)
115 3eiq_A Eukaryotic initiation f 97.9 0.00016 5.6E-09 68.2 13.6 147 159-357 33-191 (414)
116 3oiy_A Reverse gyrase helicase 97.8 0.0001 3.4E-09 70.0 10.7 132 176-358 9-148 (414)
117 1rif_A DAR protein, DNA helica 97.8 4.6E-06 1.6E-10 75.2 0.9 133 89-229 113-266 (282)
118 3crv_A XPD/RAD3 related DNA he 97.7 0.00024 8.2E-09 70.2 12.9 85 272-362 384-475 (551)
119 3fmp_B ATP-dependent RNA helic 97.6 0.00044 1.5E-08 66.9 12.4 142 164-357 90-243 (479)
120 3pey_A ATP-dependent RNA helic 97.6 0.00024 8.2E-09 66.4 10.1 139 164-357 3-153 (395)
121 2z0m_A 337AA long hypothetical 97.6 0.00053 1.8E-08 62.6 11.5 127 173-357 1-137 (337)
122 1gm5_A RECG; helicase, replica 97.6 0.00073 2.5E-08 69.2 13.4 78 281-358 417-499 (780)
123 3fht_A ATP-dependent RNA helic 97.5 0.00033 1.1E-08 66.0 9.2 141 163-357 22-176 (412)
124 4ddu_A Reverse gyrase; topoiso 97.4 0.00081 2.8E-08 71.6 12.5 123 184-358 75-205 (1104)
125 2fz4_A DNA repair protein RAD2 97.4 8.8E-05 3E-09 65.0 3.9 125 89-227 93-230 (237)
126 3sqw_A ATP-dependent RNA helic 97.2 0.0019 6.6E-08 64.0 11.9 135 173-357 28-183 (579)
127 3i5x_A ATP-dependent RNA helic 97.2 0.0017 6E-08 64.0 10.7 136 172-357 78-234 (563)
128 2zj8_A DNA helicase, putative 97.2 0.00081 2.8E-08 68.6 8.4 137 167-358 2-147 (720)
129 2va8_A SSO2462, SKI2-type heli 97.1 0.0012 4.1E-08 67.3 8.6 138 166-358 8-154 (715)
130 2eyq_A TRCF, transcription-rep 96.6 0.02 6.8E-07 61.4 13.7 77 281-357 652-733 (1151)
131 1gku_B Reverse gyrase, TOP-RG; 96.6 0.0084 2.9E-07 63.7 10.5 121 183-357 53-183 (1054)
132 2p6r_A Afuhel308 helicase; pro 96.5 0.0024 8.3E-08 64.8 6.0 135 167-358 2-147 (702)
133 3hgt_A HDA1 complex subunit 3; 96.5 0.0082 2.8E-07 54.5 8.7 94 265-363 106-207 (328)
134 2ykg_A Probable ATP-dependent 96.2 0.011 3.8E-07 59.7 8.7 127 179-358 4-145 (696)
135 4a2q_A RIG-I, retinoic acid in 96.2 0.022 7.4E-07 58.7 10.6 122 184-358 244-380 (797)
136 4a15_A XPD helicase, ATP-depen 95.9 0.0019 6.6E-08 64.6 1.4 58 92-149 6-68 (620)
137 3crv_A XPD/RAD3 related DNA he 95.8 0.0022 7.4E-08 63.3 1.1 51 99-150 13-65 (551)
138 3tbk_A RIG-I helicase domain; 95.8 0.026 8.9E-07 55.0 8.8 74 281-358 52-136 (555)
139 4a2p_A RIG-I, retinoic acid in 95.7 0.037 1.3E-06 54.0 9.8 74 281-358 55-139 (556)
140 1tf5_A Preprotein translocase 95.6 0.02 6.9E-07 58.4 7.2 115 183-356 79-210 (844)
141 2vl7_A XPD; helicase, unknown 95.1 0.0051 1.7E-07 60.5 1.1 61 89-150 7-69 (540)
142 3fho_A ATP-dependent RNA helic 95.1 0.017 5.7E-07 56.3 4.8 141 162-357 115-267 (508)
143 4a2w_A RIG-I, retinoic acid in 94.5 0.068 2.3E-06 56.0 7.6 126 184-358 244-380 (936)
144 2ipc_A Preprotein translocase 93.7 0.3 1E-05 50.2 10.2 97 184-339 76-176 (997)
145 3l9o_A ATP-dependent RNA helic 93.7 0.047 1.6E-06 58.2 4.5 131 167-358 163-299 (1108)
146 1nkt_A Preprotein translocase 93.4 0.32 1.1E-05 49.9 9.8 115 183-356 107-238 (922)
147 1wp9_A ATP-dependent RNA helic 92.8 0.49 1.7E-05 44.6 9.8 75 279-358 50-134 (494)
148 1w36_D RECD, exodeoxyribonucle 89.1 0.16 5.3E-06 50.6 2.3 127 96-224 152-298 (608)
149 3b6e_A Interferon-induced heli 87.4 0.64 2.2E-05 38.7 4.9 74 281-358 82-171 (216)
150 3dmn_A Putative DNA helicase; 85.3 3.8 0.00013 33.2 8.4 111 226-358 8-123 (174)
151 2fsf_A Preprotein translocase 84.4 1.8 6.2E-05 44.2 7.0 69 282-356 116-201 (853)
152 4gl2_A Interferon-induced heli 82.7 0.51 1.8E-05 47.4 2.3 73 282-358 57-145 (699)
153 3nwn_A Kinesin-like protein KI 82.0 0.4 1.4E-05 44.2 1.1 27 99-125 94-122 (359)
154 2fz4_A DNA repair protein RAD2 81.9 3.1 0.0001 35.6 6.7 69 276-357 128-200 (237)
155 2l82_A Designed protein OR32; 80.7 11 0.00037 27.7 8.1 45 285-329 6-50 (162)
156 3gk5_A Uncharacterized rhodane 80.3 1.2 4E-05 33.1 3.0 36 281-316 55-90 (108)
157 3dc4_A Kinesin-like protein NO 80.3 0.5 1.7E-05 43.2 1.1 27 99-125 84-112 (344)
158 1bg2_A Kinesin; motor protein, 80.2 0.52 1.8E-05 42.8 1.2 27 99-125 67-95 (325)
159 2oca_A DAR protein, ATP-depend 79.4 2.2 7.6E-05 40.9 5.5 71 280-357 156-233 (510)
160 2vvg_A Kinesin-2; motor protei 79.1 0.59 2E-05 42.9 1.2 27 99-125 79-107 (350)
161 2y65_A Kinesin, kinesin heavy 79.1 0.58 2E-05 43.2 1.2 27 99-125 74-102 (365)
162 3b6u_A Kinesin-like protein KI 79.0 0.58 2E-05 43.3 1.1 27 99-125 91-119 (372)
163 2zfi_A Kinesin-like protein KI 78.7 0.61 2.1E-05 43.1 1.2 27 99-125 79-107 (366)
164 2fwr_A DNA repair protein RAD2 78.6 2.6 8.9E-05 39.9 5.7 66 279-357 131-200 (472)
165 4a14_A Kinesin, kinesin-like p 78.5 0.63 2.1E-05 42.6 1.2 27 99-125 73-101 (344)
166 1v8k_A Kinesin-like protein KI 78.4 0.59 2E-05 43.8 1.0 27 99-125 144-172 (410)
167 2h58_A Kinesin-like protein KI 78.3 0.64 2.2E-05 42.3 1.2 27 99-125 70-98 (330)
168 1x88_A Kinesin-like protein KI 78.2 1 3.5E-05 41.5 2.5 27 99-125 78-106 (359)
169 3foj_A Uncharacterized protein 78.0 1.3 4.5E-05 32.1 2.7 36 281-316 56-91 (100)
170 3t0q_A AGR253WP; kinesin, alph 78.0 0.6 2E-05 42.9 0.9 26 100-125 76-103 (349)
171 1t5c_A CENP-E protein, centrom 77.9 0.65 2.2E-05 42.6 1.1 27 99-125 67-95 (349)
172 3gbj_A KIF13B protein; kinesin 77.9 0.66 2.3E-05 42.6 1.1 27 99-125 82-110 (354)
173 1goj_A Kinesin, kinesin heavy 77.9 0.62 2.1E-05 42.8 1.0 27 99-125 70-98 (355)
174 2heh_A KIF2C protein; kinesin, 77.8 0.64 2.2E-05 43.2 1.1 27 99-125 124-152 (387)
175 2wbe_C Bipolar kinesin KRP-130 77.8 1.1 3.8E-05 41.4 2.6 28 98-125 89-118 (373)
176 2nr8_A Kinesin-like protein KI 77.8 0.67 2.3E-05 42.7 1.1 27 99-125 93-121 (358)
177 3lre_A Kinesin-like protein KI 77.7 0.63 2.2E-05 42.8 1.0 27 99-125 95-123 (355)
178 1wv9_A Rhodanese homolog TT165 77.6 1.5 5E-05 31.5 2.8 35 282-316 54-88 (94)
179 1f9v_A Kinesin-like protein KA 77.6 0.64 2.2E-05 42.6 1.0 26 100-125 75-102 (347)
180 1c4o_A DNA nucleotide excision 77.5 15 0.0005 36.7 11.0 84 261-344 33-143 (664)
181 2owm_A Nckin3-434, related to 77.3 1.2 4E-05 42.3 2.7 28 98-125 125-154 (443)
182 4etp_A Kinesin-like protein KA 77.3 0.71 2.4E-05 43.2 1.2 26 100-125 131-158 (403)
183 3cob_A Kinesin heavy chain-lik 76.4 0.65 2.2E-05 42.9 0.7 26 100-125 70-97 (369)
184 3eme_A Rhodanese-like domain p 76.4 1.3 4.4E-05 32.4 2.2 36 281-316 56-91 (103)
185 3u06_A Protein claret segregat 76.3 0.78 2.7E-05 43.1 1.2 26 100-125 129-156 (412)
186 1ry6_A Internal kinesin; kines 76.3 0.74 2.5E-05 42.4 1.0 26 100-125 74-102 (360)
187 2rep_A Kinesin-like protein KI 75.7 0.81 2.8E-05 42.4 1.1 26 100-125 106-133 (376)
188 3iwh_A Rhodanese-like domain p 75.3 1.4 4.9E-05 32.4 2.2 35 281-315 56-90 (103)
189 3o8b_A HCV NS3 protease/helica 75.3 5.2 0.00018 39.9 6.8 72 276-358 252-327 (666)
190 3bfn_A Kinesin-like protein KI 75.0 0.7 2.4E-05 43.0 0.5 27 99-125 88-116 (388)
191 3g5j_A Putative ATP/GTP bindin 74.9 3.1 0.00011 31.6 4.2 35 282-316 90-125 (134)
192 3hjh_A Transcription-repair-co 74.1 14 0.00048 35.3 9.4 85 258-342 16-113 (483)
193 4a4z_A Antiviral helicase SKI2 73.9 18 0.00061 38.0 10.8 68 280-358 81-156 (997)
194 3hix_A ALR3790 protein; rhodan 73.3 2.4 8.4E-05 31.1 3.1 36 281-316 52-88 (106)
195 3e4c_A Caspase-1; zymogen, inf 71.5 8.4 0.00029 34.4 6.7 45 284-329 63-118 (302)
196 2l82_A Designed protein OR32; 70.5 29 0.00099 25.4 8.3 56 284-339 82-137 (162)
197 2jtq_A Phage shock protein E; 69.7 9 0.00031 26.5 5.3 35 281-316 41-76 (85)
198 2d7d_A Uvrabc system protein B 69.4 25 0.00085 35.0 10.3 84 261-344 37-147 (661)
199 1rif_A DAR protein, DNA helica 69.2 4.3 0.00015 35.5 4.3 70 281-357 157-233 (282)
200 2xau_A PRE-mRNA-splicing facto 69.2 2.7 9.2E-05 42.9 3.2 142 163-358 69-217 (773)
201 4fn4_A Short chain dehydrogena 68.7 26 0.0009 30.2 9.1 65 273-339 23-92 (254)
202 3nhv_A BH2092 protein; alpha-b 68.4 3 0.0001 32.6 2.8 36 281-316 72-109 (144)
203 2fsx_A RV0390, COG0607: rhodan 68.4 4.2 0.00014 31.9 3.6 36 281-316 80-116 (148)
204 2k0z_A Uncharacterized protein 68.2 12 0.00041 27.4 6.0 37 280-316 55-91 (110)
205 2jlq_A Serine protease subunit 66.0 11 0.00039 35.4 6.8 68 280-358 47-119 (451)
206 3gr1_A Protein PRGH; type III 65.8 19 0.00063 30.6 7.2 65 281-364 26-93 (227)
207 3h11_B Caspase-8; cell death, 64.8 18 0.00061 31.6 7.3 40 290-330 47-86 (271)
208 3flh_A Uncharacterized protein 64.8 2.1 7.1E-05 32.6 1.1 35 282-316 72-108 (124)
209 1tq1_A AT5G66040, senescence-a 64.7 3.4 0.00012 31.5 2.3 36 281-316 82-118 (129)
210 1qxn_A SUD, sulfide dehydrogen 64.7 3.3 0.00011 32.1 2.3 36 281-316 82-118 (137)
211 2dko_A Caspase-3; low barrier 64.3 22 0.00074 27.9 7.0 41 290-331 39-79 (146)
212 4h1g_A Maltose binding protein 63.6 2.1 7.3E-05 43.3 1.2 26 100-125 453-480 (715)
213 1gmx_A GLPE protein; transfera 63.3 3.2 0.00011 30.5 1.9 36 281-316 58-94 (108)
214 3gr0_A Protein PRGH; type III 63.1 17 0.00058 30.1 6.3 65 281-364 26-93 (197)
215 3o94_A Nicotinamidase; hydrola 62.7 48 0.0017 27.6 9.4 70 272-341 133-207 (211)
216 2xgj_A ATP-dependent RNA helic 62.2 8 0.00027 40.7 5.3 68 280-358 128-201 (1010)
217 2h54_A Caspase-1; allosteric s 62.0 21 0.0007 29.1 6.7 45 284-329 46-101 (178)
218 2hhg_A Hypothetical protein RP 61.4 3.5 0.00012 31.8 1.9 36 281-316 86-122 (139)
219 4b3f_X DNA-binding protein smu 61.3 3.3 0.00011 41.3 2.0 57 94-150 190-251 (646)
220 3p45_A Caspase-6; protease, hu 60.9 29 0.00098 28.3 7.3 49 282-331 45-107 (179)
221 3ilm_A ALR3790 protein; rhodan 60.6 4.9 0.00017 31.2 2.6 36 281-316 56-92 (141)
222 3d1p_A Putative thiosulfate su 60.0 4.2 0.00014 31.4 2.1 35 282-316 92-127 (139)
223 2gk6_A Regulator of nonsense t 58.8 3.7 0.00013 40.7 2.0 56 96-151 183-243 (624)
224 3sir_A Caspase; hydrolase; 2.6 57.6 19 0.00064 31.2 6.1 54 291-346 43-99 (259)
225 1qtn_A Caspase-8; apoptosis, d 57.5 35 0.0012 27.2 7.3 40 290-330 53-92 (164)
226 3h11_A CAsp8 and FADD-like apo 57.3 8.4 0.00029 33.8 3.8 48 282-330 44-91 (272)
227 1m72_A Caspase-1; caspase, cys 56.7 31 0.0011 30.1 7.4 46 284-330 35-93 (272)
228 1pyo_A Caspase-2; apoptosis, c 56.6 29 0.00099 27.8 6.6 46 283-329 35-94 (167)
229 3ec2_A DNA replication protein 56.2 4.9 0.00017 32.3 2.0 17 107-123 37-53 (180)
230 1vee_A Proline-rich protein fa 55.3 5.8 0.0002 30.4 2.2 36 281-316 74-110 (134)
231 3upu_A ATP-dependent DNA helic 55.0 4.6 0.00016 38.3 1.8 54 98-151 30-93 (459)
232 3e1s_A Exodeoxyribonuclease V, 53.7 4.8 0.00016 39.5 1.7 57 95-151 191-251 (574)
233 2nn3_C Caspase-1; cysteine pro 52.9 38 0.0013 30.2 7.4 47 283-330 62-121 (310)
234 3co5_A Putative two-component 52.3 6.1 0.00021 30.6 1.9 19 105-123 24-42 (143)
235 3n70_A Transport activator; si 51.6 6.2 0.00021 30.6 1.8 19 105-123 21-39 (145)
236 2xzl_A ATP-dependent helicase 51.2 5.4 0.00018 40.9 1.7 56 95-150 362-422 (802)
237 1uaa_A REP helicase, protein ( 50.9 3.8 0.00013 40.9 0.5 54 96-151 5-66 (673)
238 3jux_A Protein translocase sub 50.8 5.8 0.0002 40.0 1.8 37 86-128 72-110 (822)
239 2ql9_A Caspase-7; cysteine pro 50.5 36 0.0012 27.5 6.2 41 290-331 67-107 (173)
240 3hcw_A Maltose operon transcri 50.4 1.2E+02 0.0041 25.9 13.6 97 261-357 110-228 (295)
241 1j5p_A Aspartate dehydrogenase 49.3 33 0.0011 29.6 6.2 65 281-346 60-126 (253)
242 2wjy_A Regulator of nonsense t 48.9 6.7 0.00023 40.2 2.0 57 95-151 358-419 (800)
243 2j32_A Caspase-3; Pro-caspase3 48.8 53 0.0018 28.1 7.5 54 290-345 39-95 (250)
244 3tg1_B Dual specificity protei 48.7 9.6 0.00033 30.1 2.5 35 281-315 93-136 (158)
245 4g81_D Putative hexonate dehyd 48.2 1.2E+02 0.0041 25.9 9.8 67 273-339 25-94 (255)
246 1u6t_A SH3 domain-binding glut 48.1 30 0.001 26.1 5.1 41 287-327 12-52 (121)
247 3gaf_A 7-alpha-hydroxysteroid 47.3 89 0.003 26.4 8.8 67 273-339 28-97 (256)
248 4ehd_A Caspase-3; caspase, apo 47.2 57 0.0019 28.5 7.5 40 290-330 67-106 (277)
249 3hjh_A Transcription-repair-co 47.0 10 0.00035 36.3 2.8 74 270-355 371-444 (483)
250 3sju_A Keto reductase; short-c 46.4 1.3E+02 0.0045 25.7 9.9 69 272-340 39-110 (279)
251 3qk7_A Transcriptional regulat 46.4 1.4E+02 0.0047 25.5 14.4 101 260-360 104-227 (294)
252 3od5_A Caspase-6; caspase doma 46.3 46 0.0016 29.1 6.8 47 283-330 23-83 (278)
253 2j6p_A SB(V)-AS(V) reductase; 46.3 19 0.00064 28.2 3.9 47 270-316 56-111 (152)
254 1urh_A 3-mercaptopyruvate sulf 45.9 14 0.00048 32.1 3.4 36 281-316 230-266 (280)
255 1urh_A 3-mercaptopyruvate sulf 45.4 12 0.00042 32.5 2.9 49 267-315 71-122 (280)
256 1e0c_A Rhodanese, sulfurtransf 44.1 18 0.00062 31.2 3.8 48 268-315 67-117 (271)
257 1nw9_B Caspase 9, apoptosis-re 43.1 98 0.0034 26.8 8.5 56 291-348 45-103 (277)
258 3ipz_A Monothiol glutaredoxin- 43.0 68 0.0023 23.2 6.4 46 281-326 17-68 (109)
259 2j48_A Two-component sensor ki 42.9 53 0.0018 22.9 5.8 69 268-340 12-84 (119)
260 3k9c_A Transcriptional regulat 42.6 1.6E+02 0.0053 25.0 16.5 100 260-359 104-224 (289)
261 3ucx_A Short chain dehydrogena 42.3 1.5E+02 0.0053 24.9 9.9 68 272-339 26-96 (264)
262 3zyw_A Glutaredoxin-3; metal b 42.1 74 0.0025 23.2 6.5 45 281-325 15-65 (111)
263 1uar_A Rhodanese; sulfurtransf 41.9 21 0.00071 31.1 3.9 35 281-315 79-115 (285)
264 1zem_A Xylitol dehydrogenase; 41.9 1.3E+02 0.0045 25.3 9.1 68 272-339 22-92 (262)
265 4f67_A UPF0176 protein LPG2838 41.9 13 0.00043 32.5 2.3 37 280-316 180-217 (265)
266 2fp3_A Caspase NC; apoptosis, 41.5 50 0.0017 29.4 6.4 70 283-354 63-148 (316)
267 3lfu_A DNA helicase II; SF1 he 41.4 7.5 0.00026 38.4 1.0 29 283-311 349-377 (647)
268 3cs3_A Sugar-binding transcrip 40.9 1.6E+02 0.0055 24.7 17.1 98 260-357 96-213 (277)
269 1uar_A Rhodanese; sulfurtransf 40.9 30 0.001 30.0 4.8 35 281-315 233-269 (285)
270 2yan_A Glutaredoxin-3; oxidore 40.5 95 0.0033 22.0 7.1 55 282-336 17-77 (105)
271 3imf_A Short chain dehydrogena 40.4 1.4E+02 0.0049 25.0 9.1 68 272-339 21-91 (257)
272 2oap_1 GSPE-2, type II secreti 40.4 7.3 0.00025 37.6 0.7 18 105-122 257-274 (511)
273 3gbc_A Pyrazinamidase/nicotina 39.9 1.4E+02 0.0049 23.9 8.7 62 272-333 115-181 (186)
274 3rot_A ABC sugar transporter, 39.3 1.8E+02 0.0061 24.7 12.4 96 261-357 107-225 (297)
275 1f1j_A Caspase-7 protease; cas 39.1 47 0.0016 29.4 5.8 40 290-330 92-131 (305)
276 3b85_A Phosphate starvation-in 39.0 14 0.00049 30.7 2.2 34 98-131 12-45 (208)
277 2gza_A Type IV secretion syste 38.9 8.2 0.00028 35.3 0.7 18 105-122 172-189 (361)
278 3hzu_A Thiosulfate sulfurtrans 38.8 27 0.00093 31.1 4.2 35 281-315 111-147 (318)
279 2lnd_A De novo designed protei 38.8 93 0.0032 21.3 9.2 63 265-328 35-99 (112)
280 3vfd_A Spastin; ATPase, microt 38.7 21 0.0007 32.8 3.5 15 108-122 148-162 (389)
281 1vlj_A NADH-dependent butanol 38.5 1.2E+02 0.0042 27.8 8.8 67 273-339 34-109 (407)
282 1wik_A Thioredoxin-like protei 38.3 1.1E+02 0.0037 21.9 7.3 55 281-335 14-74 (109)
283 3u4q_A ATP-dependent helicase/ 38.3 9.2 0.00031 41.2 1.1 25 96-122 13-37 (1232)
284 3r1i_A Short-chain type dehydr 38.1 1.3E+02 0.0043 25.8 8.4 68 272-339 47-117 (276)
285 3aay_A Putative thiosulfate su 37.7 34 0.0012 29.5 4.6 48 269-316 64-114 (277)
286 2qq5_A DHRS1, dehydrogenase/re 37.3 1.6E+02 0.0055 24.7 8.9 68 272-339 20-91 (260)
287 1jbk_A CLPB protein; beta barr 37.0 14 0.00046 29.3 1.7 16 108-123 43-58 (195)
288 2eg4_A Probable thiosulfate su 37.0 18 0.0006 30.4 2.5 36 281-316 184-219 (230)
289 1fov_A Glutaredoxin 3, GRX3; a 36.8 89 0.003 20.5 6.0 54 283-336 2-56 (82)
290 3cg4_A Response regulator rece 36.6 1E+02 0.0035 22.5 6.8 76 261-340 10-90 (142)
291 2eg4_A Probable thiosulfate su 36.4 36 0.0012 28.4 4.4 33 281-314 61-95 (230)
292 3h7a_A Short chain dehydrogena 36.3 1.9E+02 0.0065 24.2 9.4 69 272-340 22-92 (252)
293 1pjr_A PCRA; DNA repair, DNA r 35.7 12 0.00039 37.9 1.3 31 283-313 353-383 (724)
294 3qiv_A Short-chain dehydrogena 35.7 1.9E+02 0.0064 24.0 10.0 68 272-339 24-94 (253)
295 3v8b_A Putative dehydrogenase, 35.6 2.1E+02 0.0071 24.4 9.5 68 272-339 43-113 (283)
296 2pt7_A CAG-ALFA; ATPase, prote 35.2 8.6 0.00029 34.7 0.2 19 105-123 168-186 (330)
297 2ae2_A Protein (tropinone redu 35.0 2E+02 0.0068 24.0 10.1 68 272-339 24-95 (260)
298 1im5_A 180AA long hypothetical 34.6 1.7E+02 0.0058 23.1 8.7 59 273-331 111-174 (180)
299 1e0c_A Rhodanese, sulfurtransf 34.6 22 0.00076 30.6 2.8 35 281-315 223-258 (271)
300 3eod_A Protein HNR; response r 34.3 1.1E+02 0.0039 21.8 6.6 76 261-340 10-88 (130)
301 3o26_A Salutaridine reductase; 34.2 1.8E+02 0.0063 24.8 9.0 69 272-340 27-100 (311)
302 2p65_A Hypothetical protein PF 34.1 15 0.00051 29.0 1.5 16 108-123 43-58 (187)
303 1byk_A Protein (trehalose oper 34.1 1.9E+02 0.0067 23.7 9.8 97 261-359 94-208 (255)
304 2kjq_A DNAA-related protein; s 33.9 10 0.00035 29.7 0.4 18 107-124 35-52 (149)
305 3grc_A Sensor protein, kinase; 33.7 1.1E+02 0.0038 22.3 6.5 76 261-340 9-89 (140)
306 3aay_A Putative thiosulfate su 33.4 56 0.0019 28.1 5.3 35 281-315 226-262 (277)
307 2ouc_A Dual specificity protei 33.4 14 0.00048 28.0 1.2 35 281-315 83-126 (142)
308 2wci_A Glutaredoxin-4; redox-a 33.2 1.1E+02 0.0037 23.3 6.4 54 282-335 35-94 (135)
309 3gt7_A Sensor protein; structu 33.2 1.1E+02 0.0038 22.9 6.6 75 261-339 10-89 (154)
310 3lyl_A 3-oxoacyl-(acyl-carrier 33.1 2E+02 0.007 23.6 10.0 68 272-339 20-90 (247)
311 3rkr_A Short chain oxidoreduct 33.1 2.2E+02 0.0074 23.9 9.2 69 272-340 44-115 (262)
312 4ibo_A Gluconate dehydrogenase 33.1 2.1E+02 0.0071 24.3 9.0 68 272-339 41-111 (271)
313 2w58_A DNAI, primosome compone 33.0 19 0.00066 29.2 2.1 15 109-123 55-69 (202)
314 2rhc_B Actinorhodin polyketide 32.9 1.8E+02 0.0063 24.6 8.6 68 272-339 37-107 (277)
315 2eyu_A Twitching motility prot 32.0 9.1 0.00031 33.2 -0.2 18 105-122 22-39 (261)
316 3mwy_W Chromo domain-containin 31.8 18 0.00063 36.8 2.1 30 94-123 237-270 (800)
317 3b9p_A CG5977-PA, isoform A; A 31.8 22 0.00074 31.0 2.3 15 108-122 54-68 (297)
318 2qxy_A Response regulator; reg 31.6 1.1E+02 0.0037 22.4 6.2 75 261-340 7-84 (142)
319 1xkq_A Short-chain reductase f 31.6 2.3E+02 0.0079 24.0 9.1 67 273-339 22-94 (280)
320 3is3_A 17BETA-hydroxysteroid d 31.5 2.2E+02 0.0075 24.0 8.9 68 272-339 33-104 (270)
321 3i42_A Response regulator rece 31.5 99 0.0034 22.1 5.8 77 261-341 6-87 (127)
322 3cf0_A Transitional endoplasmi 31.5 19 0.00066 31.7 1.9 18 106-123 47-64 (301)
323 2v6i_A RNA helicase; membrane, 31.2 1.2E+02 0.0043 27.9 7.6 70 278-358 28-102 (431)
324 3jvd_A Transcriptional regulat 30.9 2.6E+02 0.009 24.2 12.4 98 261-359 153-270 (333)
325 3tjr_A Short chain dehydrogena 30.8 2.6E+02 0.0088 24.1 9.8 69 272-340 46-117 (301)
326 3r2j_A Alpha/beta-hydrolase-li 30.8 1.5E+02 0.005 24.9 7.3 66 273-339 148-218 (227)
327 1qpz_A PURA, protein (purine n 30.8 2.7E+02 0.0091 24.2 14.0 100 261-360 156-278 (340)
328 2bjv_A PSP operon transcriptio 30.8 15 0.00053 31.4 1.1 18 105-122 26-43 (265)
329 3hu5_A Isochorismatase family 30.6 1.3E+02 0.0044 24.6 6.9 67 272-339 116-187 (204)
330 1lv7_A FTSH; alpha/beta domain 30.5 21 0.00073 30.3 2.0 16 108-123 45-60 (257)
331 3h4m_A Proteasome-activating n 30.4 19 0.00063 31.2 1.6 17 106-122 49-65 (285)
332 2r44_A Uncharacterized protein 30.4 14 0.00048 32.9 0.8 23 100-122 38-60 (331)
333 2rjn_A Response regulator rece 30.4 1.3E+02 0.0044 22.4 6.6 76 261-340 10-88 (154)
334 2qu7_A Putative transcriptiona 30.4 2.4E+02 0.0083 23.6 10.6 97 261-357 101-223 (288)
335 3kke_A LACI family transcripti 30.1 2.5E+02 0.0087 23.8 14.3 97 261-357 110-233 (303)
336 3gyb_A Transcriptional regulat 30.1 2.4E+02 0.0082 23.5 10.3 97 261-357 97-212 (280)
337 3ai3_A NADPH-sorbose reductase 30.1 2.1E+02 0.0073 23.9 8.5 68 272-339 22-93 (263)
338 3i2v_A Adenylyltransferase and 30.0 16 0.00056 27.1 1.0 34 283-316 74-114 (127)
339 3f6p_A Transcriptional regulat 30.0 1.5E+02 0.005 21.0 6.8 75 261-339 5-81 (120)
340 1rhs_A Sulfur-substituted rhod 29.9 36 0.0012 29.8 3.4 36 281-316 240-276 (296)
341 3lte_A Response regulator; str 29.7 1.4E+02 0.0047 21.4 6.4 76 260-339 8-88 (132)
342 3tov_A Glycosyl transferase fa 29.6 1.4E+02 0.0049 26.6 7.5 90 267-366 203-296 (349)
343 3a28_C L-2.3-butanediol dehydr 29.6 2.2E+02 0.0076 23.7 8.5 67 273-339 18-89 (258)
344 3tox_A Short chain dehydrogena 29.5 2.2E+02 0.0075 24.3 8.5 68 272-339 23-93 (280)
345 3ftp_A 3-oxoacyl-[acyl-carrier 29.5 2.3E+02 0.0078 24.0 8.6 68 272-339 43-113 (270)
346 3h1t_A Type I site-specific re 29.4 81 0.0028 30.5 6.2 66 281-358 235-311 (590)
347 1kgd_A CASK, peripheral plasma 29.4 11 0.00037 30.4 -0.2 16 107-122 4-19 (180)
348 3tui_C Methionine import ATP-b 29.3 46 0.0016 30.4 4.0 50 107-156 53-111 (366)
349 3nbx_X ATPase RAVA; AAA+ ATPas 29.3 18 0.00062 34.7 1.4 24 99-122 32-55 (500)
350 2khp_A Glutaredoxin; thioredox 29.1 1.3E+02 0.0046 20.2 7.5 54 283-336 7-61 (92)
351 2rdm_A Response regulator rece 29.0 1.5E+02 0.0051 21.1 6.5 76 261-340 8-88 (132)
352 2zat_A Dehydrogenase/reductase 28.8 2.5E+02 0.0086 23.3 9.2 68 272-339 29-99 (260)
353 3svt_A Short-chain type dehydr 28.8 2.6E+02 0.0091 23.6 9.9 69 272-340 26-100 (281)
354 2wlr_A Putative thiosulfate su 28.5 61 0.0021 30.0 4.9 36 281-316 203-239 (423)
355 2z83_A Helicase/nucleoside tri 28.5 1.6E+02 0.0054 27.5 7.9 69 279-358 48-121 (459)
356 1xwi_A SKD1 protein; VPS4B, AA 28.5 31 0.0011 30.7 2.8 15 109-123 46-60 (322)
357 1t1v_A SH3BGRL3, SH3 domain-bi 28.4 84 0.0029 21.7 4.7 38 290-327 17-54 (93)
358 3tfo_A Putative 3-oxoacyl-(acy 28.4 2.7E+02 0.0092 23.5 10.8 68 272-339 19-89 (264)
359 2wem_A Glutaredoxin-related pr 28.4 1.8E+02 0.0061 21.4 7.0 44 282-325 20-70 (118)
360 1xq1_A Putative tropinone redu 28.3 2.6E+02 0.0088 23.3 9.6 68 272-339 29-100 (266)
361 1vl8_A Gluconate 5-dehydrogena 28.1 2.4E+02 0.0081 23.7 8.5 68 272-339 36-107 (267)
362 1o2d_A Alcohol dehydrogenase, 28.1 1.7E+02 0.0059 26.4 7.8 69 271-339 30-106 (371)
363 1jq5_A Glycerol dehydrogenase; 28.1 2E+02 0.0067 25.9 8.3 50 289-339 70-119 (370)
364 3hv2_A Response regulator/HD d 28.0 1.3E+02 0.0043 22.5 6.1 77 260-340 16-95 (153)
365 1p9r_A General secretion pathw 27.9 21 0.00073 33.3 1.6 24 99-122 156-181 (418)
366 3exa_A TRNA delta(2)-isopenten 27.7 13 0.00044 33.4 0.0 14 109-122 4-17 (322)
367 2pln_A HP1043, response regula 27.7 1.4E+02 0.005 21.5 6.3 74 260-340 20-95 (137)
368 3a8t_A Adenylate isopentenyltr 27.6 13 0.00044 33.7 0.0 15 108-122 40-54 (339)
369 1ae1_A Tropinone reductase-I; 27.6 2.7E+02 0.0094 23.4 11.2 68 272-339 36-107 (273)
370 3uug_A Multiple sugar-binding 27.6 2.9E+02 0.0099 23.6 11.1 155 203-359 47-244 (330)
371 3t6k_A Response regulator rece 27.2 1.6E+02 0.0056 21.3 6.5 77 260-340 6-87 (136)
372 1yb1_A 17-beta-hydroxysteroid 27.0 2.8E+02 0.0096 23.3 9.9 68 272-339 46-116 (272)
373 3gx8_A Monothiol glutaredoxin- 27.0 1.9E+02 0.0065 21.3 6.8 45 281-325 15-68 (121)
374 1njg_A DNA polymerase III subu 26.7 28 0.00094 28.6 2.0 13 110-122 47-59 (250)
375 2qmh_A HPR kinase/phosphorylas 26.7 16 0.00056 30.4 0.5 16 107-122 33-48 (205)
376 3hb7_A Isochorismatase hydrola 26.6 1.8E+02 0.0062 23.7 7.1 66 272-339 110-180 (204)
377 4da9_A Short-chain dehydrogena 26.4 2.5E+02 0.0084 23.9 8.3 68 272-339 44-115 (280)
378 2qz4_A Paraplegin; AAA+, SPG7, 26.1 28 0.00095 29.4 1.9 16 108-123 39-54 (262)
379 3bos_A Putative DNA replicatio 26.0 15 0.0005 30.5 0.1 17 107-123 51-67 (242)
380 3foz_A TRNA delta(2)-isopenten 26.0 15 0.00051 32.9 0.1 13 110-122 12-24 (316)
381 2qr3_A Two-component system re 25.9 1.1E+02 0.0038 22.2 5.3 76 261-340 6-89 (140)
382 2ewv_A Twitching motility prot 25.8 13 0.00045 34.1 -0.3 18 105-122 133-150 (372)
383 3v8e_A Nicotinamidase; hydrola 25.7 1.9E+02 0.0065 23.8 7.1 62 273-334 145-213 (216)
384 3pxx_A Carveol dehydrogenase; 25.7 3E+02 0.01 23.1 9.2 68 272-339 25-107 (287)
385 1lvg_A Guanylate kinase, GMP k 25.6 16 0.00054 29.9 0.2 16 107-122 3-18 (198)
386 2hsg_A Glucose-resistance amyl 25.6 2.8E+02 0.0097 23.9 8.7 99 261-359 156-278 (332)
387 2qgz_A Helicase loader, putati 25.5 23 0.0008 31.4 1.3 16 108-123 152-167 (308)
388 3k4h_A Putative transcriptiona 25.5 3E+02 0.01 23.0 11.6 97 261-357 110-228 (292)
389 3cxt_A Dehydrogenase with diff 25.3 3.1E+02 0.011 23.4 8.8 68 272-339 49-119 (291)
390 3ntd_A FAD-dependent pyridine 25.2 34 0.0012 32.9 2.6 35 282-316 525-559 (565)
391 4akg_A Glutathione S-transfera 25.0 46 0.0016 38.9 3.9 46 77-122 892-937 (2695)
392 2pl1_A Transcriptional regulat 24.9 1.8E+02 0.0061 20.3 6.2 67 269-339 12-80 (121)
393 3vkg_A Dynein heavy chain, cyt 24.9 46 0.0016 39.5 3.8 48 75-122 873-920 (3245)
394 1e7w_A Pteridine reductase; di 24.9 2.2E+02 0.0076 24.3 7.7 68 273-340 25-114 (291)
395 3afn_B Carbonyl reductase; alp 24.8 2.7E+02 0.0093 22.8 8.2 68 272-339 22-93 (258)
396 1e9r_A Conjugal transfer prote 24.5 16 0.00053 34.2 -0.1 18 106-123 51-68 (437)
397 3clk_A Transcription regulator 24.4 3.1E+02 0.011 22.9 11.1 99 261-359 104-224 (290)
398 1ofh_A ATP-dependent HSL prote 24.4 32 0.0011 29.8 2.1 16 108-123 50-65 (310)
399 2chg_A Replication factor C sm 24.4 34 0.0012 27.6 2.1 15 109-123 39-53 (226)
400 4egf_A L-xylulose reductase; s 24.3 2.1E+02 0.0072 24.1 7.4 68 272-339 35-106 (266)
401 2gkg_A Response regulator homo 24.3 1.1E+02 0.0038 21.5 4.9 73 261-337 8-86 (127)
402 3mwd_B ATP-citrate synthase; A 24.2 93 0.0032 27.9 5.1 50 284-333 83-133 (334)
403 3oid_A Enoyl-[acyl-carrier-pro 24.1 3.1E+02 0.011 22.8 9.7 67 273-339 20-90 (258)
404 1yt8_A Thiosulfate sulfurtrans 24.0 68 0.0023 30.8 4.5 36 280-315 62-98 (539)
405 3jvv_A Twitching mobility prot 23.9 17 0.00057 33.2 0.0 16 107-122 122-137 (356)
406 3gl9_A Response regulator; bet 23.8 2E+02 0.0067 20.4 6.4 75 261-339 5-84 (122)
407 3cnb_A DNA-binding response re 23.8 1.8E+02 0.0062 21.0 6.2 77 261-340 11-93 (143)
408 1yt8_A Thiosulfate sulfurtrans 23.7 55 0.0019 31.5 3.7 36 281-316 322-358 (539)
409 2yv2_A Succinyl-COA synthetase 23.5 1.3E+02 0.0043 26.4 5.8 54 284-339 75-129 (297)
410 1ex7_A Guanylate kinase; subst 23.4 19 0.00063 29.5 0.2 14 109-122 2-15 (186)
411 3m6m_D Sensory/regulatory prot 23.2 1.6E+02 0.0054 21.7 5.7 76 260-339 16-98 (143)
412 1nf9_A Phenazine biosynthesis 22.8 3E+02 0.01 22.2 7.9 66 272-338 132-202 (207)
413 3hws_A ATP-dependent CLP prote 22.8 34 0.0012 30.8 1.9 16 107-122 50-65 (363)
414 3a10_A Response regulator; pho 22.8 1.9E+02 0.0066 19.9 6.2 75 262-340 5-82 (116)
415 3pfi_A Holliday junction ATP-d 22.7 40 0.0014 29.9 2.3 14 109-122 56-69 (338)
416 1dbq_A Purine repressor; trans 22.5 3.4E+02 0.011 22.6 15.1 99 261-359 105-226 (289)
417 1xhf_A DYE resistance, aerobic 22.4 2E+02 0.007 20.0 6.4 75 261-339 6-82 (123)
418 3hdg_A Uncharacterized protein 22.4 1.8E+02 0.0061 20.9 5.9 76 261-340 10-88 (137)
419 3i1j_A Oxidoreductase, short c 22.4 2.3E+02 0.008 23.2 7.2 68 272-339 29-102 (247)
420 1geg_A Acetoin reductase; SDR 22.4 3.3E+02 0.011 22.5 9.9 68 272-339 17-87 (256)
421 3egc_A Putative ribose operon 22.4 3.4E+02 0.012 22.6 9.0 98 260-357 103-222 (291)
422 2x9g_A PTR1, pteridine reducta 22.3 3.6E+02 0.012 22.8 9.0 67 273-339 39-114 (288)
423 1ojl_A Transcriptional regulat 22.2 33 0.0011 30.3 1.6 17 106-122 23-39 (304)
424 1qkk_A DCTD, C4-dicarboxylate 22.2 1.3E+02 0.0043 22.5 5.0 75 262-340 7-84 (155)
425 3ics_A Coenzyme A-disulfide re 22.2 49 0.0017 32.0 3.1 36 281-316 541-576 (588)
426 2qor_A Guanylate kinase; phosp 22.0 18 0.0006 29.7 -0.2 18 105-122 9-26 (204)
427 3vaa_A Shikimate kinase, SK; s 22.0 20 0.00068 29.2 0.1 17 106-122 23-39 (199)
428 3ney_A 55 kDa erythrocyte memb 21.9 18 0.00061 29.9 -0.2 17 106-122 17-33 (197)
429 1mb3_A Cell division response 21.9 1.9E+02 0.0065 20.2 5.8 76 261-340 4-84 (124)
430 1mvo_A PHOP response regulator 21.9 1.8E+02 0.0063 20.8 5.8 75 261-339 6-83 (136)
431 3qmx_A Glutaredoxin A, glutare 21.8 2.1E+02 0.0072 20.0 6.0 43 282-324 16-59 (99)
432 3g1w_A Sugar ABC transporter; 21.8 3.6E+02 0.012 22.7 9.5 127 205-344 117-247 (305)
433 3awd_A GOX2181, putative polyo 21.8 3.3E+02 0.011 22.3 9.9 68 272-339 28-98 (260)
434 1rhs_A Sulfur-substituted rhod 21.7 54 0.0018 28.6 3.0 35 281-315 92-130 (296)
435 4fc7_A Peroxisomal 2,4-dienoyl 21.7 3.6E+02 0.012 22.7 8.5 68 272-339 42-113 (277)
436 1wma_A Carbonyl reductase [NAD 21.7 3E+02 0.01 22.7 7.9 68 272-339 19-90 (276)
437 2r62_A Cell division protease 21.7 24 0.00082 30.1 0.6 15 108-122 44-58 (268)
438 3ijr_A Oxidoreductase, short c 21.7 3.7E+02 0.013 22.8 8.6 68 272-339 62-133 (291)
439 2b4a_A BH3024; flavodoxin-like 21.7 1.6E+02 0.0056 21.2 5.5 78 261-342 18-100 (138)
440 3tau_A Guanylate kinase, GMP k 21.7 20 0.0007 29.5 0.1 16 107-122 7-22 (208)
441 2z06_A Putative uncharacterize 21.5 96 0.0033 26.6 4.4 50 287-339 121-170 (252)
442 2a9o_A Response regulator; ess 21.5 1.8E+02 0.0061 20.2 5.5 74 262-339 5-80 (120)
443 2j41_A Guanylate kinase; GMP, 21.4 19 0.00064 29.2 -0.1 17 106-122 4-20 (207)
444 3c3k_A Alanine racemase; struc 21.4 3.6E+02 0.012 22.5 11.9 97 261-357 103-220 (285)
445 2fcj_A Small toprim domain pro 21.3 2.6E+02 0.0088 20.8 6.6 55 283-340 5-59 (119)
446 2qhx_A Pteridine reductase 1; 21.2 4E+02 0.014 23.2 8.8 69 272-340 61-151 (328)
447 1z6g_A Guanylate kinase; struc 21.2 22 0.00074 29.6 0.2 17 106-122 21-37 (218)
448 3v2g_A 3-oxoacyl-[acyl-carrier 21.2 3.7E+02 0.013 22.6 9.8 67 273-339 47-117 (271)
449 1okg_A Possible 3-mercaptopyru 21.1 82 0.0028 28.7 4.1 36 281-316 95-132 (373)
450 1fiu_A Type II restriction enz 21.1 49 0.0017 28.4 2.3 50 311-360 190-248 (286)
451 1k68_A Phytochrome response re 21.0 2.3E+02 0.0079 20.1 6.7 77 261-340 5-94 (140)
452 3crn_A Response regulator rece 21.0 2.3E+02 0.0079 20.2 6.2 76 261-340 6-84 (132)
453 1yzv_A Hypothetical protein; s 20.9 2E+02 0.0067 23.5 6.1 68 272-339 100-174 (204)
454 3f1l_A Uncharacterized oxidore 20.9 3.3E+02 0.011 22.5 7.9 68 272-339 27-100 (252)
455 1x1t_A D(-)-3-hydroxybutyrate 20.8 3.1E+02 0.011 22.7 7.7 67 273-339 20-91 (260)
456 2qzj_A Two-component response 20.8 2.4E+02 0.0083 20.3 6.5 75 261-339 7-83 (136)
457 3eie_A Vacuolar protein sortin 20.8 48 0.0016 29.3 2.5 15 108-122 51-65 (322)
458 1t6t_1 Putative protein; struc 20.7 2.7E+02 0.0091 20.7 6.4 65 268-340 6-71 (118)
459 1ug0_A Splicing factor 4; SURP 20.7 13 0.00045 26.4 -1.1 13 1-13 2-14 (88)
460 1t3k_A Arath CDC25, dual-speci 20.6 70 0.0024 24.7 3.2 36 281-316 85-130 (152)
461 3syl_A Protein CBBX; photosynt 20.6 22 0.00074 31.1 0.1 16 108-123 67-82 (309)
462 2gt1_A Lipopolysaccharide hept 20.6 2.9E+02 0.0098 23.9 7.7 89 267-366 196-288 (326)
463 1v5x_A PRA isomerase, phosphor 20.5 1.5E+02 0.0053 24.3 5.4 51 268-320 40-90 (203)
464 3h5t_A Transcriptional regulat 20.5 4.3E+02 0.015 23.1 13.4 98 261-358 168-306 (366)
465 2fq1_A Isochorismatase; ENTB, 20.4 3.3E+02 0.011 23.3 7.9 67 272-339 135-206 (287)
466 2jah_A Clavulanic acid dehydro 20.3 3.6E+02 0.012 22.1 11.2 68 272-339 22-92 (247)
467 2ze6_A Isopentenyl transferase 20.3 22 0.00076 30.4 0.1 12 111-122 4-15 (253)
468 1b93_A Protein (methylglyoxal 20.3 87 0.003 24.6 3.5 41 299-340 50-91 (152)
469 4iin_A 3-ketoacyl-acyl carrier 20.2 3.8E+02 0.013 22.4 9.8 68 272-339 44-115 (271)
470 2wt9_A Nicotinamidase; hydrola 20.0 2.2E+02 0.0075 23.7 6.4 65 273-338 158-228 (235)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.7e-42 Score=331.32 Aligned_cols=294 Identities=25% Similarity=0.350 Sum_probs=245.4
Q ss_pred cccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc----------
Q psy7790 65 GRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---------- 131 (367)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---------- 131 (367)
.+..+|..+++++.+++++...+ ..|+++ |+++|+.+++|+|++++|+|||||| |..|+...+
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~i----Q~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~ 128 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPI----QKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELG 128 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccC
Confidence 34568999999999999997666 889999 9999999999999999999999999 778887653
Q ss_pred cCCccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhh
Q psy7790 132 RAPRCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQ 195 (367)
Q Consensus 132 ~~~~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~ 195 (367)
.+...+.+++++++.++.+. ..+.+||.....+...+.. ++||+++++.+....+ ....+..-
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-~l~~~~~l 207 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFI-TFEDTRFV 207 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSC-CCTTCCEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCc-ccccCCeE
Confidence 23455778888777666542 2334566554333332221 6899999999875432 23333332
Q ss_pred ccc-------ccchHHHHHHHhhc--cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech
Q psy7790 196 GIP-------AALSEDVRTIFSFF--RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ 266 (367)
Q Consensus 196 ~ip-------~~l~~~v~~Il~~l--~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 266 (367)
+++ ..+.++++.|+..+ +.++|+++||||+|..+..++..++.++..+.++..+. ...++.|.+..+..
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG--ACSDVKQTIYEVNK 285 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC--CCTTEEEEEEECCG
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc--cccccceEEEEeCc
Confidence 332 23447888888875 57899999999999999999999999999999887766 67789999999999
Q ss_pred hhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCC
Q psy7790 267 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLD 346 (367)
Q Consensus 267 ~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD 346 (367)
..|...|.+++.....++||||+|+..|+.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||++++||||
T Consensus 286 ~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlD 365 (434)
T 2db3_A 286 YAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365 (434)
T ss_dssp GGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCC
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEcCCCCCcccc
Q psy7790 347 FEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 347 i~~v~~VI~yd~P~~~~~Y 365 (367)
+|+|++|||||+|.++++|
T Consensus 366 i~~v~~VI~~d~p~~~~~y 384 (434)
T 2db3_A 366 IKNIKHVINYDMPSKIDDY 384 (434)
T ss_dssp CTTCCEEEESSCCSSHHHH
T ss_pred cccCCEEEEECCCCCHHHH
Confidence 9999999999999999887
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=294.36 Aligned_cols=294 Identities=27% Similarity=0.409 Sum_probs=232.0
Q ss_pred cccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc---------
Q psy7790 65 GRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR--------- 132 (367)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~--------- 132 (367)
.+..+|+++++++.+.+++...+ ..|++. |+++|+.++.|+|++++|+||+||| |..|+...+.
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~----Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPV----QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 44567999999999999997766 889999 9999999999999999999999999 6777765421
Q ss_pred --------------CCccccCCCHHHHHHHHhcc-----------CeEEecCCCCcccccccc-----CCCCHHHHHHHH
Q psy7790 133 --------------APRCILSLPDQVHDIIRRNL-----------RILVEGDDVPPACCSFRL-----MKLPESLVRALE 182 (367)
Q Consensus 133 --------------~~~~i~~~~~~~~~~~~~~~-----------~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~ 182 (367)
+...+..++.+.+.++.+.+ ....||.....+...+.. ++||+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 88 AMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 167 (417)
T ss_dssp HHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHH
T ss_pred ccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHH
Confidence 23456677776665554421 123355444333333322 689999999887
Q ss_pred HcCCCCCChhhhhccccc-------chHHHHHHHhhc--c--CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCcc
Q psy7790 183 AKGIKKPTPIQVQGIPAA-------LSEDVRTIFSFF--R--GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKI 251 (367)
Q Consensus 183 ~~g~~~pt~iQ~~~ip~~-------l~~~v~~Il~~l--~--~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~ 251 (367)
...+. ...+..-+++.+ +...+..++... + ..+|++++|||++..+..++..++.++..+.+.....
T Consensus 168 ~~~~~-~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~- 245 (417)
T 2i4i_A 168 RGKIG-LDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS- 245 (417)
T ss_dssp TTSBC-CTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred cCCcC-hhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCC-
Confidence 64322 222222222221 336677777643 2 2689999999999999999999999999888876655
Q ss_pred CCCCcceEEEEEechhhHHHHHHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc
Q psy7790 252 MPSMNVVQEVEYVKQEAKIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 252 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 329 (367)
...++.+.+..+....+...+.+++... +.++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 246 -~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (417)
T 2i4i_A 246 -TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 324 (417)
T ss_dssp -CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred -CccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc
Confidence 6678899999999999999999999875 4579999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 330 GQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 330 g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+.+|||||+++++|+|+|+|++||+||+|.++..|
T Consensus 325 g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~ 360 (417)
T 2i4i_A 325 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 360 (417)
T ss_dssp TSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHH
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHH
Confidence 999999999999999999999999999999998876
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.5e-36 Score=290.13 Aligned_cols=293 Identities=18% Similarity=0.305 Sum_probs=232.9
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCccc
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCI 137 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i 137 (367)
...+|+++++++.+.+++...+ ..+++. |+++++.+++|+|++++++||+||| |..|+...+. +...+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~li 110 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAI----QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALI 110 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEE
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEE
Confidence 4467999999999999997666 778998 9999999999999999999999999 6677765542 24456
Q ss_pred cCCCHHHHHHHHhc-------c----CeEEecCCCCccccccc-----cCCCCHHHHHHHHHcCCCCCChhhhhccc---
Q psy7790 138 LSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFR-----LMKLPESLVRALEAKGIKKPTPIQVQGIP--- 198 (367)
Q Consensus 138 ~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~-----~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip--- 198 (367)
..++.+.+.++.+. . ...+||.........+. -+++|+++.+.+....+. ...+..-+++
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~-~~~~~~vViDEah 189 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR-TRAIKMLVLDEAD 189 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSC-CTTCCEEEEETHH
T ss_pred EcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCcc-HhheeEEEEccHH
Confidence 77777666655542 1 12234444333322222 167999999998764332 2222222222
Q ss_pred ----ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhh-HHHHH
Q psy7790 199 ----AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYL 273 (367)
Q Consensus 199 ----~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l 273 (367)
..+...+..++..++..+|++++|||++..+..++..++.+|..+.+..... ...++.+.+..+.... +...|
T Consensus 190 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 190 EMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL--TLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC--SCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc--cCCCceEEEEEeCcHHhHHHHH
Confidence 2233778888888889999999999999999999989999999887765554 5667888888887654 88888
Q ss_pred HHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCE
Q psy7790 274 LECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKH 352 (367)
Q Consensus 274 ~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 352 (367)
..++.... +++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 268 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 268 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 88887644 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcccc
Q psy7790 353 VINTEAKIKKREH 365 (367)
Q Consensus 353 VI~yd~P~~~~~Y 365 (367)
|||||+|.++..|
T Consensus 348 Vi~~~~p~s~~~~ 360 (410)
T 2j0s_A 348 IINYDLPNNRELY 360 (410)
T ss_dssp EEESSCCSSHHHH
T ss_pred EEEECCCCCHHHH
Confidence 9999999998876
No 4
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.1e-34 Score=276.47 Aligned_cols=291 Identities=19% Similarity=0.239 Sum_probs=226.9
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc--ccccccccccCCcc--ccCcccccccC-----Cc
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET--KALMGVAELAKGIQ--YNDPIKTSWRA-----PR 135 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g--~d~~~~a~TgsGKT--~~~p~~~~~~~-----~~ 135 (367)
...+|+++++++.+.+.+...+ ..+++. |.++++.++.| ++++++|+||+||| |..|+...+.. ..
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKI----QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQC 98 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCE
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCE
Confidence 3467999999999999997666 788998 99999999997 99999999999999 66777655432 33
Q ss_pred cccCCCHHHHHHHHhc----------cC--eEEecCCCCcccccccc--CCCCHHHHHHHHHcCCCCCChhhhhcccc--
Q psy7790 136 CILSLPDQVHDIIRRN----------LR--ILVEGDDVPPACCSFRL--MKLPESLVRALEAKGIKKPTPIQVQGIPA-- 199 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~~----------~~--i~~~g~~~~~~~~~f~~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~-- 199 (367)
.+..++.+.+.++.+. .. ...+|.........-.+ +++|+++++.+...++..+..+..-+++.
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 4567776665554321 11 12233333222111111 68999999998765554433332222222
Q ss_pred ------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech-hhHHHH
Q psy7790 200 ------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ-EAKIVY 272 (367)
Q Consensus 200 ------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 272 (367)
.+...+..++..++.++|++++|||++..+..++..++.++..+....... ....+.+.+..+.. ..+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 256 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLDTIKQYYVLCSSRDEKFQA 256 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS--SCTTEEEEEEECSSHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc--cccCceEEEEEcCChHHHHHH
Confidence 222566677778888999999999999999999999999999888876655 56677787777754 567778
Q ss_pred HHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCC
Q psy7790 273 LLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIK 351 (367)
Q Consensus 273 l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~ 351 (367)
+..++... .+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 257 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 257 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEE
T ss_pred HHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCC
Confidence 88877764 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCc
Q psy7790 352 HVINTEAKIKK 362 (367)
Q Consensus 352 ~VI~yd~P~~~ 362 (367)
+||+||+|.+.
T Consensus 337 ~Vi~~~~p~~~ 347 (412)
T 3fht_A 337 VVINFDLPVDK 347 (412)
T ss_dssp EEEESSCCBCS
T ss_pred EEEEECCCCCC
Confidence 99999999654
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.4e-35 Score=279.55 Aligned_cols=293 Identities=19% Similarity=0.305 Sum_probs=222.9
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCccc
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCI 137 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i 137 (367)
...+|+.+++++.+.+.+...+ ..+++. |+++|+.++.|+|++++++||+||| |..|+...+. ....+
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~----Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 113 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAI----QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALV 113 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHH----HHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEE
Confidence 3467999999999999987666 778888 9999999999999999999999999 6666665532 23345
Q ss_pred cCCCHHHHHHHHhc-------cCe----EEecCCCCccccccc------cCCCCHHHHHHHHHcCCCCCChhhhhcccc-
Q psy7790 138 LSLPDQVHDIIRRN-------LRI----LVEGDDVPPACCSFR------LMKLPESLVRALEAKGIKKPTPIQVQGIPA- 199 (367)
Q Consensus 138 ~~~~~~~~~~~~~~-------~~i----~~~g~~~~~~~~~f~------~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~- 199 (367)
..++...+.++.+. ..+ .++|.........+. -+++|+++.+.+....+. ...+..-+++.
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~-~~~~~~vViDEa 192 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLS-PKYIKMFVLDEA 192 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSC-STTCCEEEECSH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc-cccCcEEEEECH
Confidence 66666555554432 122 234443332222221 167999999998764332 22222222222
Q ss_pred ------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechh-hHHHH
Q psy7790 200 ------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQE-AKIVY 272 (367)
Q Consensus 200 ------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~ 272 (367)
.+...+..++..++.++|++++|||++..+..++..++.++..+....... ....+.+.+..+... .+...
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 270 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL--TLEGIRQFYINVEREEWKLDT 270 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCC--CTTSCCEEEEECSSSTTHHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCcc--CCCCceEEEEEeChHHhHHHH
Confidence 233677888888999999999999999999999999999999888766655 566777887777654 48888
Q ss_pred HHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCC
Q psy7790 273 LLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIK 351 (367)
Q Consensus 273 l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~ 351 (367)
+..++.... +++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 271 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 350 (414)
T 3eiq_A 271 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 350 (414)
T ss_dssp HHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCS
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCC
Confidence 888887754 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcccc
Q psy7790 352 HVINTEAKIKKREH 365 (367)
Q Consensus 352 ~VI~yd~P~~~~~Y 365 (367)
+||+||+|.++..|
T Consensus 351 ~Vi~~~~p~s~~~~ 364 (414)
T 3eiq_A 351 LVINYDLPTNRENY 364 (414)
T ss_dssp CEEESSCCSSTHHH
T ss_pred EEEEeCCCCCHHHh
Confidence 99999999998876
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=293.92 Aligned_cols=289 Identities=18% Similarity=0.242 Sum_probs=128.2
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc--ccccccccccCCcc--ccCcccccccC-----Ccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET--KALMGVAELAKGIQ--YNDPIKTSWRA-----PRC 136 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g--~d~~~~a~TgsGKT--~~~p~~~~~~~-----~~~ 136 (367)
..+|..+.+++.+.+++...+ ..|+++ |.++++.++.| +|++++|+|||||| |..|+...+.. ...
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~----Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~l 166 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKI----QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 166 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHH----HHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEE
Confidence 357999999999999997666 888999 99999999998 99999999999999 77887766532 345
Q ss_pred ccCCCHHHHHHHHhc----------cCe--EEecCCCCcccccccc--CCCCHHHHHHHHHcCCCCCChhhhhcccc---
Q psy7790 137 ILSLPDQVHDIIRRN----------LRI--LVEGDDVPPACCSFRL--MKLPESLVRALEAKGIKKPTPIQVQGIPA--- 199 (367)
Q Consensus 137 i~~~~~~~~~~~~~~----------~~i--~~~g~~~~~~~~~f~~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~--- 199 (367)
+..++.+++.++... +.+ .++|.........-.+ +++|+++++.+.+.++..+..+..-+++.
T Consensus 167 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred EEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 667777666554221 122 2333333222111111 68999999998776655443333333332
Q ss_pred -----cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEech-hhHHHHH
Q psy7790 200 -----ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ-EAKIVYL 273 (367)
Q Consensus 200 -----~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l 273 (367)
.+...+..++..++.++|+++||||++..+..++..++.++..+....... ....+.+.+..+.. ..+...|
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLDTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc--CcCCceEEEEEeCCHHHHHHHH
Confidence 222566777888888999999999999999999999999999998877665 56677788777765 4667777
Q ss_pred HHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCE
Q psy7790 274 LECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKH 352 (367)
Q Consensus 274 ~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 352 (367)
..++... .+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++
T Consensus 325 ~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 7777654 467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC
Q psy7790 353 VINTEAKIK 361 (367)
Q Consensus 353 VI~yd~P~~ 361 (367)
|||||+|.+
T Consensus 405 VI~~d~p~~ 413 (479)
T 3fmp_B 405 VINFDLPVD 413 (479)
T ss_dssp ---------
T ss_pred EEEecCCCC
Confidence 999999954
No 7
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-34 Score=291.00 Aligned_cols=294 Identities=19% Similarity=0.262 Sum_probs=215.8
Q ss_pred CCcccHh----hhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhH--hcccccccccccCCcc--ccCccccccc------
Q psy7790 68 SNISLLD----QHSELKKMAEAKK-ESAKEKQLKEEEKILRSVA--ETKALMGVAELAKGIQ--YNDPIKTSWR------ 132 (367)
Q Consensus 68 ~~~~~l~----~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~--~g~d~~~~a~TgsGKT--~~~p~~~~~~------ 132 (367)
..|..|. +++++++++...+ ..+++. |+++|+.++ .|+|++++|+||+||| |.+|+...+.
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~ 92 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPV----QQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS 92 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHH----HHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc
Confidence 4566665 8899999997777 778998 999999999 8899999999999999 7888775431
Q ss_pred ---CCccccCCCHHHHHHHHhcc---------------CeEEecCCCCcccccccc------CCCCHHHHHHHHHcCCCC
Q psy7790 133 ---APRCILSLPDQVHDIIRRNL---------------RILVEGDDVPPACCSFRL------MKLPESLVRALEAKGIKK 188 (367)
Q Consensus 133 ---~~~~i~~~~~~~~~~~~~~~---------------~i~~~g~~~~~~~~~f~~------l~~p~~ll~~l~~~g~~~ 188 (367)
+...+..++.+++.++...+ ...++|.........+.. ++||+++++.+.......
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 23456677766655544321 123455544333333321 689999999886531111
Q ss_pred CChhhhhcc-------cccchHHHHHHHhhccC-------CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCC--ccC
Q psy7790 189 PTPIQVQGI-------PAALSEDVRTIFSFFRG-------QRQTLLFSATMPKKIQNFARSALVKPITINVGRAG--KIM 252 (367)
Q Consensus 189 pt~iQ~~~i-------p~~l~~~v~~Il~~l~~-------~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~--~~~ 252 (367)
...+..-++ ...+.+++..|+..++. ++|+++||||+++.+..++..++.++..+.+.... ...
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 111111122 22245777777776642 67999999999999999999999988776554321 222
Q ss_pred CCCcceEEEEEechh-hH----HHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhC---CCeEEEEecCCCHHHHHH
Q psy7790 253 PSMNVVQEVEYVKQE-AK----IVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLK---GVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~-~k----~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~ 322 (367)
....+.+.+..+... .+ +..+...+.. .+.++||||+|+..|+.++..|... ++.+..+||+|++.+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 345667777766542 22 2333444442 3457999999999999999999876 999999999999999999
Q ss_pred HHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 323 ~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+++.|++|+.+|||||++++||||+|+|++|||||+|.+++.|
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y 375 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 375 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHH
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHh
Confidence 9999999999999999999999999999999999999999887
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-33 Score=270.15 Aligned_cols=291 Identities=18% Similarity=0.233 Sum_probs=225.7
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-----Ccccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-----PRCIL 138 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-----~~~i~ 138 (367)
..+|+++++++.+.+++...+ ..+++. |+++++.++.|++++++++||+||| |..|+...+.. ...+.
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPI----QEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 457999999999999997666 778888 9999999999999999999999999 66777665421 33456
Q ss_pred CCCHHHHHHHHhc-------cCe----EEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhcccc---
Q psy7790 139 SLPDQVHDIIRRN-------LRI----LVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIPA--- 199 (367)
Q Consensus 139 ~~~~~~~~~~~~~-------~~i----~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~--- 199 (367)
.++...+.++.+. .++ ..||.........+.. +++|+.+.+.+.... .....+..-+++.
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDEADK 174 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeCchH
Confidence 6666555444332 122 2233322222111111 679999988876532 2222222222222
Q ss_pred ----cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHH
Q psy7790 200 ----ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275 (367)
Q Consensus 200 ----~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 275 (367)
.+...+..++..++...|++++|||++..+..++..++.++..+...... ...++.+.+..+....|...+..
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~l~~ 251 (400)
T 1s2m_A 175 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL---TLKGITQYYAFVEERQKLHCLNT 251 (400)
T ss_dssp HSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSC---BCTTEEEEEEECCGGGHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecccc---ccCCceeEEEEechhhHHHHHHH
Confidence 12255677777788899999999999999999999999998877654432 35577888888888889888888
Q ss_pred HHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 276 CLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 276 ~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
++.... +++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 252 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 252 LFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred HHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 887754 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccc
Q psy7790 355 NTEAKIKKREH 365 (367)
Q Consensus 355 ~yd~P~~~~~Y 365 (367)
+||+|.++..|
T Consensus 332 ~~~~p~s~~~~ 342 (400)
T 1s2m_A 332 NFDFPKTAETY 342 (400)
T ss_dssp ESSCCSSHHHH
T ss_pred EeCCCCCHHHH
Confidence 99999998776
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.1e-33 Score=269.73 Aligned_cols=292 Identities=20% Similarity=0.256 Sum_probs=227.3
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCccccC
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCILS 139 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i~~ 139 (367)
..|+++++++.+.+++...+ ..+++. |.++++.++.|+|++++++||+||| |..|+...+. +...+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 83 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEV----QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 83 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHH----HHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEEC
Confidence 46999999999999997766 668888 9999999999999999999999999 5667665532 2344567
Q ss_pred CCHHHHHHHHhcc--------Ce----EEecCCCCccccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhcccc--
Q psy7790 140 LPDQVHDIIRRNL--------RI----LVEGDDVPPACCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPA-- 199 (367)
Q Consensus 140 ~~~~~~~~~~~~~--------~i----~~~g~~~~~~~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~-- 199 (367)
++...+.++.+.+ .+ ..||.........+. + +++|+.+...+....+. ...+..-+++.
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN-LKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSC-CTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc-ccccCEEEEeCHH
Confidence 7766655543321 11 223333222221111 1 57999999887754332 22222222221
Q ss_pred ------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHH
Q psy7790 200 ------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273 (367)
Q Consensus 200 ------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 273 (367)
.+...+..++...+..+|++++|||++..+..++..++.++..+....... .....+.+.+..+....+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 241 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK-LTLHGLQQYYVKLKDNEKNRKL 241 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC-CCCTTCEEEEEECCGGGHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc-cCcccceEEEEEcCchhHHHHH
Confidence 222566777777888999999999999999999999999998887765433 1345678888888888999999
Q ss_pred HHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCE
Q psy7790 274 LECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKH 352 (367)
Q Consensus 274 ~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~ 352 (367)
..++.... +++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 242 ~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 242 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 98888764 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcccc
Q psy7790 353 VINTEAKIKKREH 365 (367)
Q Consensus 353 VI~yd~P~~~~~Y 365 (367)
||+|++|.++..|
T Consensus 322 Vi~~~~p~s~~~~ 334 (391)
T 1xti_A 322 AFNYDMPEDSDTY 334 (391)
T ss_dssp EEESSCCSSHHHH
T ss_pred EEEeCCCCCHHHH
Confidence 9999999998876
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-33 Score=263.96 Aligned_cols=288 Identities=20% Similarity=0.299 Sum_probs=224.9
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc-ccccccccccCCcc--ccCccccccc----CCcccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET-KALMGVAELAKGIQ--YNDPIKTSWR----APRCIL 138 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g-~d~~~~a~TgsGKT--~~~p~~~~~~----~~~~i~ 138 (367)
..+|+++++++.+.+.+.+.+ ..+++. |+++++.+++| +++++.++||+||| |..|+...+. +...+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil 80 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDI----QMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIIL 80 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHH----HHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEE
Confidence 356999999999999997777 778888 99999999998 79999999999999 5566655432 233456
Q ss_pred CCCHHHHHHHHhcc-------Ce----EEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccc----
Q psy7790 139 SLPDQVHDIIRRNL-------RI----LVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPA---- 199 (367)
Q Consensus 139 ~~~~~~~~~~~~~~-------~i----~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---- 199 (367)
.++...+.++.+.+ .+ ..||.........+.. +++|+.+.+.+....+. ...+..-+++.
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~iIiDEah~~ 159 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLN-LKNVKYFILDEADEM 159 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSC-TTSCCEEEEETHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcc-cccCCEEEEeCchHh
Confidence 66665555444321 11 2233332222222222 67999999887754322 12222222221
Q ss_pred ---cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHH
Q psy7790 200 ---ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLEC 276 (367)
Q Consensus 200 ---~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 276 (367)
.+...+..++..++...+++++|||++..+..++..++.++..+.... ..++.+.+..+....+...+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHHHHHH
Confidence 122567778888888999999999999999999999998877766542 33677888888899999999999
Q ss_pred HhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEc
Q psy7790 277 LQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINT 356 (367)
Q Consensus 277 l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~y 356 (367)
+...+.++||||++++.++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 234 l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~ 313 (367)
T 1hv8_A 234 LKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINY 313 (367)
T ss_dssp HCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEES
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEe
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccc
Q psy7790 357 EAKIKKREH 365 (367)
Q Consensus 357 d~P~~~~~Y 365 (367)
++|.++..|
T Consensus 314 ~~~~s~~~~ 322 (367)
T 1hv8_A 314 HLPQNPESY 322 (367)
T ss_dssp SCCSCHHHH
T ss_pred cCCCCHHHh
Confidence 999998776
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.4e-33 Score=263.54 Aligned_cols=291 Identities=18% Similarity=0.245 Sum_probs=221.1
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc--ccccccccccCCcc--ccCccccccc-----CCccc
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET--KALMGVAELAKGIQ--YNDPIKTSWR-----APRCI 137 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g--~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i 137 (367)
.+|+++++++.+.+++...+ ..+++. |.++++.++.| ++++++++||+||| |..|+...+. +...+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~----Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 80 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKI----QERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAIC 80 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEE
Confidence 57999999999999997766 888998 99999999998 99999999999999 5667665542 23445
Q ss_pred cCCCHHHHHHHHhc-------cCeEE----ecCCCCccccccc-cCCCCHHHHHHHHHcCCCCCChhhhhcccc------
Q psy7790 138 LSLPDQVHDIIRRN-------LRILV----EGDDVPPACCSFR-LMKLPESLVRALEAKGIKKPTPIQVQGIPA------ 199 (367)
Q Consensus 138 ~~~~~~~~~~~~~~-------~~i~~----~g~~~~~~~~~f~-~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~------ 199 (367)
..++...+.++.+. ..+.+ ++........... -+++|+.+.+.+....+. ...+..-+++.
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQ-LQKIKIFVLDEADNMLD 159 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBC-CTTCCEEEEETHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcc-cccCCEEEEEChhhhcC
Confidence 66676555554432 11111 1211111110111 167999999988654322 22222222221
Q ss_pred --cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec-hhhHHHHHHHH
Q psy7790 200 --ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK-QEAKIVYLLEC 276 (367)
Q Consensus 200 --~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~ 276 (367)
.+...+..+...++.+.|++++|||++..+..++..++.++..+....... ....+.+.+..+. ...+...+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (395)
T 3pey_A 160 QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV--NVDAIKQLYMDCKNEADKFDVLTEL 237 (395)
T ss_dssp STTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC--SCTTEEEEEEECSSHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc--ccccccEEEEEcCchHHHHHHHHHH
Confidence 222556667777888999999999999999999999999988887766554 5566777777764 45667777777
Q ss_pred HhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 277 LQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 277 l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
+.... +++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 238 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 238 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp HTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred HHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 76544 67999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------Ccccc
Q psy7790 356 TEAKI------KKREH 365 (367)
Q Consensus 356 yd~P~------~~~~Y 365 (367)
||+|. ++..|
T Consensus 318 ~~~p~~~~~~~s~~~~ 333 (395)
T 3pey_A 318 YDLPTLANGQADPATY 333 (395)
T ss_dssp SSCCBCTTSSBCHHHH
T ss_pred cCCCCCCcCCCCHHHh
Confidence 99998 66655
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.2e-34 Score=285.88 Aligned_cols=294 Identities=19% Similarity=0.264 Sum_probs=213.8
Q ss_pred CCcccHh----hhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhH--hcccccccccccCCcc--ccCccccccc------
Q psy7790 68 SNISLLD----QHSELKKMAEAKK-ESAKEKQLKEEEKILRSVA--ETKALMGVAELAKGIQ--YNDPIKTSWR------ 132 (367)
Q Consensus 68 ~~~~~l~----~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~--~g~d~~~~a~TgsGKT--~~~p~~~~~~------ 132 (367)
..|..+. +++.+.+++...+ ..++++ |.++|+.++ .|+|++++|+||+||| |..|+...+.
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~ 143 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPV----QQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS 143 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHH----HHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc
Confidence 4566676 8899999987666 778998 999999999 7899999999999999 7888776531
Q ss_pred ---CCccccCCCHHHHHHHHhc---------------cCeEEecCCCCccccccc------cCCCCHHHHHHHHHcCCCC
Q psy7790 133 ---APRCILSLPDQVHDIIRRN---------------LRILVEGDDVPPACCSFR------LMKLPESLVRALEAKGIKK 188 (367)
Q Consensus 133 ---~~~~i~~~~~~~~~~~~~~---------------~~i~~~g~~~~~~~~~f~------~l~~p~~ll~~l~~~g~~~ 188 (367)
+...+..++.+++.++... ....++|.........+. -++||+++++.+.......
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 1345667776655544332 112345544333333221 1679999999886531111
Q ss_pred CChhhhhccc-------ccchHHHHHHHhhcc-------CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCC--ccC
Q psy7790 189 PTPIQVQGIP-------AALSEDVRTIFSFFR-------GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAG--KIM 252 (367)
Q Consensus 189 pt~iQ~~~ip-------~~l~~~v~~Il~~l~-------~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~--~~~ 252 (367)
...+..-+++ ..+.+++..|+..++ .++|+++||||++..+..++..++.++..+.+.... ...
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 1111111222 123466677766653 367999999999999999999999987766553322 222
Q ss_pred CCCcceEEEEEechh-hH----HHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhC---CCeEEEEecCCCHHHHHH
Q psy7790 253 PSMNVVQEVEYVKQE-AK----IVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLK---GVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~-~k----~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~ 322 (367)
....+.+.+..+... .+ ...+...+.. .+.++||||+|+..|+.++..|... ++.+..+||+|++.+|..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Confidence 344667777666542 22 2333333432 3457999999999999999999876 999999999999999999
Q ss_pred HHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 323 ~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+++.|++|+.+|||||+++++|||+|+|++|||||+|.++..|
T Consensus 384 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y 426 (563)
T 3i5x_A 384 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 426 (563)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHH
T ss_pred HHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhh
Confidence 9999999999999999999999999999999999999999887
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.98 E-value=2e-33 Score=268.06 Aligned_cols=292 Identities=17% Similarity=0.275 Sum_probs=123.7
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCcccc
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCIL 138 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i~ 138 (367)
..+|+++++++.+.+.+...+ ..+++. |+++++.++.|+|++++++||+||| |..|+...+. +...+.
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAI----QQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 95 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHH----HHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 457999999999999997666 788888 9999999999999999999999999 5667665432 234466
Q ss_pred CCCHHHHHHHHhc-------cCe----EEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccc----
Q psy7790 139 SLPDQVHDIIRRN-------LRI----LVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPA---- 199 (367)
Q Consensus 139 ~~~~~~~~~~~~~-------~~i----~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---- 199 (367)
.++...+.++.+. ..+ ..||.........+.. +++|+.+.+.+....+. ...+..-+++.
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~-~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFR-TDKIKMFILDEADEM 174 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSC-CTTCCEEEEETHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcc-hhhCcEEEEEChHHh
Confidence 7776665554432 112 2233332222222211 67999999988754332 12222222221
Q ss_pred ---cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhh-HHHHHHH
Q psy7790 200 ---ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLE 275 (367)
Q Consensus 200 ---~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ 275 (367)
.+...+..++..++..+|++++|||++..+..+...++.++..+....... ...++.+.+..+.... +...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL--TLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc--cCCCceEEEEEcCchhhHHHHHHH
Confidence 133667788888888999999999999999999999999999888766544 4556666666665544 6666666
Q ss_pred HHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE
Q psy7790 276 CLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI 354 (367)
Q Consensus 276 ~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI 354 (367)
++... .+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 66553 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccc
Q psy7790 355 NTEAKIKKREH 365 (367)
Q Consensus 355 ~yd~P~~~~~Y 365 (367)
+||+|.++..|
T Consensus 333 ~~~~p~s~~~~ 343 (394)
T 1fuu_A 333 NYDLPANKENY 343 (394)
T ss_dssp -----------
T ss_pred EeCCCCCHHHH
Confidence 99999998877
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=5.4e-32 Score=270.55 Aligned_cols=284 Identities=15% Similarity=0.149 Sum_probs=195.7
Q ss_pred CcccHhhhHHHHHHHHhc-c-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCCH--
Q psy7790 69 NISLLDQHSELKKMAEAK-K-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPD-- 142 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~-- 142 (367)
.+..+++++.+.+.+... + ..+++. |+++|+.+++|+|+++++|||+||| |.+|++.. .....+..+..
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~----Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-~g~~lVisP~~~L 96 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPL----QLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-DGFTLVICPLISL 96 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTT----HHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-SSEEEEECSCHHH
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHH----HHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-CCcEEEEeCHHHH
Confidence 456788899999988653 3 777888 9999999999999999999999999 78887653 22233444444
Q ss_pred --HHHHHHHhccCeEE----ecCCCCccc---ccc----cc----CCCCHHHH------HHHHHcCCCCCChhhhhcccc
Q psy7790 143 --QVHDIIRRNLRILV----EGDDVPPAC---CSF----RL----MKLPESLV------RALEAKGIKKPTPIQVQGIPA 199 (367)
Q Consensus 143 --~~~~~~~~~~~i~~----~g~~~~~~~---~~f----~~----l~~p~~ll------~~l~~~g~~~pt~iQ~~~ip~ 199 (367)
++...++.. ++.+ ++....... ..+ .. +.+|+++. +.+.... ....+..-+++.
T Consensus 97 ~~q~~~~l~~~-gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~--~~~~i~~iViDE 173 (591)
T 2v1x_A 97 MEDQLMVLKQL-GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY--EARRFTRIAVDE 173 (591)
T ss_dssp HHHHHHHHHHH-TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH--HTTCEEEEEEET
T ss_pred HHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh--hccCCcEEEEEC
Confidence 444444432 2221 222111000 000 01 46777653 3333210 001111111111
Q ss_pred c---------chHHHHH--HHhhccCCceEEeecCCCcHHHHHHHHHhcCCC--EEEEeCCCCccCCCCcceEEEEEec-
Q psy7790 200 A---------LSEDVRT--IFSFFRGQRQTLLFSATMPKKIQNFARSALVKP--ITINVGRAGKIMPSMNVVQEVEYVK- 265 (367)
Q Consensus 200 ~---------l~~~v~~--Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~--~~i~~~~~~~~~~~~~i~~~~~~~~- 265 (367)
+ |.+++.. ++....++.|+++||||+++.+...+..++..+ ..+... . ...++...+....
T Consensus 174 AH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~----~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 174 VHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-F----NRPNLYYEVRQKPS 248 (591)
T ss_dssp GGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-C----CCTTEEEEEEECCS
T ss_pred cccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-C----CCcccEEEEEeCCC
Confidence 1 2233222 333334578999999999999988888877653 333322 1 2345544444332
Q ss_pred -hhhHHHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc
Q psy7790 266 -QEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS 342 (367)
Q Consensus 266 -~~~k~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~ 342 (367)
...++..|.+++.. .+.++||||+|++.|+.++..|...|+.+..|||+|++.+|..+++.|++|+.+|||||++++
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~ 328 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 24567788888865 346799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCEEEEcCCCCCcccc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|||+|+|++||||++|.+++.|
T Consensus 329 ~GID~p~V~~VI~~~~p~s~~~y 351 (591)
T 2v1x_A 329 MGIDKPDVRFVIHHSMSKSMENY 351 (591)
T ss_dssp TTCCCSCEEEEEESSCCSSHHHH
T ss_pred cCCCcccccEEEEeCCCCCHHHH
Confidence 99999999999999999999887
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=1.2e-31 Score=265.13 Aligned_cols=283 Identities=14% Similarity=0.161 Sum_probs=192.3
Q ss_pred CCcccHhhhHHHHHHHHh-cc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCCH-
Q psy7790 68 SNISLLDQHSELKKMAEA-KK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPD- 142 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~- 142 (367)
..|..|++++.+.+.+.. .+ ..+++. |+++|+.+++|+|+++++|||+||| |..|+... .....+..+..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~----Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-~g~~lvi~P~~a 76 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPG----QEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-NGLTVVVSPLIS 76 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTT----HHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-SSEEEEECSCHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHH----HHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-CCCEEEECChHH
Confidence 358899999999998865 33 677777 9999999999999999999999999 67776643 12233444443
Q ss_pred ---HHHHHHHhccCeEE---ecCCC-Cccccccc-------c--CCCCHHHHHHHHHcCCCCCChhhhhccccc------
Q psy7790 143 ---QVHDIIRRNLRILV---EGDDV-PPACCSFR-------L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA------ 200 (367)
Q Consensus 143 ---~~~~~~~~~~~i~~---~g~~~-~~~~~~f~-------~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~------ 200 (367)
++...++. +++.+ .|... ......+. + +.+|+++........+. ...+..-+++.+
T Consensus 77 L~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~-~~~~~~vViDEaH~i~~~ 154 (523)
T 1oyw_A 77 LMKDQVDQLQA-NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA-HWNPVLLAVDEAHCISQW 154 (523)
T ss_dssp HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT-TSCEEEEEESSGGGGCTT
T ss_pred HHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh-hCCCCEEEEeCccccCcC
Confidence 44444543 22211 22111 11110000 0 35666664210000000 011111111111
Q ss_pred ---chHHHH---HHHhhccCCceEEeecCCCcHHHHHHHHHhc--CCCEEEEeCCCCccCCCCcceEEEEEechhhHHHH
Q psy7790 201 ---LSEDVR---TIFSFFRGQRQTLLFSATMPKKIQNFARSAL--VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272 (367)
Q Consensus 201 ---l~~~v~---~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 272 (367)
+.+++. .+...+ ++.+++++|||+++.+...+...+ .++..+... . ...++. +.......+...
T Consensus 155 g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~----~r~~l~--~~v~~~~~~~~~ 226 (523)
T 1oyw_A 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-F----DRPNIR--YMLMEKFKPLDQ 226 (523)
T ss_dssp SSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC-C----CCTTEE--EEEEECSSHHHH
T ss_pred CCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC-C----CCCceE--EEEEeCCCHHHH
Confidence 222232 233333 358999999999998776554444 455544332 2 123443 334445667788
Q ss_pred HHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCC
Q psy7790 273 LLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIK 351 (367)
Q Consensus 273 l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~ 351 (367)
+.+++.... .++||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|+
T Consensus 227 l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~ 306 (523)
T 1oyw_A 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVR 306 (523)
T ss_dssp HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCC
T ss_pred HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCcc
Confidence 888887754 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcccc
Q psy7790 352 HVINTEAKIKKREH 365 (367)
Q Consensus 352 ~VI~yd~P~~~~~Y 365 (367)
+|||||+|.+++.|
T Consensus 307 ~VI~~~~p~s~~~y 320 (523)
T 1oyw_A 307 FVVHFDIPRNIESY 320 (523)
T ss_dssp EEEESSCCSSHHHH
T ss_pred EEEEECCCCCHHHH
Confidence 99999999999887
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2.8e-30 Score=240.99 Aligned_cols=273 Identities=21% Similarity=0.312 Sum_probs=198.7
Q ss_pred hHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCCHHHHHHHHhc-
Q psy7790 76 HSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDIIRRN- 151 (367)
Q Consensus 76 ~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~~~~~- 151 (367)
++++.+++...+ ..+++. |+++++.+++|++++++++||+||| |..|+... .....+..++...+.++.+.
T Consensus 2 ~~~i~~~l~~~g~~~l~~~----Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-~~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 2 NEKIEQAIREMGFKNFTEV----QSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-GMKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp CHHHHHHHHHTTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHH----HHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-cCCEEEEeCCHHHHHHHHHHH
Confidence 466777776666 777888 9999999999999999999999999 56665543 23344555665444443332
Q ss_pred ------cCe----EEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhccccc-------chHHHHHHHh
Q psy7790 152 ------LRI----LVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPAA-------LSEDVRTIFS 210 (367)
Q Consensus 152 ------~~i----~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-------l~~~v~~Il~ 210 (367)
..+ ..+|.........+.. +++|+.+.+.+....+ ....+..-+++.+ +...+..++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 155 (337)
T 2z0m_A 77 RDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVI-DLSSFEIVIIDEADLMFEMGFIDDIKIILA 155 (337)
T ss_dssp HHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSC-CGGGCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCc-chhhCcEEEEEChHHhhccccHHHHHHHHh
Confidence 112 2233322222222222 6799999988765322 2222222222221 2266777888
Q ss_pred hccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh-hcCCCeEEeec
Q psy7790 211 FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ-KTEPPVLIFAE 289 (367)
Q Consensus 211 ~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-~~~~~~iVF~~ 289 (367)
.++..++++++|||++..+......++.++..+.... ...++.+.+..+....+. ....+. ..+.++||||+
T Consensus 156 ~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~ 228 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACI-----GLANVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVR 228 (337)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG-----GGGGEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECS
T ss_pred hCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc-----ccCCceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEc
Confidence 8888999999999999999999999998887764431 344666777666554332 224444 34567999999
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+++.++.++..|. .+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|
T Consensus 229 ~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 300 (337)
T 2z0m_A 229 TRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTY 300 (337)
T ss_dssp CHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHH
T ss_pred CHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHh
Confidence 9999999999886 68899999999999999999999999999999999999999999999999999998776
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=2.3e-30 Score=249.16 Aligned_cols=257 Identities=17% Similarity=0.143 Sum_probs=179.5
Q ss_pred ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc--cCCccccCCCHHHHHH----HHhc--cC---
Q psy7790 87 KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW--RAPRCILSLPDQVHDI----IRRN--LR--- 153 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~--~~~~~i~~~~~~~~~~----~~~~--~~--- 153 (367)
+..|+++ |.++++.+++|+|++++||||+||| |..|+.... .+...+..++.+.+.+ ++.- .+
T Consensus 19 ~~~~~~~----Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v 94 (414)
T 3oiy_A 19 GKDLTGY----QRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 94 (414)
T ss_dssp SSCCCHH----HHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCE
T ss_pred CCCCCHH----HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceE
Confidence 4678888 9999999999999999999999999 555655432 2233455566554444 3331 11
Q ss_pred -eEEecCCC---Cccccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhcccc------------------cchHH-
Q psy7790 154 -ILVEGDDV---PPACCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPA------------------ALSED- 204 (367)
Q Consensus 154 -i~~~g~~~---~~~~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~------------------~l~~~- 204 (367)
...||.+. ..+...+. + +++|+++.+.+....... +..-+++. .+.++
T Consensus 95 ~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~---~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~ 171 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKR---FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 171 (414)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCC---CSEEEESCHHHHHHCHHHHHHHHHHTTCCHHH
T ss_pred EEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccc---ccEEEEeChHhhhhccchhhhHHhhcCCcHHH
Confidence 12233332 11112221 1 689999988876533222 22222222 23344
Q ss_pred HHHHHhhcc-----------CCceEEeecCC-CcHHHH-HHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHH
Q psy7790 205 VRTIFSFFR-----------GQRQTLLFSAT-MPKKIQ-NFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271 (367)
Q Consensus 205 v~~Il~~l~-----------~~~Q~il~SAT-~~~~v~-~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 271 (367)
+..++..++ ..+|+++|||| .|..+. .+...++. +.+..... ...++.+.+..++ +..
T Consensus 172 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~i~~~~~~~~---~~~ 242 (414)
T 3oiy_A 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVS--VARNITHVRISSR---SKE 242 (414)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCC--CCCSEEEEEESSC---CHH
T ss_pred HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccc--ccccchheeeccC---HHH
Confidence 778888877 88999999999 565544 23333332 22222222 4557777777664 455
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEE-EEecCCCHHHHHHHHHHHhcCCCcEEEe----cccccccCC
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAV-AIHGGKDQEERTRSVESFRKGQKDVMVA----TDVASKGLD 346 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLVa----Td~~~rGlD 346 (367)
.|..++...+.++||||+++..|+.++..|...|+.+. .+||. +|. ++.|++|+++|||| |+++++|+|
T Consensus 243 ~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiD 316 (414)
T 3oiy_A 243 KLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVD 316 (414)
T ss_dssp HHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCC
T ss_pred HHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCc
Confidence 56666666778999999999999999999999999998 99985 444 99999999999999 999999999
Q ss_pred cCC-CCEEEEcCCC--CCcccc
Q psy7790 347 FEE-IKHVINTEAK--IKKREH 365 (367)
Q Consensus 347 i~~-v~~VI~yd~P--~~~~~Y 365 (367)
+|+ |++|||||+| .++..|
T Consensus 317 ip~~v~~VI~~~~p~~~~~~~y 338 (414)
T 3oiy_A 317 LPERIKYVIFWGTPSGPDVYTY 338 (414)
T ss_dssp CTTTCCEEEEESCCTTTCHHHH
T ss_pred cccccCEEEEECCCCCCCHHHH
Confidence 999 9999999999 888877
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.4e-30 Score=254.24 Aligned_cols=289 Identities=16% Similarity=0.229 Sum_probs=181.7
Q ss_pred cccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc--ccccccccccCCcc--ccCccccccc-----CCccccC
Q psy7790 70 ISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET--KALMGVAELAKGIQ--YNDPIKTSWR-----APRCILS 139 (367)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g--~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i~~ 139 (367)
++..++.+.+.+.+...+ ..+++. |+++++.+++| ++++++++||+||| |..|+...+. +...+..
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~----Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKI----QEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLA 196 (508)
T ss_dssp ------------------CEECCCT----TSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEEC
T ss_pred ccccccccccccccccccccCcHHH----HHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 445556667777665444 567777 99999999998 99999999999999 5666665432 2334566
Q ss_pred CCHHHHHHHHhc----c---Ce--E--EecCCCCccccccc-cCCCCHHHHHHHHHcCCCCCChhhhhccc--------c
Q psy7790 140 LPDQVHDIIRRN----L---RI--L--VEGDDVPPACCSFR-LMKLPESLVRALEAKGIKKPTPIQVQGIP--------A 199 (367)
Q Consensus 140 ~~~~~~~~~~~~----~---~i--~--~~g~~~~~~~~~f~-~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip--------~ 199 (367)
++...+.++.+. . .+ . .++........... -+++|+.+.+.+....+. +..+..-+++ .
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~-~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLD-ARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSC-CTTCCEEEECCHHHHTTC-
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCcc-ccCCCEEEEechhhhcccC
Confidence 666555544432 1 11 1 11111111000000 168999999988765432 2222221221 1
Q ss_pred cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec-hhhHHHHHHHHHh
Q psy7790 200 ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK-QEAKIVYLLECLQ 278 (367)
Q Consensus 200 ~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~ 278 (367)
.+...+..++..++.+.|++++|||++..+..+...++.++..+....... ....+.+.+..+. ...+...+..++.
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL--SVEGIKQLYMDCQSEEHKYNVLVELYG 353 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------CCCCEEEEC--CHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC--CcccceEEEEECCchHHHHHHHHHHHH
Confidence 233567778888888999999999999999999999999998887765544 4556666666664 4567777777776
Q ss_pred hc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcC
Q psy7790 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357 (367)
Q Consensus 279 ~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd 357 (367)
.. .+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||
T Consensus 354 ~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 354 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp ---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 54 46899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CCcccc
Q psy7790 358 AK------IKKREH 365 (367)
Q Consensus 358 ~P------~~~~~Y 365 (367)
+| .++..|
T Consensus 434 ~p~~~~~~~s~~~~ 447 (508)
T 3fho_A 434 MPLDQAGRPDPQTY 447 (508)
T ss_dssp --CC-----CTHHH
T ss_pred CCCcccCCCCHHHH
Confidence 99 566554
No 19
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=2.5e-29 Score=266.36 Aligned_cols=252 Identities=17% Similarity=0.142 Sum_probs=179.1
Q ss_pred ccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc--cCCccccCCCHHHHHHH----Hh------cc
Q psy7790 87 KESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW--RAPRCILSLPDQVHDII----RR------NL 152 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~--~~~~~i~~~~~~~~~~~----~~------~~ 152 (367)
+-.|+++ |+++|+.++.|+|++++|+|||||| |..|+...+ .+...+..++.+++.++ ++ ..
T Consensus 76 gf~pt~i----Q~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v 151 (1104)
T 4ddu_A 76 GKDLTGY----QRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 151 (1104)
T ss_dssp SSCCCHH----HHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCE
T ss_pred CCCCCHH----HHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeE
Confidence 4578888 9999999999999999999999999 445544433 22344556666555444 43 12
Q ss_pred CeEEecCCC---Ccccccccc------CCCCHHHHHHHHHcCCCCCChhhhhcccc------------------cchHH-
Q psy7790 153 RILVEGDDV---PPACCSFRL------MKLPESLVRALEAKGIKKPTPIQVQGIPA------------------ALSED- 204 (367)
Q Consensus 153 ~i~~~g~~~---~~~~~~f~~------l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~------------------~l~~~- 204 (367)
...+||.+. ..+...+.. ++||+++++++....+. .+..-+++. .+..+
T Consensus 152 ~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~---~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQK---RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTS---CCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhccc---CcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 223455544 122222221 68999998876642221 122222222 23345
Q ss_pred HHHHHhhcc-----------CCceEEeecCC-CcHHHHH-HHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHH
Q psy7790 205 VRTIFSFFR-----------GQRQTLLFSAT-MPKKIQN-FARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271 (367)
Q Consensus 205 v~~Il~~l~-----------~~~Q~il~SAT-~~~~v~~-l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 271 (367)
+..+++.++ .++|+++|||| .|..+.. +....+. +.+..... ...++.+.+..++ +..
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~--~~~~i~~~~~~~~---k~~ 299 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVS--VARNITHVRISSR---SKE 299 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCC--CCCCEEEEEESCC---CHH
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCC--CcCCceeEEEecC---HHH
Confidence 788888887 88999999999 5655442 3333333 33333333 5667888887774 555
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEE-EEecCCCHHHHHHHHHHHhcCCCcEEEe----cccccccCC
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAV-AIHGGKDQEERTRSVESFRKGQKDVMVA----TDVASKGLD 346 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLVa----Td~~~rGlD 346 (367)
.|..++...++++||||+|+..|+.++..|...|+.+. .+||. |.+ ++.|++|+.+|||| |++++||||
T Consensus 300 ~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGID 373 (1104)
T 4ddu_A 300 KLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVD 373 (1104)
T ss_dssp HHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCC
T ss_pred HHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCc
Confidence 66677776778999999999999999999999999998 99992 555 99999999999999 999999999
Q ss_pred cCC-CCEEEEcCCCC
Q psy7790 347 FEE-IKHVINTEAKI 360 (367)
Q Consensus 347 i~~-v~~VI~yd~P~ 360 (367)
+|+ |++|||||+|.
T Consensus 374 ip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 374 LPERIKYVIFWGTPS 388 (1104)
T ss_dssp CTTTCCEEEEESCCE
T ss_pred CCCCCCEEEEECCCC
Confidence 999 99999999998
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-29 Score=263.55 Aligned_cols=284 Identities=13% Similarity=0.094 Sum_probs=188.3
Q ss_pred cccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC--CccccCCC---
Q psy7790 70 ISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA--PRCILSLP--- 141 (367)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~--~~~i~~~~--- 141 (367)
|..+.+.+.+...+...+ ..+++. |.++|+.++.|+|++++|+|||||| |..|+...+.. ...+..++
T Consensus 164 ~~~~~l~~~~~~~~~~~~~f~ltp~----Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraL 239 (1108)
T 3l9o_A 164 YDYTPIAEHKRVNEARTYPFTLDPF----QDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKAL 239 (1108)
T ss_dssp CCSSTTTTTCCCSCSSCCSSCCCHH----HHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred cccCCCChhhhHHHHHhCCCCCCHH----HHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence 444444444433332222 456777 9999999999999999999999999 66777665432 22334444
Q ss_pred -HHHHHHHHhc---cCeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhccccc-------chHHHHHHHh
Q psy7790 142 -DQVHDIIRRN---LRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA-------LSEDVRTIFS 210 (367)
Q Consensus 142 -~~~~~~~~~~---~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-------l~~~v~~Il~ 210 (367)
.+.+..++.. .++..|+..+..... --++||+++.+.+..... ....+..-+++.+ +...+..++.
T Consensus 240 a~Q~~~~l~~~~~~VglltGd~~~~~~~~--IlV~Tpe~L~~~L~~~~~-~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 240 SNQKYRELLAEFGDVGLMTGDITINPDAG--CLVMTTEILRSMLYRGSE-VMREVAWVIFDEVHYMRDKERGVVWEETII 316 (1108)
T ss_dssp HHHHHHHHHHHTSSEEEECSSCBCCCSCS--EEEEEHHHHHHHHHHCSS-HHHHEEEEEEETGGGTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccEEeCccccCCCCC--EEEeChHHHHHHHHcCcc-ccccCCEEEEhhhhhccccchHHHHHHHHH
Confidence 4455555553 344455554432211 126899999998875422 1111222222211 2255788888
Q ss_pred hccCCceEEeecCCCcHH--HHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEE---------ech-------------
Q psy7790 211 FFRGQRQTLLFSATMPKK--IQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY---------VKQ------------- 266 (367)
Q Consensus 211 ~l~~~~Q~il~SAT~~~~--v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~---------~~~------------- 266 (367)
.++..+|+++||||+|.. +..++.....++..+....... ..+.+++.. ++.
T Consensus 317 ~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~ 392 (1108)
T 3l9o_A 317 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 392 (1108)
T ss_dssp HSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS----SCEEEEEEETTSSCCEEEEETTTEECHHHHHHHH
T ss_pred hcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEeecCCcceeeeeccccchhhhhHHHHH
Confidence 999999999999999764 4566666666766655543322 112222211 100
Q ss_pred ---------------------------------hhHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCe-----
Q psy7790 267 ---------------------------------EAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVE----- 307 (367)
Q Consensus 267 ---------------------------------~~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~----- 307 (367)
..++..++..+...+ .++||||+|+..|+.++..|...++.
T Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~ 472 (1108)
T 3l9o_A 393 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 472 (1108)
T ss_dssp TTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC---
T ss_pred HHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHH
Confidence 233444555555544 58999999999999999998653332
Q ss_pred ----------------------------------EEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE
Q psy7790 308 ----------------------------------AVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV 353 (367)
Q Consensus 308 ----------------------------------~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V 353 (367)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 473 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~V 552 (1108)
T 3l9o_A 473 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 552 (1108)
T ss_dssp -CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEE
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEE
Confidence 7999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCccc
Q psy7790 354 INTEAKIKKRE 364 (367)
Q Consensus 354 I~yd~P~~~~~ 364 (367)
|||+.|.+...
T Consensus 553 I~~~~~~d~~~ 563 (1108)
T 3l9o_A 553 FTSVRKWDGQQ 563 (1108)
T ss_dssp ESCSEEESSSC
T ss_pred EecCcccCccc
Confidence 99998876653
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.95 E-value=1.8e-28 Score=246.95 Aligned_cols=272 Identities=15% Similarity=0.149 Sum_probs=183.4
Q ss_pred cccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccc-c-cCCccccCCCHHHHHHHHhc-------cC-
Q psy7790 86 KKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTS-W-RAPRCILSLPDQVHDIIRRN-------LR- 153 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~-~-~~~~~i~~~~~~~~~~~~~~-------~~- 153 (367)
.+-.|+++ |..+++.+++|+ ++.++||+||| |++|+..+ + .+...|..++++++.+.... ++
T Consensus 80 lG~~pt~V----Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl 153 (844)
T 1tf5_A 80 TGMFPFKV----QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGL 153 (844)
T ss_dssp HSCCCCHH----HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCcHH----HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 34589999 999999999999 99999999999 88887632 3 23455677777766655442 23
Q ss_pred ---eEEecCCCCccccccc---cCCCCHHH-HHHHHHcC-C----CCCChhhhhcccc-------------c--------
Q psy7790 154 ---ILVEGDDVPPACCSFR---LMKLPESL-VRALEAKG-I----KKPTPIQVQGIPA-------------A-------- 200 (367)
Q Consensus 154 ---i~~~g~~~~~~~~~f~---~l~~p~~l-l~~l~~~g-~----~~pt~iQ~~~ip~-------------~-------- 200 (367)
+.+||.+......... -+|||+++ .+.|...- + .....+...+++. +
T Consensus 154 ~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~ 233 (844)
T 1tf5_A 154 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKS 233 (844)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECC
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccc
Confidence 3345543211111111 17899999 77776531 1 1112222222211 1
Q ss_pred --chHHHHHHHhhcc---------CCceEE-----------------eecCCCcHH---HHHH--HHHhcC-CCEEE---
Q psy7790 201 --LSEDVRTIFSFFR---------GQRQTL-----------------LFSATMPKK---IQNF--ARSALV-KPITI--- 243 (367)
Q Consensus 201 --l~~~v~~Il~~l~---------~~~Q~i-----------------l~SAT~~~~---v~~l--~~~~l~-~~~~i--- 243 (367)
+..++..|+..++ ..+|++ +||||++.. +... +..++. +...+
T Consensus 234 ~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~d 313 (844)
T 1tf5_A 234 TKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVED 313 (844)
T ss_dssp CHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEET
T ss_pred hhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEec
Confidence 2256788888886 478998 999998754 3333 222332 21111
Q ss_pred ----EeCC-CCcc-------------------------------------------------------------------
Q psy7790 244 ----NVGR-AGKI------------------------------------------------------------------- 251 (367)
Q Consensus 244 ----~~~~-~~~~------------------------------------------------------------------- 251 (367)
.++. .+.+
T Consensus 314 g~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv 393 (844)
T 1tf5_A 314 GQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVV 393 (844)
T ss_dssp TEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEE
T ss_pred CeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceE
Confidence 1110 0000
Q ss_pred --CCC-Ccce---EEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHH
Q psy7790 252 --MPS-MNVV---QEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 252 --~~~-~~i~---~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 322 (367)
.++ +.++ +.++++....|...|...+.. .+.++||||+|++.++.|+..|...|+++.++||++.+.+|..
T Consensus 394 ~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~i 473 (844)
T 1tf5_A 394 TIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQI 473 (844)
T ss_dssp ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHH
T ss_pred EecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHH
Confidence 000 0000 125566778899999888764 3568999999999999999999999999999999999888877
Q ss_pred HHHHHhcCCCcEEEecccccccCCcC--------CCCEEEEcCCCCCcccc
Q psy7790 323 SVESFRKGQKDVMVATDVASKGLDFE--------EIKHVINTEAKIKKREH 365 (367)
Q Consensus 323 ~~~~F~~g~~~vLVaTd~~~rGlDi~--------~v~~VI~yd~P~~~~~Y 365 (367)
+.+.|+.| .|+||||+|+||+||+ ++.||||||+|.+.+.|
T Consensus 474 i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y 522 (844)
T 1tf5_A 474 IEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRID 522 (844)
T ss_dssp HTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHH
T ss_pred HHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHH
Confidence 76666665 6999999999999999 88899999999999877
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=4.8e-28 Score=241.07 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhh-----cCCCeEEeeccHHHHHHHHHHHHhC------------CCeEEEEecCCCHHHHHHHHHHHhc-
Q psy7790 268 AKIVYLLECLQK-----TEPPVLIFAEKKQDVDAIHEYLLLK------------GVEAVAIHGGKDQEERTRSVESFRK- 329 (367)
Q Consensus 268 ~k~~~l~~~l~~-----~~~~~iVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~~- 329 (367)
.|+..|.++|.. .+.++||||+++..++.++..|... |..+..+||+|++.+|..++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 466666777653 3578999999999999999999775 5666777889999999999999999
Q ss_pred CCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 330 GQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 330 g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+++|||||+++++|||+|+|++|||||+|+|+..|
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~ 487 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKM 487 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHH
Confidence 999999999999999999999999999999999877
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.94 E-value=2.7e-28 Score=249.70 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHhhc-----CCCeEEeeccHHHHHHHHHHHHhCC----CeEEEE--------ecCCCHHHHHHHHHHHhc
Q psy7790 267 EAKIVYLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLKG----VEAVAI--------HGGKDQEERTRSVESFRK 329 (367)
Q Consensus 267 ~~k~~~l~~~l~~~-----~~~~iVF~~s~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~R~~~~~~F~~ 329 (367)
..|+..|.+++... +.++||||+++..++.++..|...| +++..+ ||+|++.+|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777654 4689999999999999999999988 899999 559999999999999998
Q ss_pred -CCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 330 -GQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 330 -g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+.+|||||+++++|||+|+|++|||||+|.+++.|
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~ 495 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 495 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHH
Confidence 999999999999999999999999999999999887
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.94 E-value=2.7e-27 Score=235.40 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhh-----cCCCeEEeeccHHHHHHHHHHHHhCC------------CeEEEEecCCCHHHHHHHHHHHhc-
Q psy7790 268 AKIVYLLECLQK-----TEPPVLIFAEKKQDVDAIHEYLLLKG------------VEAVAIHGGKDQEERTRSVESFRK- 329 (367)
Q Consensus 268 ~k~~~l~~~l~~-----~~~~~iVF~~s~~~~~~l~~~L~~~~------------~~~~~lhg~~~~~~R~~~~~~F~~- 329 (367)
.|+..|.++|.. .+.++||||+++..++.++..|...+ .....+||+|++.+|..++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 456666666654 24789999999999999999998763 355556679999999999999999
Q ss_pred CCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 330 GQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 330 g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+++|||||+++++|||+|+|++|||||+|+|+..|
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~ 486 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKM 486 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCE
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHH
Confidence 999999999999999999999999999999999987
No 25
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=2.3e-28 Score=258.79 Aligned_cols=252 Identities=13% Similarity=0.150 Sum_probs=174.0
Q ss_pred cccChHHHhHHHHHHHHHHhHhcccccccccccCCcc-ccCccccccc---CCccccCCCHHHHHHHHhc-------cCe
Q psy7790 86 KKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ-YNDPIKTSWR---APRCILSLPDQVHDIIRRN-------LRI 154 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT-~~~p~~~~~~---~~~~i~~~~~~~~~~~~~~-------~~i 154 (367)
.+-.| ++ |.++|+.+++|+|++++|+|||||| |.+|+...+. +...+..++.+++.++.+. +++
T Consensus 54 ~g~~p-~i----Q~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 54 VGEPR-AI----QKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp TCSCC-HH----HHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCH-HH----HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 34337 77 9999999999999999999999999 7777765432 3344566666555444332 222
Q ss_pred --------EEecCCCCcc---ccccc--c--CCCCHHHHHHHHHcCCCCCChhhhhccccc-----chHHHHHHHhhc--
Q psy7790 155 --------LVEGDDVPPA---CCSFR--L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA-----LSEDVRTIFSFF-- 212 (367)
Q Consensus 155 --------~~~g~~~~~~---~~~f~--~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-----l~~~v~~Il~~l-- 212 (367)
.+||.+...+ ...+. + ++||+++++.+.. + ..+..-+++.+ +..+++.++..+
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~--L---~~l~~lViDEah~~l~~~~~~~~i~~~lgf 203 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE--L---GHFDFIFVDDVDAILKASKNVDKLLHLLGF 203 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT--S---CCCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH--h---ccCCEEEEeChhhhhhccccHHHHHHHhCc
Confidence 2355444331 12222 1 6899999987664 1 12222222221 114555555555
Q ss_pred ---------cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCC
Q psy7790 213 ---------RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPP 283 (367)
Q Consensus 213 ---------~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 283 (367)
+..+|+++||||++.. ..++..++.++..+.+..... ...++.+.+. ...+...|..++...+++
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~--~~~~i~~~~~---~~~k~~~L~~ll~~~~~~ 277 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRI--TVRNVEDVAV---NDESISTLSSILEKLGTG 277 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEE--CCCCEEEEEE---SCCCTTTTHHHHTTSCSC
T ss_pred chhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCccc--CcCCceEEEe---chhHHHHHHHHHhhcCCC
Confidence 4568999999999987 544445554444444443333 4556766665 356667778888887889
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEe----cccccccCCcCCC-CEEEEcCC
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA----TDVASKGLDFEEI-KHVINTEA 358 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa----Td~~~rGlDi~~v-~~VI~yd~ 358 (367)
+||||+|+..|+.++..|... +++..+||+|. .+++.|++|+.+|||| |++++||||+|+| ++|||||+
T Consensus 278 ~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~ 351 (1054)
T 1gku_B 278 GIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGC 351 (1054)
T ss_dssp EEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESC
T ss_pred EEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCC
Confidence 999999999999999999888 99999999983 7899999999999999 9999999999996 99999999
Q ss_pred C
Q psy7790 359 K 359 (367)
Q Consensus 359 P 359 (367)
|
T Consensus 352 P 352 (1054)
T 1gku_B 352 P 352 (1054)
T ss_dssp C
T ss_pred C
Confidence 9
No 26
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.93 E-value=2.3e-29 Score=252.37 Aligned_cols=258 Identities=11% Similarity=0.079 Sum_probs=169.7
Q ss_pred HhhhHHHHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc---CCccccCCCHHHHHH
Q psy7790 73 LDQHSELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR---APRCILSLPDQVHDI 147 (367)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~---~~~~i~~~~~~~~~~ 147 (367)
+..++.+.+++......++|+ |+..++.+++|+|++++|+|||||| |..|++..+. +...+.+++++++.+
T Consensus 155 l~~~~~~~~~l~~~~~~~lpi----q~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Q 230 (618)
T 2whx_A 155 VTKSGDYVSAITQAERIGEPD----YEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAE 230 (618)
T ss_dssp -------CEECBCCCCCCCCC----CCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH
T ss_pred ccchHHHHHHHhhccccCCCc----cccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHH
Confidence 555555555443323666777 4446999999999999999999999 6678776542 245577888888888
Q ss_pred HHhccC-eEEecCCCCccccccccCCCCHH---------HHHHHHHcCCCCCChhhhhcccc------cchHHHHHHHhh
Q psy7790 148 IRRNLR-ILVEGDDVPPACCSFRLMKLPES---------LVRALEAKGIKKPTPIQVQGIPA------ALSEDVRTIFSF 211 (367)
Q Consensus 148 ~~~~~~-i~~~g~~~~~~~~~f~~l~~p~~---------ll~~l~~~g~~~pt~iQ~~~ip~------~l~~~v~~Il~~ 211 (367)
+.+.+. ..++ .+...+...++|++ +...+.... ....+..-+++. .+...+..|+..
T Consensus 231 i~~~l~~~~v~-----~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~--~l~~~~~iViDEah~~~~~~~~~~~~i~~~ 303 (618)
T 2whx_A 231 MEEALRGLPIR-----YQTPAVKSDHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEAHFTDPCSVAARGYISTR 303 (618)
T ss_dssp HHHHTTTSCEE-----ECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCS--SCCCCSEEEEESTTCCSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcee-----EecccceeccCCCceEEEEChHHHHHHHhccc--cccCCeEEEEECCCCCCccHHHHHHHHHHH
Confidence 877652 2221 11122222334433 333333221 112222222222 233567777777
Q ss_pred cc-CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeecc
Q psy7790 212 FR-GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEK 290 (367)
Q Consensus 212 l~-~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s 290 (367)
++ .++|+++||||++..+..++. .++..+.+..... ..+...++..+....+++||||+|
T Consensus 304 l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~----------------~~~~~~ll~~l~~~~~~~LVF~~s 364 (618)
T 2whx_A 304 VEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP----------------ERSWNTGFDWITDYQGKTVWFVPS 364 (618)
T ss_dssp HHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC----------------SSCCSSSCHHHHHCCSCEEEECSS
T ss_pred hcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC----------------HHHHHHHHHHHHhCCCCEEEEECC
Confidence 75 789999999999877543322 2333333322110 011123344555567899999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEE-----------------
Q psy7790 291 KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHV----------------- 353 (367)
Q Consensus 291 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~V----------------- 353 (367)
++.|+.++..|...++++..+||. +|.++++.|++|+.+||||||+++||||+| |++|
T Consensus 365 ~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~ 439 (618)
T 2whx_A 365 IKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPE 439 (618)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSC
T ss_pred hhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCC
Confidence 999999999999999999999985 788899999999999999999999999997 9998
Q ss_pred ---EEcCCCCCcccc
Q psy7790 354 ---INTEAKIKKREH 365 (367)
Q Consensus 354 ---I~yd~P~~~~~Y 365 (367)
|||++|.+.++|
T Consensus 440 ~~~i~~d~P~s~~~y 454 (618)
T 2whx_A 440 RVILAGPIPVTPASA 454 (618)
T ss_dssp EEEEEEEEECCHHHH
T ss_pred ceEEcccccCCHHHH
Confidence 777778887776
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=2.4e-26 Score=238.37 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhh-----cCCCeEEeeccHHHHHHHHHHHHhC------------CCeEEEEecCCCHHHHHHHHHHHhc-
Q psy7790 268 AKIVYLLECLQK-----TEPPVLIFAEKKQDVDAIHEYLLLK------------GVEAVAIHGGKDQEERTRSVESFRK- 329 (367)
Q Consensus 268 ~k~~~l~~~l~~-----~~~~~iVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~~- 329 (367)
.|+..|.++|.. .+.++||||+++..++.++.+|... |..+..+||+|++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 356666666653 3478999999999999999999763 6677788999999999999999999
Q ss_pred CCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 330 GQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 330 g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+++|||||+++++|||+|+|++|||||+|+|+..|
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~ 728 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKM 728 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHH
Confidence 999999999999999999999999999999999876
No 28
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=1.9e-26 Score=231.79 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=92.5
Q ss_pred EEEechhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEe
Q psy7790 261 VEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa 337 (367)
++++....|...|...+.. .+.++||||+|++.++.|+..|...|+++.++||++.+.+|..+.++|+.| .|+||
T Consensus 418 ~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIA 495 (853)
T 2fsf_A 418 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIA 495 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEe
Confidence 4667788999999988854 346799999999999999999999999999999999999998888999988 69999
Q ss_pred cccccccCCcCCC-------------------------------------CEEEEcCCCCCcccc
Q psy7790 338 TDVASKGLDFEEI-------------------------------------KHVINTEAKIKKREH 365 (367)
Q Consensus 338 Td~~~rGlDi~~v-------------------------------------~~VI~yd~P~~~~~Y 365 (367)
||+|+||+||+.. .|||||++|.|...|
T Consensus 496 TnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy 560 (853)
T 2fsf_A 496 TNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRID 560 (853)
T ss_dssp ESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHH
T ss_pred cccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHH
Confidence 9999999999974 599999999998876
No 29
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=5.8e-25 Score=225.62 Aligned_cols=282 Identities=16% Similarity=0.153 Sum_probs=183.0
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHH-hHhcccccccccccCCcc--ccCccccccc---CCccccC
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRS-VAETKALMGVAELAKGIQ--YNDPIKTSWR---APRCILS 139 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~-i~~g~d~~~~a~TgsGKT--~~~p~~~~~~---~~~~i~~ 139 (367)
..+|+++++++.+.+.+...+ ..+++. |.++++. +.+|++++++|||||||| +..++...+. ....+..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~----Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~ 82 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPP----QTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVT 82 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHH----HHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHH----HHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 356999999999999987666 677888 9999999 789999999999999999 5556554432 1222344
Q ss_pred CCH----HHHHHHHh--ccCeEE----ecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccc------
Q psy7790 140 LPD----QVHDIIRR--NLRILV----EGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPA------ 199 (367)
Q Consensus 140 ~~~----~~~~~~~~--~~~i~~----~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~------ 199 (367)
+.+ +.+..++. .+++.+ |+...... .+.. +.||+.+...+.... .....+..-+++.
T Consensus 83 P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~ 159 (715)
T 2va8_A 83 PLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WLKNYDIIITTYEKLDSLWRHRP-EWLNEVNYFVLDELHYLND 159 (715)
T ss_dssp SCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GGGGCSEEEECHHHHHHHHHHCC-GGGGGEEEEEECSGGGGGC
T ss_pred CcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hcCCCCEEEEcHHHHHHHHhCCh-hHhhccCEEEEechhhcCC
Confidence 444 44444421 122322 32222111 1112 679999988877531 1011111111111
Q ss_pred -cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceE------------EEEEec-
Q psy7790 200 -ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQ------------EVEYVK- 265 (367)
Q Consensus 200 -~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~------------~~~~~~- 265 (367)
.+...++.++..++ +.|++++|||++. ...++. ++..+. +.... . +. .+.. .+.+.+
T Consensus 160 ~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~--r--~~-~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 160 PERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VATNW--R--PV-PLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp TTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EECCC--C--SS-CEEEEEEEECSSTTEEEEEETTS
T ss_pred cccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCCCC--C--CC-CceEEEEecCCcccceeeecCcc
Confidence 12245666777776 7999999999974 344443 444322 11111 1 00 1111 111111
Q ss_pred -------hhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCC---------------------------------
Q psy7790 266 -------QEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG--------------------------------- 305 (367)
Q Consensus 266 -------~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~--------------------------------- 305 (367)
...+...+.+.+. .++++||||++++.++.++..|....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp CEEEEESSSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 1344455555553 56789999999999999999997642
Q ss_pred ---CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE----cC-------CCCCcccc
Q psy7790 306 ---VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN----TE-------AKIKKREH 365 (367)
Q Consensus 306 ---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----yd-------~P~~~~~Y 365 (367)
..+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.+..+|
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 24899999999999999999999999999999999999999999999999 99 78777665
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.93 E-value=7e-27 Score=239.34 Aligned_cols=85 Identities=27% Similarity=0.442 Sum_probs=76.6
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC------CCeEEEEecC--------CCHHHHHHHHHHHhcCCCcEEEecccccccCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK------GVEAVAIHGG--------KDQEERTRSVESFRKGQKDVMVATDVASKGLD 346 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD 346 (367)
+.++||||+++..++.++..|... |+++..+||+ |++.+|..++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 678999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCCCEEEEcCCCCCcccc
Q psy7790 347 FEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 347 i~~v~~VI~yd~P~~~~~Y 365 (367)
+|+|++|||||+|.|+..|
T Consensus 480 ip~v~~VI~~d~p~s~~~~ 498 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAM 498 (699)
T ss_dssp CCSCCCCEEESCCCCHHHH
T ss_pred cccCCEEEEeCCCCCHHHH
Confidence 9999999999999999876
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=7.7e-26 Score=232.20 Aligned_cols=281 Identities=17% Similarity=0.174 Sum_probs=187.3
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHH-hHhcccccccccccCCcc--ccCccccccc---CCccc----
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRS-VAETKALMGVAELAKGIQ--YNDPIKTSWR---APRCI---- 137 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~-i~~g~d~~~~a~TgsGKT--~~~p~~~~~~---~~~~i---- 137 (367)
+|+++++++.+.+.+...+ ..+++. |.++++. +.+|++++++|||||||| |..|+...+. ....+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~----Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~ 77 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPP----QAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPL 77 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHH----HHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 5888999999999987666 677888 9999998 889999999999999999 5556654432 11222
Q ss_pred cCCCHHHHHHHHh--ccCeE----EecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhccccc-------
Q psy7790 138 LSLPDQVHDIIRR--NLRIL----VEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPAA------- 200 (367)
Q Consensus 138 ~~~~~~~~~~~~~--~~~i~----~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~------- 200 (367)
+++..+.+..+++ .+++. +|+.... ...+.. ++||+.+...+... ......+..-+++.+
T Consensus 78 raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~--~~~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEKIGLRVAMATGDYDSK--DEWLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp GGGHHHHHHHTGGGGGGTCCEEEECSCSSCC--CGGGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTT
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEecCCCCcc--ccccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccCCCc
Confidence 3444556666642 12222 2332221 111222 67999998877652 211122222222222
Q ss_pred chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEE------EEec-----hhhH
Q psy7790 201 LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV------EYVK-----QEAK 269 (367)
Q Consensus 201 l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~------~~~~-----~~~k 269 (367)
....+..++..++.+.|++++|||++. ...++ .++..+. +.... . +. .+...+ .+.. ...+
T Consensus 155 r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~~--r--p~-~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 155 RGATLEVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAEL-IVSDW--R--PV-KLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp THHHHHHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEEE-EECCC--C--SS-EEEEEEEETTEEEETTSCEEECSST
T ss_pred ccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCcc-cCCCC--C--CC-cceEEEEeCCeeeccccchhhhhHH
Confidence 225677788888778999999999975 34444 3444222 11111 1 11 111111 1111 2233
Q ss_pred HHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC------------------C---------------CeEEEEecCCC
Q psy7790 270 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK------------------G---------------VEAVAIHGGKD 316 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~------------------~---------------~~~~~lhg~~~ 316 (367)
...+.+.+. .++++||||+|++.|+.++..|... + ..+..+||+|+
T Consensus 227 ~~~~~~~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 227 EELVYDAIR-KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp THHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHHh-CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 444444443 4678999999999999999999653 1 24999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE----cC----CCCCcccc
Q psy7790 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN----TE----AKIKKREH 365 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----yd----~P~~~~~Y 365 (367)
+.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.++.+|
T Consensus 306 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~ 362 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEV 362 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHH
Confidence 999999999999999999999999999999999999999 77 57776654
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=1e-25 Score=236.50 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhhc-----CCCeEEeeccHHHHHHHHHHHHhC------------CCeEEEEecCCCHHHHHHHHHHHhc-
Q psy7790 268 AKIVYLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLK------------GVEAVAIHGGKDQEERTRSVESFRK- 329 (367)
Q Consensus 268 ~k~~~l~~~l~~~-----~~~~iVF~~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~~- 329 (367)
.|+..|.++|... +.++||||+++..++.|+.+|... |..+..+||+|++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555566666542 468999999999999999999876 6667778999999999999999999
Q ss_pred CCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 330 GQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 330 g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+++|||||+++++|||+|+|++|||||+|+|+..|
T Consensus 693 g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~ 728 (936)
T 4a2w_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKM 728 (936)
T ss_dssp -CCSEEEEECC------CCCCSEEEEESCCSCSHHH
T ss_pred CCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHH
Confidence 999999999999999999999999999999999876
No 33
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.93 E-value=8e-26 Score=232.12 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=182.7
Q ss_pred ccccCCcccHhhhHHHHHHHHhcccChHHHhHHHHHHHHHHhH-hcccccccccccCCccccCccccc---cc---CC-c
Q psy7790 64 WGRMSNISLLDQHSELKKMAEAKKESAKEKQLKEEEKILRSVA-ETKALMGVAELAKGIQYNDPIKTS---WR---AP-R 135 (367)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~-~g~d~~~~a~TgsGKT~~~p~~~~---~~---~~-~ 135 (367)
..+...|+.+++++.+.+.+...+..|+.+ |++.|+.++ .|++++++|+||+|||...|+... +. .. .
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~----q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~i 143 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHA----QRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQV 143 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGG----GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEE
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHH----HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceE
Confidence 345568999999999999987777888888 566666655 557899999999999965555422 11 11 1
Q ss_pred cccCCCHH----HHHHHHhccCe----EEecC-CCCccccc--cccCCCCHHHHHHHHHcCCCCCChhhhhcccccch--
Q psy7790 136 CILSLPDQ----VHDIIRRNLRI----LVEGD-DVPPACCS--FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-- 202 (367)
Q Consensus 136 ~i~~~~~~----~~~~~~~~~~i----~~~g~-~~~~~~~~--f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~-- 202 (367)
.+..+.+. ++..+...+.. .+|+. ........ --.+.+|+.+++.+..... ...+..-+++.+-.
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~--l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD--LSRYSCIILDEAHERT 221 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTT--CTTEEEEEECSGGGCC
T ss_pred EecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCcc--ccCCCEEEecCccccc
Confidence 22334443 33334333322 23321 11000000 0015689999987765322 22223333333321
Q ss_pred -------HHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHH----H
Q psy7790 203 -------EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKI----V 271 (367)
Q Consensus 203 -------~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~----~ 271 (367)
.-++.|... ..+.|++++|||++.+ .+. .++.+...+.+.... ..+.+.+..+...... .
T Consensus 222 ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~~l~ 292 (773)
T 2xau_A 222 LATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDSAIR 292 (773)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HHH-HHhcCCCcccccCcc-----cceEEEEecCCchhHHHHHHH
Confidence 122233322 3578999999999643 333 455554445543321 2345554444443333 3
Q ss_pred HHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHh-----------CCCeEEEEecCCCHHHHHHHHHHHh-----cCCCcE
Q psy7790 272 YLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLL-----------KGVEAVAIHGGKDQEERTRSVESFR-----KGQKDV 334 (367)
Q Consensus 272 ~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~R~~~~~~F~-----~g~~~v 334 (367)
.+.+++.. .++++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ .|..+|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 33443333 467899999999999999999975 6889999999999999999999999 999999
Q ss_pred EEecccccccCCcCCCCEEEEcCC
Q psy7790 335 MVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 335 LVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
||||+++++|||||+|++||+||+
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~ 396 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGF 396 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSE
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCC
Confidence 999999999999999999999998
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.92 E-value=1.5e-25 Score=229.53 Aligned_cols=281 Identities=14% Similarity=0.138 Sum_probs=182.0
Q ss_pred CcccHh--hhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc--CCccccCCC
Q psy7790 69 NISLLD--QHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR--APRCILSLP 141 (367)
Q Consensus 69 ~~~~l~--~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~--~~~~i~~~~ 141 (367)
+|++|+ +++.+.+.+...+ ..+++. |.++++.+++|++++++|||||||| +..|+...+. ....+..+.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~----Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~ 77 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPP----QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL 77 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCC----CHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHH----HHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 588888 9999999887665 677888 9999999999999999999999999 5566655442 222334444
Q ss_pred H----HHHHHHHh--ccCe----EEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhccccc-------
Q psy7790 142 D----QVHDIIRR--NLRI----LVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPAA------- 200 (367)
Q Consensus 142 ~----~~~~~~~~--~~~i----~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~------- 200 (367)
. +.+..++. .+++ .+|+...... .+.. +.||+++...+.... .....+..-+++.+
T Consensus 78 r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 78 RALAGEKYESFKKWEKIGLRIGISTGDYESRDE--HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS--CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh--hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEeeeeecCCCC
Confidence 4 44444421 1122 2233222111 1111 679999988876521 11111212222221
Q ss_pred chHHHHHHHhhc---cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEE------EEEechhh---
Q psy7790 201 LSEDVRTIFSFF---RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE------VEYVKQEA--- 268 (367)
Q Consensus 201 l~~~v~~Il~~l---~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~------~~~~~~~~--- 268 (367)
....+..++..+ +.+.|++++|||++. ...++. ++..+. +..... +. .+... +.+.....
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r----~~-~l~~~~~~~~~~~~~~~~~~~~ 226 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWR----PV-PLVEGVLCEGTLELFDGAFSTS 226 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCC----SS-CEEEEEECSSEEEEEETTEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCC----Cc-cceEEEeeCCeeeccCcchhhh
Confidence 124455555444 578999999999985 444544 454332 222111 11 11111 11122111
Q ss_pred ----HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC------------------------------CCeEEEEecC
Q psy7790 269 ----KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK------------------------------GVEAVAIHGG 314 (367)
Q Consensus 269 ----k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~lhg~ 314 (367)
+...+.+.+ ..++++||||++++.++.++..|... +..+..+||+
T Consensus 227 ~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 227 RRVKFEELVEECV-AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EECCHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhHHHHHHHHH-hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 444445544 35678999999999999999998642 1357889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE----cC---CCCCcccc
Q psy7790 315 KDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN----TE---AKIKKREH 365 (367)
Q Consensus 315 ~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----yd---~P~~~~~Y 365 (367)
|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~ 363 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEY 363 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHH
Confidence 99999999999999999999999999999999999999999 77 67776655
No 35
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=3.4e-25 Score=190.36 Aligned_cols=130 Identities=66% Similarity=0.974 Sum_probs=108.2
Q ss_pred HHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEec
Q psy7790 234 RSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHG 313 (367)
Q Consensus 234 ~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg 313 (367)
..+|++|..|.++..+. +..++.|.+..++...|+..|.++|...++++||||+++..++.++..|...|+.+..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~--~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGA--ASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp ---------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCC--CCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 45788999999887766 7789999999999999999999999988889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 314 GKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 314 ~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|||||+|.++..|
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~ 138 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 138 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999998877
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.1e-25 Score=231.01 Aligned_cols=267 Identities=13% Similarity=0.110 Sum_probs=179.6
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC--CccccCCC----HHHHHHHHhc---cCeEE
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA--PRCILSLP----DQVHDIIRRN---LRILV 156 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~--~~~i~~~~----~~~~~~~~~~---~~i~~ 156 (367)
-.+++. |.++|+.+..|++++++|+||+||| |..++...+.. ...+..++ .+.+..++.. .++..
T Consensus 85 f~L~~~----Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgllt 160 (1010)
T 2xgj_A 85 FTLDPF----QDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 160 (1010)
T ss_dssp SCCCHH----HHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEEC
T ss_pred CCCCHH----HHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEe
Confidence 345666 9999999999999999999999999 55566554322 22233333 4555555543 33444
Q ss_pred ecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhccccc-------chHHHHHHHhhccCCceEEeecCCCcHHH
Q psy7790 157 EGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA-------LSEDVRTIFSFFRGQRQTLLFSATMPKKI 229 (367)
Q Consensus 157 ~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~-------l~~~v~~Il~~l~~~~Q~il~SAT~~~~v 229 (367)
|+........ --++||+.+...+.... .....+..-+++.+ ....+..++..++...|++++|||+|...
T Consensus 161 Gd~~~~~~~~--IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~ 237 (1010)
T 2xgj_A 161 GDITINPDAG--CLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAM 237 (1010)
T ss_dssp SSCEECTTCS--EEEEEHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHH
T ss_pred CCCccCCCCC--EEEEcHHHHHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHH
Confidence 5443322110 12678999888776532 22222222222221 12456677888889999999999998642
Q ss_pred --HHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEe---------ch--------------------------------
Q psy7790 230 --QNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV---------KQ-------------------------------- 266 (367)
Q Consensus 230 --~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~---------~~-------------------------------- 266 (367)
..++....+++..+....... ..+.+++... +.
T Consensus 238 e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~ 313 (1010)
T 2xgj_A 238 EFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGK 313 (1010)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---------------
T ss_pred HHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccc
Confidence 233333445566554443222 1233332221 00
Q ss_pred --------------hhHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCe------------------------
Q psy7790 267 --------------EAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVE------------------------ 307 (367)
Q Consensus 267 --------------~~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~------------------------ 307 (367)
...+..++..+...+ .++||||+|+..|+.++..|...++.
T Consensus 314 ~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 393 (1010)
T 2xgj_A 314 KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDR 393 (1010)
T ss_dssp ---------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGT
T ss_pred cccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 122344556555544 48999999999999999999765442
Q ss_pred ---------------EEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE----cCC----CCCccc
Q psy7790 308 ---------------AVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN----TEA----KIKKRE 364 (367)
Q Consensus 308 ---------------~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~----yd~----P~~~~~ 364 (367)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.++..
T Consensus 394 ~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~ 473 (1010)
T 2xgj_A 394 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGE 473 (1010)
T ss_dssp TCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHH
T ss_pred cchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHH
Confidence 889999999999999999999999999999999999999999999999 999 888777
Q ss_pred c
Q psy7790 365 H 365 (367)
Q Consensus 365 Y 365 (367)
|
T Consensus 474 y 474 (1010)
T 2xgj_A 474 Y 474 (1010)
T ss_dssp H
T ss_pred H
Confidence 6
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1e-25 Score=226.95 Aligned_cols=255 Identities=13% Similarity=0.115 Sum_probs=170.5
Q ss_pred cccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccc-ccc-CCccccCCCHHHHHHHHh-------ccCe
Q psy7790 86 KKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKT-SWR-APRCILSLPDQVHDIIRR-------NLRI 154 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~-~~~-~~~~i~~~~~~~~~~~~~-------~~~i 154 (367)
.+-.|+++ |...++.+++|+ ++.++||+||| |++|+.. .+. ....|..++++++.+... .+++
T Consensus 108 lG~rP~~V----Q~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 108 LDQRPFDV----QVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HSCCCCHH----HHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCHH----HHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 45689999 999999999999 99999999999 8888753 332 344566667666655443 2333
Q ss_pred ----EEecCCCCccccccc---c--CCCCHHH-HHHHHHcC-----CCCCChhhhhcccc---c----------------
Q psy7790 155 ----LVEGDDVPPACCSFR---L--MKLPESL-VRALEAKG-----IKKPTPIQVQGIPA---A---------------- 200 (367)
Q Consensus 155 ----~~~g~~~~~~~~~f~---~--l~~p~~l-l~~l~~~g-----~~~pt~iQ~~~ip~---~---------------- 200 (367)
.+||.+ .+.+... + +|||+++ .+.|...- -.....+...+++. +
T Consensus 182 sv~~i~gg~~--~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 182 QVGVILATMT--PDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp CEEECCTTCC--HHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred eEEEEeCCCC--HHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 334443 2222111 1 7899999 78887641 11112222222211 1
Q ss_pred ----chHHHHHHHhhcc---------CCceEE-----------------eecCCCcHH---HHHHH--HHhcC-C-----
Q psy7790 201 ----LSEDVRTIFSFFR---------GQRQTL-----------------LFSATMPKK---IQNFA--RSALV-K----- 239 (367)
Q Consensus 201 ----l~~~v~~Il~~l~---------~~~Q~i-----------------l~SAT~~~~---v~~l~--~~~l~-~----- 239 (367)
+..++..|+..++ +.+|++ +||||++.. +...+ ..++. +
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 1267888888887 689999 999998753 33322 22222 1
Q ss_pred --CEEEEeCCC-CccC--------------------------CCCcce--------------------------------
Q psy7790 240 --PITINVGRA-GKIM--------------------------PSMNVV-------------------------------- 258 (367)
Q Consensus 240 --~~~i~~~~~-~~~~--------------------------~~~~i~-------------------------------- 258 (367)
..++.++.. +... +...|.
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 122222210 0000 000111
Q ss_pred ---------------EEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q psy7790 259 ---------------QEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320 (367)
Q Consensus 259 ---------------~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 320 (367)
+.++++....|...+...+.. .+.++||||+|++.++.|+..|...|+++.++||++.+.+|
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa 499 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEA 499 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHH
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 124566778899988887754 35679999999999999999999999999999999988888
Q ss_pred HHHHHHHhcCCCcEEEecccccccCCcCCC
Q psy7790 321 TRSVESFRKGQKDVMVATDVASKGLDFEEI 350 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v 350 (367)
..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 500 ~iia~agr~G--~VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 500 TIIAVAGRRG--GVTVATNMAGRGTDIVLG 527 (922)
T ss_dssp HHHHTTTSTT--CEEEEETTCSTTCCCCTT
T ss_pred HHHHhcCCCC--eEEEecchhhcCccccCC
Confidence 8888888877 699999999999999976
No 38
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.91 E-value=1.6e-26 Score=233.30 Aligned_cols=247 Identities=14% Similarity=0.140 Sum_probs=155.9
Q ss_pred ChHHHhH-HHHHHHHHHhH------hcccccccccccCCcc--ccCcccccc---cCCccccCCCHHHHHHHHhccCeEE
Q psy7790 89 SAKEKQL-KEEEKILRSVA------ETKALMGVAELAKGIQ--YNDPIKTSW---RAPRCILSLPDQVHDIIRRNLRILV 156 (367)
Q Consensus 89 ~~~~~~~-~~Q~~~i~~i~------~g~d~~~~a~TgsGKT--~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~~~i~~ 156 (367)
.++++|. +.|.++|+.++ .|+|++++|+|||||| |..|++..+ .+...+.+++++++.++.+.+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~--- 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR--- 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT---
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh---
Confidence 6788854 33458999988 9999999999999999 667776553 2345677888888888776543
Q ss_pred ecCCCCccccccccCCCCHHHH---------HHHHHcCCCCCChhhhhcccccch------HHHHHHHhhcc-CCceEEe
Q psy7790 157 EGDDVPPACCSFRLMKLPESLV---------RALEAKGIKKPTPIQVQGIPAALS------EDVRTIFSFFR-GQRQTLL 220 (367)
Q Consensus 157 ~g~~~~~~~~~f~~l~~p~~ll---------~~l~~~g~~~pt~iQ~~~ip~~l~------~~v~~Il~~l~-~~~Q~il 220 (367)
+..+......+..+++|++++ ..+... .....+..-+++.+-. ..+..+...++ ..+|+++
T Consensus 292 -~~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~ 368 (673)
T 2wv9_A 292 -GLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIF 368 (673)
T ss_dssp -TSCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -cCCeeeecccccccCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEE
Confidence 111112222233345554443 222211 1111222222222111 22333333343 6799999
Q ss_pred ecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHH
Q psy7790 221 FSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEY 300 (367)
Q Consensus 221 ~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~ 300 (367)
||||+++.+..+... ..++. .+.. .+.. .....++..+...++++||||++++.++.++..
T Consensus 369 ~SAT~~~~i~~~~~~--~~~i~-~v~~---------------~~~~-~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~ 429 (673)
T 2wv9_A 369 MTATPPGTSDPFPDT--NSPVH-DVSS---------------EIPD-RAWSSGFEWITDYAGKTVWFVASVKMSNEIAQC 429 (673)
T ss_dssp ECSSCTTCCCSSCCC--SSCEE-EEEC---------------CCCS-SCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHH
T ss_pred EcCCCChhhhhhccc--CCceE-EEee---------------ecCH-HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHH
Confidence 999998764432211 11111 1110 0111 111123344555678999999999999999999
Q ss_pred HHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE--------------------cCCCC
Q psy7790 301 LLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN--------------------TEAKI 360 (367)
Q Consensus 301 L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~--------------------yd~P~ 360 (367)
|...++++..+||. +|..+++.|++|+.+|||||+++++|||+| |++||| ||+|.
T Consensus 430 L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~ 504 (673)
T 2wv9_A 430 LQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAI 504 (673)
T ss_dssp HHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEEC
T ss_pred HHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCC
Confidence 99999999999994 799999999999999999999999999999 999999 56788
Q ss_pred Ccccc
Q psy7790 361 KKREH 365 (367)
Q Consensus 361 ~~~~Y 365 (367)
++++|
T Consensus 505 s~~~y 509 (673)
T 2wv9_A 505 TSASA 509 (673)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77766
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.91 E-value=1.9e-26 Score=223.27 Aligned_cols=231 Identities=14% Similarity=0.130 Sum_probs=142.6
Q ss_pred HhHhcccccccccccCCcc--ccCcccccc---cCCccccCCCHHHHHHHHhcc---CeEEecCCCCccccccccCCCCH
Q psy7790 104 SVAETKALMGVAELAKGIQ--YNDPIKTSW---RAPRCILSLPDQVHDIIRRNL---RILVEGDDVPPACCSFRLMKLPE 175 (367)
Q Consensus 104 ~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~~---~i~~~g~~~~~~~~~f~~l~~p~ 175 (367)
.+++|+|++++|+|||||| |..|+...+ .+...+.+++.+++.+..+.+ .+...+ ..+..+++|+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~-------~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHT-------QAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEES-------SCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeEEec-------ccceeccCCc
Confidence 4678999999999999999 567776543 234567788888888777654 222222 2223356665
Q ss_pred HHHHHHHHcC-------CCCCChhhhhcccccch------HHHHHHHhhc-cCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 176 SLVRALEAKG-------IKKPTPIQVQGIPAALS------EDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 176 ~ll~~l~~~g-------~~~pt~iQ~~~ip~~l~------~~v~~Il~~l-~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
++++.+.... ......+..-+++.+-. ..+..+...+ +.++|+++||||+++.+..++.. ..++
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~ 154 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEFPHS--NGEI 154 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhc--CCCe
Confidence 5543221110 00111111222222111 1222333333 36799999999998775433221 1111
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 321 (367)
.. + ...+... ....++..+...++++||||+|++.++.++..|...|+++..+|| .+|.
T Consensus 155 ~~-~---------------~~~~~~~-~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~ 213 (440)
T 1yks_A 155 ED-V---------------QTDIPSE-PWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFE 213 (440)
T ss_dssp EE-E---------------ECCCCSS-CCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC
T ss_pred eE-e---------------eeccChH-HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHH
Confidence 11 0 0111111 111233445556789999999999999999999999999999999 4688
Q ss_pred HHHHHHhcCCCcEEEecccccccCCcCCCCEEEE-------------------cCCCCCcccc
Q psy7790 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN-------------------TEAKIKKREH 365 (367)
Q Consensus 322 ~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~-------------------yd~P~~~~~Y 365 (367)
.+++.|++|+.+|||||+++++|||+| |++||| |++|.++.+|
T Consensus 214 ~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~ 275 (440)
T 1yks_A 214 REYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSA 275 (440)
T ss_dssp --------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred HHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHH
Confidence 999999999999999999999999999 999997 8889988776
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.91 E-value=4.3e-24 Score=224.52 Aligned_cols=259 Identities=16% Similarity=0.162 Sum_probs=172.8
Q ss_pred ChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCC--cc----ccCCCHHHHHHHHhcc-----CeE
Q psy7790 89 SAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAP--RC----ILSLPDQVHDIIRRNL-----RIL 155 (367)
Q Consensus 89 ~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~--~~----i~~~~~~~~~~~~~~~-----~i~ 155 (367)
.+++. |.++|+.+++|+|++++++||+||| |..|+...+.+. .. ..++..+++..+++.+ .+.
T Consensus 39 ~l~~~----Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l 114 (997)
T 4a4z_A 39 ELDTF----QKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI 114 (997)
T ss_dssp CCCHH----HHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE
T ss_pred CCCHH----HHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 44666 9999999999999999999999999 556665544321 12 2455667777777643 223
Q ss_pred EecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccc-------cchHHHHHHHhhccCCceEEeecCCCcHH
Q psy7790 156 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA-------ALSEDVRTIFSFFRGQRQTLLFSATMPKK 228 (367)
Q Consensus 156 ~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~-------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~ 228 (367)
.|+........ --+.+|+++...+..... ....+..-+++. .+...+..++..++.+.|++++|||+|..
T Consensus 115 ~G~~~~~~~~~--IlV~Tpe~L~~~l~~~~~-~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 115 TGDVQINPDAN--CLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp CSSCEECTTSS--EEEEEHHHHHHHHHHTCS-GGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTH
T ss_pred eCCCccCCCCC--EEEECHHHHHHHHHhCch-hhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCCh
Confidence 33332221110 116799999888764321 112222222221 12356778888899999999999999754
Q ss_pred HHHHHHHh---cCCCEEEEeCCCCccCCCCcceEEE--------------------------------------------
Q psy7790 229 IQNFARSA---LVKPITINVGRAGKIMPSMNVVQEV-------------------------------------------- 261 (367)
Q Consensus 229 v~~l~~~~---l~~~~~i~~~~~~~~~~~~~i~~~~-------------------------------------------- 261 (367)
. .++..+ ...+..+....... ..+.+.+
T Consensus 192 ~-ef~~~l~~~~~~~~~vi~~~~r~----~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (997)
T 4a4z_A 192 Y-EFANWIGRTKQKNIYVISTPKRP----VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 266 (997)
T ss_dssp H-HHHHHHHHHHTCCEEEEECSSCS----SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------------
T ss_pred H-HHHHHHhcccCCceEEEecCCCC----ccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccc
Confidence 3 333322 11233222221111 0111111
Q ss_pred -------------------------------------------------EEechhhHHHHHHHHHhhcC-CCeEEeeccH
Q psy7790 262 -------------------------------------------------EYVKQEAKIVYLLECLQKTE-PPVLIFAEKK 291 (367)
Q Consensus 262 -------------------------------------------------~~~~~~~k~~~l~~~l~~~~-~~~iVF~~s~ 291 (367)
..+....++..++..+...+ .++||||+|+
T Consensus 267 ~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr 346 (997)
T 4a4z_A 267 GGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSK 346 (997)
T ss_dssp --------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCH
Confidence 11122344667777777654 6899999999
Q ss_pred HHHHHHHHHHHhCCC---------------------------------------eEEEEecCCCHHHHHHHHHHHhcCCC
Q psy7790 292 QDVDAIHEYLLLKGV---------------------------------------EAVAIHGGKDQEERTRSVESFRKGQK 332 (367)
Q Consensus 292 ~~~~~l~~~L~~~~~---------------------------------------~~~~lhg~~~~~~R~~~~~~F~~g~~ 332 (367)
+.|+.++..|...++ .+..+||+|++.+|..+++.|++|.+
T Consensus 347 ~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~ 426 (997)
T 4a4z_A 347 KRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFI 426 (997)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCC
Confidence 999999999977665 47999999999999999999999999
Q ss_pred cEEEecccccccCCcCCCCEEEEcCCCC
Q psy7790 333 DVMVATDVASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 333 ~vLVaTd~~~rGlDi~~v~~VI~yd~P~ 360 (367)
+|||||+++++|||+|+ ..||++++|+
T Consensus 427 kVLvAT~~~a~GIDiP~-~~VVi~~~~k 453 (997)
T 4a4z_A 427 KVLFATETFAMGLNLPT-RTVIFSSIRK 453 (997)
T ss_dssp SEEEECTHHHHSCCCCC-SEEEESCSEE
T ss_pred cEEEEchHhhCCCCCCC-ceEEEecccc
Confidence 99999999999999999 6777777766
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.91 E-value=4.7e-25 Score=214.25 Aligned_cols=246 Identities=14% Similarity=0.114 Sum_probs=161.8
Q ss_pred ChHHHhHHHHHHHHHHhHhcccc-cccccccCCcc--ccCcccccc---cCCccccCCCHHHHHHHHhccC-eEE--ecC
Q psy7790 89 SAKEKQLKEEEKILRSVAETKAL-MGVAELAKGIQ--YNDPIKTSW---RAPRCILSLPDQVHDIIRRNLR-ILV--EGD 159 (367)
Q Consensus 89 ~~~~~~~~~Q~~~i~~i~~g~d~-~~~a~TgsGKT--~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~~~-i~~--~g~ 159 (367)
.++++ |+ +|+.+++|+|+ +++|+|||||| |..|++..+ .+...+.+++++++.++...+. ..+ ...
T Consensus 4 q~~~i----q~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~ 78 (451)
T 2jlq_A 4 MGEPD----YE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLPIRYQTP 78 (451)
T ss_dssp CCSCC----CC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEECCT
T ss_pred CCCCc----HH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCceeeeeec
Confidence 44555 54 79999999998 99999999999 677776442 2345567788888888776542 211 111
Q ss_pred CCCcc--ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccch------HHHHHHHh-hccCCceEEeecCCCcHHHH
Q psy7790 160 DVPPA--CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS------EDVRTIFS-FFRGQRQTLLFSATMPKKIQ 230 (367)
Q Consensus 160 ~~~~~--~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~------~~v~~Il~-~l~~~~Q~il~SAT~~~~v~ 230 (367)
..... -...-.+.+++.+.+.+..... ...+..-+++.+-. .....+.. ..+.++|+++||||+|..+.
T Consensus 79 ~~~~~~~~~~~i~~~t~~~l~~~l~~~~~--l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 156 (451)
T 2jlq_A 79 AVKSDHTGREIVDLMCHATFTTRLLSSTR--VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD 156 (451)
T ss_dssp TCSCCCCSSCCEEEEEHHHHHHHHHHCSC--CCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred cccccCCCCceEEEEChHHHHHHhhCccc--ccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCccch
Confidence 11100 0111124567778777654321 12222222222211 11112222 23457999999999987543
Q ss_pred HHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEE
Q psy7790 231 NFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVA 310 (367)
Q Consensus 231 ~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 310 (367)
.+ +..++..+...... +... ...+..++....+++||||+|++.|+.++..|...|+.+..
T Consensus 157 ~~---~~~~~~~~~~~~~~---p~~~-------------~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~ 217 (451)
T 2jlq_A 157 PF---PQSNSPIEDIEREI---PERS-------------WNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ 217 (451)
T ss_dssp SS---CCCSSCEEEEECCC---CSSC-------------CSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred hh---hcCCCceEecCccC---Cchh-------------hHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEE
Confidence 32 23344444433111 0000 01123445566789999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcC--------------------CCCCcccc
Q psy7790 311 IHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE--------------------AKIKKREH 365 (367)
Q Consensus 311 lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd--------------------~P~~~~~Y 365 (367)
+||.+. ..+++.|++|+.+|||||++++||||+|+ ++||||| +|.+..+|
T Consensus 218 lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y 287 (451)
T 2jlq_A 218 LSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASA 287 (451)
T ss_dssp ECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHH
T ss_pred CCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHH
Confidence 999854 57899999999999999999999999999 9999999 88888776
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=3.1e-23 Score=201.95 Aligned_cols=98 Identities=26% Similarity=0.416 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhh-----cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEec--------CCCHHHHHHHHHHHhcCCCcE
Q psy7790 268 AKIVYLLECLQK-----TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHG--------GKDQEERTRSVESFRKGQKDV 334 (367)
Q Consensus 268 ~k~~~l~~~l~~-----~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg--------~~~~~~R~~~~~~F~~g~~~v 334 (367)
.|+..|.++|.. .+.++||||+++..++.++..|...|+.+..+|| +|++.+|..++++|++|+.+|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 355666666665 3578999999999999999999999999999999 999999999999999999999
Q ss_pred EEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 335 MVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 335 LVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
||||+++++|||+|++++||+||+|+|+..|
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~ 453 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRS 453 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHH
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHH
Confidence 9999999999999999999999999988765
No 43
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=8.7e-23 Score=172.42 Aligned_cols=113 Identities=27% Similarity=0.347 Sum_probs=105.7
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
+..++.|++..++...|...|.+++.... .++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 34678999999999999999999998765 57999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 332 KDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 332 ~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
.+|||||+++++|+|+|++++|||||+|.++..|
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~ 115 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 115 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHH
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHH
Confidence 9999999999999999999999999999998876
No 44
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.89 E-value=6.9e-26 Score=220.56 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=146.6
Q ss_pred HHHhHhcccccccccccCCcc--ccCccccccc---CCccccCCCHHHHHHHHhccCeEEecCCCCccccccc-------
Q psy7790 102 LRSVAETKALMGVAELAKGIQ--YNDPIKTSWR---APRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFR------- 169 (367)
Q Consensus 102 i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~---~~~~i~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~------- 169 (367)
...+..|++++++|+|||||| |..|++..+. +...+..++++++.++...+. |..+......+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~----g~~v~~~~~~~~~~~t~~~ 90 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR----GLPVRYQTSAVQREHQGNE 90 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT----TSCEEECC--------CCC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc----CceEeEEecccccCCCCCc
Confidence 455678899999999999999 6778776542 344567788888887776543 222111111111
Q ss_pred --cCCCCHHHHHHHHHcCCCCCChhhhhcccccch------HHHHHHHhhc-cCCceEEeecCCCcHHHHHHHHHhcCCC
Q psy7790 170 --LMKLPESLVRALEAKGIKKPTPIQVQGIPAALS------EDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKP 240 (367)
Q Consensus 170 --~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~------~~v~~Il~~l-~~~~Q~il~SAT~~~~v~~l~~~~l~~~ 240 (367)
.+.+.+.+...+... .....+..-+++.+-. -....+.... +.++|+++||||++..+..+... ..|
T Consensus 91 ~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~--~~p 166 (459)
T 2z83_A 91 IVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDS--NAP 166 (459)
T ss_dssp SEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSC
T ss_pred EEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccC--CCC
Confidence 122333344433321 1112222333332211 1111111111 36799999999998764332211 233
Q ss_pred EEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q psy7790 241 ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320 (367)
Q Consensus 241 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 320 (367)
+....... + ..+...++.++...++++||||+|+..|+.++..|...|+.+..+||. +|
T Consensus 167 i~~~~~~~----~-------------~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R 225 (459)
T 2z83_A 167 IHDLQDEI----P-------------DRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SY 225 (459)
T ss_dssp EEEEECCC----C-------------SSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CC
T ss_pred eEEecccC----C-------------cchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HH
Confidence 33211100 0 011111234455567899999999999999999999999999999995 78
Q ss_pred HHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE--------------------cCCCCCcccc
Q psy7790 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN--------------------TEAKIKKREH 365 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~--------------------yd~P~~~~~Y 365 (367)
..+++.|++|+.+|||||+++++|||+|+ ++||| |++|.+..+|
T Consensus 226 ~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 226 DTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp CCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred HHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 88999999999999999999999999999 99999 7799998876
No 45
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.89 E-value=1.1e-22 Score=170.20 Aligned_cols=113 Identities=32% Similarity=0.481 Sum_probs=107.3
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
...++.|.++.++...|+..|..++.... .++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999998754 57999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 332 KDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 332 ~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
.+|||||+++++|+|+|++++|||||+|.++..|
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~ 119 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESY 119 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHH
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999877
No 46
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.89 E-value=4e-23 Score=220.19 Aligned_cols=263 Identities=13% Similarity=0.086 Sum_probs=173.4
Q ss_pred ccChHHHhHHHHHHHHHHhHh----cc--cccccccccCCcc--ccCcccccc--cCCccccCCCHHHHHHHHhc----c
Q psy7790 87 KESAKEKQLKEEEKILRSVAE----TK--ALMGVAELAKGIQ--YNDPIKTSW--RAPRCILSLPDQVHDIIRRN----L 152 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~----g~--d~~~~a~TgsGKT--~~~p~~~~~--~~~~~i~~~~~~~~~~~~~~----~ 152 (367)
+-.+++. |.++|+.++. |+ |++++++||+||| +..++.... .....+.+++...+.++.+. +
T Consensus 601 ~~~~t~~----Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 601 PFETTPD----QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp CSCCCHH----HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCCCHH----HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHh
Confidence 3456777 9999999887 66 9999999999999 333332221 12344566666555544332 2
Q ss_pred ---CeEE---ecCCCCcc----ccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhccccc--chHHHHHHHhhccC
Q psy7790 153 ---RILV---EGDDVPPA----CCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA--LSEDVRTIFSFFRG 214 (367)
Q Consensus 153 ---~i~~---~g~~~~~~----~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~--l~~~v~~Il~~l~~ 214 (367)
.+.+ .|..-... ...+. + ++||..+... + ....+..-+++.. +......++..++.
T Consensus 677 ~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~-----~-~~~~l~lvIiDEaH~~g~~~~~~l~~l~~ 750 (1151)
T 2eyq_A 677 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD-----V-KFKDLGLLIVDEEHRFGVRHKERIKAMRA 750 (1151)
T ss_dssp TTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC-----C-CCSSEEEEEEESGGGSCHHHHHHHHHHHT
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC-----c-cccccceEEEechHhcChHHHHHHHHhcC
Confidence 1211 11100000 00010 1 4566543211 1 1111111111111 22456677788888
Q ss_pred CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHH
Q psy7790 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDV 294 (367)
Q Consensus 215 ~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~ 294 (367)
+++++++|||.++....++...+.++..+..... ....+...+...........+...+. .+++++||||+++.+
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~----~r~~i~~~~~~~~~~~i~~~il~~l~-~g~qvlvf~~~v~~~ 825 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----RRLAVKTFVREYDSMVVREAILREIL-RGGQVYYLYNDVENI 825 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC----BCBCEEEEEEECCHHHHHHHHHHHHT-TTCEEEEECCCSSCH
T ss_pred CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC----CccccEEEEecCCHHHHHHHHHHHHh-cCCeEEEEECCHHHH
Confidence 8999999999988888887777776655443322 22345555554444443444444443 357899999999999
Q ss_pred HHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCC-CCccc
Q psy7790 295 DAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAK-IKKRE 364 (367)
Q Consensus 295 ~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P-~~~~~ 364 (367)
+.+++.|... ++.+..+||+|++.+|.+++++|++|+++|||||+++++|||+|++++||+++.+ .++..
T Consensus 826 ~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~ 898 (1151)
T 2eyq_A 826 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 898 (1151)
T ss_dssp HHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHH
Confidence 9999999887 8899999999999999999999999999999999999999999999999999884 45443
No 47
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=172.73 Aligned_cols=113 Identities=35% Similarity=0.619 Sum_probs=94.1
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+..++.|.+..++...|...|.++|... +.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 5678999999999999999999999886 46799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 331 QKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 331 ~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+.+|||||+++++|+|+|++++||+||+|.++..|
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~ 130 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 130 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999998876
No 48
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.88 E-value=6.4e-22 Score=165.97 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=103.9
Q ss_pred CcceEEEEEechhh-HHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC
Q psy7790 255 MNVVQEVEYVKQEA-KIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332 (367)
Q Consensus 255 ~~i~~~~~~~~~~~-k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 332 (367)
.++.|.++.++... |...|.+++.... +++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 36889999998877 9999999998754 679999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 333 DVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 333 ~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|||||+++++|+|+|++++|||||+|.++..|
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~ 114 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENY 114 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGG
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 999999999999999999999999999999887
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.87 E-value=9.5e-23 Score=201.19 Aligned_cols=268 Identities=10% Similarity=0.048 Sum_probs=165.5
Q ss_pred ChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc---cCCccccCCCHHHHHHHHhc---c--------
Q psy7790 89 SAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---RAPRCILSLPDQVHDIIRRN---L-------- 152 (367)
Q Consensus 89 ~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~---~-------- 152 (367)
.+++. |.++++.++.+++++.+++||+||| +..++...+ .....+..++..++.++.+. +
T Consensus 113 ~l~~~----Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 113 EPHWY----QKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp CCCHH----HHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGE
T ss_pred CCCHH----HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccce
Confidence 55666 9999999999999999999999999 445554432 22344555555444433332 1
Q ss_pred CeEEecCCCCccccccc--cCCCCHHHHHHHHHcCCCCCChhhhhcccc---cchHHHHHHHhhccCCceEEeecCCCcH
Q psy7790 153 RILVEGDDVPPACCSFR--LMKLPESLVRALEAKGIKKPTPIQVQGIPA---ALSEDVRTIFSFFRGQRQTLLFSATMPK 227 (367)
Q Consensus 153 ~i~~~g~~~~~~~~~f~--~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---~l~~~v~~Il~~l~~~~Q~il~SAT~~~ 227 (367)
....+|.....+...-. -+++++.+... +......+..-+++. +...+...+++.++..++++++|||.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRD 264 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGGG
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCCC
Confidence 11123322221110101 15677755432 000001111111111 1226788888999888999999999976
Q ss_pred HHHHH-HHHhcCCCEEEEeCCCCc----cCCCCcceEEEEEech---------------------hhHHHHHHHHHhhc-
Q psy7790 228 KIQNF-ARSALVKPITINVGRAGK----IMPSMNVVQEVEYVKQ---------------------EAKIVYLLECLQKT- 280 (367)
Q Consensus 228 ~v~~l-~~~~l~~~~~i~~~~~~~----~~~~~~i~~~~~~~~~---------------------~~k~~~l~~~l~~~- 280 (367)
....+ ....+.++..+....... ......+.......+. ..+...+..++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 344 (510)
T 2oca_A 265 GKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLA 344 (510)
T ss_dssp CSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 54322 112233444333322110 0011111111111111 12333444555443
Q ss_pred --CC-CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEec-ccccccCCcCCCCEEEEc
Q psy7790 281 --EP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVAT-DVASKGLDFEEIKHVINT 356 (367)
Q Consensus 281 --~~-~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT-d~~~rGlDi~~v~~VI~y 356 (367)
++ ++||||+ .+.++.+++.|...+.++..+||+|++.+|..+++.|++|+.+||||| +++++|+|+|++++||+|
T Consensus 345 ~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~ 423 (510)
T 2oca_A 345 QKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLA 423 (510)
T ss_dssp TTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEES
T ss_pred hcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEe
Confidence 34 4666666 888999999999998899999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCcccc
Q psy7790 357 EAKIKKREH 365 (367)
Q Consensus 357 d~P~~~~~Y 365 (367)
++|.++..|
T Consensus 424 ~~~~s~~~~ 432 (510)
T 2oca_A 424 HGVKSKIIV 432 (510)
T ss_dssp SCCCSCCHH
T ss_pred CCCCCHHHH
Confidence 999998765
No 50
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=167.48 Aligned_cols=113 Identities=18% Similarity=0.318 Sum_probs=104.8
Q ss_pred CCCcceEEEEEechhh-HHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 253 PSMNVVQEVEYVKQEA-KIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+..++.|.++.++... |+..|..++.... +++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4568999999998765 9999999998764 5799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCcCCCCEEEEcCCC------CCcccc
Q psy7790 331 QKDVMVATDVASKGLDFEEIKHVINTEAK------IKKREH 365 (367)
Q Consensus 331 ~~~vLVaTd~~~rGlDi~~v~~VI~yd~P------~~~~~Y 365 (367)
+.+|||||+++++|+|+|++++|||||+| .++.+|
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~ 124 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETY 124 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHH
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHH
Confidence 99999999999999999999999999999 666655
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.1e-23 Score=215.19 Aligned_cols=258 Identities=14% Similarity=0.123 Sum_probs=156.1
Q ss_pred cccChHHHhHHHHHHHHHHhHhc------ccccccccccCCcc--ccCccccccc--CCccccCCCHHHHHHHHhc----
Q psy7790 86 KKESAKEKQLKEEEKILRSVAET------KALMGVAELAKGIQ--YNDPIKTSWR--APRCILSLPDQVHDIIRRN---- 151 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g------~d~~~~a~TgsGKT--~~~p~~~~~~--~~~~i~~~~~~~~~~~~~~---- 151 (367)
.+-.+++. |+++|+.++.+ .+++++++|||||| |..|+...+. ....+.+++...+.++...
T Consensus 365 lpf~lt~~----Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 365 LPFKLTNA----QKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp SSSCCCHH----HHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHH----HHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 34566777 99999999887 59999999999999 6667665432 2344566666555444332
Q ss_pred c---CeE----EecCCCCcc---ccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhccccc--chHHHHHHHhhcc
Q psy7790 152 L---RIL----VEGDDVPPA---CCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPAA--LSEDVRTIFSFFR 213 (367)
Q Consensus 152 ~---~i~----~~g~~~~~~---~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~--l~~~v~~Il~~l~ 213 (367)
+ ++. .||...... ...+. + ++||+.+.+.+ .+. .+..-+++.. +...-+..+....
T Consensus 441 ~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~---~~~---~l~lVVIDEaHr~g~~qr~~l~~~~ 514 (780)
T 1gm5_A 441 FSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV---HFK---NLGLVIIDEQHRFGVKQREALMNKG 514 (780)
T ss_dssp HTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC---CCS---CCCEEEEESCCCC-----CCCCSSS
T ss_pred hhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh---hcc---CCceEEecccchhhHHHHHHHHHhC
Confidence 1 222 233221111 11111 1 56777654321 111 1111111111 0011122223334
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh---hcCCCeEEeecc
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVLIFAEK 290 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~iVF~~s 290 (367)
..+|++++|||.++....+......+...+.....+ ...+...+. ...+...+...+. ..+.+++|||++
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~----r~~i~~~~~---~~~~~~~l~~~i~~~l~~g~qvlVf~~~ 587 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG----RKEVQTMLV---PMDRVNEVYEFVRQEVMRGGQAFIVYPL 587 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS----CCCCEECCC---CSSTHHHHHHHHHHHTTTSCCBCCBCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC----CcceEEEEe---ccchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 568999999998776655443221122222211111 112222222 2223333444443 345789999996
Q ss_pred H--------HHHHHHHHHHHh---CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCC
Q psy7790 291 K--------QDVDAIHEYLLL---KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 291 ~--------~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P 359 (367)
. ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||+||+|
T Consensus 588 ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~ 667 (780)
T 1gm5_A 588 IEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPE 667 (780)
T ss_dssp C--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCS
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCC
Confidence 5 457889999987 47899999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy7790 360 I 360 (367)
Q Consensus 360 ~ 360 (367)
.
T Consensus 668 r 668 (780)
T 1gm5_A 668 R 668 (780)
T ss_dssp S
T ss_pred C
Confidence 6
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.87 E-value=1.9e-22 Score=194.69 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=142.6
Q ss_pred hcccccccccccCCcc--ccCcccccc---cCCccccCCCHHHHHHHHhccC---eEE--ecCC-CCccccccccCCCCH
Q psy7790 107 ETKALMGVAELAKGIQ--YNDPIKTSW---RAPRCILSLPDQVHDIIRRNLR---ILV--EGDD-VPPACCSFRLMKLPE 175 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT--~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~~~---i~~--~g~~-~~~~~~~f~~l~~p~ 175 (367)
.|++++++++|||||| |..|+...+ .....+.+++..++.++.+.+. +.+ ++.. ...+- .+-.+.+.+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGEPIRYMTPAVQSERTGN-EIVDFMCHS 79 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEC---------CC-CSEEEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCCCeEEEEecCccccCCCC-ceEEEEchH
Confidence 4789999999999999 556666332 2245567788888877776542 211 1111 11111 111223445
Q ss_pred HHHHHHHHc-CCCCCChhhhhccccc------chHHHHHHHhhc-cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCC
Q psy7790 176 SLVRALEAK-GIKKPTPIQVQGIPAA------LSEDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPITINVGR 247 (367)
Q Consensus 176 ~ll~~l~~~-g~~~pt~iQ~~~ip~~------l~~~v~~Il~~l-~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~ 247 (367)
.+...+... .+.. +..-+++.. +......+.... +.++|+++||||+++.+..+... +.++ +.+.
T Consensus 80 ~l~~~l~~~~~~~~---l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~i-~~~~- 152 (431)
T 2v6i_A 80 TFTMKLLQGVRVPN---YNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS--NSPI-IDEE- 152 (431)
T ss_dssp HHHHHHHHTCCCCC---CSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--SSCC-EEEE-
T ss_pred HHHHHHhcCccccC---CCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--CCce-eecc-
Confidence 555444431 1211 112222211 112222233222 46899999999998743321110 0111 1110
Q ss_pred CCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHH
Q psy7790 248 AGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESF 327 (367)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 327 (367)
..+ +..+...++..+...++++||||++++.++.+++.|...++++..+||+ +|..+++.|
T Consensus 153 --------------~~~-~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f 213 (431)
T 2v6i_A 153 --------------TRI-PDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKC 213 (431)
T ss_dssp --------------CCC-CSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHH
T ss_pred --------------ccC-CHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhh
Confidence 001 1112223345566667899999999999999999999999999999997 588899999
Q ss_pred hcCCCcEEEecccccccCCcCCCCE-----------------EEEcCCCCCcccc
Q psy7790 328 RKGQKDVMVATDVASKGLDFEEIKH-----------------VINTEAKIKKREH 365 (367)
Q Consensus 328 ~~g~~~vLVaTd~~~rGlDi~~v~~-----------------VI~yd~P~~~~~Y 365 (367)
++|+.+|||||+++++|+|+| +.+ ||+|+.|.+...|
T Consensus 214 ~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 214 KSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred cCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 999999999999999999999 766 5788888887766
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.86 E-value=2.7e-23 Score=207.43 Aligned_cols=233 Identities=14% Similarity=0.063 Sum_probs=146.2
Q ss_pred HHHHHHHhHhcccccccccccCCccc--cCcccccccCCccccCCCHHHHHHHHh----c----cCeEEecCCCCccccc
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQY--NDPIKTSWRAPRCILSLPDQVHDIIRR----N----LRILVEGDDVPPACCS 167 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT~--~~p~~~~~~~~~~i~~~~~~~~~~~~~----~----~~i~~~g~~~~~~~~~ 167 (367)
|+++++.+..++|++++|+||||||+ ..|+... .....+..++++.+.++.+ . ....+|+...... .
T Consensus 222 q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~~~--~ 298 (666)
T 3o8b_A 222 NSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTG--A 298 (666)
T ss_dssp CCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCC--C
T ss_pred HHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEeccCC--C
Confidence 56667777789999999999999994 4444432 1134456666665555543 2 2233444321000 0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCChhhh------hcccccchHHHHHHHhhccCCce--EEeecCCCcHHHHHHHHHhcCC
Q psy7790 168 FRLMKLPESLVRALEAKGIKKPTPIQV------QGIPAALSEDVRTIFSFFRGQRQ--TLLFSATMPKKIQNFARSALVK 239 (367)
Q Consensus 168 f~~l~~p~~ll~~l~~~g~~~pt~iQ~------~~ip~~l~~~v~~Il~~l~~~~Q--~il~SAT~~~~v~~l~~~~l~~ 239 (367)
---+++|++++. ...+ ....+.. +.++.-+...+..|++.++..+| ++++|||++..+. ...
T Consensus 299 ~IlV~TPGrLl~---~~~l-~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~ 368 (666)
T 3o8b_A 299 PVTYSTYGKFLA---DGGC-SGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH 368 (666)
T ss_dssp SEEEEEHHHHHH---TTSC-CTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCC
T ss_pred CEEEECcHHHHh---CCCc-ccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCC
Confidence 011678999742 2221 1222222 23333344678888998887777 6777999987421 111
Q ss_pred CEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH
Q psy7790 240 PITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319 (367)
Q Consensus 240 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 319 (367)
+....+..... ..+ .+...... +-...++++||||+|++.++.+++.|...|+++..+||+|++.+
T Consensus 369 p~i~~v~~~~~----~~i----~~~~~~~~------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 369 PNIEEVALSNT----GEI----PFYGKAIP------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV 434 (666)
T ss_dssp TTEEEEECBSC----SSE----EETTEEEC------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG
T ss_pred cceEEEeeccc----chh----HHHHhhhh------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH
Confidence 21111111000 000 00000000 00113568999999999999999999999999999999999875
Q ss_pred HHHHHHHHhcCCCcEEEecccccccCCcCCCCEEE----------EcC-----------CCCCcccc
Q psy7790 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI----------NTE-----------AKIKKREH 365 (367)
Q Consensus 320 R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI----------~yd-----------~P~~~~~Y 365 (367)
|+++..+||||||+++||||++ |++|| ||| +|.+.++|
T Consensus 435 -------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~sy 493 (666)
T 3o8b_A 435 -------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSR 493 (666)
T ss_dssp -------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHH
T ss_pred -------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHH
Confidence 4567779999999999999997 99998 788 89988877
No 54
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=3.4e-21 Score=168.23 Aligned_cols=110 Identities=28% Similarity=0.408 Sum_probs=103.0
Q ss_pred cceEEEEEechhhHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcE
Q psy7790 256 NVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV 334 (367)
Q Consensus 256 ~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~v 334 (367)
.+.+..+.+....|+..|.+++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 4556777888899999999999865 468999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 335 MVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 335 LVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
||||++++||+|+|+|++|||||+|.++..|
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~ 115 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAY 115 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHH
Confidence 9999999999999999999999999999877
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.85 E-value=1.2e-22 Score=198.47 Aligned_cols=257 Identities=19% Similarity=0.141 Sum_probs=163.2
Q ss_pred ChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCCHHHHHHHHhc---cCeE-E----ec
Q psy7790 89 SAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDIIRRN---LRIL-V----EG 158 (367)
Q Consensus 89 ~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~~~~~---~~i~-~----~g 158 (367)
.+++. |.++++.++.+++++.+++||+||| |..++... ..+..+..++.....++... +++. + |+
T Consensus 93 ~l~~~----Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~ 167 (472)
T 2fwr_A 93 SLRDY----QEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGR 167 (472)
T ss_dssp CBCHH----HHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSS
T ss_pred CcCHH----HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCC
Confidence 34555 9999999999999999999999999 44454433 34455666665555555443 3222 1 22
Q ss_pred CCCCccccccccCCCCHHHHHHHHHcC--C--CCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcH-------
Q psy7790 159 DDVPPACCSFRLMKLPESLVRALEAKG--I--KKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPK------- 227 (367)
Q Consensus 159 ~~~~~~~~~f~~l~~p~~ll~~l~~~g--~--~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~------- 227 (367)
......+ -+++++.+...+.... | ....+.+. +.......++..++ .++++++|||...
T Consensus 168 ~~~~~~I----vv~T~~~l~~~~~~~~~~~~liIvDEaH~-----~~~~~~~~~~~~~~-~~~~l~lSATp~~~~~~~~~ 237 (472)
T 2fwr_A 168 IKELKPL----TVSTYDSAYVNAEKLGNRFMLLIFDEVHH-----LPAESYVQIAQMSI-APFRLGLTATFEREDGRHEI 237 (472)
T ss_dssp CBCCCSE----EEEEHHHHHHTHHHHTTTCSEEEEETGGG-----TTSTTTHHHHHTCC-CSEEEEEESCCCCTTSGGGS
T ss_pred cCCcCCE----EEEEcHHHHHHHHHhcCCCCEEEEECCcC-----CCChHHHHHHHhcC-CCeEEEEecCccCCCCHHHH
Confidence 2111111 2567777776654321 1 11111111 11123344555553 5789999999862
Q ss_pred ------------HHHHHHHHhcCCCEE--EEeCCCCc----------------------cCCCCcceEE-----------
Q psy7790 228 ------------KIQNFARSALVKPIT--INVGRAGK----------------------IMPSMNVVQE----------- 260 (367)
Q Consensus 228 ------------~v~~l~~~~l~~~~~--i~~~~~~~----------------------~~~~~~i~~~----------- 260 (367)
....+...++..+.. +.+..... ......+.+.
T Consensus 238 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (472)
T 2fwr_A 238 LKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAY 317 (472)
T ss_dssp HHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSS
T ss_pred HHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHH
Confidence 233332233333322 11110000 0000000000
Q ss_pred ----------EEEechhhHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc
Q psy7790 261 ----------VEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 261 ----------~~~~~~~~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 329 (367)
...+....|...|.+++... +.++||||+++..++.++..|. +..+||+++..+|..+++.|++
T Consensus 318 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 318 EALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp TTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC
Confidence 00123445777888888765 4689999999999999999983 5679999999999999999999
Q ss_pred CCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 330 GQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 330 g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
|+.+|||||+++++|+|+|++++||+||+|.++..|
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~ 428 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREY 428 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHH
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHH
Confidence 999999999999999999999999999999998765
No 56
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=6.7e-21 Score=174.41 Aligned_cols=110 Identities=28% Similarity=0.411 Sum_probs=104.5
Q ss_pred cceEEEEEechhhHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcE
Q psy7790 256 NVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV 334 (367)
Q Consensus 256 ~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~v 334 (367)
++.|.++.+....|+..|.+++... ++++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4678899999999999999998765 568999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 335 MVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 335 LVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
||||++++||+|+|+|++|||||+|.++..|
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y 112 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAY 112 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHH
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHH
Confidence 9999999999999999999999999999887
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.84 E-value=1.2e-21 Score=197.52 Aligned_cols=227 Identities=13% Similarity=0.144 Sum_probs=142.1
Q ss_pred HhHhcccccccccccCCccccCcccccc--cCCccccCCCHHHHHHHHhc-------cCeEEecCCCCccccccccCCCC
Q psy7790 104 SVAETKALMGVAELAKGIQYNDPIKTSW--RAPRCILSLPDQVHDIIRRN-------LRILVEGDDVPPACCSFRLMKLP 174 (367)
Q Consensus 104 ~i~~g~d~~~~a~TgsGKT~~~p~~~~~--~~~~~i~~~~~~~~~~~~~~-------~~i~~~g~~~~~~~~~f~~l~~p 174 (367)
..++|++++++|+||||||+ ++...+ .....+..++++.+.++.+. +.+.+||... -+++|
T Consensus 151 r~l~rk~vlv~apTGSGKT~--~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~Tp 220 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY--HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPN 220 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH--HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTT
T ss_pred HhcCCCEEEEEcCCCCCHHH--HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCC
Confidence 45689999999999999995 222221 12234445555444444332 2333444332 11233
Q ss_pred HHHHHHHHH----------cCCCCCChhhhhcccccchHHHHHHHhhcc-CCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 175 ESLVRALEA----------KGIKKPTPIQVQGIPAALSEDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 175 ~~ll~~l~~----------~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~-~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
+++.+.+.. .++....++|.. ....+...+..++..++ ...|++++|||. +.+..++... .....+
T Consensus 221 Gr~~~il~~T~e~~~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v 297 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEV 297 (677)
T ss_dssp CCCCSEEEEEGGGCCSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEE
T ss_pred CcccceeEecHhHhhhcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEE
Confidence 222221110 011111222221 12223356667777776 778999999995 3455555443 344443
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 323 (367)
....... ...+ ... .+..+....++.||||+|++.++.++..|...++.+..+||+|++.+|..+
T Consensus 298 ~~~~r~~---~l~~------~~~------~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~ 362 (677)
T 3rc3_A 298 RDYKRLT---PISV------LDH------ALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQ 362 (677)
T ss_dssp EECCCSS---CEEE------CSS------CCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHH
T ss_pred EEeeecc---hHHH------HHH------HHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHH
Confidence 2211100 0000 000 001222335567999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCCcEEEecccccccCCcCCCCEEEEcCCC
Q psy7790 324 VESFRK--GQKDVMVATDVASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 324 ~~~F~~--g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P 359 (367)
++.|++ |+.+|||||+++++|||+ +|++||+||++
T Consensus 363 ~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 363 AKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp HHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred HHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 999999 899999999999999999 99999999994
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.82 E-value=1.8e-20 Score=205.44 Aligned_cols=259 Identities=13% Similarity=0.085 Sum_probs=157.7
Q ss_pred ccChHHHhHHHHHHHHHHhHh-cccccccccccCCcc--ccCcccccccC----CccccCCC----HHHHHHHHhcc---
Q psy7790 87 KESAKEKQLKEEEKILRSVAE-TKALMGVAELAKGIQ--YNDPIKTSWRA----PRCILSLP----DQVHDIIRRNL--- 152 (367)
Q Consensus 87 ~~~~~~~~~~~Q~~~i~~i~~-g~d~~~~a~TgsGKT--~~~p~~~~~~~----~~~i~~~~----~~~~~~~~~~~--- 152 (367)
....+++ |.++++.++. +++++++|||||||| +..|+...+.. ...+.+++ .+.+..+++.+
T Consensus 924 f~~fnpi----Q~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~ 999 (1724)
T 4f92_B 924 FPFFNPI----QTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDR 999 (1724)
T ss_dssp CSBCCHH----HHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHH----HHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchh
Confidence 4666777 9999999975 567999999999999 66777766521 12233444 45555555432
Q ss_pred -CeEEecC--CCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhh---hcccccc------h-------HHHHHHH
Q psy7790 153 -RILVEGD--DVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQV---QGIPAAL------S-------EDVRTIF 209 (367)
Q Consensus 153 -~i~~~g~--~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~---~~ip~~l------~-------~~v~~Il 209 (367)
++.++.. +.....+.... +.||+++...++. +.....++. -+++.+- . ..++.+.
T Consensus 1000 ~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~--~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~ 1077 (1724)
T 4f92_B 1000 LNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRR--WKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYIS 1077 (1724)
T ss_dssp SCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTT--TTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhC--cccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHH
Confidence 3333211 11111111111 6799987555432 111111111 1111110 0 2334444
Q ss_pred hhccCCceEEeecCCCcHHHHHHHHHhcCC-CEEEEeCCCCccCCCCcceEEEEEech---hhHHH----HHHHHHhh--
Q psy7790 210 SFFRGQRQTLLFSATMPKKIQNFARSALVK-PITINVGRAGKIMPSMNVVQEVEYVKQ---EAKIV----YLLECLQK-- 279 (367)
Q Consensus 210 ~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~----~l~~~l~~-- 279 (367)
...+...|+|++|||++. ...++...-.+ .....+..... +..+..++..... ..+.. .+...+..
T Consensus 1078 ~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R---PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1153 (1724)
T 4f92_B 1078 SQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR---PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHS 1153 (1724)
T ss_dssp HTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC---SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHC
T ss_pred hhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC---CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhc
Confidence 556778999999999975 45555443222 22223333322 1223333333322 12221 22233333
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhC----------------------------------CCeEEEEecCCCHHHHHHHHH
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLK----------------------------------GVEAVAIHGGKDQEERTRSVE 325 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~lhg~~~~~~R~~~~~ 325 (367)
.+.++||||+|+..|+.++..|... ...++.+||||++.+|..+++
T Consensus 1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B 1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred CCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence 3468999999999999888776321 134889999999999999999
Q ss_pred HHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 326 SFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 326 ~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
.|++|.++|||||+++++|+|+|.+.+||.
T Consensus 1234 lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~ 1263 (1724)
T 4f92_B 1234 LFSSGAIQVVVASRSLCWGMNVAAHLVIIM 1263 (1724)
T ss_dssp HHHHTSBCEEEEEGGGSSSCCCCBSEEEEE
T ss_pred HHHCCCCeEEEEChHHHcCCCCCccEEEEe
Confidence 999999999999999999999999999994
No 59
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.72 E-value=5.4e-22 Score=167.26 Aligned_cols=111 Identities=24% Similarity=0.419 Sum_probs=104.0
Q ss_pred CcceEEEEEech-hhHHHHHHHHHhhcC-CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC
Q psy7790 255 MNVVQEVEYVKQ-EAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332 (367)
Q Consensus 255 ~~i~~~~~~~~~-~~k~~~l~~~l~~~~-~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 332 (367)
.++.|.+..++. ..|...|..++.... .++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 367888888888 889999999887754 579999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 333 DVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 333 ~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|||||+++++|+|+|++++|||||+|.++..|
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~ 114 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTY 114 (170)
Confidence 999999999999999999999999999999887
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=2.1e-20 Score=205.01 Aligned_cols=256 Identities=14% Similarity=0.162 Sum_probs=155.7
Q ss_pred cChHHHhHHHHHHHHHHhH-hcccccccccccCCcc--ccCcccccccC------------C-cc----ccCCCHHHHHH
Q psy7790 88 ESAKEKQLKEEEKILRSVA-ETKALMGVAELAKGIQ--YNDPIKTSWRA------------P-RC----ILSLPDQVHDI 147 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~-~g~d~~~~a~TgsGKT--~~~p~~~~~~~------------~-~~----i~~~~~~~~~~ 147 (367)
++..++ |.++++.++ .+++++++|||||||| +.++++..+.. . .. ..++..|....
T Consensus 78 ~~ln~i----Qs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 78 KTLNRI----QSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp SBCCHH----HHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCHH----HHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHH
Confidence 556677 999999987 5789999999999999 55555443210 0 11 23444566666
Q ss_pred HHhc---cCeEE----ecCCCCcccccccc----CCCCHHHHHHHHHcCCCC--CChhhhhccccc--ch----HHHHHH
Q psy7790 148 IRRN---LRILV----EGDDVPPACCSFRL----MKLPESLVRALEAKGIKK--PTPIQVQGIPAA--LS----EDVRTI 208 (367)
Q Consensus 148 ~~~~---~~i~~----~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~--pt~iQ~~~ip~~--l~----~~v~~I 208 (367)
+++. +++.| |+..... ..+.. +.||+++ +.+...+... ...+..-+++.+ +. ..++.+
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~--~~~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~ 230 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCK--EEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEAL 230 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCC--TTGGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCc--cccCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHH
Confidence 6553 34433 4433322 12222 5788886 4443322110 011111122221 11 122222
Q ss_pred -------HhhccCCceEEeecCCCcHHHHHHHHHhcC-CC--EEEEeCCCCccCCCCcceEEEEEechhh---HHHH---
Q psy7790 209 -------FSFFRGQRQTLLFSATMPKKIQNFARSALV-KP--ITINVGRAGKIMPSMNVVQEVEYVKQEA---KIVY--- 272 (367)
Q Consensus 209 -------l~~l~~~~Q~il~SAT~~~~v~~l~~~~l~-~~--~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~--- 272 (367)
....+...|+|++|||+|+ ..+++. |++ ++ ....++.... +..+.+.++.+.... +...
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~R---PvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSFR---PVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGGC---SSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCCCc---cCccEEEEeccCCcchhhhhHHHHH
Confidence 2345678899999999975 455554 443 21 1112222222 223455554443321 1222
Q ss_pred -HHHHHhhc--CCCeEEeeccHHHHHHHHHHHHhC-------------------------------------CCeEEEEe
Q psy7790 273 -LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLK-------------------------------------GVEAVAIH 312 (367)
Q Consensus 273 -l~~~l~~~--~~~~iVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lh 312 (367)
+...+... ++++||||+|++.|+.++..|... ...++.+|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 22233332 457999999999999998888431 12488999
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEE
Q psy7790 313 GGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355 (367)
Q Consensus 313 g~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~ 355 (367)
|||++.+|..+.+.|++|.++|||||+.+++|+|+|.+++||.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~ 428 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK 428 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe
Confidence 9999999999999999999999999999999999999999996
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.77 E-value=1.9e-19 Score=180.68 Aligned_cols=84 Identities=11% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC--------eEEEEecCCCHHHHHHHHHHHhcCCCc---EEEecccccccCCcCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV--------EAVAIHGGKDQEERTRSVESFRKGQKD---VMVATDVASKGLDFEE 349 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~--------~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLVaTd~~~rGlDi~~ 349 (367)
.+++||||+++..|+.++..|...+. .+..+||+++. +|..++++|++|+.. |||||+++++|+|+|+
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~ 517 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPT 517 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchh
Confidence 36799999999999999999976543 37889999764 799999999998876 8999999999999999
Q ss_pred CCEEEEcCCCCCcccc
Q psy7790 350 IKHVINTEAKIKKREH 365 (367)
Q Consensus 350 v~~VI~yd~P~~~~~Y 365 (367)
|++||+|++|.++..|
T Consensus 518 v~~Vi~~~~~~s~~~~ 533 (590)
T 3h1t_A 518 CKNVVLARVVNSMSEF 533 (590)
T ss_dssp EEEEEEESCCCCHHHH
T ss_pred eeEEEEEecCCChHHH
Confidence 9999999999998876
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=158.34 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=133.1
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhc--ccccccccccCCcc--ccCccccccc-----CCc
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAET--KALMGVAELAKGIQ--YNDPIKTSWR-----APR 135 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g--~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~ 135 (367)
+..+|..+++++.+++++...+ ..|+++ |.++|+.++.| +|++++|+|||||| |.+|++..+. +..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~i----Q~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~ 165 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKI----QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQC 165 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHH----HHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceE
Confidence 3468999999999999997766 889999 99999999998 99999999999999 7788876653 235
Q ss_pred cccCCCHHHHHHHHhc----------c--CeEEecCCCCcccccccc--CCCCHHHHHHHHHcCCCCCChhhhhcccc--
Q psy7790 136 CILSLPDQVHDIIRRN----------L--RILVEGDDVPPACCSFRL--MKLPESLVRALEAKGIKKPTPIQVQGIPA-- 199 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~~----------~--~i~~~g~~~~~~~~~f~~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~-- 199 (367)
.+..++++++.++... + ...++|.........-.+ ++||+++++.+.+.++.....+..-+++.
T Consensus 166 lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 5678888776664331 1 123344443322211112 68999999999765554444444433332
Q ss_pred ------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCC
Q psy7790 200 ------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGR 247 (367)
Q Consensus 200 ------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~ 247 (367)
.+...+..|+..++.++|+++||||++..+..++..++++|..|.+..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 233678888899999999999999999999999999999999998753
No 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.73 E-value=3.8e-17 Score=165.29 Aligned_cols=142 Identities=20% Similarity=0.221 Sum_probs=107.4
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeecc
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEK 290 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s 290 (367)
..+|+++||||.+...... ............+. ..+. +.......+...|+..|.. .+.++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l--~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGL--LDPL----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCC--CCCE----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCC--CCCe----EEEecccchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4689999999998754322 11222221111111 1111 1222333445555555543 35689999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC-----CCCcccc
Q psy7790 291 KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA-----KIKKREH 365 (367)
Q Consensus 291 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~-----P~~~~~Y 365 (367)
+..++.++..|...|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||+||. |.+...|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 8887766
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.73 E-value=1e-17 Score=176.26 Aligned_cols=101 Identities=19% Similarity=0.349 Sum_probs=93.1
Q ss_pred chhhHHHHHHHHHhhc-CCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHHHhcCC--CcEEEeccc
Q psy7790 265 KQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEERTRSVESFRKGQ--KDVMVATDV 340 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~~-~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLVaTd~ 340 (367)
....|...|.+++... +.++||||+++..++.++..|.. .|+++..+||+|++.+|..+++.|++|+ ++|||||++
T Consensus 486 ~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp TTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred CccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 3446788888888764 56899999999999999999995 5999999999999999999999999998 999999999
Q ss_pred ccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 341 ASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 341 ~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+++|+|+|++++||+||+|.++..|
T Consensus 566 ~~~GlDl~~~~~VI~~d~p~~~~~~ 590 (968)
T 3dmq_A 566 GSEGRNFQFASHMVMFDLPFNPDLL 590 (968)
T ss_dssp TTCSSCCTTCCEEECSSCCSSHHHH
T ss_pred hhcCCCcccCcEEEEecCCCCHHHH
Confidence 9999999999999999999998876
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.72 E-value=4.9e-17 Score=161.01 Aligned_cols=143 Identities=19% Similarity=0.256 Sum_probs=112.2
Q ss_pred ceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceE-EEEEechhhHHHHHHHHHhh---cCCCeEEeeccH
Q psy7790 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQ-EVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKK 291 (367)
Q Consensus 216 ~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~ 291 (367)
..+..+|+|+..+...+.+.|--+ ++.+.. +. +...+.+ .++++....|...++..+.. .+.++||||+|+
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nk--p~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~ 484 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HK--PMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSI 484 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SS--CCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSH
T ss_pred hHHeEECCCCchHHHHHHHHhCCe--EEEECC-CC--CcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCH
Confidence 578899999998887777666433 333332 22 2233333 35677888999999998875 467899999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcC--------CCCEEEEcCCCCCcc
Q psy7790 292 QDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFE--------EIKHVINTEAKIKKR 363 (367)
Q Consensus 292 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~--------~v~~VI~yd~P~~~~ 363 (367)
+.++.++..|...|+++.++||+..+.+|..+...|+.| .|+||||+|+||+||+ ++.|||||++|.+..
T Consensus 485 e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r 562 (822)
T 3jux_A 485 EKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRR 562 (822)
T ss_dssp HHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHH
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHH
Confidence 999999999999999999999996555555555566655 6999999999999998 667999999999988
Q ss_pred cc
Q psy7790 364 EH 365 (367)
Q Consensus 364 ~Y 365 (367)
.|
T Consensus 563 ~y 564 (822)
T 3jux_A 563 ID 564 (822)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 66
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.71 E-value=8.8e-17 Score=162.67 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=106.6
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---cCCCeEEeecc
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEK 290 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s 290 (367)
..+|+++||||.+...... ........+...+. ..+ .+.......+...|+..|.. .+.++||||+|
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l--~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGL--LDP----LVRVKPTENQILDLMEGIRERAARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCC--CCC----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCC--CCC----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4689999999998654222 11111111111111 111 12222333455555555543 45689999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC-----CCCcccc
Q psy7790 291 KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA-----KIKKREH 365 (367)
Q Consensus 291 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~-----P~~~~~Y 365 (367)
+..++.++..|...|+++..+||+|++.+|..+++.|+.|+++|||||+++++|+|+|+|++||+||. |.+..+|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 8887765
No 67
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.71 E-value=9.7e-18 Score=149.93 Aligned_cols=177 Identities=20% Similarity=0.295 Sum_probs=127.6
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc-----cCCccc
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-----RAPRCI 137 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-----~~~~~i 137 (367)
...+|+++++++.+.+++...+ ..+++. |.++++.+++|+|++++|+||+||| |..|+...+ .+...+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~li 116 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKI----QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALV 116 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEE
Confidence 3467999999999999997776 788988 9999999999999999999999999 667776543 123445
Q ss_pred cCCCHHHHHHHHhc-------c----CeEEecCCCCccccccc-----cCCCCHHHHHHHHHcCCCCCChhhhhcccc--
Q psy7790 138 LSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFR-----LMKLPESLVRALEAKGIKKPTPIQVQGIPA-- 199 (367)
Q Consensus 138 ~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~-----~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~-- 199 (367)
..++++.+.++.+. . ...+||.+...+...+. -+++|+++.+.+...+......+..-+++.
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 66776655544432 1 22334443222221111 168999999998874432233333333332
Q ss_pred -----cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 200 -----ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 200 -----~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.+...+..|+..++..+|+++||||++..+.++++.++++|+.|.++
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 23367888999999999999999999999999999999999998764
No 68
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.70 E-value=1.8e-17 Score=147.53 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=131.4
Q ss_pred cccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc----------
Q psy7790 65 GRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---------- 131 (367)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---------- 131 (367)
.+..+|.++++++.+.+.+...+ ..+++. |.++++.+++|+|++++|+||+||| |..|+...+
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~ 101 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAI----QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD 101 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHH----HHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTC
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCC
Confidence 34577999999999999997766 778998 9999999999999999999999999 777776542
Q ss_pred cCCccccCCCHHHHHHHHhc-------c----CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhh
Q psy7790 132 RAPRCILSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQ 195 (367)
Q Consensus 132 ~~~~~i~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~ 195 (367)
.+...+..++++.+.++.+. . ...+||.........+.. +++|+++.+.+....+ ....+..-
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~~~l 180 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT-NLRRTTYL 180 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSC-CCTTCCEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCC-CcccccEE
Confidence 22345667777665555432 1 223345443333332221 6899999999876543 22333333
Q ss_pred cccc-------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCC
Q psy7790 196 GIPA-------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRA 248 (367)
Q Consensus 196 ~ip~-------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~ 248 (367)
+++. .+..++..|++.++.++|+++||||+|+.+..+++.++++|+.|.++..
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 3332 2447889999999999999999999999999999999999999998754
No 69
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.68 E-value=6.9e-17 Score=143.04 Aligned_cols=176 Identities=18% Similarity=0.238 Sum_probs=127.1
Q ss_pred cCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc---------cCC
Q psy7790 67 MSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---------RAP 134 (367)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---------~~~ 134 (367)
..+|+++++++.+.+.+...+ ..+++. |+++++.+++|+|++++++||+||| |..|+...+ .+.
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~----Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 99 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEI----QKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLG 99 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHH----HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCce
Confidence 457999999999999997666 778888 9999999999999999999999999 677766542 123
Q ss_pred ccccCCCHHHHHHHHhc-----------cCeEEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccc
Q psy7790 135 RCILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPA 199 (367)
Q Consensus 135 ~~i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~ 199 (367)
..+..++.+.+.++.+. .....||.+.......+.. +++|+++.+.+...+......+..-+++.
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 34667776655554432 1223355444333222222 68999999998765433333333333332
Q ss_pred c-------chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 200 A-------LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 200 ~-------l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
+ +...+..++..++..+|+++||||+++.+..+++.++.+|..|.++
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 2 3377888999999999999999999999999999999999998775
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.68 E-value=5.7e-16 Score=152.23 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=82.5
Q ss_pred HHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHHHHHHHhcC-CCc-EEEeccccc
Q psy7790 269 KIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEERTRSVESFRKG-QKD-VMVATDVAS 342 (367)
Q Consensus 269 k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-vLVaTd~~~ 342 (367)
|+..+.+++.. .+.++||||+++..++.+...|... |+.+..+||++++.+|.+++++|++| ... +||||++++
T Consensus 326 K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~ 405 (500)
T 1z63_A 326 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 405 (500)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred hHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc
Confidence 44445555543 4568999999999999999999875 99999999999999999999999999 555 799999999
Q ss_pred ccCCcCCCCEEEEcCCCCCcccc
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+|+|++++++||+||+|+|+..|
T Consensus 406 ~Glnl~~~~~vi~~d~~~~~~~~ 428 (500)
T 1z63_A 406 FGINLTSANRVIHFDRWWNPAVE 428 (500)
T ss_dssp CCCCCTTCSEEEESSCCSCC---
T ss_pred CCCchhhCCEEEEeCCCCCcchH
Confidence 99999999999999999999876
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=141.24 Aligned_cols=177 Identities=18% Similarity=0.141 Sum_probs=125.4
Q ss_pred ccccCCccc-HhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc--------
Q psy7790 64 WGRMSNISL-LDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW-------- 131 (367)
Q Consensus 64 ~~~~~~~~~-l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~-------- 131 (367)
+.+..+|.+ +++++.+.+++...+ ..+++. |.++++.+++|+|++++|+||+||| |..|+...+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPI----QSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 345567888 799999999987666 788999 9999999999999999999999999 677766532
Q ss_pred ---cCCccccCCCHHHHHHHHhcc----------CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhh
Q psy7790 132 ---RAPRCILSLPDQVHDIIRRNL----------RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQ 193 (367)
Q Consensus 132 ---~~~~~i~~~~~~~~~~~~~~~----------~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ 193 (367)
.+...+..++++.+.++.+.+ ....||.........+.. +++|+++.+.+....+. ...+.
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~-~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVN-LRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCC-CTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcC-cccce
Confidence 122345677776655554321 123345444333333221 68999999987754432 23333
Q ss_pred hhccccc-------chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 194 VQGIPAA-------LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 194 ~~~ip~~-------l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
.-+++.+ +...+..|+..++.++|+++||||+|+.+..++..++++|+.|.+
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 3333322 347888999999999999999999999999999999999998753
No 72
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.67 E-value=8.4e-17 Score=142.72 Aligned_cols=177 Identities=16% Similarity=0.232 Sum_probs=122.9
Q ss_pred cccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCcc
Q psy7790 65 GRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRC 136 (367)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~ 136 (367)
.+..+|+++++++.+.+++...+ ..+++. |.++++.+++|+|++++++||+||| |..|+...+. +...
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~----Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~l 102 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAI----QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQAL 102 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHH----HHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 34567999999999999987666 678998 9999999999999999999999999 6777766542 2344
Q ss_pred ccCCCHHHHHHHHhc-----------cCeEEecCCCCccccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhcccc
Q psy7790 137 ILSLPDQVHDIIRRN-----------LRILVEGDDVPPACCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPA 199 (367)
Q Consensus 137 i~~~~~~~~~~~~~~-----------~~i~~~g~~~~~~~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~ 199 (367)
+..++.+.+.++.+. ....+||.........+. + +++|+++.+.+....+ ....+..-+++.
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~lViDE 181 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYL-SPKWIKMFVLDE 181 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSS-CSTTCCEEEEES
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCc-CcccCcEEEECC
Confidence 667776655554432 122345554443333322 1 5799999998875432 223333323322
Q ss_pred -------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 200 -------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 200 -------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.+...+..|++.++..+|+++||||+|+.+.++++.++++|+.|.++
T Consensus 182 ah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 182 ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred chHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 13367888889999999999999999999999999999999988764
No 73
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.65 E-value=4.6e-16 Score=140.47 Aligned_cols=101 Identities=13% Similarity=0.249 Sum_probs=92.5
Q ss_pred chhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHHHHHHHhcC-CCc-EEEec
Q psy7790 265 KQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEERTRSVESFRKG-QKD-VMVAT 338 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-vLVaT 338 (367)
....|+..|.++|.. .+.++||||++...++.+...|... |+.+..+||++++.+|..++++|++| .+. +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 456788888888765 4678999999999999999999885 99999999999999999999999999 777 78999
Q ss_pred ccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 339 DVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 339 d~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
+++++|||++++++|||||+|+|+..|
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~ 199 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVE 199 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHH
Confidence 999999999999999999999999877
No 74
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.65 E-value=3.4e-17 Score=146.60 Aligned_cols=188 Identities=23% Similarity=0.298 Sum_probs=126.7
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc----------
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR---------- 132 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~---------- 132 (367)
+..+|++|++++.+++++...+ ..+++. |.++++.+++|+|++++|+||+||| |..|+...+.
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 96 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPI----QKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 96 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccc
Confidence 4467999999999998886555 778888 9999999999999999999999999 6777765431
Q ss_pred ----CCccccCCCHHHHHHHHhc---------c--CeEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChh
Q psy7790 133 ----APRCILSLPDQVHDIIRRN---------L--RILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPI 192 (367)
Q Consensus 133 ----~~~~i~~~~~~~~~~~~~~---------~--~i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~i 192 (367)
+...+..++++.+.++.+. . ....||.+.......+.. +++|+++.+.+....+. ...+
T Consensus 97 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~-~~~~ 175 (253)
T 1wrb_A 97 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKIS-LEFC 175 (253)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBC-CTTC
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCC-hhhC
Confidence 2445677777666655432 1 123355544333332221 68999999988764432 2222
Q ss_pred hhhcccc-------cchHHHHHHHhhc--cC--CceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEE
Q psy7790 193 QVQGIPA-------ALSEDVRTIFSFF--RG--QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE 260 (367)
Q Consensus 193 Q~~~ip~-------~l~~~v~~Il~~l--~~--~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~ 260 (367)
..-+++. .+..++..|+..+ +. .+|+++||||+++++..+++.++.+|..|.++..+. ...+|.|.
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~i~q~ 252 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGS--TSDSIKQE 252 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--------------
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCC--CcCCceec
Confidence 2222222 2347788888853 33 789999999999999999999999999999987766 56666664
No 75
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.64 E-value=4.6e-16 Score=136.49 Aligned_cols=178 Identities=13% Similarity=0.230 Sum_probs=122.1
Q ss_pred ccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCccc
Q psy7790 66 RMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCI 137 (367)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i 137 (367)
...+|+++++++.+++.+...+ ..+++. |.++++.+++|+|++++++||+||| |..|+...+. +...+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAI----QQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 87 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHH----HHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEE
Confidence 3467999999999999987666 778888 9999999999999999999999999 6677765442 23445
Q ss_pred cCCCHHHHHHHHhc-------c----CeEEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccc---
Q psy7790 138 LSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPA--- 199 (367)
Q Consensus 138 ~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~--- 199 (367)
..++.+.+.++.+. . ....||.........+.. +++|+++.+.+....+. ...+..-+++.
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~-~~~~~~iViDEah~ 166 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFR-TDKIKMFILDEADE 166 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSC-CTTCCEEEEETHHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcc-hhhCcEEEEcChhH
Confidence 67776665554432 1 223355444333333322 67999999988764332 22222222222
Q ss_pred ----cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCC
Q psy7790 200 ----ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRA 248 (367)
Q Consensus 200 ----~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~ 248 (367)
.+...+..++..++..+|++++|||+++.+..+++.++++|..|.+...
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 2336688888888899999999999999999999999999999877644
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.64 E-value=1.7e-16 Score=138.94 Aligned_cols=176 Identities=17% Similarity=0.263 Sum_probs=126.2
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCccccC
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCILS 139 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i~~ 139 (367)
.+|+++++++.+.+++...+ ..+++. |.++++.+++|+|++++++||+||| |..|+...+. +...+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 79 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEI----QERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITA 79 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEc
Confidence 46999999999999997766 778888 9999999999999999999999999 6777766542 2345667
Q ss_pred CCHHHHHHHHhc-------c----C----eEEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhcccc
Q psy7790 140 LPDQVHDIIRRN-------L----R----ILVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIPA 199 (367)
Q Consensus 140 ~~~~~~~~~~~~-------~----~----i~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~ 199 (367)
++.+.+.++.+. . . ...||.+.......+.. +++|+++.+.+....+ ....+..-+++.
T Consensus 80 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~lViDE 158 (219)
T 1q0u_A 80 PTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQAL-DVHTAHILVVDE 158 (219)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCC-CGGGCCEEEECS
T ss_pred CcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCC-CcCcceEEEEcC
Confidence 777665554432 1 1 12344433222222221 6899999998875432 223333322222
Q ss_pred c-------chHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCC
Q psy7790 200 A-------LSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRA 248 (367)
Q Consensus 200 ~-------l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~ 248 (367)
+ +...+..++..++.++|+++||||+|.++.++++.++.+|..+.+...
T Consensus 159 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 159 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred chHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 1 236788899999889999999999999999999999999999877654
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.63 E-value=2.4e-16 Score=139.05 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=125.0
Q ss_pred ccccCCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCc
Q psy7790 64 WGRMSNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APR 135 (367)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~ 135 (367)
+....+|+.+++++.+.+.+...+ ..+++. |.++++.+++|+|++++++||+||| |..|+...+. +..
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 95 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPV----QLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQI 95 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 344567999999999999997766 678888 9999999999999999999999999 6777765542 234
Q ss_pred cccCCCHHHHHHHHhcc--------C----eEEecCCCCcccccccc----CCCCHHHHHHHHHcCCCCCChhhhhcccc
Q psy7790 136 CILSLPDQVHDIIRRNL--------R----ILVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPA 199 (367)
Q Consensus 136 ~i~~~~~~~~~~~~~~~--------~----i~~~g~~~~~~~~~f~~----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~ 199 (367)
.+..++.+.+.++.+.+ . +..||.........+.. +++|+++.+.+....+ ....+..-+++.
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~-~~~~~~~lViDE 174 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYL-NPGSIRLFILDE 174 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSS-CGGGCCEEEESS
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCc-ccccCCEEEeCC
Confidence 56677766555544321 1 12344433222222222 6899999998765432 222222222222
Q ss_pred --------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 200 --------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 200 --------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.+...+..|++.++..+|+++||||+|..+.+++..++++|..|.+.
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 14577888999999899999999999999999999999999988653
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.63 E-value=4.8e-16 Score=134.54 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=123.7
Q ss_pred CcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc--------CCccc
Q psy7790 69 NISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR--------APRCI 137 (367)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~--------~~~~i 137 (367)
+|+++++++.+.+.+...+ ..+++. |+++++.+++|+|++++++||+||| |..|+...+. +...+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~----Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPI----QAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHH----HHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEE
Confidence 5889999999999997766 788988 9999999999999999999999999 5667665532 23445
Q ss_pred cCCCHHHHHHHHhc-------c--CeEEecCCCCccccccc-----cCCCCHHHHHHHHHcCCCCCChhhhhcccc----
Q psy7790 138 LSLPDQVHDIIRRN-------L--RILVEGDDVPPACCSFR-----LMKLPESLVRALEAKGIKKPTPIQVQGIPA---- 199 (367)
Q Consensus 138 ~~~~~~~~~~~~~~-------~--~i~~~g~~~~~~~~~f~-----~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---- 199 (367)
..++...+.++.+. . ....||.........+. -+++|+++.+.+....+. ...+..-+++.
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~-~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLD-LSRVEVAVLDEADEM 156 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSC-CTTCSEEEEESHHHH
T ss_pred EECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcc-hhhceEEEEEChhHh
Confidence 66776655554432 1 12334443322222211 167999999988764332 23332222222
Q ss_pred ---cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 200 ---ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 200 ---~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.+...+..++..++.++|++++|||+++.+..+++.++++|..|.+.
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 23367888888888899999999999999999999999999988764
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=7e-16 Score=133.47 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=121.5
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc-----CCccccC
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR-----APRCILS 139 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~-----~~~~i~~ 139 (367)
.+|+++++++.+++.+...+ ..+++. |.++++.+++|+|++++++||+||| |..|+...+. +...+..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 78 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPI----QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIV 78 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHH----HHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEe
Confidence 46999999999999997766 778888 9999999999999999999999999 6777765542 2345667
Q ss_pred CCHHHHHHHHhc-------c-Ce----EEecCCCCcccccccc-----CCCCHHHHHHHHHcCCCCCChhhhhccc----
Q psy7790 140 LPDQVHDIIRRN-------L-RI----LVEGDDVPPACCSFRL-----MKLPESLVRALEAKGIKKPTPIQVQGIP---- 198 (367)
Q Consensus 140 ~~~~~~~~~~~~-------~-~i----~~~g~~~~~~~~~f~~-----l~~p~~ll~~l~~~g~~~pt~iQ~~~ip---- 198 (367)
++.+.+.++.+. + .+ ..||.........+.. +++|+++.+.+....+ ....+..-+++
T Consensus 79 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~lViDEah~ 157 (206)
T 1vec_A 79 PTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADK 157 (206)
T ss_dssp SCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCS-CCTTCCEEEEETHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCc-CcccCCEEEEEChHH
Confidence 776655554332 1 11 2234332222222211 6799999988875432 22222222222
Q ss_pred ---ccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 199 ---AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 199 ---~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
..+...+..++..++.++|+++||||+|..+.++++.++++|+.|
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 223377888888898899999999999999999999999999876
No 80
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.62 E-value=6.2e-16 Score=139.24 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=118.9
Q ss_pred cCCcccHh--hhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc---------c
Q psy7790 67 MSNISLLD--QHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---------R 132 (367)
Q Consensus 67 ~~~~~~l~--~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---------~ 132 (367)
..+|..+. +++.+++++...+ ..++++ |.++++.++.|+|++++|+|||||| |..|+...+ .
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 126 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEI----QHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNG 126 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHH----HHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCC
Confidence 45677777 8899999997777 778998 9999999999999999999999999 777776532 1
Q ss_pred CCccccCCCHHHHHHHHhc-------c----CeEEecCCCCccccccc-----cCCCCHHHHHHHHHcCCCCCChhhhhc
Q psy7790 133 APRCILSLPDQVHDIIRRN-------L----RILVEGDDVPPACCSFR-----LMKLPESLVRALEAKGIKKPTPIQVQG 196 (367)
Q Consensus 133 ~~~~i~~~~~~~~~~~~~~-------~----~i~~~g~~~~~~~~~f~-----~l~~p~~ll~~l~~~g~~~pt~iQ~~~ 196 (367)
....+.+++++.+.++.+. . ...+||.........+. -++||+++.+.+..........+..-+
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lV 206 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLV 206 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEE
Confidence 2234567776655554332 1 22334443322222221 168999999998876433334343333
Q ss_pred ccc-------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 197 IPA-------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 197 ip~-------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
++. .+...+..|++.++..+|+++||||+|..+..+++.+++++.
T Consensus 207 iDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 207 IDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 332 244788999999999999999999999999999999987643
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=1.3e-15 Score=133.20 Aligned_cols=173 Identities=16% Similarity=0.202 Sum_probs=122.1
Q ss_pred CCcccHhhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccC-----CccccC
Q psy7790 68 SNISLLDQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRA-----PRCILS 139 (367)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~-----~~~i~~ 139 (367)
.+|+++++++.+.+++...+ ..+++. |.++++.+++|+|++++++||+||| |..|+...+.. ...+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEV----QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHH----HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 56999999999999997766 668888 9999999999999999999999999 66776655432 344566
Q ss_pred CCHHHHHHHHhc---c-----Ce----EEecCCCCccccccc----c--CCCCHHHHHHHHHcCCCCCChhhhhcccc--
Q psy7790 140 LPDQVHDIIRRN---L-----RI----LVEGDDVPPACCSFR----L--MKLPESLVRALEAKGIKKPTPIQVQGIPA-- 199 (367)
Q Consensus 140 ~~~~~~~~~~~~---~-----~i----~~~g~~~~~~~~~f~----~--l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~-- 199 (367)
++.+.+.++.+. + .+ ..||.+.......+. + +++|+++.+.+....+. ...+..-+++.
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~-~~~~~~lViDEah 168 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN-LKHIKHFILDECD 168 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSC-CTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCC-cccCCEEEEcCHH
Confidence 776655554331 1 12 224433322222221 1 67999999888764332 22332222222
Q ss_pred ------cchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 200 ------ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 200 ------~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
.+...+..+++.++..+|+++||||++..+.++++.++++|..|.+
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred HHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 2225677788888889999999999999999999999999988753
No 82
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=133.37 Aligned_cols=179 Identities=15% Similarity=0.217 Sum_probs=120.6
Q ss_pred ccCCcccH----hhhHHHHHHHHhcc-cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccccccc------
Q psy7790 66 RMSNISLL----DQHSELKKMAEAKK-ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR------ 132 (367)
Q Consensus 66 ~~~~~~~l----~~~~~~~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~------ 132 (367)
+..+|..+ ++++.+.+++...+ ..+++. |.++++.+++|+|++++|+||+||| |..|+...+.
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 98 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPI----QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKG 98 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHH----HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSS
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHH----HHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCC
Confidence 34567766 68899999987666 778998 9999999999999999999999999 6778766542
Q ss_pred CCccccCCCHHHHHHHHhcc-------CeEE----ecCCCCccccc--cc----cCCCCHHHHHHHHHcC-CCCCChhhh
Q psy7790 133 APRCILSLPDQVHDIIRRNL-------RILV----EGDDVPPACCS--FR----LMKLPESLVRALEAKG-IKKPTPIQV 194 (367)
Q Consensus 133 ~~~~i~~~~~~~~~~~~~~~-------~i~~----~g~~~~~~~~~--f~----~l~~p~~ll~~l~~~g-~~~pt~iQ~ 194 (367)
+...+..++.+.+.++.+.+ ++.+ +|......... .. -+++|+++.+.+.... ......+..
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 12446677776665554431 2211 11110000000 00 1689999999987642 222223332
Q ss_pred hcccc----------cchHHHHHHHhhc-cCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCC
Q psy7790 195 QGIPA----------ALSEDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRA 248 (367)
Q Consensus 195 ~~ip~----------~l~~~v~~Il~~l-~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~ 248 (367)
-+++. .+.+.+..++..+ +...|+++||||+|.++..+++.++++|+.|.++..
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 23322 2225666666655 457899999999999999999999999999998754
No 83
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.56 E-value=2.2e-15 Score=158.02 Aligned_cols=83 Identities=6% Similarity=0.062 Sum_probs=68.7
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCC------------CeE-EEEecC----------C----------CHH----------
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKG------------VEA-VAIHGG----------K----------DQE---------- 318 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~------------~~~-~~lhg~----------~----------~~~---------- 318 (367)
.++||||+|+..|..++..|...+ +++ .++||+ + ++.
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 469999999999999999997643 555 455642 2 322
Q ss_pred -------------------HHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 319 -------------------ERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 319 -------------------~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
.|..++++|++|+++|||+||.+.+|+|+|.+ +|+++|.|.+...|
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~l 682 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGL 682 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHH
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccce
Confidence 48889999999999999999999999999999 88999999876543
No 84
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.36 E-value=1.7e-12 Score=131.22 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=86.5
Q ss_pred hHHHHHHHHHhh----cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCc---EEEeccc
Q psy7790 268 AKIVYLLECLQK----TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD---VMVATDV 340 (367)
Q Consensus 268 ~k~~~l~~~l~~----~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLVaTd~ 340 (367)
.|+..|..++.. .+.++||||++...++.+...|...|+.+..+||++++.+|..++++|++|... +||+|++
T Consensus 399 ~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 478 (644)
T 1z3i_X 399 GKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKA 478 (644)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGG
T ss_pred hHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEeccc
Confidence 454444444432 356899999999999999999999999999999999999999999999999764 8999999
Q ss_pred ccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 341 ASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 341 ~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
++.|||++++++||+||+|+|+..|
T Consensus 479 ~g~Glnl~~a~~Vi~~d~~wnp~~~ 503 (644)
T 1z3i_X 479 GGCGLNLIGANRLVMFDPDWNPAND 503 (644)
T ss_dssp SCTTCCCTTEEEEEECSCCSSHHHH
T ss_pred ccCCcccccCCEEEEECCCCCccHH
Confidence 9999999999999999999998765
No 85
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.2e-11 Score=128.16 Aligned_cols=99 Identities=20% Similarity=0.382 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCc---EEEeccc
Q psy7790 267 EAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD---VMVATDV 340 (367)
Q Consensus 267 ~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLVaTd~ 340 (367)
..|+..|.++|.. .+.++||||.....++.|..+|...|+.+..+||+++..+|..++++|++|... +|++|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 3466666666654 467899999999999999999999999999999999999999999999997654 9999999
Q ss_pred ccccCCcCCCCEEEEcCCCCCcccc
Q psy7790 341 ASKGLDFEEIKHVINTEAKIKKREH 365 (367)
Q Consensus 341 ~~rGlDi~~v~~VI~yd~P~~~~~Y 365 (367)
++.|||++.+++||+||+|+|+..+
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~ 659 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQAD 659 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHH
T ss_pred ccCCCCccccceEEEecCCCChhhH
Confidence 9999999999999999999998754
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.10 E-value=6.1e-10 Score=112.73 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=54.1
Q ss_pred eEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcc-eEEEEEechhhHHHHHHHHHhh---cCCCeEEeeccHH
Q psy7790 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNV-VQEVEYVKQEAKIVYLLECLQK---TEPPVLIFAEKKQ 292 (367)
Q Consensus 217 Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~---~~~~~iVF~~s~~ 292 (367)
....+|.|...+...|.+.|--+- +.+.+. . +.... ..-.++.....|+..+..-+.. .+.|+||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~V--v~IPTn-~--p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMDV--VVVPTN-R--PVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCCE--EECCCS-S--CCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHhCCCE--EEcCCC-C--CcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 456688888877766666554442 233222 2 11111 2234556678888888776654 4678999999999
Q ss_pred HHHHHHHHHH
Q psy7790 293 DVDAIHEYLL 302 (367)
Q Consensus 293 ~~~~l~~~L~ 302 (367)
..+.|+..|.
T Consensus 455 ~SE~LS~~L~ 464 (997)
T 2ipc_A 455 KSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.09 E-value=6.8e-10 Score=98.23 Aligned_cols=172 Identities=20% Similarity=0.302 Sum_probs=126.0
Q ss_pred CCHHHHHHHHhccCeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEE
Q psy7790 140 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTL 219 (367)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~i 219 (367)
++.+.+..+++...+.+.|.+.|.++.+|.+++++..+++.+.+.||..|+++|.++++.++. ++-++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------g~~~l 70 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALS------------GLDMV 70 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHH------------TCCEE
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEE
Confidence 455678888888999999999999999999999999999999999999999999999988775 45677
Q ss_pred eecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHH
Q psy7790 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHE 299 (367)
Q Consensus 220 l~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~ 299 (367)
+.+.|-+.+...+.-..+.. ...... .. ...++++||.|+|+..+..+++
T Consensus 71 ~~apTGsGKT~~~~l~~l~~-----l~~~~~--~~-----------------------~~~~~~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 71 GVAQTGSGKTLSYLLPAIVH-----INHQPF--LE-----------------------RGDGPICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp EEECTTSCHHHHHHHHHHHH-----HHTSCC--CC-----------------------TTCCCSEEEECSSHHHHHHHHH
T ss_pred EECCCcCHHHHHHHHHHHHH-----HHhccc--cc-----------------------cCCCCEEEEEeCcHHHHHHHHH
Confidence 77777766654432221100 000000 00 0124569999999999988877
Q ss_pred HHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----ccc-ccCCcCCCCEEEEcC
Q psy7790 300 YLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VAS-KGLDFEEIKHVINTE 357 (367)
Q Consensus 300 ~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~-rGlDi~~v~~VI~yd 357 (367)
.+.. .++.+..++|+.+...+...+. . ..+|+|+|+ .+. ..+++.++++||..+
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 121 VAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred HHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 7754 4899999999999877665553 2 489999997 222 346788999998754
No 88
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.80 E-value=2.4e-08 Score=96.09 Aligned_cols=156 Identities=24% Similarity=0.324 Sum_probs=117.8
Q ss_pred cCeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHH
Q psy7790 152 LRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQN 231 (367)
Q Consensus 152 ~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~ 231 (367)
..+.+.|.+.|.++.+|.+++++..+++.|.+.||..||++|.++||.++. ++-+++.+.|=+.+...
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~------------g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISS------------GRDLMACAQTGSGKTAA 109 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSSHHHH
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc------------CCCEEEECCCCCCchHH
Confidence 457788999999999999999999999999999999999999999998775 56678888887776554
Q ss_pred HHHHhc----CCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC---
Q psy7790 232 FARSAL----VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--- 304 (367)
Q Consensus 232 l~~~~l----~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--- 304 (367)
+.-..+ .++.. ....++++||.|+|++.+..+++.+...
T Consensus 110 ~~lpil~~l~~~~~~----------------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 155 (434)
T 2db3_A 110 FLLPILSKLLEDPHE----------------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFE 155 (434)
T ss_dssp HHHHHHHHHHHSCCC----------------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcccc----------------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhcc
Confidence 332211 11000 0012457999999999999998888653
Q ss_pred -CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----cccc-cCCcCCCCEEEEcC
Q psy7790 305 -GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VASK-GLDFEEIKHVINTE 357 (367)
Q Consensus 305 -~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~r-GlDi~~v~~VI~yd 357 (367)
++.+..++|+.+...+...+ ....+|+|+|+ .+.+ .+++.++++||..+
T Consensus 156 ~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 156 SYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp SSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred CCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 57899999999876654433 34689999997 2233 36788899888654
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=90.02 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=76.6
Q ss_pred HHHHHHHHhHhcccccccccccCCcc--ccCccccccc------C-CccccCCCHHHH----HHHHhccC----eEEecC
Q psy7790 97 EEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWR------A-PRCILSLPDQVH----DIIRRNLR----ILVEGD 159 (367)
Q Consensus 97 ~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~------~-~~~i~~~~~~~~----~~~~~~~~----i~~~g~ 159 (367)
.|+++++.+..|++++++|+|||||| +..++..... . ...+..++...+ +.+...+. ..+|..
T Consensus 65 ~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~ 144 (235)
T 3llm_A 65 FESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYS 144 (235)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEE
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEe
Confidence 39999999999999999999999999 3344333210 0 112233444433 33333222 222211
Q ss_pred CCCccccc-c---ccCCCCHHHHHHHHHcCCCCCChhhhhcccccc----h-----HHHHHHHhhccCCceEEeecCCCc
Q psy7790 160 DVPPACCS-F---RLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL----S-----EDVRTIFSFFRGQRQTLLFSATMP 226 (367)
Q Consensus 160 ~~~~~~~~-f---~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l----~-----~~v~~Il~~l~~~~Q~il~SAT~~ 226 (367)
........ - --+++|+++++.+.. ++ ..+..-+++.+- . ..++.++... .++|+++||||++
T Consensus 145 ~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l---~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~ 219 (235)
T 3llm_A 145 VRFESILPRPHASIMFCTVGVLLRKLEA-GI---RGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATID 219 (235)
T ss_dssp ETTEEECCCSSSEEEEEEHHHHHHHHHH-CC---TTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSC
T ss_pred echhhccCCCCCeEEEECHHHHHHHHHh-hh---cCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCC
Confidence 00000000 0 015799999999875 33 223333333331 1 3445555444 4789999999999
Q ss_pred HHHHHHHHHhcCCCE
Q psy7790 227 KKIQNFARSALVKPI 241 (367)
Q Consensus 227 ~~v~~l~~~~l~~~~ 241 (367)
.+. +++.+...|+
T Consensus 220 ~~~--~~~~~~~~pv 232 (235)
T 3llm_A 220 TSM--FCEYFFNCPI 232 (235)
T ss_dssp CHH--HHHHTTSCCC
T ss_pred HHH--HHHHcCCCCE
Confidence 876 5555544444
No 90
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.67 E-value=1e-07 Score=84.21 Aligned_cols=161 Identities=25% Similarity=0.395 Sum_probs=117.8
Q ss_pred HHHHHhccCeEEecCCCCccccccccC----CCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEe
Q psy7790 145 HDIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLL 220 (367)
Q Consensus 145 ~~~~~~~~~i~~~g~~~~~~~~~f~~l----~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il 220 (367)
...+++...+.+.|.+.|.++.+|+++ +++..+++.+.+.||..|+++|.++++.++. ++.+++
T Consensus 4 ~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~l~ 71 (245)
T 3dkp_A 4 INFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH------------GRELLA 71 (245)
T ss_dssp HHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT------------TCCEEE
T ss_pred HHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEE
Confidence 466788889999999999999999986 8999999999999999999999999888775 345677
Q ss_pred ecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh---hcCCCeEEeeccHHHHHHH
Q psy7790 221 FSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAI 297 (367)
Q Consensus 221 ~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~---~~~~~~iVF~~s~~~~~~l 297 (367)
.+.|-+.+...+.-..+ ..+. ..+.++||.++|+..+..+
T Consensus 72 ~a~TGsGKT~~~~l~~l-------------------------------------~~l~~~~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 72 SAPTGSGKTLAFSIPIL-------------------------------------MQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp ECCTTSCHHHHHHHHHH-------------------------------------HHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH-------------------------------------HHHhhcccCCceEEEEeCCHHHHHHH
Confidence 77777666543322211 1111 1234799999999999999
Q ss_pred HHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----ccc---cCCcCCCCEEEEcC
Q psy7790 298 HEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----ASK---GLDFEEIKHVINTE 357 (367)
Q Consensus 298 ~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~~r---GlDi~~v~~VI~yd 357 (367)
++.+... ++.+..++|+.....+ ......+..+|+|+|+- +.+ ++++.++++||..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 115 HRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp HHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred HHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 9888654 7788888876432221 12223567899999962 222 57889999998754
No 91
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.65 E-value=6.3e-07 Score=85.19 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=114.2
Q ss_pred eEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHH
Q psy7790 154 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFA 233 (367)
Q Consensus 154 i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~ 233 (367)
+.+.|.++|.++.+|++++++..+++.|...||..|+++|..++|.++. ++-+++.+.|-+.+...+.
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~------------~~~~lv~a~TGsGKT~~~~ 70 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKE------------KRDLMACAQTGSGKTAAFL 70 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSCHHHHHH
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc------------CCCEEEEcCCCCHHHHHHH
Confidence 5667889999999999999999999999999999999999999987764 4567777888776654333
Q ss_pred HHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHH----hhcCCCeEEeeccHHHHHHHHHHHHh----CC
Q psy7790 234 RSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECL----QKTEPPVLIFAEKKQDVDAIHEYLLL----KG 305 (367)
Q Consensus 234 ~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l----~~~~~~~iVF~~s~~~~~~l~~~L~~----~~ 305 (367)
...+.... ..... .....+...- ....+++||.++|+..+..+++.+.. .+
T Consensus 71 ~~~l~~~~---~~~~~------------------~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (417)
T 2i4i_A 71 LPILSQIY---SDGPG------------------EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR 129 (417)
T ss_dssp HHHHHHHH---HHCCC------------------HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH---hcccc------------------chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC
Confidence 22111000 00000 0000000000 01125799999999999999888864 47
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----cc-ccCCcCCCCEEEEcC
Q psy7790 306 VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----AS-KGLDFEEIKHVINTE 357 (367)
Q Consensus 306 ~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~~-rGlDi~~v~~VI~yd 357 (367)
+.+..++|+.+..+....+ ....+|+|+|+- +. ..+++.++++||..+
T Consensus 130 ~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDE 183 (417)
T 2i4i_A 130 VRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDE 183 (417)
T ss_dssp CCEEEECSSSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESS
T ss_pred ceEEEEECCCCHHHHHHHh----hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEC
Confidence 8999999998876654433 345799999982 22 346778889888654
No 92
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.61 E-value=4.1e-07 Score=79.33 Aligned_cols=155 Identities=19% Similarity=0.344 Sum_probs=105.8
Q ss_pred cCCCCcccccccc-CCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHh
Q psy7790 158 GDDVPPACCSFRL-MKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSA 236 (367)
Q Consensus 158 g~~~~~~~~~f~~-l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~ 236 (367)
+..+|.+..+|.+ ++++..+++.+.+.||..|+++|.++++.++. ++.+++.+.|-+.+...+.-..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~l~~apTGsGKT~~~~l~~ 78 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQ------------GIDLIVVAQTGTGKTLSYLMPG 78 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSCHHHHHHHHH
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHHHHHHHHH
Confidence 4567889999998 79999999999999999999999999888765 4567777888776654433221
Q ss_pred cCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEec
Q psy7790 237 LVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHG 313 (367)
Q Consensus 237 l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg 313 (367)
+..- ... . . ..-...++++||.++|+..+..+++.+.. .++.+..++|
T Consensus 79 ~~~l-----~~~-~---~--------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 129 (228)
T 3iuy_A 79 FIHL-----DSQ-P---I--------------------SREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYG 129 (228)
T ss_dssp HHHH-----C---------------------------------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC
T ss_pred HHHH-----Hhc-c---c--------------------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEEC
Confidence 1100 000 0 0 00011356799999999999999998876 4789999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecc------cccccCCcCCCCEEEEcC
Q psy7790 314 GKDQEERTRSVESFRKGQKDVMVATD------VASKGLDFEEIKHVINTE 357 (367)
Q Consensus 314 ~~~~~~R~~~~~~F~~g~~~vLVaTd------~~~rGlDi~~v~~VI~yd 357 (367)
+.+...+...+ . ...+|+|+|+ .....+++.++++||..+
T Consensus 130 ~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 175 (228)
T 3iuy_A 130 GRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp ------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred CCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccceEEEEEC
Confidence 98765544333 3 3489999997 223467788999998754
No 93
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.56 E-value=9.3e-07 Score=76.52 Aligned_cols=144 Identities=23% Similarity=0.290 Sum_probs=104.4
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 162 PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 162 ~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
+....+|++++++..+++.|.+.||..|+++|.++++.++. ++.+++.+.|-+.+........+.
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~li~~~TGsGKT~~~~~~~~~--- 74 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL------------GMDVLCQAKSGMGKTAVFVLATLQ--- 74 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT------------TCCEEEECCTTSCHHHHHHHHHHH---
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCCchhhhhhHHHHH---
Confidence 34556799999999999999999999999999999887765 345777777776654433222111
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh--hcCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecC
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGG 314 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~--~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~ 314 (367)
.+. ....++||.|+++..+..+++.+... ++.+..++|+
T Consensus 75 ----------------------------------~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~ 120 (220)
T 1t6n_A 75 ----------------------------------QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 120 (220)
T ss_dssp ----------------------------------HCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCC
T ss_pred ----------------------------------hhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCC
Confidence 000 11347999999999999998887654 7899999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEeccc------ccccCCcCCCCEEEEcC
Q psy7790 315 KDQEERTRSVESFRKGQKDVMVATDV------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 315 ~~~~~R~~~~~~F~~g~~~vLVaTd~------~~rGlDi~~v~~VI~yd 357 (367)
.+...+.. .+..+..+|+|+|.- -...+++.++++||..+
T Consensus 121 ~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 121 LSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp SCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred CChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 98766544 445677899999972 12456788999988754
No 94
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.54 E-value=6.5e-07 Score=78.24 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=103.3
Q ss_pred cCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhc
Q psy7790 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSAL 237 (367)
Q Consensus 158 g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l 237 (367)
|...+.+...|++++++..+++.+.+.||..|+++|.++++.++. ++-+++.+.|-+.+...++-..+
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~l~~a~TGsGKT~~~~l~~l 83 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC------------GLDLIVQAKSGTGKTCVFSTIAL 83 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCCcHHHHHHHHHH
Confidence 344566778899999999999999999999999999999887654 35577777777666544322111
Q ss_pred CCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEe
Q psy7790 238 VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIH 312 (367)
Q Consensus 238 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lh 312 (367)
..- .. ...++++||.|+|+..+..+++.+... ++.+..++
T Consensus 84 ~~l-----~~------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 128 (230)
T 2oxc_A 84 DSL-----VL------------------------------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFI 128 (230)
T ss_dssp HHC-----CT------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEEC
T ss_pred HHH-----Hh------------------------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEe
Confidence 000 00 012457999999999999999888653 68899999
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEeccc-----c-cccCCcCCCCEEEEcC
Q psy7790 313 GGKDQEERTRSVESFRKGQKDVMVATDV-----A-SKGLDFEEIKHVINTE 357 (367)
Q Consensus 313 g~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~-~rGlDi~~v~~VI~yd 357 (367)
|+.+..++...+ ...+|+|+|.- + ...+++.++++||.-+
T Consensus 129 g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 129 GGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp TTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred CCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 999877665443 35899999982 1 2456788898888754
No 95
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.52 E-value=6.5e-07 Score=78.63 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=99.3
Q ss_pred CCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcC
Q psy7790 159 DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV 238 (367)
Q Consensus 159 ~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~ 238 (367)
.+.+.++.+|++++++..+++.|...||..|+++|.++++.++. ++.+++.+.|-+.+...++...+.
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~------------~~~~li~apTGsGKT~~~~l~~l~ 90 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK------------GYDVIAQAQSGTGKTATFAISILQ 90 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT------------TCCEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCCcHHHHHHHHHHH
Confidence 45567888999999999999999999999999999999888765 345777788877665443322211
Q ss_pred CCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecC
Q psy7790 239 KPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGG 314 (367)
Q Consensus 239 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~ 314 (367)
.- .. ...+.++||.++|+..+..+++.+... ++.+..++|+
T Consensus 91 ~l-----~~------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 135 (237)
T 3bor_A 91 QL-----EI------------------------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGG 135 (237)
T ss_dssp HC-----CT------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-
T ss_pred HH-----Hh------------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECC
Confidence 00 00 012357999999999999998888654 6788899998
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecc-----cccc-cCCcCCCCEEEEcC
Q psy7790 315 KDQEERTRSVESFRKGQKDVMVATD-----VASK-GLDFEEIKHVINTE 357 (367)
Q Consensus 315 ~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~r-GlDi~~v~~VI~yd 357 (367)
.+... ....+..+..+|+|+|+ .+.+ .+++.++++||..+
T Consensus 136 ~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 136 TNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp ---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred CchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 76443 33455677789999995 3333 46788899888654
No 96
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.51 E-value=4.9e-07 Score=80.15 Aligned_cols=160 Identities=22% Similarity=0.289 Sum_probs=112.0
Q ss_pred cCeEEecCCCCc--cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHH
Q psy7790 152 LRILVEGDDVPP--ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKI 229 (367)
Q Consensus 152 ~~i~~~g~~~~~--~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v 229 (367)
+.+.+.|...+. ++.+|.+++++..+++.|...||..|+++|.++++.++. ++-+++.+.|-+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~------------~~~~l~~a~TGsGKT 74 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILE------------HRDIMACAQTGSGKT 74 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSSHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHH
Confidence 445567777776 889999999999999999999999999999999988775 345677777877665
Q ss_pred HHHHHHhc----CCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-
Q psy7790 230 QNFARSAL----VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK- 304 (367)
Q Consensus 230 ~~l~~~~l----~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~- 304 (367)
..++...+ ..... .. ..-...++++||.|+|+..+..+++.+...
T Consensus 75 ~~~~~~~l~~l~~~~~~------~~------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 75 AAFLIPIINHLVCQDLN------QQ------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp HHHHHHHHHHHHTTCC------------------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccc------cc------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 43322211 11000 00 000112467999999999999888877543
Q ss_pred ---CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----c-cccCCcCCCCEEEEcC
Q psy7790 305 ---GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----A-SKGLDFEEIKHVINTE 357 (367)
Q Consensus 305 ---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~-~rGlDi~~v~~VI~yd 357 (367)
++.+..++|+.+.......+ ....+|+|+|.- + ...+++.++++||..+
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 125 LNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp TTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred ccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 67899999998766544333 356899999982 1 2346788889888654
No 97
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.42 E-value=3.8e-06 Score=74.30 Aligned_cols=142 Identities=25% Similarity=0.358 Sum_probs=103.8
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEE
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~ 242 (367)
.+..+|++++++..+++.|...||..|+++|.++++.++. ++-+++.+.|-+.+...+....
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~------------~~~~lv~a~TGsGKT~~~~~~i------ 101 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ------------GRDIIGLAETGSGKTGAFALPI------ 101 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSCHHHHHHHHH------
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC------------CCCEEEEcCCCCCchhHhHHHH------
Confidence 4567899999999999999999999999999999888764 3456666667665543322111
Q ss_pred EEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCC
Q psy7790 243 INVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKD 316 (367)
Q Consensus 243 i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~ 316 (367)
+..+.. .+.++||.++|+..+..+++.+... ++.+..++|+.+
T Consensus 102 -------------------------------l~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 150 (249)
T 3ber_A 102 -------------------------------LNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGID 150 (249)
T ss_dssp -------------------------------HHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSC
T ss_pred -------------------------------HHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCC
Confidence 111111 2356999999999999888877554 889999999988
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccc-----c--cccCCcCCCCEEEEcC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATDV-----A--SKGLDFEEIKHVINTE 357 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd~-----~--~rGlDi~~v~~VI~yd 357 (367)
...+...+ .+..+|+|+|+- + .+++++.++++||..+
T Consensus 151 ~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 151 SMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp HHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred hHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 76554433 356899999972 2 2467888999998754
No 98
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.41 E-value=3.6e-06 Score=73.62 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=108.2
Q ss_pred HHHHHHHhccCeEEecCCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeec
Q psy7790 143 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFS 222 (367)
Q Consensus 143 ~~~~~~~~~~~i~~~g~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~S 222 (367)
+....+++.+.. ..+.++.+|.+++++..+++.|...||..|+++|.++++.++. ++-+++.+
T Consensus 7 ~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~------------~~~~li~a 69 (236)
T 2pl3_A 7 ESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ------------GKDVLGAA 69 (236)
T ss_dssp HHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHT------------TCCEEEEC
T ss_pred hHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEEe
Confidence 444555554332 1145677899999999999999999999999999999888764 35567777
Q ss_pred CCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHH
Q psy7790 223 ATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLL 302 (367)
Q Consensus 223 AT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~ 302 (367)
.|-+.+...+....+..-. .. . .....+.++||.|+|+..+..+++.+.
T Consensus 70 ~TGsGKT~~~~~~~l~~l~-----~~-~-------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~ 118 (236)
T 2pl3_A 70 KTGSGKTLAFLVPVLEALY-----RL-Q-------------------------WTSTDGLGVLIISPTRELAYQTFEVLR 118 (236)
T ss_dssp CTTSCHHHHHHHHHHHHHH-----HT-T-------------------------CCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH-----hh-c-------------------------ccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 7766654432221110000 00 0 001234679999999999999998886
Q ss_pred hC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----ccc--cCCcCCCCEEEEcC
Q psy7790 303 LK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----ASK--GLDFEEIKHVINTE 357 (367)
Q Consensus 303 ~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~~r--GlDi~~v~~VI~yd 357 (367)
.. ++.+..++|+.+.......+ +..+|+|+|.- +.+ .+++.++++||..+
T Consensus 119 ~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 119 KVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp HHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred HHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 54 48899999998765544333 46899999972 122 46778898888754
No 99
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.38 E-value=1.5e-06 Score=79.23 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=106.6
Q ss_pred CeEEecCCCCc---cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHH
Q psy7790 153 RILVEGDDVPP---ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKI 229 (367)
Q Consensus 153 ~i~~~g~~~~~---~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v 229 (367)
.+.+.+.+.+. .+.+|.+++++..+++.|...||..||++|.++||.++. ...+-+++.+.|-+.+.
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----------~~~~~~l~~a~TGsGKT 145 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA----------EPPQNLIAQSQSGTGKT 145 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTS----------SSCCCEEEECCTTSSHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHc----------CCCCeEEEECCCCCCcc
Confidence 34444444433 457899999999999999999999999999999998885 11255666677877665
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-----
Q psy7790 230 QNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----- 304 (367)
Q Consensus 230 ~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----- 304 (367)
..++-..+..- .. ....+++||.++|++.|..++..+...
T Consensus 146 ~a~~lp~l~~l-----~~------------------------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 146 AAFVLAMLSQV-----EP------------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp HHHHHHHHHHC-----CT------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred HHHHHHHHHhh-----hc------------------------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 54433222100 00 011347999999999999988877543
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc------c-ccCCcCCCCEEEEcC
Q psy7790 305 GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA------S-KGLDFEEIKHVINTE 357 (367)
Q Consensus 305 ~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~------~-rGlDi~~v~~VI~yd 357 (367)
++.+..++|+.....+. ....+|||||+-. . ..+++.++++||..+
T Consensus 191 ~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp TCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred CcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 57888888886543221 3567899999831 2 367889999998754
No 100
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.37 E-value=1.8e-06 Score=74.90 Aligned_cols=146 Identities=21% Similarity=0.303 Sum_probs=99.3
Q ss_pred CCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCC
Q psy7790 160 DVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK 239 (367)
Q Consensus 160 ~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~ 239 (367)
+.++++.+|.+++++..+++.+...||..|+++|.++++.++. ++.+++.+.|-+.+...++-..+..
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE------------GHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc------------CCCEEEECCCCCcHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999887764 3457777777766654432221110
Q ss_pred CEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCC
Q psy7790 240 PITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGK 315 (367)
Q Consensus 240 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~ 315 (367)
- .. ...++++||.|+++..+..+++.+.. .++.+..++|+.
T Consensus 76 l-----~~------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~ 120 (224)
T 1qde_A 76 I-----DT------------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGT 120 (224)
T ss_dssp C-----CT------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--
T ss_pred H-----hc------------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCc
Confidence 0 00 01235799999999999988887754 378899999998
Q ss_pred CHHHHHHHHHHHhcCCCcEEEeccc------ccccCCcCCCCEEEEcC
Q psy7790 316 DQEERTRSVESFRKGQKDVMVATDV------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 316 ~~~~R~~~~~~F~~g~~~vLVaTd~------~~rGlDi~~v~~VI~yd 357 (367)
+..++...+ . ..+|+|+|.- ....+++.++++||..+
T Consensus 121 ~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 121 SFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp --------C---T--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred chHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 765544332 2 3889999972 23457788888888654
No 101
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.33 E-value=5.7e-06 Score=70.60 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=100.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
.+|++++++..+++.+.+.||..|+++|.++++.++. ++-+++.+.|-+.+...+....+...
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~lv~apTGsGKT~~~~~~~~~~~----- 65 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALS------------GRDILARAKNGTGKSGAYLIPLLERL----- 65 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHT------------TCCEEEECCSSSTTHHHHHHHHHHHC-----
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc------------CCCEEEECCCCCchHHHHHHHHHHHh-----
Confidence 4689999999999999999999999999999887764 34566666676655443322211100
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCCHHHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKDQEER 320 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R 320 (367)
.. ...+.++||.|+++..+..+++.+... ++.+..++|+.+..+.
T Consensus 66 ~~------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 115 (206)
T 1vec_A 66 DL------------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD 115 (206)
T ss_dssp CT------------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH
T ss_pred cc------------------------------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH
Confidence 00 012357999999999999988887543 6889999999887654
Q ss_pred HHHHHHHhcCCCcEEEeccc-----cc-ccCCcCCCCEEEEcC
Q psy7790 321 TRSVESFRKGQKDVMVATDV-----AS-KGLDFEEIKHVINTE 357 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd~-----~~-rGlDi~~v~~VI~yd 357 (367)
...+ .+..+|+|+|.- +. ..+++.++++||..+
T Consensus 116 ~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 116 IMRL----DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp HHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred HHhc----CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 3332 456899999982 22 345778899888754
No 102
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.31 E-value=2e-06 Score=74.37 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=100.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 165 ~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
..+|++++++..+++.+.+.||..|+++|.++++.++. ++.+++.+.|-+.+...+....+..-
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~lv~a~TGsGKT~~~~~~~l~~l---- 66 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALR------------GESMVGQSQTGTGKTHAYLLPIMEKI---- 66 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH------------TCCEEEECCSSHHHHHHHHHHHHHHC----
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHHHHHHHHHHHHH----
Confidence 45799999999999999999999999999999888775 35677778887766544332221100
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--------CCeEEEEecCCC
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--------GVEAVAIHGGKD 316 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~ 316 (367)
.. ...+.++||.|+|+..+..+++.+... ++.+..++|+.+
T Consensus 67 -~~------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (219)
T 1q0u_A 67 -KP------------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTD 115 (219)
T ss_dssp -CT------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSH
T ss_pred -Hh------------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCC
Confidence 00 011357999999999999888877543 688999999976
Q ss_pred HHHHHHHHHHHhcCCCcEEEecc-----ccc-ccCCcCCCCEEEEcC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATD-----VAS-KGLDFEEIKHVINTE 357 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd-----~~~-rGlDi~~v~~VI~yd 357 (367)
.....+.+ .+..+|+|+|. .+. ..+++.++++||..+
T Consensus 116 ~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 116 KQKALEKL----NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp HHHTTCCC----SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred HHHHHHHc----CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 54332211 24678999996 222 346778888888654
No 103
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.29 E-value=5.6e-07 Score=88.91 Aligned_cols=86 Identities=15% Similarity=0.270 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEE--ecccccccCCcC
Q psy7790 271 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMV--ATDVASKGLDFE 348 (367)
Q Consensus 271 ~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV--aTd~~~rGlDi~ 348 (367)
..+..++...++++|||++|+...+.++..|.. +. ...+|.. .+|..+++.|+.|. .||+ ||+.+++|||+|
T Consensus 374 ~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 374 ILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 344555556677899999999999999998864 33 3456553 46889999999865 6776 899999999999
Q ss_pred C----CCEEEEcCCCCCc
Q psy7790 349 E----IKHVINTEAKIKK 362 (367)
Q Consensus 349 ~----v~~VI~yd~P~~~ 362 (367)
+ +++||++++|...
T Consensus 448 ~~~~~~~~Vii~~lPf~~ 465 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPN 465 (540)
T ss_dssp ----CEEEEEEESCCCCC
T ss_pred CCcccccEEEEECCCCCC
Confidence 8 8999999999643
No 104
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.27 E-value=6e-06 Score=70.48 Aligned_cols=143 Identities=22% Similarity=0.318 Sum_probs=101.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
+|++++++..+++.+.+.||..|+++|..+++.++. ++.+++.+.|-+.+........+..-.
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~------------~~~~li~~~TGsGKT~~~~~~~~~~l~----- 64 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALE------------GKDLIGQARTGTGKTLAFALPIAERLA----- 64 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSCHHHHHHHHHHHHCC-----
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcC------------CCCEEEECCCCChHHHHHHHHHHHHHh-----
Confidence 588999999999999999999999999999887765 355777777876665433222111000
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSV 324 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~ 324 (367)
... . ...++++||.|+++..+..+++.+... ++++..++|+.+...+...+
T Consensus 65 -~~~---~-----------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 2gxq_A 65 -PSQ---E-----------------------RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117 (207)
T ss_dssp -CCC---C-----------------------TTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH
T ss_pred -hcc---c-----------------------cCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh
Confidence 000 0 012457999999999999999999765 47899999998765544433
Q ss_pred HHHhcCCCcEEEecc-----cc-cccCCcCCCCEEEEcC
Q psy7790 325 ESFRKGQKDVMVATD-----VA-SKGLDFEEIKHVINTE 357 (367)
Q Consensus 325 ~~F~~g~~~vLVaTd-----~~-~rGlDi~~v~~VI~yd 357 (367)
. ...+|+|+|. .+ ...+++.++++||..+
T Consensus 118 ~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 118 L----RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp H----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred h----CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 2 2588999997 22 2356788899888754
No 105
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.23 E-value=4.6e-06 Score=83.57 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=86.0
Q ss_pred CCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEec---------hh----hHHHHHHHHHhhc
Q psy7790 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK---------QE----AKIVYLLECLQKT 280 (367)
Q Consensus 214 ~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~---------~~----~k~~~l~~~l~~~ 280 (367)
..+.+|++|||+++ ...+....--+...+.+...-. ..+ +.+..+. .. .-...+..++...
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~spf~---~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~ 447 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEIFP---PEN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV 447 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCCCSC---GGG--EEEEEECCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCCCCC---HHH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC
Confidence 55789999999986 4444443222233333332211 112 1111111 01 1123345555667
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc--cccccCCcCC--CCEEEEc
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD--VASKGLDFEE--IKHVINT 356 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd--~~~rGlDi~~--v~~VI~y 356 (367)
+++++||++|+...+.++..|.. +... ...+++..+|..++++|+ |+..||+||. .++.|||+++ .+.||..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 88999999999999999998872 2222 556677778999999999 8889999975 8999999985 7799999
Q ss_pred CCCCCc
Q psy7790 357 EAKIKK 362 (367)
Q Consensus 357 d~P~~~ 362 (367)
++|...
T Consensus 524 ~lPfp~ 529 (620)
T 4a15_A 524 GLPFPR 529 (620)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 999753
No 106
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.13 E-value=2.9e-05 Score=72.84 Aligned_cols=140 Identities=24% Similarity=0.305 Sum_probs=102.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
..|+++++++.+++.|...||..|+++|.++++.++. +..+++.+.|-..+........+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~lv~a~TGsGKT~~~~~~~~~------- 68 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL------------GMDVLCQAKSGMGKTAVFVLATLQ------- 68 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT------------TCCEEEECSSCSSHHHHHHHHHHH-------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc------------CCcEEEECCCCCcHHHHHHHHHHH-------
Confidence 4699999999999999999999999999999887765 344666677766554432221110
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHh--hcCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCCCHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGKDQE 318 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~--~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~ 318 (367)
.+. ..+.++||.|+++..+..++..+... ++.+..++|+.+..
T Consensus 69 ------------------------------~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 118 (391)
T 1xti_A 69 ------------------------------QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIK 118 (391)
T ss_dssp ------------------------------HCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHH
T ss_pred ------------------------------hhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHH
Confidence 000 12357999999999999988888654 78999999999876
Q ss_pred HHHHHHHHHhcCCCcEEEecccc------cccCCcCCCCEEEEcC
Q psy7790 319 ERTRSVESFRKGQKDVMVATDVA------SKGLDFEEIKHVINTE 357 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd~~------~rGlDi~~v~~VI~yd 357 (367)
.+.. .+..+..+|+|+|.-. ...+++.++++||..+
T Consensus 119 ~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 119 KDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp HHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred HHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 6554 3456778999999721 2346788899888754
No 107
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.12 E-value=3e-05 Score=69.04 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=97.1
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 167 SFRLMK--LPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 167 ~f~~l~--~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
+|.+++ ++..+++.+...||..|+++|.++++.++. ++-+++.+.|-+.+...+.-..+..
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~------------~~~~lv~a~TGsGKT~~~~l~~l~~----- 115 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE------------GRDLLAAAKTGSGKTLAFLIPAVEL----- 115 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH------------TCCCEECCCTTSCHHHHHHHHHHHH-----
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC------------CCcEEEEccCCCCchHHHHHHHHHH-----
Confidence 455555 999999999999999999999999988775 3456777777666544332211100
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHH--HHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE--CLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQE 318 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~--~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~ 318 (367)
+.. .....+.++||.++|+..+..++..+.. .++.+..++|+....
T Consensus 116 ----------------------------l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 167 (262)
T 3ly5_A 116 ----------------------------IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 167 (262)
T ss_dssp ----------------------------HHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHH
T ss_pred ----------------------------HHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHH
Confidence 000 0012356799999999999998888865 367889999998866
Q ss_pred HHHHHHHHHhcCCCcEEEecc-----ccc--ccCCcCCCCEEEEcC
Q psy7790 319 ERTRSVESFRKGQKDVMVATD-----VAS--KGLDFEEIKHVINTE 357 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd-----~~~--rGlDi~~v~~VI~yd 357 (367)
..... +..| .+|+|+|+ .+. .++++.++++||..+
T Consensus 168 ~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 168 AEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp HHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred HHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 55433 3444 89999996 222 357888999988654
No 108
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.08 E-value=1.3e-05 Score=78.75 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=107.6
Q ss_pred cccccCCCCHHHHHHHHH-cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 166 CSFRLMKLPESLVRALEA-KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~-~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
..|++++++..+.+.|++ .||..|+++|.++|+.++. ++-+++...|-..+.....-..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~------------g~d~lv~apTGsGKTl~~~lp~-------- 61 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLS------------GRDCLVVMPTGGGKSLCYQIPA-------- 61 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT------------TCCEEEECSCHHHHHHHHHHHH--------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc------------CCCEEEECCCCcHHHHHHHHHH--------
Confidence 568899999999999998 7999999999999888775 3456666777555543222111
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSV 324 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~ 324 (367)
+. ..+.+||.++++.-+......|...|+.+..+||+.+..++..++
T Consensus 62 --------------------------------l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~ 108 (523)
T 1oyw_A 62 --------------------------------LL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVM 108 (523)
T ss_dssp --------------------------------HH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred --------------------------------HH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 10 135689999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEeccc------ccccCCcCCCCEEEEcC
Q psy7790 325 ESFRKGQKDVMVATDV------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 325 ~~F~~g~~~vLVaTd~------~~rGlDi~~v~~VI~yd 357 (367)
..+..|..+||++|+- +...+...++.+||..+
T Consensus 109 ~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 109 TGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDE 147 (523)
T ss_dssp HHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESS
T ss_pred HHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeC
Confidence 9999999999999972 11224445666666543
No 109
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.05 E-value=5.8e-05 Score=71.36 Aligned_cols=144 Identities=27% Similarity=0.320 Sum_probs=105.1
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEE
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~ 242 (367)
....+|.+++++..+++.|...||..|+++|.++++.++. ++-+++.+.|-+.+...+....+..-
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~------------~~~~lv~a~TGsGKT~~~~~~~~~~l-- 99 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK------------GRDVIAQSQSGTGKTATFSISVLQCL-- 99 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSSHHHHHHHHHHHTC--
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCCCchHHHHHHHHHHH--
Confidence 4456899999999999999999999999999999888765 34577778887766554433322110
Q ss_pred EEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHH
Q psy7790 243 INVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQE 318 (367)
Q Consensus 243 i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~ 318 (367)
.. ...+.++||.|+++..+..+++.+... ++.+..++|+....
T Consensus 100 ---~~------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 146 (410)
T 2j0s_A 100 ---DI------------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVG 146 (410)
T ss_dssp ---CT------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHH
T ss_pred ---hh------------------------------ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHH
Confidence 00 012457999999999999999888643 68899999999877
Q ss_pred HHHHHHHHHhcCCCcEEEecc-----cccc-cCCcCCCCEEEEcC
Q psy7790 319 ERTRSVESFRKGQKDVMVATD-----VASK-GLDFEEIKHVINTE 357 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd-----~~~r-GlDi~~v~~VI~yd 357 (367)
+....+. ...+|+|+|. .+.+ .++..++++||..+
T Consensus 147 ~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 147 EDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp HHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred HHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 6654442 3468999996 2333 46778888888654
No 110
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.99 E-value=7.6e-05 Score=69.96 Aligned_cols=143 Identities=21% Similarity=0.297 Sum_probs=104.3
Q ss_pred CCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCC
Q psy7790 161 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKP 240 (367)
Q Consensus 161 ~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~ 240 (367)
.......|++++++..+++.+...||..|+++|.++++.++. +..+++.+.|-..+........+.
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~------------~~~~lv~~~TGsGKT~~~~~~~~~-- 81 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE------------GHDVLAQAQSGTGKTGTFSIAALQ-- 81 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH------------TCCEEECCCSSHHHHHHHHHHHHH--
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC------------CCCEEEECCCCChHHHHHHHHHHH--
Confidence 345667899999999999999999999999999999887765 345677777776665433221110
Q ss_pred EEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh--hcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecC
Q psy7790 241 ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGG 314 (367)
Q Consensus 241 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~--~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~ 314 (367)
.+. ..++++||.|+++..+..+++.+.. .++.+..++|+
T Consensus 82 -----------------------------------~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 126 (394)
T 1fuu_A 82 -----------------------------------RIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 126 (394)
T ss_dssp -----------------------------------HCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSS
T ss_pred -----------------------------------HhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCC
Confidence 000 1245799999999999988887754 37899999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEeccc------ccccCCcCCCCEEEEcC
Q psy7790 315 KDQEERTRSVESFRKGQKDVMVATDV------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 315 ~~~~~R~~~~~~F~~g~~~vLVaTd~------~~rGlDi~~v~~VI~yd 357 (367)
.+..++...+. ..+|+|+|.- ....+.+.++++||..+
T Consensus 127 ~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 127 TSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp CCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred CchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 98776655543 4789999962 12346677888888654
No 111
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.98 E-value=7.8e-05 Score=70.17 Aligned_cols=142 Identities=21% Similarity=0.274 Sum_probs=100.3
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEE
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~ 242 (367)
....+|++++++..+++.|.+.||..|+++|..+++.++. ++-+++.+.|-+.+........+.
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~------------~~~~li~a~TGsGKT~~~~~~~~~---- 81 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT------------GRDILARAKNGTGKTAAFVIPTLE---- 81 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH------------TCCEEEECCTTSCHHHHHHHHHHH----
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc------------CCCEEEECCCCcHHHHHHHHHHHH----
Confidence 3456899999999999999999999999999999887765 234666666766554332221110
Q ss_pred EEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh--hcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCC
Q psy7790 243 INVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKD 316 (367)
Q Consensus 243 i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~--~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~ 316 (367)
.+. ..+.++||.|+++..+..+++.+... ++.+..++|+..
T Consensus 82 ---------------------------------~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 128 (400)
T 1s2m_A 82 ---------------------------------KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTN 128 (400)
T ss_dssp ---------------------------------HCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSC
T ss_pred ---------------------------------HHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcc
Confidence 000 12457999999999998888887643 788999999988
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccc-----cc-ccCCcCCCCEEEEcC
Q psy7790 317 QEERTRSVESFRKGQKDVMVATDV-----AS-KGLDFEEIKHVINTE 357 (367)
Q Consensus 317 ~~~R~~~~~~F~~g~~~vLVaTd~-----~~-rGlDi~~v~~VI~yd 357 (367)
....... ..+..+|+|+|.- +. ...++.++++||..+
T Consensus 129 ~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 129 LRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp HHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred hHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 6554332 2467899999962 22 346788899888754
No 112
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.97 E-value=1.3e-06 Score=74.97 Aligned_cols=93 Identities=11% Similarity=0.058 Sum_probs=54.2
Q ss_pred cChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc--------cCCccccCCCHHHHHH-HHhc-----
Q psy7790 88 ESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW--------RAPRCILSLPDQVHDI-IRRN----- 151 (367)
Q Consensus 88 ~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~--------~~~~~i~~~~~~~~~~-~~~~----- 151 (367)
..+.+. |.++++.+++|+++++.++||+||| +..++...+ .....+..++...+.+ +.+.
T Consensus 32 ~~l~~~----Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPY----QMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHH----HHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHH----HHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 345566 9999999999999999999999999 444544332 2234455666655544 3321
Q ss_pred ---cCe--EEecCCCCccccccc-----cCCCCHHHHHHHHHc
Q psy7790 152 ---LRI--LVEGDDVPPACCSFR-----LMKLPESLVRALEAK 184 (367)
Q Consensus 152 ---~~i--~~~g~~~~~~~~~f~-----~l~~p~~ll~~l~~~ 184 (367)
+.+ ..|+.........+. -+++|+.+...+...
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-
T ss_pred ccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhcc
Confidence 111 123332222111111 167899988887653
No 113
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.92 E-value=0.00016 Score=66.82 Aligned_cols=141 Identities=21% Similarity=0.329 Sum_probs=100.9
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 164 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 164 ~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
...+|++++++..+++.|.+.||..|+++|..+++.++. .+.-+++.+.|-+.+........+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~-----------~~~~~l~~~~TGsGKT~~~~~~~~------ 66 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLN-----------DEYNIVAQARTGSGKTASFAIPLI------ 66 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH-----------TCSEEEEECCSSSSHHHHHHHHHH------
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHH------
Confidence 345799999999999999999999999999999887765 224566666776665443322111
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh-hcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ-KTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQE 318 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~ 318 (367)
..+. ..+.++||.|+++..+..+++.+.. .++.+..++|+....
T Consensus 67 -------------------------------~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (367)
T 1hv8_A 67 -------------------------------ELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY 115 (367)
T ss_dssp -------------------------------HHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHH
T ss_pred -------------------------------HHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH
Confidence 1111 1245799999999999988888865 378899999998876
Q ss_pred HHHHHHHHHhcCCCcEEEeccc-----c-cccCCcCCCCEEEEcC
Q psy7790 319 ERTRSVESFRKGQKDVMVATDV-----A-SKGLDFEEIKHVINTE 357 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd~-----~-~rGlDi~~v~~VI~yd 357 (367)
.....+. ..+|+|+|.- + ...+++.++++||..+
T Consensus 116 ~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 116 PQIKALK-----NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp HHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred HHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 5544432 5789999972 1 2236678888888654
No 114
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.91 E-value=3.4e-05 Score=76.82 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=103.2
Q ss_pred cccCCCCHHHHHHHHH-cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 168 FRLMKLPESLVRALEA-KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 168 f~~l~~p~~ll~~l~~-~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
+.+++++..+.+.|++ .||..|+|+|.++|+.++. ++.+++...|-..+...+.-..
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~------------g~d~lv~~pTGsGKTl~~~lpa---------- 80 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMA------------GKEVFLVMPTGGGKSLCYQLPA---------- 80 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT------------TCCEEEECCTTSCTTHHHHHHH----------
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc------------CCCEEEEECCCChHHHHHHHHH----------
Confidence 3357889999999998 4999999999999888765 3456666666544433221111
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVES 326 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~ 326 (367)
+. ..+.+||.++++.-+...+..|...|+.+..++|+++..++..++..
T Consensus 81 ------------------------------l~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~ 129 (591)
T 2v1x_A 81 ------------------------------LC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAE 129 (591)
T ss_dssp ------------------------------HT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHH
T ss_pred ------------------------------HH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHH
Confidence 11 13568999999999999999999999999999999999999999988
Q ss_pred H--hcCCCcEEEeccc-c----------cccCCcCCCCEEEEcC
Q psy7790 327 F--RKGQKDVMVATDV-A----------SKGLDFEEIKHVINTE 357 (367)
Q Consensus 327 F--~~g~~~vLVaTd~-~----------~rGlDi~~v~~VI~yd 357 (367)
+ ..+..+|||+|+- + .+.++..++.+||..+
T Consensus 130 l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDE 173 (591)
T 2v1x_A 130 MVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDE 173 (591)
T ss_dssp HHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEEC
Confidence 8 5789999999982 1 1223455677777544
No 115
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.87 E-value=0.00016 Score=68.18 Aligned_cols=147 Identities=23% Similarity=0.312 Sum_probs=105.2
Q ss_pred CCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcC
Q psy7790 159 DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALV 238 (367)
Q Consensus 159 ~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~ 238 (367)
.+.+....+|.+++++..+++.|.+.||..|+++|.++++.++. ++.+++...|-+.+...+....+
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~------------~~~~lv~a~TGsGKT~~~~~~~~- 99 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIK------------GYDVIAQAQSGTGKTATFAISIL- 99 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT------------TCCEEECCCSCSSSHHHHHHHHH-
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC------------CCCEEEECCCCCcccHHHHHHHH-
Confidence 34456677899999999999999999999999999999877764 34466666666555433222111
Q ss_pred CCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEe
Q psy7790 239 KPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIH 312 (367)
Q Consensus 239 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lh 312 (367)
..+.. .+.++||.++++..+..+++.+... +..+..++
T Consensus 100 ------------------------------------~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 143 (414)
T 3eiq_A 100 ------------------------------------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACI 143 (414)
T ss_dssp ------------------------------------HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECC
T ss_pred ------------------------------------HHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEE
Confidence 11111 2457999999999999888888653 67888899
Q ss_pred cCCCHHHHHHHHHHHhcCCCcEEEecc-----ccc-ccCCcCCCCEEEEcC
Q psy7790 313 GGKDQEERTRSVESFRKGQKDVMVATD-----VAS-KGLDFEEIKHVINTE 357 (367)
Q Consensus 313 g~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~-rGlDi~~v~~VI~yd 357 (367)
|+.+...+ ++.+..+..+|+|+|+ .+. +.++..++++||.-+
T Consensus 144 ~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 144 GGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp CCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred CCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 98775544 4556668899999996 222 346777888888654
No 116
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.80 E-value=0.0001 Score=69.98 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=97.1
Q ss_pred HHHHHHHHc-CCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCC
Q psy7790 176 SLVRALEAK-GIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPS 254 (367)
Q Consensus 176 ~ll~~l~~~-g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~ 254 (367)
.+.+.+++. +| .|+++|.++++.++. ++-+++.+.|-+.+........
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~------------~~~~lv~apTGsGKT~~~l~~~------------------ 57 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQ------------GKSFTMVAPTGVGKTTFGMMTA------------------ 57 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTT------------TCCEECCSCSSSSHHHHHHHHH------------------
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhc------------CCCEEEEeCCCCCHHHHHHHHH------------------
Confidence 344555554 55 799999999988875 3456666677655544211110
Q ss_pred CcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 255 MNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 255 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
+..+ ..++++||.+||+.-+..++..+.. .++++..+||+.+..+|...++.+..|.
T Consensus 58 -------------------~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~ 117 (414)
T 3oiy_A 58 -------------------LWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD 117 (414)
T ss_dssp -------------------HHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC
T ss_pred -------------------HHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC
Confidence 0111 3356799999999999999999988 5889999999999999999999999999
Q ss_pred CcEEEeccccc----ccCCcCCCCEEEEcCC
Q psy7790 332 KDVMVATDVAS----KGLDFEEIKHVINTEA 358 (367)
Q Consensus 332 ~~vLVaTd~~~----rGlDi~~v~~VI~yd~ 358 (367)
.+|+|+|+-.- .-++..++++||..++
T Consensus 118 ~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp CSEEEEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred CCEEEECHHHHHHHHHHhccccccEEEEeCh
Confidence 99999998321 1256678999987654
No 117
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.77 E-value=4.6e-06 Score=75.16 Aligned_cols=133 Identities=7% Similarity=-0.049 Sum_probs=74.1
Q ss_pred ChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc---cCCccccCCCHHHHHHHHhcc---C-------
Q psy7790 89 SAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---RAPRCILSLPDQVHDIIRRNL---R------- 153 (367)
Q Consensus 89 ~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---~~~~~i~~~~~~~~~~~~~~~---~------- 153 (367)
.+.+. |.++++.++.+++.+.+++||+||| +..++.... ..+..+.+++...+.++.+.+ .
T Consensus 113 ~l~~~----Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWY----QKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHH----HHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHH----HHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 45566 9999999999988889999999999 333333221 223456666665555544321 1
Q ss_pred -eEEecCCCCcc--ccccccCCCCHHHHHHHHHcCCCCCChhhhhcccc---cchHHHHHHHhhccCCceEEeecCCCcH
Q psy7790 154 -ILVEGDDVPPA--CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA---ALSEDVRTIFSFFRGQRQTLLFSATMPK 227 (367)
Q Consensus 154 -i~~~g~~~~~~--~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---~l~~~v~~Il~~l~~~~Q~il~SAT~~~ 227 (367)
...+|...... ...---+++++.+.+.... ....+..-+++. +..+.+..++..+...++++++|||.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~----~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKE----WFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp EECSTTCSSTTCCCTTCSEEEECHHHHTTSCGG----GGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred EEEeCCCcchhhhccCCcEEEEchHHHHhhHHH----HHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEEEeCCCCC
Confidence 11233221110 0000115677665433110 001111111111 1236788899999889999999999976
Q ss_pred HH
Q psy7790 228 KI 229 (367)
Q Consensus 228 ~v 229 (367)
..
T Consensus 265 ~~ 266 (282)
T 1rif_A 265 GK 266 (282)
T ss_dssp TS
T ss_pred cc
Confidence 53
No 118
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.75 E-value=0.00024 Score=70.19 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=62.9
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEec--ccccccCCcC-
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVAT--DVASKGLDFE- 348 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT--d~~~rGlDi~- 348 (367)
.+.+++...++.++||++|....+.+++. .+..+..=..+++ +...++.|+.+...||+|| ..++.|||+|
T Consensus 384 ~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 384 YLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 34445555678899999999999999873 3555544334555 3456777854445899998 6899999999
Q ss_pred ----CCCEEEEcCCCCCc
Q psy7790 349 ----EIKHVINTEAKIKK 362 (367)
Q Consensus 349 ----~v~~VI~yd~P~~~ 362 (367)
..+.||..++|...
T Consensus 458 ~~g~~l~~viI~~lPfp~ 475 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPP 475 (551)
T ss_dssp TTEESEEEEEEESCCCCC
T ss_pred cCCcceeEEEEEcCCCCC
Confidence 48999999999743
No 119
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.62 E-value=0.00044 Score=66.91 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=99.0
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 164 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 164 ~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
...+|..++++..+++.|...||..|+++|.+++|.++. ...+-+++.+.|-+.+...+....+..-
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~----------~~~~~~l~~a~TGsGKT~~~~l~il~~l--- 156 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA----------EPPQNLIAQSQSGTGKTAAFVLAMLSQV--- 156 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTS----------BSCCEEEEECCSSSSHHHHHHHHHHTTC---
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHc----------CCCCcEEEEcCCCCchhHHHHHHHHHHH---
Confidence 456889999999999999999999999999999998875 1235667777787777655443332210
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh-----CCCeEEEEecCCCHH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL-----KGVEAVAIHGGKDQE 318 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~ 318 (367)
. . ....+++||.++++..+..++..+.. .++.+....++....
T Consensus 157 -----~---~------------------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (479)
T 3fmp_B 157 -----E---P------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204 (479)
T ss_dssp -----C---T------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC
T ss_pred -----h---h------------------------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc
Confidence 0 0 01134799999999999998777654 256677776664322
Q ss_pred HHHHHHHHHhcCCCcEEEeccccc-------ccCCcCCCCEEEEcC
Q psy7790 319 ERTRSVESFRKGQKDVMVATDVAS-------KGLDFEEIKHVINTE 357 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd~~~-------rGlDi~~v~~VI~yd 357 (367)
.. .....+|+|+|+-.- ..+++.++++||.-+
T Consensus 205 ~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 205 RG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp TT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred cc-------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEEC
Confidence 11 133568999998322 367889999998754
No 120
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.61 E-value=0.00024 Score=66.42 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=98.0
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEE
Q psy7790 164 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI 243 (367)
Q Consensus 164 ~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i 243 (367)
-..+|++++++..+++.+.+.||..|+++|.++++.++. ...+.+++.+.|-..+...+....+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----------~~~~~~lv~a~TGsGKT~~~~~~~~------ 66 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH----------NPPRNMIAQSQSGTGKTAAFSLTML------ 66 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHC----------SSCCCEEEECCTTSCHHHHHHHHHH------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----------CCCCeEEEECCCCCcHHHHHHHHHH------
Confidence 457899999999999999999999999999999887764 1225566667776665443322211
Q ss_pred EeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh--hcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCH
Q psy7790 244 NVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQ 317 (367)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~--~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~ 317 (367)
..+. ..++++||.|+++.-+..+++.+.. .++.+..++++...
T Consensus 67 -------------------------------~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (395)
T 3pey_A 67 -------------------------------TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE 115 (395)
T ss_dssp -------------------------------HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC
T ss_pred -------------------------------HHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchh
Confidence 1111 1245799999999999999888865 36778888877432
Q ss_pred HHHHHHHHHHhcCCCcEEEecccc------cccCCcCCCCEEEEcC
Q psy7790 318 EERTRSVESFRKGQKDVMVATDVA------SKGLDFEEIKHVINTE 357 (367)
Q Consensus 318 ~~R~~~~~~F~~g~~~vLVaTd~~------~rGlDi~~v~~VI~yd 357 (367)
.. .....+|+|+|.-. ...+++.++++||..+
T Consensus 116 ~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 116 KN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp TT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred hh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 21 23467899999732 3456788899988654
No 121
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.56 E-value=0.00053 Score=62.58 Aligned_cols=127 Identities=21% Similarity=0.272 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccC
Q psy7790 173 LPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIM 252 (367)
Q Consensus 173 ~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~ 252 (367)
++..+.+.|.+.||..|++.|..+++.++. +..+++.+.|-..+........+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~------------~~~~lv~~~TGsGKT~~~~~~~~--------------- 53 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ------------GKNVVVRAKTGSGKTAAYAIPIL--------------- 53 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT------------TCCEEEECCTTSSHHHHHHHHHH---------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc------------CCCEEEEcCCCCcHHHHHHHHHH---------------
Confidence 478899999999999999999999877664 34566666676555433221111
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHh
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFR 328 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~ 328 (367)
..+.++||.|+++..+..+++.+.. .++.+..+||+.+...+...+ .
T Consensus 54 --------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 104 (337)
T 2z0m_A 54 --------------------------ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R 104 (337)
T ss_dssp --------------------------HHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T
T ss_pred --------------------------hhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C
Confidence 1256799999999999999888864 368999999999876654433 2
Q ss_pred cCCCcEEEecccc-----c-ccCCcCCCCEEEEcC
Q psy7790 329 KGQKDVMVATDVA-----S-KGLDFEEIKHVINTE 357 (367)
Q Consensus 329 ~g~~~vLVaTd~~-----~-rGlDi~~v~~VI~yd 357 (367)
..+|+|+|.-. . ..+++.++++||..+
T Consensus 105 --~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 137 (337)
T 2z0m_A 105 --NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDE 137 (337)
T ss_dssp --TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEES
T ss_pred --CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEC
Confidence 37899999721 2 235677888888654
No 122
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.55 E-value=0.00073 Score=69.18 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-ccccCCcCCCCEEEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-ASKGLDFEEIKHVIN 355 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-~~rGlDi~~v~~VI~ 355 (367)
+.+++|.++|+.-+..+++.+.. .|+++..+||+++..+|...++.+.+|..+|+|+|.. +...+.+.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 56899999999999888877754 3799999999999999999999999999999999984 335678899999987
Q ss_pred cCC
Q psy7790 356 TEA 358 (367)
Q Consensus 356 yd~ 358 (367)
.+.
T Consensus 497 DEa 499 (780)
T 1gm5_A 497 DEQ 499 (780)
T ss_dssp ESC
T ss_pred ccc
Confidence 654
No 123
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.48 E-value=0.00033 Score=66.00 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=99.4
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEE
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~ 242 (367)
.++.+|++++++..+++.|.+.||..|+++|.++++.++.. .+..+++.+.|-+.+...+....+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~----------~~~~~lv~apTGsGKT~~~~~~~~----- 86 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE----------PPQNLIAQSQSGTGKTAAFVLAML----- 86 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS----------SCCCEEEECCTTSCHHHHHHHHHH-----
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC----------CCCeEEEECCCCchHHHHHHHHHH-----
Confidence 45678999999999999999999999999999998887751 235567777776666543322211
Q ss_pred EEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHh--hcCCCeEEeeccHHHHHHHHHHHHhC-----CCeEEEEecCC
Q psy7790 243 INVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLLK-----GVEAVAIHGGK 315 (367)
Q Consensus 243 i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~--~~~~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~ 315 (367)
..+. ...+++||.++++.-+..+++.+... ++.+...+++.
T Consensus 87 --------------------------------~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 134 (412)
T 3fht_A 87 --------------------------------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134 (412)
T ss_dssp --------------------------------HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTC
T ss_pred --------------------------------HHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCc
Confidence 0111 11347999999999999998887652 57788888775
Q ss_pred CHHHHHHHHHHHhcCCCcEEEecccc------c-ccCCcCCCCEEEEcC
Q psy7790 316 DQEERTRSVESFRKGQKDVMVATDVA------S-KGLDFEEIKHVINTE 357 (367)
Q Consensus 316 ~~~~R~~~~~~F~~g~~~vLVaTd~~------~-rGlDi~~v~~VI~yd 357 (367)
..... .....+|+|+|.-. . ..+++.++++||..+
T Consensus 135 ~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDE 176 (412)
T 3fht_A 135 KLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 176 (412)
T ss_dssp CCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEET
T ss_pred chhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeC
Confidence 53221 24567899999721 1 356778899888654
No 124
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.44 E-value=0.00081 Score=71.62 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=94.9
Q ss_pred cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEE
Q psy7790 184 KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263 (367)
Q Consensus 184 ~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~ 263 (367)
.|| .||++|.+++|.++. ++.+++.+.|-+.+...+.-.
T Consensus 75 ~gf-~pt~iQ~~ai~~il~------------g~dvlv~ApTGSGKTl~~l~~---------------------------- 113 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQ------------GKSFTMVAPTGVGKTTFGMMT---------------------------- 113 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTT------------TCCEEECCSTTCCHHHHHHHH----------------------------
T ss_pred cCC-CCCHHHHHHHHHHHc------------CCCEEEEeCCCCcHHHHHHHH----------------------------
Confidence 577 599999999998875 456777777766654421111
Q ss_pred echhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
++..+ ..++++||.++|+.-|.+++..|.. .++++..+||+++..+|...++.+..|..+|||+|+-
T Consensus 114 ---------il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 114 ---------ALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp ---------HHHHH-TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred ---------HHHHH-hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 11111 3356799999999999999999988 5789999999999999999999999999999999982
Q ss_pred -----ccccCCcCCCCEEEEcCC
Q psy7790 341 -----ASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 341 -----~~rGlDi~~v~~VI~yd~ 358 (367)
+.+ +++.++++||..++
T Consensus 184 rL~~~l~~-l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 184 FVSKNREK-LSQKRFDFVFVDDV 205 (1104)
T ss_dssp HHHHSHHH-HHTSCCSEEEESCH
T ss_pred HHHHHHHh-hcccCcCEEEEeCC
Confidence 222 56778999998765
No 125
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.41 E-value=8.8e-05 Score=64.97 Aligned_cols=125 Identities=14% Similarity=0.015 Sum_probs=68.2
Q ss_pred ChHHHhHHHHHHHHHHhHhcccccccccccCCccc--cCcccccccCCccccCCCHHHHHHHHhc---cCe-----EEec
Q psy7790 89 SAKEKQLKEEEKILRSVAETKALMGVAELAKGIQY--NDPIKTSWRAPRCILSLPDQVHDIIRRN---LRI-----LVEG 158 (367)
Q Consensus 89 ~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~--~~p~~~~~~~~~~i~~~~~~~~~~~~~~---~~i-----~~~g 158 (367)
.+.+. |.++++.++++++++.+++||+|||+ ..++.. ...+..+.+++...+.++.+. +.+ ..++
T Consensus 93 ~l~~~----Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~ 167 (237)
T 2fz4_A 93 SLRDY----QEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGR 167 (237)
T ss_dssp CCCHH----HHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH-SCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSS
T ss_pred CcCHH----HHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 34555 99999999999999999999999993 223322 233445556665555554433 221 1122
Q ss_pred CCCCccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccc---cchHHHHHHHhhccCCceEEeecCCCcH
Q psy7790 159 DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA---ALSEDVRTIFSFFRGQRQTLLFSATMPK 227 (367)
Q Consensus 159 ~~~~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---~l~~~v~~Il~~l~~~~Q~il~SAT~~~ 227 (367)
.....++ -+++++.+...+....- ....-+++. +.....+.++..++ .++++++|||.+.
T Consensus 168 ~~~~~~i----~v~T~~~l~~~~~~~~~----~~~llIiDEaH~l~~~~~~~i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 168 IKELKPL----TVSTYDSAYVNAEKLGN----RFMLLIFDEVHHLPAESYVQIAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp CBCCCSE----EEEEHHHHHHTHHHHTT----TCSEEEEECSSCCCTTTHHHHHHTCC-CSEEEEEEESCC-
T ss_pred CCCcCCE----EEEeHHHHHhhHHHhcc----cCCEEEEECCccCCChHHHHHHHhcc-CCEEEEEecCCCC
Confidence 2111111 14566666655443210 011111111 11244556666665 5788999999864
No 126
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.24 E-value=0.0019 Score=64.03 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccC
Q psy7790 173 LPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIM 252 (367)
Q Consensus 173 ~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~ 252 (367)
++..+++.|...||..|+|+|.++|+.++. ..++-+++...|-+.+...++...+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~----------~~~~dvlv~apTGsGKTl~~~lpil--------------- 82 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILS----------SEDHDVIARAKTGTGKTFAFLIPIF--------------- 82 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHC----------SSSEEEEEECCTTSCHHHHHHHHHH---------------
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----------cCCCeEEEEcCCCcHHHHHHHHHHH---------------
Confidence 999999999999999999999999888772 1244566666676666543322211
Q ss_pred CCCcceEEEEEechhhHHHHHHHHHh------hcCCCeEEeeccHHHHHHHHHHHHh--------CCCeEEEEecCCCHH
Q psy7790 253 PSMNVVQEVEYVKQEAKIVYLLECLQ------KTEPPVLIFAEKKQDVDAIHEYLLL--------KGVEAVAIHGGKDQE 318 (367)
Q Consensus 253 ~~~~i~~~~~~~~~~~k~~~l~~~l~------~~~~~~iVF~~s~~~~~~l~~~L~~--------~~~~~~~lhg~~~~~ 318 (367)
..+. ....++||.++|+..+..++..+.. ..+.+..++|+.+..
T Consensus 83 ----------------------~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~ 140 (579)
T 3sqw_A 83 ----------------------QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR 140 (579)
T ss_dssp ----------------------HHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH
T ss_pred ----------------------HHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH
Confidence 1111 1135799999999999998888865 246788889987654
Q ss_pred HHHHHHHHHhcCCCcEEEeccc-----ccc--cCCcCCCCEEEEcC
Q psy7790 319 ERTRSVESFRKGQKDVMVATDV-----ASK--GLDFEEIKHVINTE 357 (367)
Q Consensus 319 ~R~~~~~~F~~g~~~vLVaTd~-----~~r--GlDi~~v~~VI~yd 357 (367)
. .+..+..+..+|+|||+- +.+ ...+..+++||.-+
T Consensus 141 ~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 141 A---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 183 (579)
T ss_dssp H---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred H---HHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEC
Confidence 3 445556667899999972 222 34677888887644
No 127
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.17 E-value=0.0017 Score=63.98 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCcc
Q psy7790 172 KLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKI 251 (367)
Q Consensus 172 ~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~ 251 (367)
.++..+++.+...||..|+|+|.++|+.++. ..++-+++.+.|-+.+...+....+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~----------~~~~~~lv~apTGsGKTl~~~lpil-------------- 133 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILS----------SEDHDVIARAKTGTGKTFAFLIPIF-------------- 133 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHS----------SSSEEEEEECCTTSCHHHHHHHHHH--------------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----------CCCCeEEEECCCCCCccHHHHHHHH--------------
Confidence 3999999999999999999999999888762 1234566666677666543322111
Q ss_pred CCCCcceEEEEEechhhHHHHHHHHHhh------cCCCeEEeeccHHHHHHHHHHHHh--------CCCeEEEEecCCCH
Q psy7790 252 MPSMNVVQEVEYVKQEAKIVYLLECLQK------TEPPVLIFAEKKQDVDAIHEYLLL--------KGVEAVAIHGGKDQ 317 (367)
Q Consensus 252 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~------~~~~~iVF~~s~~~~~~l~~~L~~--------~~~~~~~lhg~~~~ 317 (367)
..+.. ..+++||.++|+.-+..++..+.. .++.+..++|+.+.
T Consensus 134 -----------------------~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 190 (563)
T 3i5x_A 134 -----------------------QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDF 190 (563)
T ss_dssp -----------------------HHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCH
T ss_pred -----------------------HHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCH
Confidence 11111 134799999999999999888865 24678888998775
Q ss_pred HHHHHHHHHHhcCCCcEEEeccc-----ccc--cCCcCCCCEEEEcC
Q psy7790 318 EERTRSVESFRKGQKDVMVATDV-----ASK--GLDFEEIKHVINTE 357 (367)
Q Consensus 318 ~~R~~~~~~F~~g~~~vLVaTd~-----~~r--GlDi~~v~~VI~yd 357 (367)
.. .+..+..+..+|+|||+- +.+ ...+..+++||.-+
T Consensus 191 ~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 191 RA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp HH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred HH---HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 44 345556667899999983 122 23567788887644
No 128
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.17 E-value=0.00081 Score=68.60 Aligned_cols=137 Identities=15% Similarity=0.233 Sum_probs=95.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.|.++++|..+.+.+...||..|+++|.++++.++. .+.-+++.+.|-+.+.....
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~-----------~~~~~lv~apTGsGKT~~~~------------- 57 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGIL-----------EGKNALISIPTASGKTLIAE------------- 57 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGG-----------GTCEEEEECCGGGCHHHHHH-------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-----------CCCcEEEEcCCccHHHHHHH-------------
Confidence 588899999999999999999999999999988432 13445555666544432211
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEecCCCHHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHGGKDQEERTRS 323 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~ 323 (367)
..+++.+...++++++.++++..+..++..++. .|+++..+||+.....+.
T Consensus 58 ------------------------l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-- 111 (720)
T 2zj8_A 58 ------------------------IAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-- 111 (720)
T ss_dssp ------------------------HHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG--
T ss_pred ------------------------HHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc--
Confidence 111222222356799999999999999998853 489999999998765431
Q ss_pred HHHHhcCCCcEEEecc-----cccccCC-cCCCCEEEEcCC
Q psy7790 324 VESFRKGQKDVMVATD-----VASKGLD-FEEIKHVINTEA 358 (367)
Q Consensus 324 ~~~F~~g~~~vLVaTd-----~~~rGlD-i~~v~~VI~yd~ 358 (367)
.+..+|+|+|+ .+.++.. +.++++||..++
T Consensus 112 -----~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 112 -----LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp -----GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETG
T ss_pred -----cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECC
Confidence 25789999998 2223333 677888886543
No 129
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.0012 Score=67.28 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=97.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEe
Q psy7790 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245 (367)
Q Consensus 166 ~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~ 245 (367)
.+|.++++|..+.+.+...||..|+++|.++++.++. .+.-+++.+.|-+.+.....
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~-----------~~~~~lv~apTGsGKT~~~~------------ 64 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLL-----------EGNRLLLTSPTGSGKTLIAE------------ 64 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTT-----------TTCCEEEECCTTSCHHHHHH------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhc-----------CCCcEEEEcCCCCcHHHHHH------------
Confidence 4689999999999999999999999999999887442 13445555666554433221
Q ss_pred CCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEecCCCHHHHHH
Q psy7790 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHGGKDQEERTR 322 (367)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~ 322 (367)
..+++.+...++++++.++++.-+..++..++. .|+++..++|+....++.
T Consensus 65 -------------------------l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~- 118 (715)
T 2va8_A 65 -------------------------MGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW- 118 (715)
T ss_dssp -------------------------HHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-
T ss_pred -------------------------HHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-
Confidence 112222233356799999999999999888842 388999999997755431
Q ss_pred HHHHHhcCCCcEEEecc-----cccccCC-cCCCCEEEEcCC
Q psy7790 323 SVESFRKGQKDVMVATD-----VASKGLD-FEEIKHVINTEA 358 (367)
Q Consensus 323 ~~~~F~~g~~~vLVaTd-----~~~rGlD-i~~v~~VI~yd~ 358 (367)
.+..+|+|+|+ .+.++.. +.++++||..++
T Consensus 119 ------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 154 (715)
T 2va8_A 119 ------LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDEL 154 (715)
T ss_dssp ------GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSG
T ss_pred ------cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEech
Confidence 23689999998 2223333 678888887553
No 130
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.60 E-value=0.02 Score=61.35 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-cccccCCcCCCCEEEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL----KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-VASKGLDFEEIKHVIN 355 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-~~~rGlDi~~v~~VI~ 355 (367)
+.+++|.|+|+..+...++.+.. .++++..++|..+..++...++.+..|..+|+|+|. .+...+.+.++.+||.
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 45799999999999988888763 368899999999999999999999999999999996 4556688889998886
Q ss_pred cC
Q psy7790 356 TE 357 (367)
Q Consensus 356 yd 357 (367)
-+
T Consensus 732 DE 733 (1151)
T 2eyq_A 732 DE 733 (1151)
T ss_dssp ES
T ss_pred ec
Confidence 54
No 131
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=96.58 E-value=0.0084 Score=63.69 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=85.3
Q ss_pred HcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEE
Q psy7790 183 AKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262 (367)
Q Consensus 183 ~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~ 262 (367)
..||. | ++|.++||.++. ++-+++.+.|-+.+.. ++-..
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~------------g~dvlv~apTGSGKTl-~~lp~-------------------------- 91 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILR------------KESFAATAPTGVGKTS-FGLAM-------------------------- 91 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHT------------TCCEECCCCBTSCSHH-HHHHH--------------------------
T ss_pred hcCCC-H-HHHHHHHHHHHh------------CCCEEEEcCCCCCHHH-HHHHH--------------------------
Confidence 47999 9 999999998875 3456666666555443 21111
Q ss_pred EechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CC----eEEEEecCCCHHHHHHHHHHHhcCCCcE
Q psy7790 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GV----EAVAIHGGKDQEERTRSVESFRKGQKDV 334 (367)
Q Consensus 263 ~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~R~~~~~~F~~g~~~v 334 (367)
+..+...++++||.++|+..+.+++..+... ++ .+..+||+.+...+....+.+++ .+|
T Consensus 92 -----------l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~I 158 (1054)
T 1gku_B 92 -----------SLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKI 158 (1054)
T ss_dssp -----------HHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSE
T ss_pred -----------HHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCE
Confidence 1111223568999999999999988888543 56 89999999999988888887777 999
Q ss_pred EEeccc-ccccCC-cCCCCEEEEcC
Q psy7790 335 MVATDV-ASKGLD-FEEIKHVINTE 357 (367)
Q Consensus 335 LVaTd~-~~rGlD-i~~v~~VI~yd 357 (367)
+|+|+- +..-+. +.++++||..+
T Consensus 159 lV~TP~~L~~~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 159 VITTTQFLSKHYRELGHFDFIFVDD 183 (1054)
T ss_dssp EEEEHHHHHHCSTTSCCCSEEEESC
T ss_pred EEEcHHHHHHHHHHhccCCEEEEeC
Confidence 999982 111111 56888888755
No 132
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.55 E-value=0.0024 Score=64.84 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=92.1
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEE
Q psy7790 167 SFRLMK--LPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244 (367)
Q Consensus 167 ~f~~l~--~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~ 244 (367)
+|++++ +|..+.+.+.+.||..|+++|.++++.++. +.-+++.+.|-+.+......
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~------------~~~~lv~apTGsGKT~~~~l---------- 59 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFS------------GKNLLLAMPTAAGKTLLAEM---------- 59 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTT------------CSCEEEECSSHHHHHHHHHH----------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhC------------CCcEEEEcCCccHHHHHHHH----------
Confidence 466777 899999999999999999999999887553 34556666665544332211
Q ss_pred eCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh---CCCeEEEEecCCCHHHHH
Q psy7790 245 VGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL---KGVEAVAIHGGKDQEERT 321 (367)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~ 321 (367)
.+++.+. .++++++.++++.-+..++..++. .|+++..++|+....++
T Consensus 60 ---------------------------~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~- 110 (702)
T 2p6r_A 60 ---------------------------AMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE- 110 (702)
T ss_dssp ---------------------------HHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-
T ss_pred ---------------------------HHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-
Confidence 1111111 256899999999999999998843 37899999999765443
Q ss_pred HHHHHHhcCCCcEEEecc-----cccccCC-cCCCCEEEEcCC
Q psy7790 322 RSVESFRKGQKDVMVATD-----VASKGLD-FEEIKHVINTEA 358 (367)
Q Consensus 322 ~~~~~F~~g~~~vLVaTd-----~~~rGlD-i~~v~~VI~yd~ 358 (367)
..+..+|+|+|+ .+.++.. +.++++||..++
T Consensus 111 ------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 111 ------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp ------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred ------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 135789999997 3333433 778999987654
No 133
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.54 E-value=0.0082 Score=54.48 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=67.6
Q ss_pred chhhHHHHHHHH---HhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc
Q psy7790 265 KQEAKIVYLLEC---LQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 265 ~~~~k~~~l~~~---l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
....|+..|-++ +...+.+++||++.....+-+..+|...|+++.-+-|.....+ .+. .++...+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCC
Confidence 345565555444 4556778999999999999999999999999999999855432 221 24555565556666
Q ss_pred cccCC-----cCCCCEEEEcCCCCCcc
Q psy7790 342 SKGLD-----FEEIKHVINTEAKIKKR 363 (367)
Q Consensus 342 ~rGlD-----i~~v~~VI~yd~P~~~~ 363 (367)
+-|++ ....+.||-||.=+|+.
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~ 207 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTS 207 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTT
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCC
Confidence 66675 67899999999987775
No 134
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.22 E-value=0.011 Score=59.70 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=81.6
Q ss_pred HHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcce
Q psy7790 179 RALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVV 258 (367)
Q Consensus 179 ~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~ 258 (367)
..+...||..|+++|..+++.++. ++-+++...|-..+.......
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~------------g~~~iv~~~TGsGKTl~~~~~----------------------- 48 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMK------------GKNTIICAPTGCGKTFVSLLI----------------------- 48 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHT------------TCCEEEECCTTSSHHHHHHHH-----------------------
T ss_pred CcccccCCCCccHHHHHHHHHHHc------------CCCEEEEcCCCchHHHHHHHH-----------------------
Confidence 456678999999999999887764 345677777765554322211
Q ss_pred EEEEEechhhHHHHHHHHHhhc----CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 259 QEVEYVKQEAKIVYLLECLQKT----EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 259 ~~~~~~~~~~k~~~l~~~l~~~----~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
++..+... ++++||.++|+..+......+... ++.+..++|+.+...+...+ ..
T Consensus 49 --------------i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~- 110 (696)
T 2ykg_A 49 --------------CEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---VE- 110 (696)
T ss_dssp --------------HHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---HH-
T ss_pred --------------HHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---cc-
Confidence 11111111 267999999999988888887654 89999999998654332222 22
Q ss_pred CCcEEEeccc-----cccc-C-CcCCCCEEEEcCC
Q psy7790 331 QKDVMVATDV-----ASKG-L-DFEEIKHVINTEA 358 (367)
Q Consensus 331 ~~~vLVaTd~-----~~rG-l-Di~~v~~VI~yd~ 358 (367)
..+|+|+|+- +.+| + ++.++++||.-++
T Consensus 111 ~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEa 145 (696)
T 2ykg_A 111 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 145 (696)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETG
T ss_pred CCCEEEECHHHHHHHHhcCcccccccccEEEEeCC
Confidence 4899999982 2233 4 6788899887553
No 135
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.17 E-value=0.022 Score=58.72 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=76.3
Q ss_pred cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEE
Q psy7790 184 KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263 (367)
Q Consensus 184 ~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~ 263 (367)
.|+..|+++|..+++.++. ++.+++...|-+.+.......
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~------------~~~~ll~~~TGsGKTl~~~~~---------------------------- 283 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAIN------------GKNALICAPTGSGKTFVSILI---------------------------- 283 (797)
T ss_dssp ----CCCHHHHHHHHHHHT------------TCCEEEECCTTSCHHHHHHHH----------------------------
T ss_pred cCCCCCCHHHHHHHHHHHh------------CCCEEEEeCCCChHHHHHHHH----------------------------
Confidence 4688899999998887754 345677777766554332211
Q ss_pred echhhHHHHHHHHHhhc----CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEE
Q psy7790 264 VKQEAKIVYLLECLQKT----EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVM 335 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~~----~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 335 (367)
++..+... ++++||.|+++..+..++..+... ++.+..+||+.+...+...+. +..+|+
T Consensus 284 ---------i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iv 350 (797)
T 4a2q_A 284 ---------CEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDII 350 (797)
T ss_dssp ---------HHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEE
T ss_pred ---------HHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEE
Confidence 11112221 567999999999998888877654 899999999987665433331 358899
Q ss_pred Eeccc-----cccc-C-CcCCCCEEEEcCC
Q psy7790 336 VATDV-----ASKG-L-DFEEIKHVINTEA 358 (367)
Q Consensus 336 VaTd~-----~~rG-l-Di~~v~~VI~yd~ 358 (367)
|||.- +.++ + .+.++++||.-++
T Consensus 351 v~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 380 (797)
T 4a2q_A 351 VVTPQILVNSFEDGTLTSLSIFTLMIFDEC 380 (797)
T ss_dssp EECHHHHHHHHHSSSCCCGGGCSEEEETTG
T ss_pred EEchHHHHHHHHhccccccccCCEEEEECc
Confidence 99972 2222 4 6778888887554
No 136
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.93 E-value=0.0019 Score=64.56 Aligned_cols=58 Identities=7% Similarity=-0.029 Sum_probs=38.8
Q ss_pred HHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccc---cCCccccCCCHHHHHHHH
Q psy7790 92 EKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSW---RAPRCILSLPDQVHDIIR 149 (367)
Q Consensus 92 ~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~---~~~~~i~~~~~~~~~~~~ 149 (367)
+.|.+-..++++.+.+|+++++.||||+||| |..|++... .+.-.+...+.++..++.
T Consensus 6 ~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~ 68 (620)
T 4a15_A 6 QYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVI 68 (620)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHH
Confidence 4444445566677889999999999999999 777876553 222334555555444443
No 137
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=95.82 E-value=0.0022 Score=63.31 Aligned_cols=51 Identities=10% Similarity=-0.044 Sum_probs=35.7
Q ss_pred HHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCCHHHHHHHHh
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDIIRR 150 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~~~~ 150 (367)
..+...+..|+|+++.||||+||| |..|++. +.++..+..++.++..++.+
T Consensus 13 ~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-~~~~v~i~~pt~~l~~q~~~ 65 (551)
T 3crv_A 13 DKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-VKPKVLFVVRTHNEFYPIYR 65 (551)
T ss_dssp HHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-HCSEEEEEESSGGGHHHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-CCCeEEEEcCCHHHHHHHHH
Confidence 344556778999999999999999 7788776 33444555666555555443
No 138
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.79 E-value=0.026 Score=54.97 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=54.0
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccc-C-CcCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----ASKG-L-DFEE 349 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~~rG-l-Di~~ 349 (367)
++++||.|+|+..+..++..+... ++.+..+||+.+...+...+. +..+|+|+|.- +.++ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 567999999999888888777654 899999999987655433331 24789999982 2222 4 6778
Q ss_pred CCEEEEcCC
Q psy7790 350 IKHVINTEA 358 (367)
Q Consensus 350 v~~VI~yd~ 358 (367)
+++||..++
T Consensus 128 ~~~vViDEa 136 (555)
T 3tbk_A 128 FTLMIFDEC 136 (555)
T ss_dssp CSEEEETTG
T ss_pred CCEEEEECc
Confidence 888887654
No 139
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.75 E-value=0.037 Score=53.99 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=51.5
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccc-C-CcCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----ASKG-L-DFEE 349 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~~rG-l-Di~~ 349 (367)
++++||.|+++..+..++..+... ++.+..+||+.+...+...+. ...+|+|||.- +.+| + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 467999999999998888887654 899999999987665433332 23789999982 2233 4 6788
Q ss_pred CCEEEEcCC
Q psy7790 350 IKHVINTEA 358 (367)
Q Consensus 350 v~~VI~yd~ 358 (367)
+++||..++
T Consensus 131 ~~~vViDEa 139 (556)
T 4a2p_A 131 FTLMIFDEC 139 (556)
T ss_dssp CSEEEEETG
T ss_pred CCEEEEECC
Confidence 999887654
No 140
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.59 E-value=0.02 Score=58.37 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=81.1
Q ss_pred HcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEE
Q psy7790 183 AKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262 (367)
Q Consensus 183 ~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~ 262 (367)
..|| .|+++|..++|.++. ++ |+-+.|=+.+...++-..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~------------G~--Iaea~TGeGKTlaf~LP~~------------------------- 118 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD------------GN--IAEMKTGEGKTLTSTLPVY------------------------- 118 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT------------TS--EEECCTTSCHHHHHHHHHH-------------------------
T ss_pred HcCC-CCcHHHHHhhHHHhC------------CC--EEEccCCcHHHHHHHHHHH-------------------------
Confidence 4799 999999999998875 22 6677776666554433211
Q ss_pred EechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEec
Q psy7790 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVAT 338 (367)
Q Consensus 263 ~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 338 (367)
+..+ .+.+++|.|+|+.-|.++++.+ ...|+++.++.||++..+|.... .++|+|+|
T Consensus 119 -----------l~aL--~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gT 179 (844)
T 1tf5_A 119 -----------LNAL--TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYST 179 (844)
T ss_dssp -----------HHHT--TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEE
T ss_pred -----------HHHH--cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEEC
Confidence 0111 1346999999999998887776 44599999999999987765543 37999999
Q ss_pred c-cc-----------cc-cCCcCCCCEEEEc
Q psy7790 339 D-VA-----------SK-GLDFEEIKHVINT 356 (367)
Q Consensus 339 d-~~-----------~r-GlDi~~v~~VI~y 356 (367)
+ -+ .+ .++..++.++|..
T Consensus 180 pgrlgfD~L~D~m~~~~~~l~lr~~~~lVlD 210 (844)
T 1tf5_A 180 NNELGFDYLRDNMVLYKEQMVQRPLHFAVID 210 (844)
T ss_dssp HHHHHHHHHHHTTCSSGGGCCCCCCCEEEEE
T ss_pred chhhhHHHHHHhhhcchhhhcccCCCEEEEC
Confidence 7 11 11 3666788887754
No 141
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.13 E-value=0.0051 Score=60.45 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=38.1
Q ss_pred ChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCcccccccCCccccCCCHHHHHHHHh
Q psy7790 89 SAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIKTSWRAPRCILSLPDQVHDIIRR 150 (367)
Q Consensus 89 ~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~~~~~~~~~i~~~~~~~~~~~~~ 150 (367)
.+.+.|.+--..+++.+..|+++++.|+||+||| |..|... +.++..+...+..+..++.+
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~-~~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ-LKKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH-HTCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh-CCCcEEEEcCCHHHHHHHHH
Confidence 3455533333344566778999999999999999 7777654 33444455566655554443
No 142
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.12 E-value=0.017 Score=56.26 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred CccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCE
Q psy7790 162 PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPI 241 (367)
Q Consensus 162 ~~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~ 241 (367)
+..+..+...+++..+++.+...||..|+++|.++++.++. . ..+.+++.++|-+.+....+...+
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~--------~--~~~~~ll~apTGsGKT~~~~~~il---- 180 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLS--------N--PPRNMIGQSQSGTGKTAAFALTML---- 180 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHC--------S--SCCCEEEECCSSTTSHHHHHHHHH----
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHc--------C--CCCCEEEECCCCccHHHHHHHHHH----
Confidence 34455566678899999999999999999999999887765 1 236677778887665443222111
Q ss_pred EEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh--cCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCC
Q psy7790 242 TINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGK 315 (367)
Q Consensus 242 ~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~--~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~ 315 (367)
..+.. ..+++||.++++..+..+++.+... ++.+....++.
T Consensus 181 ---------------------------------~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~ 227 (508)
T 3fho_A 181 ---------------------------------SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS 227 (508)
T ss_dssp ---------------------------------HHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-----
T ss_pred ---------------------------------HHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCc
Confidence 11111 1347999999999999999988664 33444434332
Q ss_pred CHHHHHHHHHHHhcCCCcEEEecccc------cccCCcCCCCEEEEcC
Q psy7790 316 DQEERTRSVESFRKGQKDVMVATDVA------SKGLDFEEIKHVINTE 357 (367)
Q Consensus 316 ~~~~R~~~~~~F~~g~~~vLVaTd~~------~rGlDi~~v~~VI~yd 357 (367)
.... .....+|+|+|.-. ...+++.++++||..+
T Consensus 228 ~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 228 VPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp -------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECC
T ss_pred cccc--------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEec
Confidence 2111 13367899999731 2456788999998755
No 143
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.46 E-value=0.068 Score=56.04 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=76.1
Q ss_pred cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEE
Q psy7790 184 KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263 (367)
Q Consensus 184 ~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~ 263 (367)
.++..|+++|..+++.++. ++.+++...|-..+....+...+... .. ..
T Consensus 244 ~~~~~~r~~Q~~ai~~il~------------g~~~ll~a~TGsGKTl~~~~~i~~~l--------~~---~~-------- 292 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAIN------------GKNALICAPTGSGKTFVSILICEHHF--------QN---MP-------- 292 (936)
T ss_dssp ----CCCHHHHHHHHHHHT------------TCCEEEECCTTSCHHHHHHHHHHTTT--------TT---CC--------
T ss_pred cCCCCCCHHHHHHHHHHHc------------CCCEEEEeCCCchHHHHHHHHHHHHH--------Hh---cc--------
Confidence 4678899999998887754 35577777777666544333222110 00 00
Q ss_pred echhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
...++++||.|+++..+..++..|... ++.+..+||+.+...+...+. +..+|+|+|+
T Consensus 293 --------------~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp 354 (936)
T 4a2w_A 293 --------------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (936)
T ss_dssp --------------SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECH
T ss_pred --------------ccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecH
Confidence 011457999999999988887777654 899999999987655433321 2478999997
Q ss_pred c-----cccc-C-CcCCCCEEEEcCC
Q psy7790 340 V-----ASKG-L-DFEEIKHVINTEA 358 (367)
Q Consensus 340 ~-----~~rG-l-Di~~v~~VI~yd~ 358 (367)
- +.++ + .+.++++||.-++
T Consensus 355 ~~L~~~l~~~~~~~l~~~~liViDEa 380 (936)
T 4a2w_A 355 QILVNSFEDGTLTSLSIFTLMIFDEC 380 (936)
T ss_dssp HHHHHHHHSSSCCCGGGCSEEEEETG
T ss_pred HHHHHHHHcCccccccCCCEEEEECc
Confidence 2 2222 3 5677888886543
No 144
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=93.74 E-value=0.3 Score=50.16 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=68.5
Q ss_pred cCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEE
Q psy7790 184 KGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263 (367)
Q Consensus 184 ~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~ 263 (367)
.|+ .|+++|..++|.++. ++ |+-+.|=+.+...++-..
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq------------G~--IaeakTGeGKTLvf~Lp~--------------------------- 113 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE------------GK--IAEMKTGEGKTLVATLAV--------------------------- 113 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT------------TS--EEECCSTHHHHHHHHHHH---------------------------
T ss_pred hCC-CCcHHHHhhcccccC------------Cc--eeeccCCCchHHHHHHHH---------------------------
Confidence 678 899999999998765 22 555666555543332211
Q ss_pred echhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 264 ~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
++..+ .+.+++|.|+|+.-|.+.++.+ ...|+++.++.|+++..+|..+. .++|+|+|+
T Consensus 114 ---------~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 114 ---------ALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp ---------HHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred ---------HHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 11111 2346899999999888777766 45599999999999987776654 389999997
No 145
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.047 Score=58.18 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=88.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeC
Q psy7790 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246 (367)
Q Consensus 167 ~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~ 246 (367)
.|..+.++..+...+...++..|+++|.++++.++. +.-+++...|-+.+..-....
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~------------g~dvLV~ApTGSGKTlva~l~----------- 219 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDR------------GESVLVSAHTSAGKTVVAEYA----------- 219 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTT------------TCCEEEECCSSSHHHHHHHHH-----------
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHc------------CCCEEEECCCCCChHHHHHHH-----------
Confidence 344445555554455556667799999999887754 455677777766654322111
Q ss_pred CCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHH
Q psy7790 247 RAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVES 326 (367)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~ 326 (367)
++..+ ..++++||-++++..+...+..|....-.+..++|+++
T Consensus 220 --------------------------i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~---------- 262 (1108)
T 3l9o_A 220 --------------------------IAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT---------- 262 (1108)
T ss_dssp --------------------------HHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB----------
T ss_pred --------------------------HHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc----------
Confidence 11111 23567999999999999999999876558999999987
Q ss_pred HhcCCCcEEEecc-----cccccC-CcCCCCEEEEcCC
Q psy7790 327 FRKGQKDVMVATD-----VASKGL-DFEEIKHVINTEA 358 (367)
Q Consensus 327 F~~g~~~vLVaTd-----~~~rGl-Di~~v~~VI~yd~ 358 (367)
.++..+|+|+|+ .+.+|- .+.++.+||.-++
T Consensus 263 -~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEa 299 (1108)
T 3l9o_A 263 -INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEV 299 (1108)
T ss_dssp -CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETG
T ss_pred -cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhh
Confidence 356789999995 344443 3678888886543
No 146
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=93.41 E-value=0.32 Score=49.86 Aligned_cols=115 Identities=18% Similarity=0.114 Sum_probs=77.4
Q ss_pred HcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEE
Q psy7790 183 AKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262 (367)
Q Consensus 183 ~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~ 262 (367)
..|+ .|+++|..++|.++. .. |+-..|=..+...++-..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~-------------G~-Iaem~TGeGKTLa~~LP~-------------------------- 145 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHL-------------GN-VAEMKTGEGKTLTCVLPA-------------------------- 145 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHT-------------TE-EEECCTTSCHHHHTHHHH--------------------------
T ss_pred HcCC-CCCHHHHHHHHhHhc-------------CC-EEEecCCCccHHHHHHHH--------------------------
Confidence 3677 899999999998875 22 555666554433222111
Q ss_pred EechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEec
Q psy7790 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVAT 338 (367)
Q Consensus 263 ~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 338 (367)
++..| .+.+++|.|+|+..|.+.++.+ ...|+++.++.|+++..+|.... .++|+++|
T Consensus 146 ----------~l~aL--~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygT 207 (922)
T 1nkt_A 146 ----------YLNAL--AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGT 207 (922)
T ss_dssp ----------HHHHT--TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEE
T ss_pred ----------HHHHH--hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEEC
Confidence 11111 1346999999999888777766 45599999999999987776544 37999999
Q ss_pred cc-c-----c-------ccCCcCCCCEEEEc
Q psy7790 339 DV-A-----S-------KGLDFEEIKHVINT 356 (367)
Q Consensus 339 d~-~-----~-------rGlDi~~v~~VI~y 356 (367)
+- + . ..+...++.++|--
T Consensus 208 pgrlgfDyLrD~m~~~~~~l~lr~l~~lIVD 238 (922)
T 1nkt_A 208 NNEFGFDYLRDNMAHSLDDLVQRGHHYAIVD 238 (922)
T ss_dssp HHHHHHHHHHHTTCSSGGGCCCCCCCEEEET
T ss_pred chHhhHHHHHhhhhccHhhhccCCCCEEEEe
Confidence 72 1 1 13566778877754
No 147
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.76 E-value=0.49 Score=44.61 Aligned_cols=75 Identities=28% Similarity=0.333 Sum_probs=57.4
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHhC-CC---eEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc------cccCCcC
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLLK-GV---EAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA------SKGLDFE 348 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~------~rGlDi~ 348 (367)
..+.++||.|+++..+..++..+... +. .+..+||+....++..... ..+|+|+|.-. ...+...
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 34678999999999999888888765 55 8999999999887665543 46899999721 2246778
Q ss_pred CCCEEEEcCC
Q psy7790 349 EIKHVINTEA 358 (367)
Q Consensus 349 ~v~~VI~yd~ 358 (367)
++++||..++
T Consensus 125 ~~~~vIiDEa 134 (494)
T 1wp9_A 125 DVSLIVFDEA 134 (494)
T ss_dssp SCSEEEEETG
T ss_pred hceEEEEECC
Confidence 8888887543
No 148
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.09 E-value=0.16 Score=50.57 Aligned_cols=127 Identities=6% Similarity=0.030 Sum_probs=66.3
Q ss_pred HHHHHHHHHhHhcccccccccccCCccc----cCcccccc----cCCccccCCCHHHHHHHHhccCeEEec--------C
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQY----NDPIKTSW----RAPRCILSLPDQVHDIIRRNLRILVEG--------D 159 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~----~~p~~~~~----~~~~~i~~~~~~~~~~~~~~~~i~~~g--------~ 159 (367)
+.|+.+++.++.++.+++.+++|+|||+ ..+..... ...-.+.+++...+..+.+..+..... .
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~ 231 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3499999999999999999999999993 23332221 123346788888888776543211100 0
Q ss_pred CCCcccccccc-CCCCHHHHHHHHHcCCCCCChhhhhcccc---cchHHHHHHHhhccCCceEEeecCC
Q psy7790 160 DVPPACCSFRL-MKLPESLVRALEAKGIKKPTPIQVQGIPA---ALSEDVRTIFSFFRGQRQTLLFSAT 224 (367)
Q Consensus 160 ~~~~~~~~f~~-l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~---~l~~~v~~Il~~l~~~~Q~il~SAT 224 (367)
.++....++.. ++.++.... +. .+-..|.+...-+++. +-.+.+..|+..++.+.|++++.-.
T Consensus 232 ~~~~~~~Tih~ll~~~~~~~~-~~-~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 232 RIPEDASTLHRLLGAQPGSQR-LR-HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp SCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECT
T ss_pred ccchhhhhhHhhhccCCCchH-HH-hccCCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcch
Confidence 11112223332 222221111 11 0111121222222222 1126678889999888999987543
No 149
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=87.45 E-value=0.64 Score=38.73 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=48.1
Q ss_pred CCCeEEeeccHHHHHH-HHHHHH---hCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc-----cc-------c
Q psy7790 281 EPPVLIFAEKKQDVDA-IHEYLL---LKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA-----SK-------G 344 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~-l~~~L~---~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~-----~r-------G 344 (367)
.+++||.|+++..+.. +.+.+. ..++.+..++|+.....+...+. +..+|+|+|.-. .+ +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5689999999998877 555443 33789999999865433322221 247899999731 12 2
Q ss_pred CCcCCCCEEEEcCC
Q psy7790 345 LDFEEIKHVINTEA 358 (367)
Q Consensus 345 lDi~~v~~VI~yd~ 358 (367)
+.+.++++||..++
T Consensus 158 ~~~~~~~~iIiDEa 171 (216)
T 3b6e_A 158 VQLSDFSLIIIDEC 171 (216)
T ss_dssp CCGGGCSEEEETTC
T ss_pred cchhcccEEEEECc
Confidence 67788899887654
No 150
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=85.26 E-value=3.8 Score=33.19 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=68.2
Q ss_pred cHHHHHHHHHhcCCCEEEEe-CCCCccCCCCcceEEEEEe-chhhHHHHHHHHHhh---cCCCeEEeeccHHHHHHHHHH
Q psy7790 226 PKKIQNFARSALVKPITINV-GRAGKIMPSMNVVQEVEYV-KQEAKIVYLLECLQK---TEPPVLIFAEKKQDVDAIHEY 300 (367)
Q Consensus 226 ~~~v~~l~~~~l~~~~~i~~-~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~~l~~---~~~~~iVF~~s~~~~~~l~~~ 300 (367)
+.++.+++..++.+...+.. ...+. . -.+..+ +..+-..++.+.+.. ....+-|.|.+...+..+...
T Consensus 8 t~~Il~~An~li~~~~~~~~~~~~G~---~----p~~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~ 80 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAFDRQGD---L----PNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKA 80 (174)
T ss_dssp CHHHHHHHHTTSCC--------CCCC---C----CEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCcccCCCCCCC---C----CEEEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHH
Confidence 46677777777654322211 11111 1 123333 334444445444432 234588999999999999999
Q ss_pred HHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCCEEEEcCC
Q psy7790 301 LLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 301 L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~~VI~yd~ 358 (367)
|...|+.+..+.++-. .....|.|+|--.+.|+.++ +||.+++
T Consensus 81 L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf~---~V~~~~~ 123 (174)
T 3dmn_A 81 LKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEFD---AVIVWNA 123 (174)
T ss_dssp HHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCEE---EEEEETC
T ss_pred HHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCCC---EEEEecC
Confidence 9999999887776531 12347999999999999875 4565554
No 151
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=84.38 E-value=1.8 Score=44.16 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=51.0
Q ss_pred CCeEEeeccHHHHHHHHHHH----HhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-c-----ccc-------
Q psy7790 282 PPVLIFAEKKQDVDAIHEYL----LLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-A-----SKG------- 344 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-~-----~rG------- 344 (367)
.+++|.|+|+..|.++++.+ ...|+++.++.||++...|.... .++|+|+|+- + ..+
T Consensus 116 ~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~~~ 189 (853)
T 2fsf_A 116 KGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSPEE 189 (853)
T ss_dssp SCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGGG
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccHhH
Confidence 35899999999988877766 44599999999999987665433 3799999982 1 122
Q ss_pred CCcCCCCEEEEc
Q psy7790 345 LDFEEIKHVINT 356 (367)
Q Consensus 345 lDi~~v~~VI~y 356 (367)
+...++.++|..
T Consensus 190 ~~~~~l~~lVlD 201 (853)
T 2fsf_A 190 RVQRKLHYALVD 201 (853)
T ss_dssp CCCCSCCEEEES
T ss_pred hcccCCcEEEEC
Confidence 555777777753
No 152
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=82.67 E-value=0.51 Score=47.42 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=50.6
Q ss_pred CCeEEeeccHHHHHHH-HHHHHhCC---CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc------------cccC
Q psy7790 282 PPVLIFAEKKQDVDAI-HEYLLLKG---VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA------------SKGL 345 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l-~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~------------~rGl 345 (367)
+++||.+|++.-+..+ +..|...+ +.+..+||+.+..++...+. +..+|||+|.-. ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999988888 87776553 89999999987655443332 578999999821 2236
Q ss_pred CcCCCCEEEEcCC
Q psy7790 346 DFEEIKHVINTEA 358 (367)
Q Consensus 346 Di~~v~~VI~yd~ 358 (367)
.+.++++||.-++
T Consensus 133 ~~~~~~lvViDEa 145 (699)
T 4gl2_A 133 QLSDFSLIIIDEC 145 (699)
T ss_dssp CGGGCSEEEEESG
T ss_pred ecccCcEEEEECc
Confidence 7788999887554
No 153
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=82.01 E-value=0.4 Score=44.16 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++-++|||||||+.
T Consensus 94 ~plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 94 KDVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 457888999988 468899999999864
No 154
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=81.92 E-value=3.1 Score=35.61 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHhhcCCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-ccccCCc--CCCC
Q psy7790 276 CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-ASKGLDF--EEIK 351 (367)
Q Consensus 276 ~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-~~rGlDi--~~v~ 351 (367)
++...+.+++|+|+++..+..+.+.+...++. +..++|+.. ...+|+|+|.- +.+.++. ..++
T Consensus 128 ~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~~~~~~~ 194 (237)
T 2fz4_A 128 AINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLGNRFM 194 (237)
T ss_dssp HHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHHTTTCS
T ss_pred HHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeHHHHHhhHHHhcccCC
Confidence 33444678999999999999999999888888 999999864 25678888852 1111111 2466
Q ss_pred EEEEcC
Q psy7790 352 HVINTE 357 (367)
Q Consensus 352 ~VI~yd 357 (367)
+||.-+
T Consensus 195 llIiDE 200 (237)
T 2fz4_A 195 LLIFDE 200 (237)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 666544
No 155
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=80.66 E-value=11 Score=27.69 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=31.5
Q ss_pred EEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc
Q psy7790 285 LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 285 iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 329 (367)
+||.+..+-...+...++..|+.+..++++.+...|..-++.|..
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 566666666677777777777777777777777776666666644
No 156
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=80.32 E-value=1.2 Score=33.08 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.1
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 357999999999999999999999999999999954
No 157
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=80.30 E-value=0.5 Score=43.24 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=22.5
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
..++..+++|.+. ++-++|||||||+.
T Consensus 84 ~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 84 LPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred cchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4577888999885 68899999999875
No 158
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.24 E-value=0.52 Score=42.82 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=22.4
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++-++|||||||+.
T Consensus 67 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 67 KKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 457788899988 578899999999864
No 159
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=79.45 E-value=2.2 Score=40.90 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=52.6
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc-ccc--CCcCCCCE
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLK----GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA-SKG--LDFEEIKH 352 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~-~rG--lDi~~v~~ 352 (367)
..+++||.|+++.-+...++.|... +..+..+||+.+..++ ..+..+|+|+|.-. .+. ..+.++.+
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 3458999999999999999999765 3478999999876654 46789999999832 121 34566777
Q ss_pred EEEcC
Q psy7790 353 VINTE 357 (367)
Q Consensus 353 VI~yd 357 (367)
||.-+
T Consensus 229 iIiDE 233 (510)
T 2oca_A 229 MMNDE 233 (510)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 77543
No 160
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.13 E-value=0.59 Score=42.91 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+. ++-++|||||||+.
T Consensus 79 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 79 KPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4577888999874 67899999999864
No 161
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=79.11 E-value=0.58 Score=43.17 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=22.2
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++-++|||||||+.
T Consensus 74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 457788899988 467899999999864
No 162
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=79.02 E-value=0.58 Score=43.28 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=22.2
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+. ++-++|||||||+.
T Consensus 91 ~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4577888999885 67899999999864
No 163
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.73 E-value=0.61 Score=43.09 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=22.1
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+. ++-++|||||||+.
T Consensus 79 ~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 79 EEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4577888999884 67899999999864
No 164
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=78.55 E-value=2.6 Score=39.93 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=48.7
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCHHHHHHHHHHHhcCCCcEEEecccc-cccCC-c-CCCCEEE
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQEERTRSVESFRKGQKDVMVATDVA-SKGLD-F-EEIKHVI 354 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~-~rGlD-i-~~v~~VI 354 (367)
..+.++||.|+++..+..++..|...+++ +..+||+... ..+|+|+|.-. .+-++ + .++++||
T Consensus 131 ~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liI 197 (472)
T 2fwr_A 131 ELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLI 197 (472)
T ss_dssp HHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEE
T ss_pred HcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEE
Confidence 33778999999999999999999888999 9999998752 46899998721 12221 1 3466777
Q ss_pred EcC
Q psy7790 355 NTE 357 (367)
Q Consensus 355 ~yd 357 (367)
..+
T Consensus 198 vDE 200 (472)
T 2fwr_A 198 FDE 200 (472)
T ss_dssp EET
T ss_pred EEC
Confidence 544
No 165
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=78.51 E-value=0.63 Score=42.64 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=22.3
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
..++..+++|.+. ++-++|||||||+.
T Consensus 73 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 73 QPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 4577888999884 68899999999864
No 166
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.40 E-value=0.59 Score=43.77 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=21.9
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
..++..+++|.+ +++-++|||||||+.
T Consensus 144 ~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 144 RPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 457788899987 567899999999864
No 167
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.27 E-value=0.64 Score=42.27 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=22.1
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
..++..+++|.+ +++-++|||||||+.
T Consensus 70 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 70 QALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 357788899988 568899999999864
No 168
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=78.19 E-value=1 Score=41.47 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=22.2
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+. ++-++|||||||+.
T Consensus 78 ~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 78 CPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 5678888999884 67899999999754
No 169
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=78.05 E-value=1.3 Score=32.15 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=31.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 346999999999999999999999999999999853
No 170
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=78.05 E-value=0.6 Score=42.85 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=22.2
Q ss_pred HHHHHhHhcccc--cccccccCCccccC
Q psy7790 100 KILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
.++..+++|.+. ++-++|||||||+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 588889999885 67899999999865
No 171
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.95 E-value=0.65 Score=42.57 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.0
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++-++|||||||+.
T Consensus 67 ~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 67 APIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 457788899987 467899999999864
No 172
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=77.87 E-value=0.66 Score=42.64 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.5
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
..++..+++|.+. ++-++|||||||+.
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4578889999885 67899999999864
No 173
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=77.85 E-value=0.62 Score=42.82 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=22.0
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++-++|||||||+.
T Consensus 70 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 70 KPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 456778889988 467899999999864
No 174
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=77.84 E-value=0.64 Score=43.19 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=22.1
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++-++|||||||+.
T Consensus 124 ~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 124 RPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 457788899987 568899999999864
No 175
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.79 E-value=1.1 Score=41.44 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=22.6
Q ss_pred HHHHHHHhHhccc--ccccccccCCccccC
Q psy7790 98 EEKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
-+.++..+++|.+ +++-++|||||||+.
T Consensus 89 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 89 VSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 3567888899988 468899999999753
No 176
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.79 E-value=0.67 Score=42.68 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.4
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+. ++-++|||||||+.
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4578889999885 67799999999864
No 177
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=77.74 E-value=0.63 Score=42.78 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=22.1
Q ss_pred HHHHHHhHhcccc--cccccccCCccccC
Q psy7790 99 EKILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+. ++-++|||||||+.
T Consensus 95 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 95 KPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4577888999884 68899999999864
No 178
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=77.64 E-value=1.5 Score=31.50 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.1
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 57999999998899999999999999888889864
No 179
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.60 E-value=0.64 Score=42.61 Aligned_cols=26 Identities=8% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHHHHhHhccc--ccccccccCCccccC
Q psy7790 100 KILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
.++..+++|.+ +++-++|||||||+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 57888999988 468899999999864
No 180
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=77.54 E-value=15 Score=36.72 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=59.4
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-C-CeEEEEe--------------------cCC--C
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-G-VEAVAIH--------------------GGK--D 316 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~-~~~~~lh--------------------g~~--~ 316 (367)
+.-+....|...+..++...+.++||.+++...+..++..|+.. + ..+..+- ... +
T Consensus 33 l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~ 112 (664)
T 1c4o_A 33 LLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASIN 112 (664)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCC
T ss_pred EEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccC
Confidence 33445556766777777766778999999999999999999765 2 2333332 233 2
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEeccccccc
Q psy7790 317 ---QEERTRSVESFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 317 ---~~~R~~~~~~F~~g~~~vLVaTd~~~rG 344 (367)
...|..++.++..++-.|+|+|-.+-.|
T Consensus 113 ~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~ 143 (664)
T 1c4o_A 113 PEIERLRHSTTRSLLTRRDVIVVASVSAIYG 143 (664)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEEEGGGCSC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecHHHHhc
Confidence 5679999999988876678877654444
No 181
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=77.32 E-value=1.2 Score=42.30 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHHHhHhccc--ccccccccCCccccC
Q psy7790 98 EEKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 98 Q~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
-+.++..+++|.+ +++-++|||||||+.
T Consensus 125 ~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 125 GEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3567788899988 468899999999864
No 182
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.30 E-value=0.71 Score=43.24 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHHhHhcccc--cccccccCCccccC
Q psy7790 100 KILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
.++..+++|.+. ++-++|||||||+.
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceEe
Confidence 478889999885 67899999999865
No 183
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.45 E-value=0.65 Score=42.92 Aligned_cols=26 Identities=8% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHhHhcccc--cccccccCCccccC
Q psy7790 100 KILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
.++..+++|.+. ++-++|||||||+.
T Consensus 70 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 70 YLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 477888999884 67899999999864
No 184
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=76.37 E-value=1.3 Score=32.38 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 346999999988899999999999999999999843
No 185
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.32 E-value=0.78 Score=43.05 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHhHhcccc--cccccccCCccccC
Q psy7790 100 KILRSVAETKAL--MGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d~--~~~a~TgsGKT~~~ 125 (367)
.++..+++|.+. ++-++|||||||+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 578889999885 67889999999864
No 186
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=76.26 E-value=0.74 Score=42.38 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=19.7
Q ss_pred HHHHHhHh-ccc--ccccccccCCccccC
Q psy7790 100 KILRSVAE-TKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~-g~d--~~~~a~TgsGKT~~~ 125 (367)
.++..++. |.+ +++-++|||||||+.
T Consensus 74 plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 74 PLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 34555664 877 689999999999754
No 187
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.70 E-value=0.81 Score=42.39 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHhHhccc--ccccccccCCccccC
Q psy7790 100 KILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
.++..+++|.+ +++-++|||||||+.
T Consensus 106 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 106 MLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 57888999988 467899999999864
No 188
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=75.34 E-value=1.4 Score=32.39 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 315 (367)
..+++|||.+-..+...+..|...|+++..+.||+
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34699999998889999999999999998888885
No 189
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=75.26 E-value=5.2 Score=39.94 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=55.5
Q ss_pred HHhhcCCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc---ccccCCcCCCC
Q psy7790 276 CLQKTEPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV---ASKGLDFEEIK 351 (367)
Q Consensus 276 ~l~~~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~---~~rGlDi~~v~ 351 (367)
.+...+.++||.++|+..+..+++.+.. .+..+...+|+.. ..+..+|+|+|+- ....++..+++
T Consensus 252 ~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~ 320 (666)
T 3o8b_A 252 AYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYD 320 (666)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCS
T ss_pred HHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCccc
Confidence 3334466899999999999999887743 4777888888854 4678899999982 23457788899
Q ss_pred EEEEcCC
Q psy7790 352 HVINTEA 358 (367)
Q Consensus 352 ~VI~yd~ 358 (367)
+||..++
T Consensus 321 ~lVlDEA 327 (666)
T 3o8b_A 321 IIICDEC 327 (666)
T ss_dssp EEEETTT
T ss_pred EEEEccc
Confidence 9998776
No 190
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=75.02 E-value=0.7 Score=42.96 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHhHhccc--ccccccccCCccccC
Q psy7790 99 EKILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 99 ~~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
+.++..+++|.+ +++-++|||||||+.
T Consensus 88 ~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 88 QPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345677889988 467899999999864
No 191
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=74.94 E-value=3.1 Score=31.64 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCeEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 282 PPVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
.+++||| .+-..+...+..|+..|+++..+.||+.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 5799999 5778888999999999999999999965
No 192
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=74.14 E-value=14 Score=35.29 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=63.9
Q ss_pred eEEEEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecC-------CC-----HHHHHHHH
Q psy7790 258 VQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGG-------KD-----QEERTRSV 324 (367)
Q Consensus 258 ~~~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~-------~~-----~~~R~~~~ 324 (367)
.+.+.-+....|...+..++...+.++||.|++...+..++..|+.. +-++..+-+. .+ ..+|..++
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l 95 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTL 95 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHH
Confidence 45566677788888888888887889999999999999999999864 3344433221 11 24689999
Q ss_pred HHHhcCCCcEEEeccccc
Q psy7790 325 ESFRKGQKDVMVATDVAS 342 (367)
Q Consensus 325 ~~F~~g~~~vLVaTd~~~ 342 (367)
.++.+++..|+|+|-.+-
T Consensus 96 ~~L~~~~~~ivv~sv~al 113 (483)
T 3hjh_A 96 YQLPTMQRGVLIVPVNTL 113 (483)
T ss_dssp HHGGGCCSSEEEEEHHHH
T ss_pred HHHHhCCCCEEEEEHHHH
Confidence 999999888998886443
No 193
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=73.88 E-value=18 Score=38.04 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=51.8
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-----cccc-CCcCCCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-----ASKG-LDFEEIK 351 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-----~~rG-lDi~~v~ 351 (367)
.++++||.++++..+..++..|... ++.+..+||+.+ .+++.+|+|+|+- +.++ ..+.++.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 149 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRDVE 149 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcCCC
Confidence 3567999999999999999999875 779999999975 3467899999972 2233 3466788
Q ss_pred EEEEcCC
Q psy7790 352 HVINTEA 358 (367)
Q Consensus 352 ~VI~yd~ 358 (367)
+||.-++
T Consensus 150 lvViDEa 156 (997)
T 4a4z_A 150 FVIFDEV 156 (997)
T ss_dssp EEEECCT
T ss_pred EEEEECc
Confidence 8876554
No 194
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=73.32 E-value=2.4 Score=31.10 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 457999999999999999999999994 888999853
No 195
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=71.49 E-value=8.4 Score=34.36 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=40.1
Q ss_pred eEEeecc-----------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc
Q psy7790 284 VLIFAEK-----------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 284 ~iVF~~s-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 329 (367)
+|||+|. ..+++.|...|+..|+.|. .+.+++..+-.++++.|..
T Consensus 63 aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 63 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp EEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 8999988 6899999999999999975 5668999999999999965
No 196
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=70.49 E-value=29 Score=25.44 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=44.1
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
+||-+..++.....-+.-+..|+.+...+...+...|..+.+.|++..++|--.+|
T Consensus 82 vivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtvsd 137 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSD 137 (162)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESS
T ss_pred EEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCC
Confidence 45555556666666666688899999999999999999999999998777755444
No 197
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=69.68 E-value=9 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=28.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+. +..+ ||+.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 456999999988899999999999985 6566 7754
No 198
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=69.39 E-value=25 Score=35.02 Aligned_cols=84 Identities=10% Similarity=0.084 Sum_probs=59.3
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC--CCeEEEEe--------------------cCC--C
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK--GVEAVAIH--------------------GGK--D 316 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~~~~lh--------------------g~~--~ 316 (367)
+.-+....|...+..++...+.++||.+++...+..++..|+.. +..+..|- ... +
T Consensus 37 l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~ 116 (661)
T 2d7d_A 37 LLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASIN 116 (661)
T ss_dssp EEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEEC
T ss_pred EECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccC
Confidence 34455566767777777766778999999999999999999765 22344332 111 1
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEeccccccc
Q psy7790 317 ---QEERTRSVESFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 317 ---~~~R~~~~~~F~~g~~~vLVaTd~~~rG 344 (367)
...|..++.++..++-.|+|+|-.+-.|
T Consensus 117 ~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~ 147 (661)
T 2d7d_A 117 DEIDKLRHSATSALFERRDVIIIASVSCIYG 147 (661)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEECGGGGSC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecHHHHcC
Confidence 5689999999988776688887654444
No 199
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=69.19 E-value=4.3 Score=35.50 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=47.1
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCC----CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc-cc--CCcCCCCEE
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKG----VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS-KG--LDFEEIKHV 353 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~-rG--lDi~~v~~V 353 (367)
.+++||.|+++..+....+.|...+ ..+..++|+..... -..+..+|+|+|.-.- +. ..+.++++|
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~v 229 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEE
Confidence 4579999999999999888887654 36778888765322 1225678999998321 11 235566777
Q ss_pred EEcC
Q psy7790 354 INTE 357 (367)
Q Consensus 354 I~yd 357 (367)
|..+
T Consensus 230 IiDE 233 (282)
T 1rif_A 230 MNDE 233 (282)
T ss_dssp EEET
T ss_pred EEEC
Confidence 7543
No 200
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=69.18 E-value=2.7 Score=42.92 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=81.0
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCChhhhhcccccchHHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEE
Q psy7790 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242 (367)
Q Consensus 163 ~~~~~f~~l~~p~~ll~~l~~~g~~~pt~iQ~~~ip~~l~~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~ 242 (367)
.++..|..++++.++.+.+...+ ..|+++|...|+.++. .+.-+++.+.|-+.+...+. .++.
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~-----------~~~~vii~gpTGSGKTtllp-~ll~---- 131 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQ-----------NNQIMVFVGETGSGKTTQIP-QFVL---- 131 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHH-----------HCSEEEEECCTTSSHHHHHH-HHHH----
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHh-----------CCCeEEEECCCCCCHHHHHH-HHHH----
Confidence 35668999999999999999888 7899999988777765 22335666666655433111 1100
Q ss_pred EEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHHH
Q psy7790 243 INVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEER 320 (367)
Q Consensus 243 i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R 320 (367)
...... .+.+++|.++++..+..++..+.. .+..+...+|+....
T Consensus 132 -------------------------------~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~-- 178 (773)
T 2xau_A 132 -------------------------------FDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF-- 178 (773)
T ss_dssp -------------------------------HHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT--
T ss_pred -------------------------------HhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecc--
Confidence 000001 133477788898888877776632 343332222210000
Q ss_pred HHHHHHHhcCCCcEEEecc-----cccccCCcCCCCEEEEcCC
Q psy7790 321 TRSVESFRKGQKDVMVATD-----VASKGLDFEEIKHVINTEA 358 (367)
Q Consensus 321 ~~~~~~F~~g~~~vLVaTd-----~~~rGlDi~~v~~VI~yd~ 358 (367)
+.......+|+++|+ .+-.+..+.++++||..++
T Consensus 179 ----~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEa 217 (773)
T 2xau_A 179 ----ENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEA 217 (773)
T ss_dssp ----EEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSG
T ss_pred ----ccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCc
Confidence 000124567888887 1222445667777776544
No 201
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=68.68 E-value=26 Score=30.18 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=48.3
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH-H----HHHHHhcCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT-R----SVESFRKGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~-~----~~~~F~~g~~~vLVaTd 339 (367)
+...|...+..+++.-.+.+.++.+.+.|...|.++..+..+++..+-. . +.++| |+++|||..-
T Consensus 23 iA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~--G~iDiLVNNA 92 (254)
T 4fn4_A 23 IAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY--SRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH--SCCCEEEECC
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECC
Confidence 3444555666777777788889999999999999999999998755432 2 23333 8999999764
No 202
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=68.40 E-value=3 Score=32.62 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCCeEEeeccH--HHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKK--QDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~--~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++|||.+- ..+...+..|+..|+++..+.||+.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 34699999987 5888999999999999999999953
No 203
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=68.38 E-value=4.2 Score=31.86 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 45799999998888899999999999 5999999974
No 204
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=68.15 E-value=12 Score=27.41 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=31.6
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
...+++|||.+-..+...+..|...|+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 3457999999999999999999999986688899964
No 205
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=66.04 E-value=11 Score=35.40 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=42.3
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc-c----cccCCcCCCCEEE
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV-A----SKGLDFEEIKHVI 354 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~-~----~rGlDi~~v~~VI 354 (367)
.++++||.++|+.-+.+++..|. |+.+..-.+.... -..+...+.++|+- + .+...+.++++||
T Consensus 47 ~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~~~~~~---------~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iV 115 (451)
T 2jlq_A 47 RRLRTLILAPTRVVAAEMEEALR--GLPIRYQTPAVKS---------DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIV 115 (451)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTT--TSCEEECCTTCSC---------CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEE
T ss_pred cCCcEEEECCCHHHHHHHHHHhc--Cceeeeeeccccc---------cCCCCceEEEEChHHHHHHhhCcccccCCCEEE
Confidence 45689999999999999999885 5544332222211 01334457677651 1 1234577888888
Q ss_pred EcCC
Q psy7790 355 NTEA 358 (367)
Q Consensus 355 ~yd~ 358 (367)
..++
T Consensus 116 iDEa 119 (451)
T 2jlq_A 116 MDEA 119 (451)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7654
No 206
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=65.75 E-value=19 Score=30.55 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCC--CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCC-EEEEcC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKG--VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIK-HVINTE 357 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~-~VI~yd 357 (367)
.+.+.|+++|..++++....|...+ -++.++ ..+.++.++...+..+ +|.++ +.|+++
T Consensus 26 d~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~----------------~P~l~~~~i~l~ 86 (227)
T 3gr1_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY----------------YPQLAYYRIHFD 86 (227)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH----------------CTTCCEEEEECS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc----------------CCceEEEEEEcC
Confidence 3468999999999999999998776 455555 5567777777666554 67787 778888
Q ss_pred CCCCccc
Q psy7790 358 AKIKKRE 364 (367)
Q Consensus 358 ~P~~~~~ 364 (367)
-|..|.-
T Consensus 87 ~P~~Pvl 93 (227)
T 3gr1_A 87 EPRKPVF 93 (227)
T ss_dssp STTSCEE
T ss_pred CCCCCEE
Confidence 8887753
No 207
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=64.77 E-value=18 Score=31.64 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+..+++.|...|+..|+.|. .+.+++..+-.++++.|..-
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 55799999999999999965 56789999999999999763
No 208
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=64.76 E-value=2.1 Score=32.55 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=30.1
Q ss_pred CCeEEeeccHHH--HHHHHHHHHhCCCeEEEEecCCC
Q psy7790 282 PPVLIFAEKKQD--VDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~~s~~~--~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
.+++|||.+-.. +...+..|...|+++..+.||+.
T Consensus 72 ~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 72 KTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp SEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 469999998776 78899999999999888999853
No 209
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=64.69 E-value=3.4 Score=31.53 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=31.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457999999988899999999999985 889999964
No 210
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=64.67 E-value=3.3 Score=32.07 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=31.3
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 45799999998888999999999999 6999999953
No 211
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=64.34 E-value=22 Score=27.88 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
|..+++.|...|...|+.+. .|.+++..+-.+.++.|..-.
T Consensus 39 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~d 79 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKED 79 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHhh
Confidence 55689999999999999965 456789999999999997643
No 212
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=63.60 E-value=2.1 Score=43.25 Aligned_cols=26 Identities=4% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHhHhccc--ccccccccCCccccC
Q psy7790 100 KILRSVAETKA--LMGVAELAKGIQYND 125 (367)
Q Consensus 100 ~~i~~i~~g~d--~~~~a~TgsGKT~~~ 125 (367)
.++..+++|.+ +++-++|||||||+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 47888999988 567789999999875
No 213
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=63.26 E-value=3.2 Score=30.45 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=31.0
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 45799999998889999999999999 4889999854
No 214
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=63.07 E-value=17 Score=30.08 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=48.1
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCC--CeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCCCC-EEEEcC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKG--VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIK-HVINTE 357 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~v~-~VI~yd 357 (367)
.+.+.|++++..++++....|...+ -++..+. .+.++.++...+..+ +|.++ +.|+|+
T Consensus 26 D~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~~----------------~P~l~~~~i~l~ 86 (197)
T 3gr0_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDTY----------------YPQLAYYRIHFD 86 (197)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHHH----------------STTCCEEEEECS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHhc----------------CCceeEEEEecC
Confidence 3568999999999999999997665 3444444 556666666665543 67888 888999
Q ss_pred CCCCccc
Q psy7790 358 AKIKKRE 364 (367)
Q Consensus 358 ~P~~~~~ 364 (367)
-|.+|.-
T Consensus 87 ~P~~P~l 93 (197)
T 3gr0_A 87 EPRKPVF 93 (197)
T ss_dssp STTSCEE
T ss_pred CCCCCEE
Confidence 9888753
No 215
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=62.71 E-value=48 Score=27.56 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=54.6
Q ss_pred HHHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCCCcEEEecccc
Q psy7790 272 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQKDVMVATDVA 341 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~vLVaTd~~ 341 (367)
.|..+|...+-..||+| .|.-++...+..+...|+.+..+ .++.++.....+++.++..---+++++++.
T Consensus 133 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~Gy~v~vv~Da~~~~~~~~h~~aL~~m~~~~G~~i~ts~~~ 207 (211)
T 3o94_A 133 DLDIRLRERRVSTVILTGVLTDISVLHTAIDAYNLGYDIEIVKPAVASIWPENHQFALGHFKNTLGAKLVDENLN 207 (211)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTSCCEEECTTSC
T ss_pred hHHHHHHhCCCCeEEEEeeccChHHHHHHHHHHHCCCEEEEechhhcCCCHHHHHHHHHHHHHHCCcEEechhhH
Confidence 36667777777778877 56677888888888899998877 678899999999999998545567777764
No 216
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=62.17 E-value=8 Score=40.71 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=51.6
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-----ccccc-CCcCCCCEE
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-----VASKG-LDFEEIKHV 353 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-----~~~rG-lDi~~v~~V 353 (367)
.+.++||.++++.-+...+..|....-.+..++|+.+. +...+|+|+|. .+.+| ..+.++++|
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~-----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE-----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc-----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 35679999999999999999887654488999999763 23578999997 23334 567788888
Q ss_pred EEcCC
Q psy7790 354 INTEA 358 (367)
Q Consensus 354 I~yd~ 358 (367)
|.-++
T Consensus 197 ViDEa 201 (1010)
T 2xgj_A 197 IFDEV 201 (1010)
T ss_dssp EEETG
T ss_pred EEech
Confidence 87543
No 217
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=61.96 E-value=21 Score=29.06 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=38.4
Q ss_pred eEEeecc-----------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc
Q psy7790 284 VLIFAEK-----------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 284 ~iVF~~s-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 329 (367)
+|||.|. ..+++.|...|...|+.|. ++.+++..+-.++++.|..
T Consensus 46 ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 46 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp EEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred EEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 7887764 4899999999999999975 5678999999999999964
No 218
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=61.40 E-value=3.5 Score=31.77 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|+..|+. +..+.||+.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 456999999988888999999999995 999999953
No 219
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=61.25 E-value=3.3 Score=41.28 Aligned_cols=57 Identities=7% Similarity=-0.088 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhHhccc-ccccccccCCccccCc--cccccc--CCccccCCCHHHHHHHHh
Q psy7790 94 QLKEEEKILRSVAETKA-LMGVAELAKGIQYNDP--IKTSWR--APRCILSLPDQVHDIIRR 150 (367)
Q Consensus 94 ~~~~Q~~~i~~i~~g~d-~~~~a~TgsGKT~~~p--~~~~~~--~~~~i~~~~~~~~~~~~~ 150 (367)
+.+.|.+++..++..++ .++++|-|||||++.- +...+. ..-++.+.++.-++.+..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~e 251 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVE 251 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHH
Confidence 34569999999998777 4788999999994321 111111 223455667655555544
No 220
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=60.90 E-value=29 Score=28.25 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=40.1
Q ss_pred CCeEEeecc--------------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 282 PPVLIFAEK--------------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 282 ~~~iVF~~s--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
+-+|||+|. ..+++.|...|...|+.+..+ -+++..+-...++.|....
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~~d 107 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTVS 107 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTSC
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhhhh
Confidence 348888874 368999999999999997655 5799999999999997643
No 221
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=60.63 E-value=4.9 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 346999999999999999999999985 888899843
No 222
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=59.96 E-value=4.2 Score=31.36 Aligned_cols=35 Identities=6% Similarity=0.125 Sum_probs=30.5
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
.+++|||.+-..+...+..|...|+. +..|.||+.
T Consensus 92 ~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 92 KELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 46999999988999999999999994 888999853
No 223
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=58.81 E-value=3.7 Score=40.70 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHhcccccccccccCCccccCc-ccccc-c-C--CccccCCCHHHHHHHHhc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQYNDP-IKTSW-R-A--PRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-~~~~~-~-~--~~~i~~~~~~~~~~~~~~ 151 (367)
+.|.+++..++.+.-.++++|.|+|||++.- +...+ . + .-.+.+.+..-++.+...
T Consensus 183 ~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~ 243 (624)
T 2gk6_A 183 HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEK 243 (624)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHH
Confidence 4489999998887778999999999994321 11111 1 1 234567777666666543
No 224
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=57.58 E-value=19 Score=31.24 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC---CcEEEecccccccCC
Q psy7790 291 KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ---KDVMVATDVASKGLD 346 (367)
Q Consensus 291 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~---~~vLVaTd~~~rGlD 346 (367)
..+++.|...|+..|+.|. .|.+++..+-.++++.|..-. .+++|+- +++.|..
T Consensus 43 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~-~lsHG~~ 99 (259)
T 3sir_A 43 NVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQNHSDSDCILVA-ILSHGEM 99 (259)
T ss_dssp CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTSCCTTEEEEEEE-EEECTTC
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHhhccCCCEEEEE-EecCCCC
Confidence 3689999999999999965 566899999999999998642 3344433 4556654
No 225
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=57.53 E-value=35 Score=27.22 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
|..+++.|...|...|+.+ .+|.+++..+-...++.|..-
T Consensus 53 t~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 53 THLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 3688999999999999997 556788999999999999654
No 226
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=57.33 E-value=8.4 Score=33.79 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=42.0
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+-+|||.|+..+++.|...|...|+.+.. |.+++..+-...++.|...
T Consensus 44 G~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 44 GICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFACM 91 (272)
T ss_dssp EEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHHTC
T ss_pred eEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHhc
Confidence 34899999999999999999999998754 5689999999999999763
No 227
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=56.68 E-value=31 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=38.9
Q ss_pred eEEeecc-------------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 284 VLIFAEK-------------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 284 ~iVF~~s-------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+|||.|. ..+++.|...|+..|+.|. ++.+++..+-.+++++|..-
T Consensus 35 aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 35 AIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred EEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 7777764 7899999999999999875 56689999999999999764
No 228
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=56.58 E-value=29 Score=27.83 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=38.6
Q ss_pred CeEEeecc--------------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc
Q psy7790 283 PVLIFAEK--------------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 283 ~~iVF~~s--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 329 (367)
-+|||.|. ..+++.|...|...|+.+ .+|.+++..+-...++.|..
T Consensus 35 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 35 LALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp EEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred EEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 37888764 358999999999999987 55678999999999999977
No 229
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=56.17 E-value=4.9 Score=32.31 Aligned_cols=17 Identities=29% Similarity=0.145 Sum_probs=15.1
Q ss_pred hcccccccccccCCccc
Q psy7790 107 ETKALMGVAELAKGIQY 123 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT~ 123 (367)
.|+.++..+++|+|||.
T Consensus 37 ~g~~~~l~G~~G~GKTt 53 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTH 53 (180)
T ss_dssp GCCEEEECCSSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47889999999999994
No 230
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=55.28 E-value=5.8 Score=30.41 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=30.9
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+-......+..|...|+ ++..+.||+.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 45699999998888888999999999 5889999984
No 231
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=54.96 E-value=4.6 Score=38.28 Aligned_cols=54 Identities=7% Similarity=0.042 Sum_probs=33.0
Q ss_pred HHHHHHHhHhc----c-cccccccccCCccccCccccc-c----cCCccccCCCHHHHHHHHhc
Q psy7790 98 EEKILRSVAET----K-ALMGVAELAKGIQYNDPIKTS-W----RAPRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 98 Q~~~i~~i~~g----~-d~~~~a~TgsGKT~~~p~~~~-~----~~~~~i~~~~~~~~~~~~~~ 151 (367)
|++++..++.. + .+++.|+.|||||+..-.... + ...-.+.+.+..-+..++..
T Consensus 30 Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp HHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhh
Confidence 77888776543 4 899999999999943221111 1 11233456676666666543
No 232
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=53.69 E-value=4.8 Score=39.49 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhHhcccccccccccCCccccCc-ccccc---cCCccccCCCHHHHHHHHhc
Q psy7790 95 LKEEEKILRSVAETKALMGVAELAKGIQYNDP-IKTSW---RAPRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-~~~~~---~~~~~i~~~~~~~~~~~~~~ 151 (367)
.+.|+.++..++.++-++..++.|+|||+..- +...+ ...-.+.+++..-+..+...
T Consensus 191 ~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 191 SEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 45599999999999999999999999994321 11111 12233566777777777653
No 233
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=52.86 E-value=38 Score=30.16 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=39.3
Q ss_pred CeEEeecc-------------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 283 PVLIFAEK-------------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 283 ~~iVF~~s-------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
-+|||.|. ..+++.|...|+..|+.|. ++.+++..+-.+++++|..-
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 37888764 7899999999999999875 55689999999999999763
No 234
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=52.30 E-value=6.1 Score=30.56 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=16.2
Q ss_pred hHhcccccccccccCCccc
Q psy7790 105 VAETKALMGVAELAKGIQY 123 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT~ 123 (367)
+..+..++..+++|+|||.
T Consensus 24 ~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HTCSSCEEEEEETTCCHHH
T ss_pred hCCCCcEEEECCCCccHHH
Confidence 4567889999999999993
No 235
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=51.61 E-value=6.2 Score=30.58 Aligned_cols=19 Identities=11% Similarity=-0.092 Sum_probs=16.4
Q ss_pred hHhcccccccccccCCccc
Q psy7790 105 VAETKALMGVAELAKGIQY 123 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT~ 123 (367)
...+..++..+++|+|||.
T Consensus 21 a~~~~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMT 39 (145)
T ss_dssp TTCCSCEEEESSTTSSHHH
T ss_pred hCCCCCEEEECCCCCCHHH
Confidence 4567899999999999993
No 236
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=51.15 E-value=5.4 Score=40.87 Aligned_cols=56 Identities=7% Similarity=-0.004 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhHhcccccccccccCCccccCc-ccccc---c-CCccccCCCHHHHHHHHh
Q psy7790 95 LKEEEKILRSVAETKALMGVAELAKGIQYNDP-IKTSW---R-APRCILSLPDQVHDIIRR 150 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-~~~~~---~-~~~~i~~~~~~~~~~~~~ 150 (367)
.+.|.+++..++.+.-.+++++.|+|||++.- +...+ . ..-.+.+.+..-++.+..
T Consensus 362 n~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~ 422 (802)
T 2xzl_A 362 NSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAA 422 (802)
T ss_dssp CHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHH
Confidence 45699999999887778999999999994321 11111 1 123355667665555554
No 237
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=50.91 E-value=3.8 Score=40.94 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHhcccccccccccCCccccCc-----cccc-ccCCccccCC--CHHHHHHHHhc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQYNDP-----IKTS-WRAPRCILSL--PDQVHDIIRRN 151 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-----~~~~-~~~~~~i~~~--~~~~~~~~~~~ 151 (367)
++|.+++.+. +..+++.|..|||||..+- +... -.+|..|..+ ++.-+..++..
T Consensus 5 ~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~R 66 (673)
T 1uaa_A 5 PGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 (673)
T ss_dssp HHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHH
Confidence 3488888763 6789999999999993221 1111 1234455444 66666666554
No 238
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=50.79 E-value=5.8 Score=40.05 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=26.2
Q ss_pred cccChHHHhHHHHHHHHHHhHhcccccccccccCCcc--ccCccc
Q psy7790 86 KKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ--YNDPIK 128 (367)
Q Consensus 86 ~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT--~~~p~~ 128 (367)
.+-.|-+. |.-..-.+.+|+ ++...||+||| +++|+.
T Consensus 72 lg~r~~dv----Qligg~~L~~G~--iaEM~TGEGKTLva~lp~~ 110 (822)
T 3jux_A 72 LGMRPFDV----QVMGGIALHEGK--VAEMKTGEGKTLAATMPIY 110 (822)
T ss_dssp TSCCCCHH----HHHHHHHHHTTC--EEECCTTSCHHHHTHHHHH
T ss_pred hCCCCcHH----HHHHHHHHhCCC--hhhccCCCCccHHHHHHHH
Confidence 34666666 555555566777 89999999999 666654
No 239
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=50.51 E-value=36 Score=27.50 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 331 (367)
|..+++.|...|...|+.+. +|.+++..+-...++.|....
T Consensus 67 t~~D~~~L~~~F~~LgF~V~-v~~dlt~~em~~~l~~~s~~d 107 (173)
T 2ql9_A 67 TDKDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKASEED 107 (173)
T ss_dssp HHHHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHhh
Confidence 45789999999999999874 455889999999999997653
No 240
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=50.40 E-value=1.2e+02 Score=25.88 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=59.2
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeecc-------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc----
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEK-------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK---- 329 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s-------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~---- 329 (367)
++..+...-.....+.|...+.+-|.|+.. .....-+.+.|+..|+.+..+++..+...-...++.+..
T Consensus 110 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (295)
T 3hcw_A 110 HIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKD 189 (295)
T ss_dssp EEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred EEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhccc
Confidence 344455544555566666666665555521 234455566678889988888888887766666665543
Q ss_pred -CCCcEEEecc----------cccccCCcCCCCEEEEcC
Q psy7790 330 -GQKDVMVATD----------VASKGLDFEEIKHVINTE 357 (367)
Q Consensus 330 -g~~~vLVaTd----------~~~rGlDi~~v~~VI~yd 357 (367)
.....++|++ +..+|+.+|+==.||=||
T Consensus 190 ~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 228 (295)
T 3hcw_A 190 PNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFN 228 (295)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEEC
T ss_pred CCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 2577777776 223899988433344444
No 241
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=49.26 E-value=33 Score=29.55 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCC--CHHHHHHHHHHHhcCCCcEEEecccccccCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK--DQEERTRSVESFRKGQKDVMVATDVASKGLD 346 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~--~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlD 346 (367)
.+-++|+|.+...+.+....+...|.++.....+- ++.-+.++.+.-+.|..++.+.+-+.. |+|
T Consensus 60 ~pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~-GlD 126 (253)
T 1j5p_A 60 DVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIG-GLD 126 (253)
T ss_dssp TCCEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCC-CHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCccc-chh
Confidence 45699999999988887777778899988887653 677777888888889888877776544 444
No 242
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=48.87 E-value=6.7 Score=40.15 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhHhcccccccccccCCccccCc-ccccc---c-CCccccCCCHHHHHHHHhc
Q psy7790 95 LKEEEKILRSVAETKALMGVAELAKGIQYNDP-IKTSW---R-APRCILSLPDQVHDIIRRN 151 (367)
Q Consensus 95 ~~~Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p-~~~~~---~-~~~~i~~~~~~~~~~~~~~ 151 (367)
.+.|.+++..++.+.-.+++++.|+|||++.- +...+ . ..-.+.+.+..-++.+...
T Consensus 358 n~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~ 419 (800)
T 2wjy_A 358 NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEK 419 (800)
T ss_dssp CHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHH
Confidence 45599999999888778999999999994321 11111 1 1234567777666666554
No 243
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=48.82 E-value=53 Score=28.12 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC---CcEEEecccccccC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ---KDVMVATDVASKGL 345 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~---~~vLVaTd~~~rGl 345 (367)
+..+++.|...|+..|+.|. .+.+++..+-.+++++|.... .+++|+- +++.|.
T Consensus 39 ~~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~-~lsHG~ 95 (250)
T 2j32_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKEDHSKRSSFVCV-LLSHGE 95 (250)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTSCCTTEEEEEEE-EESCEE
T ss_pred CHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHhhccCCCEEEEE-ECCCCC
Confidence 34699999999999999975 567899999999999998653 2344333 345555
No 244
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=48.67 E-value=9.6 Score=30.10 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=29.4
Q ss_pred CCCeEEeeccH---------HHHHHHHHHHHhCCCeEEEEecCC
Q psy7790 281 EPPVLIFAEKK---------QDVDAIHEYLLLKGVEAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~---------~~~~~l~~~L~~~~~~~~~lhg~~ 315 (367)
..++||||.+- ..+..++..|...|+++..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 45799999887 357788899999999999999994
No 245
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=48.19 E-value=1.2e+02 Score=25.88 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|.+.+-++++...+.+..+++.+.|...|.++..+..+++..+ -...++... -|++++||..-
T Consensus 25 ia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 25 YAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 44555566667777777778888999999999999999999986543 334444443 27899999765
No 246
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=48.12 E-value=30 Score=26.10 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=36.0
Q ss_pred eeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHH
Q psy7790 287 FAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESF 327 (367)
Q Consensus 287 F~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 327 (367)
||.+++.|.++..+|..+|+.+..+.=.++...|.+..++.
T Consensus 12 ~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred CccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 45567888999999999999999999889999999888876
No 247
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=47.32 E-value=89 Score=26.36 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=48.3
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHhc--CCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFRK--GQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~~--g~~~vLVaTd 339 (367)
+.+.|...+..+++...+....+.+...+...+..+..+..+++..+. ...++.... |.+++||..-
T Consensus 28 ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 28 IAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp HHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 445555556778888888888899999998888889999999875443 333333322 6899998765
No 248
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=47.18 E-value=57 Score=28.47 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+..+++.|...|+..|+.|. +|.+++..+-.+.++.|..-
T Consensus 67 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 67 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 45689999999999999964 67789999999999999864
No 249
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=47.03 E-value=10 Score=36.28 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecccccccCCcCC
Q psy7790 270 IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEE 349 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rGlDi~~ 349 (367)
+..|..++...+.+++|.|.|...++++.+.|...|+.+...... . .+..| .|.|+..-++.|.-+|+
T Consensus 371 ~~~L~~~~~~~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp THHHHHHHHHCCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCTT--CEEEEESCCCSCEEETT
T ss_pred HHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCCC--cEEEEEcccccCcccCC
Confidence 456666665556789999999999999999999999876544321 1 12334 45566667889999998
Q ss_pred CCEEEE
Q psy7790 350 IKHVIN 355 (367)
Q Consensus 350 v~~VI~ 355 (367)
.++||.
T Consensus 439 ~klaVI 444 (483)
T 3hjh_A 439 RNLALI 444 (483)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 887765
No 250
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=46.41 E-value=1.3e+02 Score=25.68 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=48.8
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEeccc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATDV 340 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd~ 340 (367)
.+.+.|...+..+++...+....+.+...|...+..+..+..+++..+- ...++... -|.+++||..--
T Consensus 39 aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 39 AVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 3455555666778888888888889999998888889999999875442 33333332 278999987653
No 251
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=46.40 E-value=1.4e+02 Score=25.45 Aligned_cols=101 Identities=8% Similarity=-0.013 Sum_probs=59.8
Q ss_pred EEEEechhhHHHHHHHHHhhcCCCeEEeecc-------HHHHHHHHHHHHhCCCeE---EEEecCCCHHHHHHHHHHHhc
Q psy7790 260 EVEYVKQEAKIVYLLECLQKTEPPVLIFAEK-------KQDVDAIHEYLLLKGVEA---VAIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 260 ~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s-------~~~~~~l~~~L~~~~~~~---~~lhg~~~~~~R~~~~~~F~~ 329 (367)
.++.++...-.....+.|...+.+-|.|+.. .....-..+.|...|+.+ ..+.++.+...-...++.+..
T Consensus 104 ~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (294)
T 3qk7_A 104 AWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLA 183 (294)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHc
Confidence 3455565555555666666666654444421 233444556667777653 245677776666666666654
Q ss_pred --CCCcEEEecc----------cccccCCcC-CCCEEEEcCCCC
Q psy7790 330 --GQKDVMVATD----------VASKGLDFE-EIKHVINTEAKI 360 (367)
Q Consensus 330 --g~~~vLVaTd----------~~~rGlDi~-~v~~VI~yd~P~ 360 (367)
.....++|++ +-.+|+.+| +|.+|=.-|.|.
T Consensus 184 ~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~ 227 (294)
T 3qk7_A 184 LEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLPD 227 (294)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSCT
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCccH
Confidence 3567777766 233899998 666665555554
No 252
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=46.32 E-value=46 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=39.5
Q ss_pred CeEEeecc--------------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 283 PVLIFAEK--------------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 283 ~~iVF~~s--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
-+|||+|. ..+++.|...|+..|+.|. .+.+++..+-.+++++|..-
T Consensus 23 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 23 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred EEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 38888774 4789999999999999976 55689999999999999763
No 253
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=46.25 E-value=19 Score=28.18 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCeEEe-e-ccHHH----HHHHHHHHHhCCC---eEEEEecCCC
Q psy7790 270 IVYLLECLQKTEPPVLIF-A-EKKQD----VDAIHEYLLLKGV---EAVAIHGGKD 316 (367)
Q Consensus 270 ~~~l~~~l~~~~~~~iVF-~-~s~~~----~~~l~~~L~~~~~---~~~~lhg~~~ 316 (367)
+..+...+...+.++||| | .+-.. +..+...|...|+ ++..+.||+.
T Consensus 56 ~~~l~~~l~~~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 56 YEKLAKTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHhcccCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 444555554444455555 9 34322 2345577877786 7888999964
No 254
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=45.92 E-value=14 Score=32.10 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+-..+...+..|...|+ ++..|.||+.
T Consensus 230 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 230 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 45799999998889999999999999 5999999986
No 255
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=45.42 E-value=12 Score=32.53 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHh-hcCCCeEEeeccHHH-HHHHHHHHHhCCC-eEEEEecCC
Q psy7790 267 EAKIVYLLECLQ-KTEPPVLIFAEKKQD-VDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 267 ~~k~~~l~~~l~-~~~~~~iVF~~s~~~-~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
...+...+..+. ....++||||.+-.. +..++..|+..|+ ++..|.||+
T Consensus 71 ~~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 71 PETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 344444444432 234569999988665 8888999999999 688888874
No 256
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=44.14 E-value=18 Score=31.20 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=34.0
Q ss_pred hHHHHHHHHH-hhcCCCeEEeeccHH-HHHHHHHHHHhCCC-eEEEEecCC
Q psy7790 268 AKIVYLLECL-QKTEPPVLIFAEKKQ-DVDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 268 ~k~~~l~~~l-~~~~~~~iVF~~s~~-~~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
..+...+..+ .....+++|||.+-. .+.+++..|+..|+ ++..+.||+
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 3444444443 223456899998765 78888999999999 588888884
No 257
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=43.11 E-value=98 Score=26.82 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCC---CcEEEecccccccCCcC
Q psy7790 291 KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ---KDVMVATDVASKGLDFE 348 (367)
Q Consensus 291 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~---~~vLVaTd~~~rGlDi~ 348 (367)
..+++.|...|+..|+.|. +|.+++..+-.+++++|..-. .+++|+- +++.|....
T Consensus 45 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~h~~~D~~vv~-ilSHG~~~~ 103 (277)
T 1nw9_B 45 NIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLELARQDHGALDCCVVV-ILSHGCQAS 103 (277)
T ss_dssp HHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHHSCCTTCSEEEEE-EEEEEECCC
T ss_pred HHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHHhhcccCCeEEEE-EeCCCCccc
Confidence 3699999999999999875 567899999999999997643 3444442 345676643
No 258
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=42.99 E-value=68 Score=23.19 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=33.8
Q ss_pred CCCeEEeec------cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHH
Q psy7790 281 EPPVLIFAE------KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVES 326 (367)
Q Consensus 281 ~~~~iVF~~------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~ 326 (367)
..+++||.. .+-.|..+...|...|+....+.=..+...+....+.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 457999987 4899999999999999887776544455555544443
No 259
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.85 E-value=53 Score=22.94 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcEEEeccc
Q psy7790 268 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDVMVATDV 340 (367)
Q Consensus 268 ~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vLVaTd~ 340 (367)
.....+...|...+..+ +.+.+...+. ..+....+.+..+.-.++...-...++.++.. ...|++.|+.
T Consensus 12 ~~~~~l~~~l~~~g~~v-~~~~~~~~~~---~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKV-IWLVDGSTAL---DQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHHHHTTCEE-EEESCHHHHH---HHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHHHHhCCcEE-EEecCHHHHH---HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 34455556666554444 4455544443 33334456677776655443444555555542 3556665543
No 260
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=42.57 E-value=1.6e+02 Score=25.00 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=62.4
Q ss_pred EEEEechhhHHHHHHHHHhhcCCCeEEeec------cHHHHHHHHHHHHhCCCe--EEEEecCCCHHHHHHHHHHHhc--
Q psy7790 260 EVEYVKQEAKIVYLLECLQKTEPPVLIFAE------KKQDVDAIHEYLLLKGVE--AVAIHGGKDQEERTRSVESFRK-- 329 (367)
Q Consensus 260 ~~~~~~~~~k~~~l~~~l~~~~~~~iVF~~------s~~~~~~l~~~L~~~~~~--~~~lhg~~~~~~R~~~~~~F~~-- 329 (367)
.++.++...-.....+.|...+.+-|.|+. +.....-..+.|...|+. ...+.+..+...-...++.+..
T Consensus 104 ~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (289)
T 3k9c_A 104 GAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMP 183 (289)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSS
T ss_pred CEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCC
Confidence 345556555555566666666666555553 234455566677777765 5567788887777777777755
Q ss_pred CCCcEEEecc----------cccccCCcC-CCCEEEEcCCC
Q psy7790 330 GQKDVMVATD----------VASKGLDFE-EIKHVINTEAK 359 (367)
Q Consensus 330 g~~~vLVaTd----------~~~rGlDi~-~v~~VI~yd~P 359 (367)
.+...++|++ +..+|+.+| +|..|=.-|.|
T Consensus 184 ~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~ 224 (289)
T 3k9c_A 184 TPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDSR 224 (289)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEECCHH
Confidence 3567777765 233799998 56555444444
No 261
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=42.33 E-value=1.5e+02 Score=24.88 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=49.6
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+..+..+..+++..+- ...++... -|.+++||..-
T Consensus 26 aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 26 TLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 3455555667778888888888999999998888899999999875543 33333332 27889998764
No 262
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=42.12 E-value=74 Score=23.15 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=33.8
Q ss_pred CCCeEEee------ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHH
Q psy7790 281 EPPVLIFA------EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVE 325 (367)
Q Consensus 281 ~~~~iVF~------~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~ 325 (367)
..+++||. +++-.|..+...|...|+....+.=..+...|....+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 45799998 6788999999999999988777655555555554443
No 263
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=41.89 E-value=21 Score=31.06 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=28.4
Q ss_pred CCCeEEeeccHH-HHHHHHHHHHhCCC-eEEEEecCC
Q psy7790 281 EPPVLIFAEKKQ-DVDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~-~~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
..+++|||.+-. .+..++..|+..|+ ++..+.||+
T Consensus 79 ~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 79 DTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp TCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 456999998866 67888999999998 588888875
No 264
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=41.87 E-value=1.3e+02 Score=25.27 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+.++++..+. ...++... -|.+++||..-
T Consensus 22 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nA 92 (262)
T 1zem_A 22 ATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA 92 (262)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3445555556677777777777788888887777788888888875442 22333221 26788888764
No 265
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=41.87 E-value=13 Score=32.52 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=32.4
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
...++++||.+-..+...+..|...|+ ++..+.||+.
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 346799999999999999999999998 6899999964
No 266
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=41.48 E-value=50 Score=29.44 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=48.5
Q ss_pred CeEEeecc------------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcEEEecccccccCC
Q psy7790 283 PVLIFAEK------------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDVMVATDVASKGLD 346 (367)
Q Consensus 283 ~~iVF~~s------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vLVaTd~~~rGlD 346 (367)
-+|||.|. ..+++.|...|+..|+.| .+|.+++..+-.+++++|..- ..+++|+- +++.|..
T Consensus 63 ~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv~-ilSHG~~ 140 (316)
T 2fp3_A 63 VLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTSSSYVQNTECFVMV-LMTHGNS 140 (316)
T ss_dssp EEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHTSHHHHTCSCEEEE-EESCEEC
T ss_pred EEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHHHhhcCCCCEEEEE-EccCCCc
Confidence 37888765 389999999999999986 567799999999999999652 23333222 2445655
Q ss_pred cCCCCEEE
Q psy7790 347 FEEIKHVI 354 (367)
Q Consensus 347 i~~v~~VI 354 (367)
..+-..|+
T Consensus 141 ~~g~g~i~ 148 (316)
T 2fp3_A 141 VEGKEKVE 148 (316)
T ss_dssp CTTCCEEE
T ss_pred cCCCCEEE
Confidence 44433443
No 267
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=41.41 E-value=7.5 Score=38.39 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=24.5
Q ss_pred CeEEeeccHHHHHHHHHHHHhCCCeEEEE
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLKGVEAVAI 311 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~l 311 (367)
.+.|.|++...+..+...|...|+++...
T Consensus 349 diaVL~r~~~~~~~l~~~l~~~~Ip~~~~ 377 (647)
T 3lfu_A 349 ECAILYRSNAQSRVLEEALLQASMPYRIY 377 (647)
T ss_dssp GEEEEESSGGGHHHHHHHHHHTTCCEEES
T ss_pred CEEEEEeCchhHHHHHHHHHHCCCCEEEe
Confidence 47888888889999999999999887654
No 268
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=40.94 E-value=1.6e+02 Score=24.66 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=57.2
Q ss_pred EEEEechhhHHHHHHHHHhhcCCCeEEee-cc------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--
Q psy7790 260 EVEYVKQEAKIVYLLECLQKTEPPVLIFA-EK------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-- 330 (367)
Q Consensus 260 ~~~~~~~~~k~~~l~~~l~~~~~~~iVF~-~s------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-- 330 (367)
.++..+...-...+.+.|.+.+.+-|.|+ .. .....-+.+.|...|+.+..++++.+...-...++.+...
T Consensus 96 ~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (277)
T 3cs3_A 96 RQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQ 175 (277)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSCC
T ss_pred CEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcCC
Confidence 34445554444455566655555534443 21 2334445566777788766667777776666666666543
Q ss_pred -CCcEEEecc----------cccccCCcCCCCEEEEcC
Q psy7790 331 -QKDVMVATD----------VASKGLDFEEIKHVINTE 357 (367)
Q Consensus 331 -~~~vLVaTd----------~~~rGlDi~~v~~VI~yd 357 (367)
..+.++|++ +-.+|+.+|+==.||=||
T Consensus 176 ~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 213 (277)
T 3cs3_A 176 TEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFD 213 (277)
T ss_dssp CSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSS
T ss_pred CCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeC
Confidence 567787765 234788887533455554
No 269
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=40.92 E-value=30 Score=29.99 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=30.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHH-hCCC-eEEEEecCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLL-LKGV-EAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~-~~~~-~~~~lhg~~ 315 (367)
..+++|||.+-..+...+..|. ..|+ ++..|.||+
T Consensus 233 ~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 233 DKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 3469999999888888999998 8899 689999995
No 270
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=40.54 E-value=95 Score=21.97 Aligned_cols=55 Identities=22% Similarity=0.087 Sum_probs=38.3
Q ss_pred CCeEEee------ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 282 PPVLIFA------EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 282 ~~~iVF~------~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
.+++||+ +++-.|..+...|...++.+..+.=..+...+....+.+....+..|+
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4688887 577889999999998888877776666666565555544333444443
No 271
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=40.39 E-value=1.4e+02 Score=24.95 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=48.4
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHhc--CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFRK--GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~~--g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+-.+..+..+++..+ -...++.+.+ |.+++||..-
T Consensus 21 aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 91 (257)
T 3imf_A 21 GMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNA 91 (257)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555566677888888888888888888777778889999987543 3333443322 7899998764
No 272
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=40.39 E-value=7.3 Score=37.56 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=16.2
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+..|..++.+++||||||
T Consensus 257 v~~g~~i~I~GptGSGKT 274 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKT 274 (511)
T ss_dssp HHTTCCEEEEESTTSSHH
T ss_pred HhCCCEEEEECCCCCCHH
Confidence 457888999999999999
No 273
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=39.93 E-value=1.4e+02 Score=23.87 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=48.6
Q ss_pred HHHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCCCc
Q psy7790 272 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQKD 333 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~ 333 (367)
.|..+|+..+-..||+| .|.-.+...+..+...|+++..+ .++.+++....+++.++...+.
T Consensus 115 ~L~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~Da~~~~~~~~~~~al~~m~~~G~~ 181 (186)
T 3gbc_A 115 PLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASVE 181 (186)
T ss_dssp BHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEhhhcCCCCHHHHHHHHHHHHHcCCE
Confidence 46777777777788887 56667888888888899998876 5678899999999999875443
No 274
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=39.30 E-value=1.8e+02 Score=24.71 Aligned_cols=96 Identities=10% Similarity=-0.024 Sum_probs=56.9
Q ss_pred EEEechhhHHHHHHHHHhhcC--CCeEEeec-------cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHh-c-
Q psy7790 261 VEYVKQEAKIVYLLECLQKTE--PPVLIFAE-------KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFR-K- 329 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~--~~~iVF~~-------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~-~- 329 (367)
++..+...--..+.+.|.+.+ .+-|+|+. +....+-+.+.|...|+.+....+.-....-...++.+. .
T Consensus 107 ~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (297)
T 3rot_A 107 FLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIH 186 (297)
T ss_dssp EEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred EEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhC
Confidence 444455444445555555555 45455542 124555666777888998888877666666666666643 3
Q ss_pred CCCcEEEecc----------cccccCCcCC--CCEEEEcC
Q psy7790 330 GQKDVMVATD----------VASKGLDFEE--IKHVINTE 357 (367)
Q Consensus 330 g~~~vLVaTd----------~~~rGlDi~~--v~~VI~yd 357 (367)
...+.++|++ +..+|+.+|+ |..| =||
T Consensus 187 ~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vi-g~D 225 (297)
T 3rot_A 187 PETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVY-SFD 225 (297)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEE-EEC
T ss_pred CCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEE-EeC
Confidence 3567777765 2337888875 5444 444
No 275
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=39.10 E-value=47 Score=29.45 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 330 (367)
+..+++.|...|+..|+.|. ++-+++..+-.++++.|..-
T Consensus 92 ~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 92 TDKDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp HHHHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 45789999999999999874 55688999988999998764
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=39.01 E-value=14 Score=30.72 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHHhHhcccccccccccCCccccCcccccc
Q psy7790 98 EEKILRSVAETKALMGVAELAKGIQYNDPIKTSW 131 (367)
Q Consensus 98 Q~~~i~~i~~g~d~~~~a~TgsGKT~~~p~~~~~ 131 (367)
+..++..+..|.=+...++.|+|||-.+-+...+
T Consensus 12 ~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 12 QKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5677888888888889999999999433333333
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=38.93 E-value=8.2 Score=35.29 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=16.2
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+..|.-++.+++||+|||
T Consensus 172 i~~G~~i~ivG~sGsGKS 189 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKT 189 (361)
T ss_dssp HHTTCCEEEEESSSSCHH
T ss_pred HhcCCEEEEECCCCCCHH
Confidence 557889999999999999
No 278
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=38.83 E-value=27 Score=31.08 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCCeEEeeccHH-HHHHHHHHHHhCCC-eEEEEecCC
Q psy7790 281 EPPVLIFAEKKQ-DVDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~-~~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
..+++|||.+-. .+.+++..|+..|+ ++..|.||+
T Consensus 111 ~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 111 DDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 456999998766 78889999999998 588898884
No 279
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.79 E-value=93 Score=21.34 Aligned_cols=63 Identities=21% Similarity=0.382 Sum_probs=46.1
Q ss_pred chhhHHHHHHHHHhhcCCCeEEeec--cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHh
Q psy7790 265 KQEAKIVYLLECLQKTEPPVLIFAE--KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFR 328 (367)
Q Consensus 265 ~~~~k~~~l~~~l~~~~~~~iVF~~--s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~ 328 (367)
.....+..+++.+...+.+.+||+| +..++.++.+.-+..|+....+.+. ++++-.+-.+.|.
T Consensus 35 tssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvrefl 99 (112)
T 2lnd_A 35 TSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREFL 99 (112)
T ss_dssp CSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHHH
Confidence 3456677788888888889999997 4678888888888889888888765 4455444445553
No 280
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=38.71 E-value=21 Score=32.78 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.9
Q ss_pred cccccccccccCCcc
Q psy7790 108 TKALMGVAELAKGIQ 122 (367)
Q Consensus 108 g~d~~~~a~TgsGKT 122 (367)
++.++..+++|+|||
T Consensus 148 ~~~vLL~GppGtGKT 162 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKT 162 (389)
T ss_dssp CSEEEEESSTTSCHH
T ss_pred CceEEEECCCCCCHH
Confidence 578999999999999
No 281
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=38.52 E-value=1.2e+02 Score=27.79 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred HHHHHhhcC-CCeEEeec--cHH---HHHHHHHHHHhCCCeEEEEec---CCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 273 LLECLQKTE-PPVLIFAE--KKQ---DVDAIHEYLLLKGVEAVAIHG---GKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~-~~~iVF~~--s~~---~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
|-+.+...+ .+++|.+. +.. ..+.+...|...|+.+..+.+ .-+.+.-.++.+.++...++++|+--
T Consensus 34 l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 109 (407)
T 1vlj_A 34 IGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVG 109 (407)
T ss_dssp HHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334444444 56777775 233 367888888888888877766 34556677788888888888888653
No 282
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=38.34 E-value=1.1e+02 Score=21.93 Aligned_cols=55 Identities=22% Similarity=0.102 Sum_probs=38.1
Q ss_pred CCCeEEeec------cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEE
Q psy7790 281 EPPVLIFAE------KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVM 335 (367)
Q Consensus 281 ~~~~iVF~~------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 335 (367)
..+++||+. ++-.|..+...|...|+.+..+.=..+...+....+......+.+|
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 346888876 6678999999999999998888777666656555544332334344
No 283
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=38.29 E-value=9.2 Score=41.22 Aligned_cols=25 Identities=12% Similarity=0.168 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHhcccccccccccCCcc
Q psy7790 96 KEEEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 96 ~~Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
++|.++|..- ++++++.|.-|||||
T Consensus 13 ~eQ~~~i~~~--~~~~~v~a~AGSGKT 37 (1232)
T 3u4q_A 13 DDQWNAIVST--GQDILVAAAAGSGKT 37 (1232)
T ss_dssp HHHHHHHHCC--SSCEEEEECTTCCHH
T ss_pred HHHHHHHhCC--CCCEEEEecCCCcHH
Confidence 4488888765 889999999999999
No 284
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=38.11 E-value=1.3e+02 Score=25.77 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=48.8
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|.+.+.++++...+....+.+...+...+..+..+..+++..+ -...++.+. -|.+++||..-
T Consensus 47 aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnA 117 (276)
T 3r1i_A 47 KVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNA 117 (276)
T ss_dssp HHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555566777888888888888888888888888888999986544 334444332 26899998764
No 285
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=37.68 E-value=34 Score=29.52 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHh-hcCCCeEEeeccH-HHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 269 KIVYLLECLQ-KTEPPVLIFAEKK-QDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 269 k~~~l~~~l~-~~~~~~iVF~~s~-~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
.+...+..+. ....+++|||.+- ..+..++..|+..|+ ++..+.||+.
T Consensus 64 ~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 64 QFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp HHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 3444444332 2234689999874 357788889999998 6889999843
No 286
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=37.31 E-value=1.6e+02 Score=24.65 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh---cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR---KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~---~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+-.+..+.++++..+ -...++... .|.+++||..-
T Consensus 20 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 20 GIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA 91 (260)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 344555556667788787777777888877766778888999987544 334455442 58899999775
No 287
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=37.04 E-value=14 Score=29.30 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=13.9
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
++.++..++.|+|||.
T Consensus 43 ~~~~ll~G~~G~GKT~ 58 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTA 58 (195)
T ss_dssp SCEEEEECCTTSCHHH
T ss_pred CCceEEECCCCCCHHH
Confidence 3678999999999994
No 288
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=36.95 E-value=18 Score=30.45 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=31.1
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..++++||.+-..+...+..|...|.++..|.||+.
T Consensus 184 ~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 184 GQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 456999999999999999999999978888999854
No 289
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=36.76 E-value=89 Score=20.50 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=34.0
Q ss_pred CeEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 283 PVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 283 ~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
++++|. +++..|..+...|...|+.+..+.-+.....+....+.+..+.+.+|+
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 455665 456788888888888787776666554444444445555555666654
No 290
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=36.56 E-value=1e+02 Score=22.49 Aligned_cols=76 Identities=11% Similarity=-0.007 Sum_probs=44.0
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc----CCCcEE
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK----GQKDVM 335 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~vL 335 (367)
+..++.+ .-...+...|...+.. +..+.+..++. ..+....+.+..+.-.++...-...++.++. ....|+
T Consensus 10 iLivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~---~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 85 (142)
T 3cg4_A 10 VMIVDDDAHVRIAVKTILSDAGFH-IISADSGGQCI---DLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIV 85 (142)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHH---HHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCeE-EEEeCCHHHHH---HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEE
Confidence 3444443 4455566666665443 44555554443 4455667788888766655445566777765 245677
Q ss_pred Eeccc
Q psy7790 336 VATDV 340 (367)
Q Consensus 336 VaTd~ 340 (367)
+.|+.
T Consensus 86 ~~s~~ 90 (142)
T 3cg4_A 86 MLTAK 90 (142)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 76664
No 291
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=36.42 E-value=36 Score=28.43 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCeEEeeccHH-HHHHHHHHHHhCCCe-EEEEecC
Q psy7790 281 EPPVLIFAEKKQ-DVDAIHEYLLLKGVE-AVAIHGG 314 (367)
Q Consensus 281 ~~~~iVF~~s~~-~~~~l~~~L~~~~~~-~~~lhg~ 314 (367)
..+++|||.+-. .+.+++..|+ .|+. +..+.||
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 467999998876 7888899999 9994 8899998
No 292
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=36.31 E-value=1.9e+02 Score=24.16 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=49.4
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHhc-CCCcEEEeccc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFRK-GQKDVMVATDV 340 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~~-g~~~vLVaTd~ 340 (367)
.+.+.|...+.++++...+....+.+...+...+..+..+..+++..+- ...++.+.. |.+++||..--
T Consensus 22 aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nAg 92 (252)
T 3h7a_A 22 EIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVG 92 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECCC
Confidence 3455555666778888888888889999998888899999999875443 333333322 78899987653
No 293
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=35.71 E-value=12 Score=37.86 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=25.9
Q ss_pred CeEEeeccHHHHHHHHHHHHhCCCeEEEEec
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHG 313 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg 313 (367)
.+-|.|.+...+..+...|...|+++....|
T Consensus 353 diAIL~R~~~~~~~le~~L~~~gIPy~~~g~ 383 (724)
T 1pjr_A 353 DFAVLYRTNAQSRVMEEMLLKANIPYQIVGG 383 (724)
T ss_dssp GEEEEESSGGGHHHHHHHHHHTTCCEEEETS
T ss_pred heeeeeecchhHHHHHHHHHHcCCCEEEeCC
Confidence 3788889999999999999999998876543
No 294
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=35.71 E-value=1.9e+02 Score=23.96 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=49.2
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHhc--CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFRK--GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~~--g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+..+++..+ -...++.+.+ |.+++||..-
T Consensus 24 ~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 24 AYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 455556666777888888888999999999888888999999987543 3333333322 6888888765
No 295
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=35.58 E-value=2.1e+02 Score=24.44 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=48.3
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 43 aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 113 (283)
T 3v8b_A 43 ATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANA 113 (283)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 345555556677888888888888999988887888999999987543 333333332 27899998765
No 296
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=35.22 E-value=8.6 Score=34.70 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=16.5
Q ss_pred hHhcccccccccccCCccc
Q psy7790 105 VAETKALMGVAELAKGIQY 123 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT~ 123 (367)
+..|..++.++++|+|||-
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4578899999999999993
No 297
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=34.99 E-value=2e+02 Score=24.03 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHhc---CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFRK---GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~~---g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+.++++..+ -...++.... |.+++||..-
T Consensus 24 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~A 95 (260)
T 2ae2_A 24 GIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNA 95 (260)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCCEEEECC
Confidence 344555555667778787777777787888777778888888886543 3333333322 7889998764
No 298
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=34.64 E-value=1.7e+02 Score=23.13 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCC
Q psy7790 273 LLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQ 331 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~ 331 (367)
|..+|...+-..||+| .|.-.+...+..+...|+++..+ .++.+......+++.++..-
T Consensus 111 L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~~~Gy~v~vv~Da~~~~~~~~h~~al~~m~~~g 174 (180)
T 1im5_A 111 LAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRG 174 (180)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCEEEEEEeecCHHHHHHHHHHHHCCCEEEEehhhccCCCHHHHHHHHHHHHHcC
Confidence 6667777777778876 66778888888888899998877 67888999999999887653
No 299
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=34.58 E-value=22 Score=30.59 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=30.3
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
..+++|||.+-..+...+..|...|+ ++..|.||+
T Consensus 223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 35699999998888899999999999 588899985
No 300
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=34.29 E-value=1.1e+02 Score=21.84 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=41.0
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEe
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVA 337 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVa 337 (367)
+..++.. .-...+...|...+..+. .+.+..++ ...+....+.+..+--.++...-...++.++.. ...|++.
T Consensus 10 ilivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 10 ILIVEDEQVFRSLLDSWFSSLGATTV-LAADGVDA---LELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEE-EESCHHHH---HHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHH---HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4444443 444555666666655444 34444433 344566667788877666666666666666653 4567776
Q ss_pred ccc
Q psy7790 338 TDV 340 (367)
Q Consensus 338 Td~ 340 (367)
|..
T Consensus 86 t~~ 88 (130)
T 3eod_A 86 SAT 88 (130)
T ss_dssp ECC
T ss_pred EcC
Confidence 663
No 301
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=34.17 E-value=1.8e+02 Score=24.76 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCC-CeEEEEecCCCH--HHHHHHHHHHhc--CCCcEEEeccc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG-VEAVAIHGGKDQ--EERTRSVESFRK--GQKDVMVATDV 340 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~~~--~~R~~~~~~F~~--g~~~vLVaTd~ 340 (367)
.+.+.|...+..+++.+.+......+...|...+ -.+..+..+++. .....+.+.+.. |.+++||..--
T Consensus 27 ~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg 100 (311)
T 3o26_A 27 EICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAG 100 (311)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 3445555566778888888888888888887664 467888888875 344445554433 78999998753
No 302
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=34.14 E-value=15 Score=28.98 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=14.0
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
++.++..+++|+|||.
T Consensus 43 ~~~vll~G~~G~GKT~ 58 (187)
T 2p65_A 43 KNNPILLGDPGVGKTA 58 (187)
T ss_dssp SCEEEEESCGGGCHHH
T ss_pred CCceEEECCCCCCHHH
Confidence 5678999999999994
No 303
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=34.12 E-value=1.9e+02 Score=23.67 Aligned_cols=97 Identities=10% Similarity=0.121 Sum_probs=57.1
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeec-c-------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCC
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAE-K-------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~-s-------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 332 (367)
++..+...-...+.+.|...+.+-|.|+. . .....-..+.|...|+.+..++++.+.+.-...++.+.....
T Consensus 94 ~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (255)
T 1byk_A 94 SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPET 173 (255)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEECCCSCHHHHHHHSGGGCCTTC
T ss_pred EEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcceeecCCccchHHHHHHHHhcCCC
Confidence 44455554455556666666655444432 1 234445566777778765556777777666666666665667
Q ss_pred cEEEecc-c---------ccccCCcCCCCEEEEcCCC
Q psy7790 333 DVMVATD-V---------ASKGLDFEEIKHVINTEAK 359 (367)
Q Consensus 333 ~vLVaTd-~---------~~rGlDi~~v~~VI~yd~P 359 (367)
..++|++ . ..+|+ .+|..|=.-|.|
T Consensus 174 ~ai~~~~d~~A~g~~~al~~~g~--~di~vig~d~~~ 208 (255)
T 1byk_A 174 TALLCATDTLALGASKYLQEQRI--DTLQLASVGNTP 208 (255)
T ss_dssp CEEEESSHHHHHHHHHHHHHTTC--CSCEEEEECCCH
T ss_pred CEEEEeChHHHHHHHHHHHHcCC--CcEEEEEeCCch
Confidence 7777765 2 23677 577665554443
No 304
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=33.90 E-value=10 Score=29.67 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=15.7
Q ss_pred hcccccccccccCCcccc
Q psy7790 107 ETKALMGVAELAKGIQYN 124 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT~~ 124 (367)
.|+-+...+++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688899999999999943
No 305
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.70 E-value=1.1e+02 Score=22.30 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=46.5
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc----CCCcEE
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK----GQKDVM 335 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~vL 335 (367)
+..++.+ .....+...|...+.. +..+.+...+ ...+....+.+..+--.|+...-...++.++. ....|+
T Consensus 9 iLivdd~~~~~~~l~~~l~~~g~~-v~~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 84 (140)
T 3grc_A 9 ILICEDDPDIARLLNLMLEKGGFD-SDMVHSAAQA---LEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIV 84 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCE-EEEECSHHHH---HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCe-EEEECCHHHH---HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 4455544 3445555666665544 4455554443 34456667888888777766666777777776 356788
Q ss_pred Eeccc
Q psy7790 336 VATDV 340 (367)
Q Consensus 336 VaTd~ 340 (367)
+.|+.
T Consensus 85 ~~s~~ 89 (140)
T 3grc_A 85 VVSAN 89 (140)
T ss_dssp EECTT
T ss_pred EEecC
Confidence 87763
No 306
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=33.45 E-value=56 Score=28.07 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=29.7
Q ss_pred CCCeEEeeccHHHHHHHHHHHHh-CCC-eEEEEecCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLL-KGV-EAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~-~~~-~~~~lhg~~ 315 (367)
..++++||.+-..+...+..|.. .|+ ++..|.||+
T Consensus 226 ~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 226 SKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 45799999998888888899985 898 488999984
No 307
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=33.41 E-value=14 Score=28.04 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=27.7
Q ss_pred CCCeEEeeccHHH---------HHHHHHHHHhCCCeEEEEecCC
Q psy7790 281 EPPVLIFAEKKQD---------VDAIHEYLLLKGVEAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s~~~---------~~~l~~~L~~~~~~~~~lhg~~ 315 (367)
..+++|||.+-.. +..++..|...|+++..+.||+
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 3579999987654 3567788888999999999985
No 308
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=33.25 E-value=1.1e+02 Score=23.27 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=37.6
Q ss_pred CCeEEeec------cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEE
Q psy7790 282 PPVLIFAE------KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVM 335 (367)
Q Consensus 282 ~~~iVF~~------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 335 (367)
.+++||+. ++-.|..+...|...|+.+..+.=..+...|....+......+.+|
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V 94 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL 94 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence 46888876 6889999999999999988777766666655555444322334344
No 309
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.16 E-value=1.1e+02 Score=22.95 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=43.3
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcEE
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDVM 335 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vL 335 (367)
+..++.. .-...+...|...+..+ ..+.+...+ ...+....+.+..+--.|+...-...++.++.. .+.|+
T Consensus 10 ILivdd~~~~~~~l~~~L~~~g~~v-~~~~~~~~a---l~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii 85 (154)
T 3gt7_A 10 ILIVEDSPTQAEHLKHILEETGYQT-EHVRNGREA---VRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVI 85 (154)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEE-EEESSHHHH---HHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEE-EEeCCHHHH---HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEE
Confidence 4445544 34455556666555444 344444433 344556677788887666655566677777653 45677
Q ss_pred Eecc
Q psy7790 336 VATD 339 (367)
Q Consensus 336 VaTd 339 (367)
+.|.
T Consensus 86 ~~s~ 89 (154)
T 3gt7_A 86 LLTI 89 (154)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7665
No 310
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=33.12 E-value=2e+02 Score=23.61 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=49.3
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+..+..+..+++..+ -...++.+. .|.+++||..-
T Consensus 20 ~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~A 90 (247)
T 3lyl_A 20 EVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNA 90 (247)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555566777888888888889999999888888999999986443 344444443 36788888765
No 311
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=33.12 E-value=2.2e+02 Score=23.86 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEeccc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATDV 340 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd~ 340 (367)
.+.+.|...+.++++...+....+.+...+...+..+..+..+++..+ -...++.+. .|.+++||..-.
T Consensus 44 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 44 AIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 345555556667888888888888999999888888999999986544 333333332 278899987653
No 312
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=33.06 E-value=2.1e+02 Score=24.28 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=48.6
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+..+..+..+++..+ -...++.+. -|.+++||..-
T Consensus 41 aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA 111 (271)
T 4ibo_A 41 AMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNA 111 (271)
T ss_dssp HHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence 355555566677888888888888888889888888889999987544 333344332 36789998765
No 313
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=33.04 E-value=19 Score=29.19 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=13.7
Q ss_pred ccccccccccCCccc
Q psy7790 109 KALMGVAELAKGIQY 123 (367)
Q Consensus 109 ~d~~~~a~TgsGKT~ 123 (367)
+.++..+++|+|||.
T Consensus 55 ~~~~l~G~~GtGKT~ 69 (202)
T 2w58_A 55 KGLYLHGSFGVGKTY 69 (202)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 789999999999994
No 314
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=32.90 E-value=1.8e+02 Score=24.62 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...|...+..+..+.++++..+. ..+++... -|.+++||..-
T Consensus 37 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~A 107 (277)
T 2rhc_B 37 EIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNA 107 (277)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3445555556677777777777777778887777778888888865432 33333322 26789988764
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=31.96 E-value=9.1 Score=33.23 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=15.6
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+..|.-++.++++|||||
T Consensus 22 i~~g~~v~i~Gp~GsGKS 39 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKS 39 (261)
T ss_dssp GCSSEEEEEECSTTCSHH
T ss_pred hCCCCEEEEECCCCccHH
Confidence 456777889999999999
No 316
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=31.84 E-value=18 Score=36.81 Aligned_cols=30 Identities=10% Similarity=-0.074 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhH----hcccccccccccCCccc
Q psy7790 94 QLKEEEKILRSVA----ETKALMGVAELAKGIQY 123 (367)
Q Consensus 94 ~~~~Q~~~i~~i~----~g~d~~~~a~TgsGKT~ 123 (367)
+.+.|.+++..++ .|+..+.+.++|.|||+
T Consensus 237 Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~ 270 (800)
T 3mwy_W 237 LRDFQLTGINWMAFLWSKGDNGILADEMGLGKTV 270 (800)
T ss_dssp CCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTH
T ss_pred cCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHH
Confidence 4456888887655 88999999999999993
No 317
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.78 E-value=22 Score=30.96 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=13.9
Q ss_pred cccccccccccCCcc
Q psy7790 108 TKALMGVAELAKGIQ 122 (367)
Q Consensus 108 g~d~~~~a~TgsGKT 122 (367)
++.++..+|.|+|||
T Consensus 54 ~~~vll~Gp~GtGKT 68 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKT 68 (297)
T ss_dssp CSEEEEESSSSSCHH
T ss_pred CCeEEEECcCCCCHH
Confidence 578999999999999
No 318
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=31.57 E-value=1.1e+02 Score=22.39 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=44.2
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEe
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVA 337 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVa 337 (367)
+..++.+ .-...+...|...+..+. .+.+...+ ...+....+.+..+.- ++...-...++.++.. ...|++.
T Consensus 7 iLivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a---~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~l 81 (142)
T 2qxy_A 7 VMVVDESRITFLAVKNALEKDGFNVI-WAKNEQEA---FTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp EEEECSCHHHHHHHHHHHGGGTCEEE-EESSHHHH---HHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHH---HHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEE
Confidence 3444443 444556666666554444 55554443 3445556778888887 7766666667666642 4677777
Q ss_pred ccc
Q psy7790 338 TDV 340 (367)
Q Consensus 338 Td~ 340 (367)
|+.
T Consensus 82 s~~ 84 (142)
T 2qxy_A 82 SAY 84 (142)
T ss_dssp ESC
T ss_pred ECC
Confidence 653
No 319
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=31.56 E-value=2.3e+02 Score=23.96 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCC---eEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGV---EAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+.++++...+....+.+...+...+. .+..+.++++..+. ..+++... -|.+++||..-
T Consensus 22 ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA 94 (280)
T 1xkq_A 22 TAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNA 94 (280)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4455555566788888877777888787776665 78888899875442 23333322 26889998765
No 320
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=31.52 E-value=2.2e+02 Score=23.97 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=45.6
Q ss_pred HHHHHHhhcCCCeEE-eeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLI-FAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iV-F~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++ ..++....+.+...+...+..+..+..+++..+. ...++... -|.+++||..-
T Consensus 33 aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 104 (270)
T 3is3_A 33 AVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNS 104 (270)
T ss_dssp HHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555555666666 4456777888888888888889999999875443 33333332 26899998764
No 321
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=31.52 E-value=99 Score=22.08 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=44.4
Q ss_pred EEEechhh-HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc----CCCcEE
Q psy7790 261 VEYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK----GQKDVM 335 (367)
Q Consensus 261 ~~~~~~~~-k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~vL 335 (367)
+..++.+. -...+...|...+.. +..+.+..++ ...+....+.+..+--.|+...-...++.++. ....|+
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a---~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (127)
T 3i42_A 6 ALIVEDYQAAAETFKELLEMLGFQ-ADYVMSGTDA---LHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFV 81 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTEE-EEEESSHHHH---HHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCC-EEEECCHHHH---HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEE
Confidence 44455443 445556666665543 4445444433 34455667788888766665556667777765 346677
Q ss_pred Eecccc
Q psy7790 336 VATDVA 341 (367)
Q Consensus 336 VaTd~~ 341 (367)
+.|...
T Consensus 82 ~~s~~~ 87 (127)
T 3i42_A 82 AVSGFA 87 (127)
T ss_dssp EEECC-
T ss_pred EEECCc
Confidence 777643
No 322
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=31.48 E-value=19 Score=31.67 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=15.1
Q ss_pred HhcccccccccccCCccc
Q psy7790 106 AETKALMGVAELAKGIQY 123 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT~ 123 (367)
..++.++..+|.|+|||.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~ 64 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTL 64 (301)
T ss_dssp CCCSEEEEECSSSSSHHH
T ss_pred CCCceEEEECCCCcCHHH
Confidence 346779999999999993
No 323
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=31.16 E-value=1.2e+02 Score=27.90 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=40.5
Q ss_pred hhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-ccc----ccCCcCCCCE
Q psy7790 278 QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-VAS----KGLDFEEIKH 352 (367)
Q Consensus 278 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-~~~----rGlDi~~v~~ 352 (367)
...+.+++|.+||+.-+.+++..|. |+.+..++|++.. .......+.+.|. .+. ....+.++.+
T Consensus 28 ~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~ 96 (431)
T 2v6i_A 28 VKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS---------ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNL 96 (431)
T ss_dssp HHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC------------------CCCSEEEEEHHHHHHHHHHTCCCCCCSE
T ss_pred HhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc---------cCCCCceEEEEchHHHHHHHhcCccccCCCE
Confidence 3556789999999999999999886 6777766665432 1122222333332 111 2344778888
Q ss_pred EEEcCC
Q psy7790 353 VINTEA 358 (367)
Q Consensus 353 VI~yd~ 358 (367)
||..+.
T Consensus 97 vViDEa 102 (431)
T 2v6i_A 97 YIMDEA 102 (431)
T ss_dssp EEEEST
T ss_pred EEEeCC
Confidence 887554
No 324
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=30.90 E-value=2.6e+02 Score=24.22 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=59.8
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeecc-------HHHHHHHHHHHHhCCCeEEEEe-cCCCHHHHHHHHHHHhc-CC
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEK-------KQDVDAIHEYLLLKGVEAVAIH-GGKDQEERTRSVESFRK-GQ 331 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s-------~~~~~~l~~~L~~~~~~~~~lh-g~~~~~~R~~~~~~F~~-g~ 331 (367)
++.++...-.....+.|...+.+-|.|+.. .....-+.+.|...|+. ..+. +..+.+.-...++.+.. +.
T Consensus 153 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~ll~~~~ 231 (333)
T 3jvd_A 153 RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE-VTFHFGHYSVESGEEMAQVVFNNGL 231 (333)
T ss_dssp EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC-EEEecCCCCHHHHHHHHHHHhcCCC
Confidence 344555555566677777777765655532 23444555667788888 5555 77777766666666544 33
Q ss_pred CcEEEecc----------cccccCCcC-CCCEEEEcCCC
Q psy7790 332 KDVMVATD----------VASKGLDFE-EIKHVINTEAK 359 (367)
Q Consensus 332 ~~vLVaTd----------~~~rGlDi~-~v~~VI~yd~P 359 (367)
...++|++ +-.+|+.+| +|..|=.-|.|
T Consensus 232 ~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D~~~ 270 (333)
T 3jvd_A 232 PDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYDDPE 270 (333)
T ss_dssp CSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEESCCG
T ss_pred CcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEECChH
Confidence 67777665 233899987 55444444444
No 325
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=30.84 E-value=2.6e+02 Score=24.07 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=49.3
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEeccc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATDV 340 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd~ 340 (367)
.+.+.|...+..+++...+....+.+...|...+..+..+..+++..+ -...++... .|.+++||..--
T Consensus 46 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 46 ATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 455555566677888888888888999999888888999999987544 233333332 268999987753
No 326
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=30.80 E-value=1.5e+02 Score=24.85 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=49.3
Q ss_pred HHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
|..+|...+-..||+| .|.-++...+..+...|+++..+ .++.+......+++.++.....| ++|+
T Consensus 148 L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~as~~~~~h~~aL~~m~~~g~~v-~~s~ 218 (227)
T 3r2j_A 148 LAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLEDLTAAVDDAAWSARTAELKDAGVVL-LKSS 218 (227)
T ss_dssp HHHHHHHHTCCEEEEEESCTTTHHHHHHHHHHHTTCEEEEEEEEECCSCGGGHHHHHHHHHTTTCEE-ECGG
T ss_pred HHHHHHHcCCCEEEEEEeccchHHHHHHHHHHHCCCEEEEEhHhhCCCCHHHHHHHHHHHHHcCCEE-EEHH
Confidence 5666666677788887 55667888888888899998876 67788888888999998754443 4443
No 327
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=30.78 E-value=2.7e+02 Score=24.20 Aligned_cols=100 Identities=6% Similarity=0.006 Sum_probs=55.1
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeecc-------HHHHHHHHHHHHhCCCeEE---EEecCCCHHHHHHHHHHHhc-
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEK-------KQDVDAIHEYLLLKGVEAV---AIHGGKDQEERTRSVESFRK- 329 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s-------~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~~- 329 (367)
++..+...-.....+.|...+.+-|.|+.. .....-+.+.|...|+.+. .++++.+...-...++.+..
T Consensus 156 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (340)
T 1qpz_A 156 AVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQ 235 (340)
T ss_dssp EEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTS
T ss_pred EEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcC
Confidence 344454443444555555556554555421 2233445556677776542 34566666665566666654
Q ss_pred -CCCcEEEecc-c---------ccccCCcC-CCCEEEEcCCCC
Q psy7790 330 -GQKDVMVATD-V---------ASKGLDFE-EIKHVINTEAKI 360 (367)
Q Consensus 330 -g~~~vLVaTd-~---------~~rGlDi~-~v~~VI~yd~P~ 360 (367)
.....++|.+ . -.+|+.+| +|..|=.-|.|.
T Consensus 236 ~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D~~~~ 278 (340)
T 1qpz_A 236 PHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRN 278 (340)
T ss_dssp SSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred CCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEeECCchH
Confidence 3567777765 2 23899987 565555555554
No 328
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=30.77 E-value=15 Score=31.39 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.6
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
...+..++..+++|+|||
T Consensus 26 ~~~~~~vll~G~~GtGKt 43 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKE 43 (265)
T ss_dssp TTSCSCEEEECCTTSCHH
T ss_pred hCCCCCEEEECCCCCcHH
Confidence 345688999999999999
No 329
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=30.62 E-value=1.3e+02 Score=24.56 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=50.5
Q ss_pred HHHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
.|..+|...+-..||+| .|.-++...+..+...|+.+..+ .++.++.....+++.++..... +++|+
T Consensus 116 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~as~~~~~h~~al~~m~~~g~~-v~tt~ 187 (204)
T 3hu5_A 116 ECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSARTPGVAESNINDMRAMGIT-CVPLT 187 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHHHHTCE-EECGG
T ss_pred CHHHHHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCEEEEehhhhCCCCHHHHHHHHHHHHHhCCE-EEEHH
Confidence 36667777777788887 66677888888888899998876 6678899999999988764333 44444
No 330
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=30.50 E-value=21 Score=30.32 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.5
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
.+.++..+++|+|||.
T Consensus 45 ~~~vll~G~~GtGKT~ 60 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTL 60 (257)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CCeEEEECcCCCCHHH
Confidence 3568999999999993
No 331
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=30.45 E-value=19 Score=31.17 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=14.9
Q ss_pred HhcccccccccccCCcc
Q psy7790 106 AETKALMGVAELAKGIQ 122 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT 122 (367)
..++.++..++.|+|||
T Consensus 49 ~~~~~~ll~G~~GtGKT 65 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKT 65 (285)
T ss_dssp CCCSEEEEESSSSSSHH
T ss_pred CCCCeEEEECCCCCcHH
Confidence 35678999999999999
No 332
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=30.39 E-value=14 Score=32.89 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=18.9
Q ss_pred HHHHHhHhcccccccccccCCcc
Q psy7790 100 KILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 100 ~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
.++..+..|+.++..++.|+|||
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT 60 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKT 60 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHH
Confidence 34445567899999999999999
No 333
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=30.37 E-value=1.3e+02 Score=22.43 Aligned_cols=76 Identities=17% Similarity=0.045 Sum_probs=41.9
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc--CCCcEEEe
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK--GQKDVMVA 337 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLVa 337 (367)
+..++.. .-...+...|...+. .++.+.+..++. ..+....+.+..+--.++...-...++.++. ....|++.
T Consensus 10 iLivdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~a~---~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 10 VMLVDDEQPILNSLKRLIKRLGC-NIITFTSPLDAL---EALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTC-EEEEESCHHHHH---HHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcCC-eEEEeCCHHHHH---HHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 3444444 444555666665444 344566554443 4455566778887766554334445555543 35677777
Q ss_pred ccc
Q psy7790 338 TDV 340 (367)
Q Consensus 338 Td~ 340 (367)
|..
T Consensus 86 s~~ 88 (154)
T 2rjn_A 86 SGY 88 (154)
T ss_dssp ECG
T ss_pred ecC
Confidence 664
No 334
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=30.35 E-value=2.4e+02 Score=23.60 Aligned_cols=97 Identities=5% Similarity=-0.055 Sum_probs=53.0
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeec-c------HHHHHHHHHHHHhCCCeEE---EE--ecCC----CHHHHHHHH
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAE-K------KQDVDAIHEYLLLKGVEAV---AI--HGGK----DQEERTRSV 324 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~-s------~~~~~~l~~~L~~~~~~~~---~l--hg~~----~~~~R~~~~ 324 (367)
++..+...-...+.+.|...+.+-|.|+. . .....-+.+.|+..|+.+. .+ .+.. +...-...+
T Consensus 101 ~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 180 (288)
T 2qu7_A 101 SITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEAT 180 (288)
T ss_dssp EEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHH
Confidence 34445544455556666665655444432 1 2334445566677776542 34 5666 445444555
Q ss_pred HHHhcCCCcEEEecc-c---------ccccCCcCCCCEEEEcC
Q psy7790 325 ESFRKGQKDVMVATD-V---------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 325 ~~F~~g~~~vLVaTd-~---------~~rGlDi~~v~~VI~yd 357 (367)
+.+.....+.++|++ . ..+|+.+|+==.||=||
T Consensus 181 ~~~l~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 223 (288)
T 2qu7_A 181 KTLLSKGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFD 223 (288)
T ss_dssp HHHHHTTCCEEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEES
T ss_pred HHHHhcCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEEeC
Confidence 555444677777765 2 23799887433445554
No 335
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=30.14 E-value=2.5e+02 Score=23.78 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=57.6
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeecc-------HHHHHHHHHHHHhCCCeEE---EEecCCCHHHHHHHHHHH---
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEK-------KQDVDAIHEYLLLKGVEAV---AIHGGKDQEERTRSVESF--- 327 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s-------~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F--- 327 (367)
++..+...-.....+.|...+.+-|.|+.. .....-..+.|...|+.+. .+.+..+...-...++.+
T Consensus 110 ~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (303)
T 3kke_A 110 SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRG 189 (303)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcch
Confidence 455555555555666666666654555421 2344455566777777543 566777777766777777
Q ss_pred --hc--CCCcEEEecc----------cccccCCcCCCCEEEEcC
Q psy7790 328 --RK--GQKDVMVATD----------VASKGLDFEEIKHVINTE 357 (367)
Q Consensus 328 --~~--g~~~vLVaTd----------~~~rGlDi~~v~~VI~yd 357 (367)
.. .....++|++ +-.+|+.+|+==.||=||
T Consensus 190 ~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D 233 (303)
T 3kke_A 190 ANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGIN 233 (303)
T ss_dssp HCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred hhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEc
Confidence 44 3567777765 224899998433444444
No 336
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=30.12 E-value=2.4e+02 Score=23.47 Aligned_cols=97 Identities=9% Similarity=0.052 Sum_probs=55.1
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeecc-----HHHHHHHHHHHHhCCCeEE--EEecCCCHHHHHHHHHHHhc--CC
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEK-----KQDVDAIHEYLLLKGVEAV--AIHGGKDQEERTRSVESFRK--GQ 331 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s-----~~~~~~l~~~L~~~~~~~~--~lhg~~~~~~R~~~~~~F~~--g~ 331 (367)
++..+...-...+.+.|...+.+-|.|+.. .....-+.+.|...|+.+. .+.+..+...-...++.+.. ..
T Consensus 97 ~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (280)
T 3gyb_A 97 SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPE 176 (280)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTT
T ss_pred EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCC
Confidence 344555555555666666666554444432 2334445556677776543 35667777666666666543 35
Q ss_pred CcEEEecc----------cccccCCcCCCCEEEEcC
Q psy7790 332 KDVMVATD----------VASKGLDFEEIKHVINTE 357 (367)
Q Consensus 332 ~~vLVaTd----------~~~rGlDi~~v~~VI~yd 357 (367)
...++|++ +..+|+.+|+==.||=||
T Consensus 177 ~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 177 VTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 77777765 233799987433444444
No 337
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=30.12 E-value=2.1e+02 Score=23.85 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...|... +..+..+.++++..+. ...++... -|.+++||..-
T Consensus 22 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~A 93 (263)
T 3ai3_A 22 AIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNA 93 (263)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 344555555667777777777777777777554 5677888888875442 22333221 26788888764
No 338
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=30.01 E-value=16 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=28.1
Q ss_pred CeEEeeccHHHHHHHHHHHHhC------C-CeEEEEecCCC
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLK------G-VEAVAIHGGKD 316 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~------~-~~~~~lhg~~~ 316 (367)
+++|||.+-..+...+..|... | .++..+.||+.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 6999999988888888888877 3 47888999864
No 339
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=29.97 E-value=1.5e+02 Score=20.98 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=45.0
Q ss_pred EEEechhh-HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEEec
Q psy7790 261 VEYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMVAT 338 (367)
Q Consensus 261 ~~~~~~~~-k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVaT 338 (367)
+..++.+. -...+...|...+..+ +.+.+-.++ ...+....+.+..+--.|+...-...++.++.. ...|++.|
T Consensus 5 ilivdd~~~~~~~l~~~L~~~g~~v-~~~~~~~~a---l~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 5 ILVVDDEKPIADILEFNLRKEGYEV-HCAHDGNEA---VEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEE-EEESSHHHH---HHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHhCCEEE-EEeCCHHHH---HHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 44555443 3444555666554444 445554443 344566678888888788777777777777753 35677666
Q ss_pred c
Q psy7790 339 D 339 (367)
Q Consensus 339 d 339 (367)
.
T Consensus 81 ~ 81 (120)
T 3f6p_A 81 A 81 (120)
T ss_dssp E
T ss_pred C
Confidence 5
No 340
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=29.93 E-value=36 Score=29.81 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=30.4
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 316 (367)
..++++||.+-..+...+..|...|+. +..|.||+.
T Consensus 240 ~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 240 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 457999999988888888899999985 889999854
No 341
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.67 E-value=1.4e+02 Score=21.41 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=43.9
Q ss_pred EEEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcE
Q psy7790 260 EVEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDV 334 (367)
Q Consensus 260 ~~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~v 334 (367)
.+..++.+ .-...+...|...+..+ ..+.+..++ ...+......+..+--.|+...-...++.++.. ...|
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~v-~~~~~~~~a---~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 8 RILVVDDDQAMAAAIERVLKRDHWQV-EIAHNGFDA---GIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE-EEESSHHHH---HHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEE
T ss_pred cEEEEECCHHHHHHHHHHHHHCCcEE-EEeCCHHHH---HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeE
Confidence 34455544 34445555666544434 445544444 334556677888887777665666777777763 3456
Q ss_pred EEecc
Q psy7790 335 MVATD 339 (367)
Q Consensus 335 LVaTd 339 (367)
++.|.
T Consensus 84 i~~~~ 88 (132)
T 3lte_A 84 LVVSG 88 (132)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 66665
No 342
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=29.64 E-value=1.4e+02 Score=26.55 Aligned_cols=90 Identities=7% Similarity=0.077 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc----cc
Q psy7790 267 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV----AS 342 (367)
Q Consensus 267 ~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~----~~ 342 (367)
.+++..+.+.|...+.++ ||+.+..+.+.........+-.+..+.|.++-.+-..++. ..+++|+.|. ++
T Consensus 203 ~~~~~~l~~~l~~~g~~v-vl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~-----~a~~~i~~DsG~~HlA 276 (349)
T 3tov_A 203 AERFAHVADYFGRLGYKT-VFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMN-----RCNLLITNDSGPMHVG 276 (349)
T ss_dssp HHHHHHHHHHHHHHTCEE-EECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHH-----TCSEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeE-EEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHH-----hCCEEEECCCCHHHHH
Confidence 467777888777664444 4455555544444444444445677788888777665553 5789999883 22
Q ss_pred ccCCcCCCCEEEEcCCCCCccccC
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREHG 366 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y~ 366 (367)
-.+ ++..|..|+ |.++..||
T Consensus 277 aa~---g~P~v~lfg-~t~p~~~~ 296 (349)
T 3tov_A 277 ISQ---GVPIVALYG-PSNPFFYG 296 (349)
T ss_dssp HTT---TCCEEEECS-SCCHHHHS
T ss_pred Hhc---CCCEEEEEC-CCCccccC
Confidence 334 455677787 44565554
No 343
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=29.60 E-value=2.2e+02 Score=23.69 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHhhcCCCeEEeeccHHH--HHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQD--VDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~--~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+.++++...+... .+.+...+...+..+..+..+++..+. ...++.+. -|.+++||..-
T Consensus 18 ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA 89 (258)
T 3a28_C 18 ISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNA 89 (258)
T ss_dssp HHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred HHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 444444556666666666555 677777777667778888888875443 33333322 26789988764
No 344
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=29.52 E-value=2.2e+02 Score=24.30 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=47.6
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+.++++..+ -...++... -|.+++||..-
T Consensus 23 aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA 93 (280)
T 3tox_A 23 AAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNA 93 (280)
T ss_dssp HHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555556667888888888888888888877888889999887543 333333332 26889998765
No 345
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=29.47 E-value=2.3e+02 Score=24.00 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 43 aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 113 (270)
T 3ftp_A 43 AIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNA 113 (270)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555566777888888888888888888877778888888886543 233333332 26899998765
No 346
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=29.37 E-value=81 Score=30.48 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=37.2
Q ss_pred CCCeEEeeccHHHHHHHH-HHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccc----------ccCCcCC
Q psy7790 281 EPPVLIFAEKKQDVDAIH-EYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVAS----------KGLDFEE 349 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~-~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~----------rGlDi~~ 349 (367)
.+++||.|+++.-+..+. +.+...+..+..++++. ..+..+|+|+|.-.- +.+....
T Consensus 235 ~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~ 302 (590)
T 3h1t_A 235 KPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDF 302 (590)
T ss_dssp CCCEEEEEC-----------CCTTTCSSEEECCC--------------CCSSCSEEEEEGGGC------CCGGGGSCTTS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC------------CCCCCcEEEEEhhhhccccccccccccCCCCc
Confidence 467999999999999998 78877777777776542 245678999997322 2244556
Q ss_pred CCEEEEcCC
Q psy7790 350 IKHVINTEA 358 (367)
Q Consensus 350 v~~VI~yd~ 358 (367)
+++||.-++
T Consensus 303 ~~lvIiDEa 311 (590)
T 3h1t_A 303 FDLIIIDEC 311 (590)
T ss_dssp CSEEEESCC
T ss_pred cCEEEEECC
Confidence 778876554
No 347
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=29.36 E-value=11 Score=30.39 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.6
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.|+=++.++|+|+|||
T Consensus 4 ~g~~i~i~GpsGsGKS 19 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRR 19 (180)
T ss_dssp CCCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4666788999999999
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=29.33 E-value=46 Score=30.43 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=27.9
Q ss_pred hcccccccccccCCccccCcccccccCCc---------cccCCCHHHHHHHHhccCeEE
Q psy7790 107 ETKALMGVAELAKGIQYNDPIKTSWRAPR---------CILSLPDQVHDIIRRNLRILV 156 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT~~~p~~~~~~~~~---------~i~~~~~~~~~~~~~~~~i~~ 156 (367)
.|.=+..+++.|+|||-..-+...+.+|. .+..+.......+++..+...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~ 111 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIF 111 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEEC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEe
Confidence 45556788999999993333333333221 234455555555665544443
No 349
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=29.31 E-value=18 Score=34.70 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=20.4
Q ss_pred HHHHHHhHhcccccccccccCCcc
Q psy7790 99 EKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 99 ~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
+.++..+..|..++..+++|+|||
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT 55 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKS 55 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHH
Confidence 345566778899999999999999
No 350
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=29.09 E-value=1.3e+02 Score=20.24 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=36.5
Q ss_pred CeEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEE
Q psy7790 283 PVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMV 336 (367)
Q Consensus 283 ~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 336 (367)
++++|. +++..|..+...|...++.+..+.=..+...+....+.+..+.+.+++
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~ 61 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 456665 557888889999988888877776665555555555555555555543
No 351
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=28.96 E-value=1.5e+02 Score=21.13 Aligned_cols=76 Identities=11% Similarity=0.006 Sum_probs=39.3
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhC-CCeEEEEecCCCH-HHHHHHHHHHhc--CCCcEE
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQ-EERTRSVESFRK--GQKDVM 335 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~-~~R~~~~~~F~~--g~~~vL 335 (367)
+..++.. .-...+...|...+..+. .+.+...+. ..+... ...+..+.-.++. ..-...++.++. ....|+
T Consensus 8 ilivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a~---~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 8 ILLADDEAILLLDFESTLTDAGFLVT-AVSSGAKAI---EMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEE-EESSHHHHH---HHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCEEE-EECCHHHHH---HHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3444443 344555666665544444 455544433 445554 5677777655543 333444555543 356777
Q ss_pred Eeccc
Q psy7790 336 VATDV 340 (367)
Q Consensus 336 VaTd~ 340 (367)
+.|..
T Consensus 84 ~~s~~ 88 (132)
T 2rdm_A 84 YISGH 88 (132)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 76653
No 352
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=28.85 E-value=2.5e+02 Score=23.32 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...|...+..+..+.++++..+ -...++... -|.+++||..-
T Consensus 29 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~A 99 (260)
T 2zat_A 29 AIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNA 99 (260)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 344555555667777777777777777778777777888888876443 223333221 26788888754
No 353
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=28.84 E-value=2.6e+02 Score=23.57 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=48.1
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCC---eEEEEecCCCHHH-HHHHHHHHhc--CCCcEEEeccc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGV---EAVAIHGGKDQEE-RTRSVESFRK--GQKDVMVATDV 340 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~-R~~~~~~F~~--g~~~vLVaTd~ 340 (367)
.+.+.|...+.++++...+....+.+...|...+. .+..+.++++..+ -...++.+.. |.+++||..-.
T Consensus 26 aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 100 (281)
T 3svt_A 26 GVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAG 100 (281)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 34555556667788888888888888888887765 7888889987543 3334444322 78999987653
No 354
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=28.54 E-value=61 Score=30.00 Aligned_cols=36 Identities=17% Similarity=0.436 Sum_probs=30.9
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~ 316 (367)
..+++|||.+-..+..++..|...|+ ++..|.|++.
T Consensus 203 ~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 203 DTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 34699999999889999999999998 6889999854
No 355
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=28.49 E-value=1.6e+02 Score=27.47 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=40.6
Q ss_pred hcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc-ccc----ccCCcCCCCEE
Q psy7790 279 KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD-VAS----KGLDFEEIKHV 353 (367)
Q Consensus 279 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd-~~~----rGlDi~~v~~V 353 (367)
..+.++||.++|+..+.++++.|. |+.+....+.+... ......+.++|. .+. ...++.++++|
T Consensus 48 ~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~~~~~~~---------~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~i 116 (459)
T 2z83_A 48 QQRLRTAVLAPTRVVAAEMAEALR--GLPVRYQTSAVQRE---------HQGNEIVDVMCHATLTHRLMSPNRVPNYNLF 116 (459)
T ss_dssp HTTCCEEEEECSHHHHHHHHHHTT--TSCEEECC-----------------CCCSEEEEEHHHHHHHHHSCC-CCCCSEE
T ss_pred hCCCcEEEECchHHHHHHHHHHhc--CceEeEEecccccC---------CCCCcEEEEEchHHHHHHhhccccccCCcEE
Confidence 456789999999999999999986 55555444433211 122333444443 221 23567789999
Q ss_pred EEcCC
Q psy7790 354 INTEA 358 (367)
Q Consensus 354 I~yd~ 358 (367)
|..++
T Consensus 117 ViDEa 121 (459)
T 2z83_A 117 VMDEA 121 (459)
T ss_dssp EESST
T ss_pred EEECC
Confidence 87665
No 356
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=28.48 E-value=31 Score=30.69 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=13.4
Q ss_pred ccccccccccCCccc
Q psy7790 109 KALMGVAELAKGIQY 123 (367)
Q Consensus 109 ~d~~~~a~TgsGKT~ 123 (367)
+.++..+|.|+|||.
T Consensus 46 ~~iLL~GppGtGKT~ 60 (322)
T 1xwi_A 46 RGILLFGPPGTGKSY 60 (322)
T ss_dssp SEEEEESSSSSCHHH
T ss_pred ceEEEECCCCccHHH
Confidence 678999999999993
No 357
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=28.45 E-value=84 Score=21.71 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHH
Q psy7790 290 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESF 327 (367)
Q Consensus 290 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 327 (367)
++++|..+...|...|+....+.=..+...|....+..
T Consensus 17 ~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 17 IKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 34455888899999998887777777776666655544
No 358
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=28.38 E-value=2.7e+02 Score=23.50 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...|...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 19 aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 19 GIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555566777888888888899999999888888999999987443 333333332 27899999765
No 359
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=28.36 E-value=1.8e+02 Score=21.40 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=32.8
Q ss_pred CCeEEeec------cHHHHHHHHHHHHhCCCe-EEEEecCCCHHHHHHHHH
Q psy7790 282 PPVLIFAE------KKQDVDAIHEYLLLKGVE-AVAIHGGKDQEERTRSVE 325 (367)
Q Consensus 282 ~~~iVF~~------s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~ 325 (367)
.+++||.. ++-.|..+.+.|...|++ ...+.=..+.+.|....+
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~ 70 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH
Confidence 46999988 588999999999999985 766665555555554443
No 360
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=28.31 E-value=2.6e+02 Score=23.25 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHhc---CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFRK---GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~~---g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+.++++..+ -..+++.... |.+++||..-
T Consensus 29 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~id~li~~A 100 (266)
T 1xq1_A 29 AIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNL 100 (266)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 345555555666777777777777777777777777888888876543 2333333322 7788888654
No 361
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=28.14 E-value=2.4e+02 Score=23.75 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHH-HhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYL-LLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+ ...+..+..+.++++..+ -..+++... -|.+++||..-
T Consensus 36 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnA 107 (267)
T 1vl8_A 36 GIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA 107 (267)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345555556667788777777777777666 444667888888887543 233333322 26889988754
No 362
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=28.12 E-value=1.7e+02 Score=26.41 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCCeEEeecc--HH---HHHHHHHHHHhCCCeEEEEe---cCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 271 VYLLECLQKTEPPVLIFAEK--KQ---DVDAIHEYLLLKGVEAVAIH---GGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 271 ~~l~~~l~~~~~~~iVF~~s--~~---~~~~l~~~L~~~~~~~~~lh---g~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
..|-+.+...+.+++|.+.. .. ..+.+...|...|+.+..+. +.-+.+.-.++.+.++..+.+++|+--
T Consensus 30 ~~l~~~l~~~g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 30 EKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34444454445566766643 22 36778888877787766654 344666777778888887888887653
No 363
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=28.10 E-value=2e+02 Score=25.90 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 289 EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 289 ~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
++...++++.+.++..+..+..==||=+.-+=-+.+. +..|---|.|-|.
T Consensus 70 ~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~~~~p~i~IPTT 119 (370)
T 1jq5_A 70 ASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DELDAYIVIVPTA 119 (370)
T ss_dssp CBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HHHTCEEEEEESS
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-HhcCCCEEEeccc
Confidence 3556777777777777665544333323333333333 3334334556665
No 364
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.95 E-value=1.3e+02 Score=22.51 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=44.8
Q ss_pred EEEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc--CCCcEEE
Q psy7790 260 EVEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK--GQKDVMV 336 (367)
Q Consensus 260 ~~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLV 336 (367)
.+..++.+ .-...+...|...+. .++.|.+..++. ..+....+.+..+--.|+...-...++.++. ....|++
T Consensus 16 ~ILivdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~a~---~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 91 (153)
T 3hv2_A 16 EILLVDSQEVILQRLQQLLSPLPY-TLHFARDATQAL---QLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRIL 91 (153)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSC-EEEEESSHHHHH---HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred eEEEECCCHHHHHHHHHHhcccCc-EEEEECCHHHHH---HHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEE
Confidence 44555554 445556666666544 444565555544 3445567788887766655445555555554 3567887
Q ss_pred eccc
Q psy7790 337 ATDV 340 (367)
Q Consensus 337 aTd~ 340 (367)
.|..
T Consensus 92 ~s~~ 95 (153)
T 3hv2_A 92 LTGD 95 (153)
T ss_dssp ECCC
T ss_pred EECC
Confidence 7763
No 365
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=27.95 E-value=21 Score=33.29 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=16.7
Q ss_pred HHHHHHhH--hcccccccccccCCcc
Q psy7790 99 EKILRSVA--ETKALMGVAELAKGIQ 122 (367)
Q Consensus 99 ~~~i~~i~--~g~d~~~~a~TgsGKT 122 (367)
..++..++ .|.-++.+++||||||
T Consensus 156 ~~~L~~l~~~~ggii~I~GpnGSGKT 181 (418)
T 1p9r_A 156 HDNFRRLIKRPHGIILVTGPTGSGKS 181 (418)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHH
Confidence 33444433 4556789999999999
No 366
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=27.70 E-value=13 Score=33.41 Aligned_cols=14 Identities=29% Similarity=0.143 Sum_probs=11.6
Q ss_pred ccccccccccCCcc
Q psy7790 109 KALMGVAELAKGIQ 122 (367)
Q Consensus 109 ~d~~~~a~TgsGKT 122 (367)
+=++..+|||+|||
T Consensus 4 ~~i~i~GptgsGKt 17 (322)
T 3exa_A 4 KLVAIVGPTAVGKT 17 (322)
T ss_dssp EEEEEECCTTSCHH
T ss_pred cEEEEECCCcCCHH
Confidence 34577899999999
No 367
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=27.70 E-value=1.4e+02 Score=21.52 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=38.8
Q ss_pred EEEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEEe
Q psy7790 260 EVEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMVA 337 (367)
Q Consensus 260 ~~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVa 337 (367)
.+..++.+ .-...+...|...+.. ++.+.+..++. ..+....+.+.. -.+++--+-.+.++.. . ...|++.
T Consensus 20 ~ilivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al---~~l~~~~~dlvi-~~~~~g~~~~~~l~~~--~~~~~ii~l 92 (137)
T 2pln_A 20 RVLLIEKNSVLGGEIEKGLNVKGFM-ADVTESLEDGE---YLMDIRNYDLVM-VSDKNALSFVSRIKEK--HSSIVVLVS 92 (137)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE-EEEESCHHHHH---HHHHHSCCSEEE-ECSTTHHHHHHHHHHH--STTSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCcE-EEEeCCHHHHH---HHHHcCCCCEEE-EcCccHHHHHHHHHhc--CCCccEEEE
Confidence 34445544 4445556666665443 44566555444 334455566666 4555544433444333 3 6777777
Q ss_pred ccc
Q psy7790 338 TDV 340 (367)
Q Consensus 338 Td~ 340 (367)
|..
T Consensus 93 s~~ 95 (137)
T 2pln_A 93 SDN 95 (137)
T ss_dssp ESS
T ss_pred eCC
Confidence 763
No 368
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=27.64 E-value=13 Score=33.73 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.9
Q ss_pred cccccccccccCCcc
Q psy7790 108 TKALMGVAELAKGIQ 122 (367)
Q Consensus 108 g~d~~~~a~TgsGKT 122 (367)
++-++.++|||+|||
T Consensus 40 ~~lIvI~GPTgsGKT 54 (339)
T 3a8t_A 40 EKLLVLMGATGTGKS 54 (339)
T ss_dssp CEEEEEECSTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 346789999999999
No 369
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=27.63 E-value=2.7e+02 Score=23.37 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHhc---CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFRK---GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~~---g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+..+..+.++++..+ -..+++.... |.+++||..-
T Consensus 36 aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~nA 107 (273)
T 1ae1_A 36 AIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNA 107 (273)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 345555556667777777777777888888777778888888886543 3333333322 7899998765
No 370
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=27.55 E-value=2.9e+02 Score=23.62 Aligned_cols=155 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhh---
Q psy7790 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQK--- 279 (367)
Q Consensus 203 ~~v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~--- 279 (367)
.+...+-..+..+..-+++..+-+......+.......+-+..-.... ....-...++..+...--..+.+.|..
T Consensus 47 ~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~--~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~ 124 (330)
T 3uug_A 47 NQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLI--RNSGDVSYYATFDNFQVGVLQATSITDKLG 124 (330)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCC--CSCTTCCEEEEECHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCC--CCCCceeEEEEeCHHHHHHHHHHHHHHHhc
Q ss_pred ----cCCCeEEeecc-------HHHHHHHHHHHHhC---C-CeEEEEe--------cCCCHHHHHHHHHHHhc-----CC
Q psy7790 280 ----TEPPVLIFAEK-------KQDVDAIHEYLLLK---G-VEAVAIH--------GGKDQEERTRSVESFRK-----GQ 331 (367)
Q Consensus 280 ----~~~~~iVF~~s-------~~~~~~l~~~L~~~---~-~~~~~lh--------g~~~~~~R~~~~~~F~~-----g~ 331 (367)
.+.+-|+|+.. .....-+.+.|... + +.+..-. +..+...-...++.+.. ..
T Consensus 125 ~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (330)
T 3uug_A 125 LKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAK 204 (330)
T ss_dssp GGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSC
T ss_pred ccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCC
Q ss_pred CcEEEecc----------cccccCCcCC--CCEEEEcCCC
Q psy7790 332 KDVMVATD----------VASKGLDFEE--IKHVINTEAK 359 (367)
Q Consensus 332 ~~vLVaTd----------~~~rGlDi~~--v~~VI~yd~P 359 (367)
...++|++ +-.+|+.+|+ +..|+-+|..
T Consensus 205 ~~ai~~~nd~~A~g~~~al~~~g~~vP~d~i~vv~g~D~~ 244 (330)
T 3uug_A 205 VDAVLSPYDGLSIGIISSLKGVGYGTKDQPLPVVSGQDAE 244 (330)
T ss_dssp CCEEECSSHHHHHHHHHHHHHTTCSSSSSCCCEECCSSCC
T ss_pred eEEEEECCCchHHHHHHHHHHcCCCCCCCceEEEEecCCC
No 371
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.25 E-value=1.6e+02 Score=21.34 Aligned_cols=77 Identities=9% Similarity=-0.024 Sum_probs=44.0
Q ss_pred EEEEechhhH-HHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcE
Q psy7790 260 EVEYVKQEAK-IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDV 334 (367)
Q Consensus 260 ~~~~~~~~~k-~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~v 334 (367)
.+..++.+.- ...+...|...+.. ++.+.+-.++- ..+....+.+..+--.|+...-...++.++.. ...|
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al---~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGAGYE-VRRAASGEEAL---QQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHH---HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE-EEEeCCHHHHH---HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 3445554433 44455566655443 44455544443 34555677788887667655566667766652 4667
Q ss_pred EEeccc
Q psy7790 335 MVATDV 340 (367)
Q Consensus 335 LVaTd~ 340 (367)
++.|.-
T Consensus 82 i~~t~~ 87 (136)
T 3t6k_A 82 LMLTAQ 87 (136)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 777753
No 372
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=27.01 E-value=2.8e+02 Score=23.27 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+.++++..+ -..+++.+. -|.+++||..-
T Consensus 46 ~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~li~~A 116 (272)
T 1yb1_A 46 LTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNA 116 (272)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 455555566667888888777778888888777777888888886543 333344332 26788888765
No 373
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=26.98 E-value=1.9e+02 Score=21.26 Aligned_cols=45 Identities=29% Similarity=0.224 Sum_probs=32.6
Q ss_pred CCCeEEeec------cHHHHHHHHHHHHhCCCe---EEEEecCCCHHHHHHHHH
Q psy7790 281 EPPVLIFAE------KKQDVDAIHEYLLLKGVE---AVAIHGGKDQEERTRSVE 325 (367)
Q Consensus 281 ~~~~iVF~~------s~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~~~ 325 (367)
..+++||.. .+-.|..+...|...|+. +..+.=..+...|....+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 457999987 488999999999998987 666655555555554443
No 374
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=26.67 E-value=28 Score=28.56 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=12.1
Q ss_pred cccccccccCCcc
Q psy7790 110 ALMGVAELAKGIQ 122 (367)
Q Consensus 110 d~~~~a~TgsGKT 122 (367)
-++..++.|+|||
T Consensus 47 ~~ll~G~~G~GKT 59 (250)
T 1njg_A 47 AYLFSGTRGVGKT 59 (250)
T ss_dssp EEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999999
No 375
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=26.65 E-value=16 Score=30.41 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=14.1
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.|+-++..++||+|||
T Consensus 33 ~g~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKS 48 (205)
T ss_dssp TTEEEEEECCCTTTTH
T ss_pred CCEEEEEECCCCCCHH
Confidence 4677899999999998
No 376
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=26.62 E-value=1.8e+02 Score=23.66 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=50.1
Q ss_pred HHHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
.|..+|...+...||+| .|.-++...+..+...|+++..+ .++.+......+++.++ . .-.+++|+
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~as~~~~~h~~al~~l~-~-~a~v~tt~ 180 (204)
T 3hb7_A 110 DLDLYLKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLSDGTASKTEEMHEYGLNDLS-I-FTKVMTVD 180 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHH-H-HSEEECHH
T ss_pred cHHHHHHHCCCCEEEEEeecccHHHHHHHHHHHHCCCEEEEechhccCCCHHHHHHHHHHHH-h-CCEEeeHH
Confidence 46667777777778887 66677888888888899998876 67788898999999888 3 34455554
No 377
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=26.40 E-value=2.5e+02 Score=23.90 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCCeEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++.. ++.+..+.+...+...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 44 aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 115 (280)
T 4da9_A 44 GIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA 115 (280)
T ss_dssp HHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34555555566677766 4677788888888887888888888886543 233333322 26888888764
No 378
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=26.06 E-value=28 Score=29.44 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.7
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
.+.++..++.|+|||+
T Consensus 39 ~~~vll~G~~GtGKT~ 54 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTL 54 (262)
T ss_dssp CCEEEEESCTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4668999999999993
No 379
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=26.00 E-value=15 Score=30.54 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=14.9
Q ss_pred hcccccccccccCCccc
Q psy7790 107 ETKALMGVAELAKGIQY 123 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT~ 123 (367)
.++.++..++.|+|||.
T Consensus 51 ~~~~~ll~G~~G~GKT~ 67 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTH 67 (242)
T ss_dssp SCSEEEEECSTTSSHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 46789999999999993
No 380
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=25.97 E-value=15 Score=32.90 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=11.2
Q ss_pred cccccccccCCcc
Q psy7790 110 ALMGVAELAKGIQ 122 (367)
Q Consensus 110 d~~~~a~TgsGKT 122 (367)
=++..+|||+|||
T Consensus 12 ~i~i~GptgsGKt 24 (316)
T 3foz_A 12 AIFLMGPTASGKT 24 (316)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
Confidence 3577899999999
No 381
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=25.92 E-value=1.1e+02 Score=22.18 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=40.8
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC-----HHHHHHHHHHHhc--CCC
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD-----QEERTRSVESFRK--GQK 332 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~-----~~~R~~~~~~F~~--g~~ 332 (367)
+..++.+ .-...+...|...+..+ +.+.+..++ ...+....+.+..+.-.++ ...-...++.++. ...
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~~v-~~~~~~~~a---~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~ 81 (140)
T 2qr3_A 6 IIIVDDNKGVLTAVQLLLKNHFSKV-ITLSSPVSL---STVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDL 81 (140)
T ss_dssp EEEECSCHHHHHHHHHHHTTTSSEE-EEECCHHHH---HHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTC
T ss_pred EEEEeCCHHHHHHHHHHHHhCCcEE-EEeCCHHHH---HHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCC
Confidence 3444443 44455666666654434 455554443 3445556677888776655 3334445555543 356
Q ss_pred cEEEeccc
Q psy7790 333 DVMVATDV 340 (367)
Q Consensus 333 ~vLVaTd~ 340 (367)
.|++.|+.
T Consensus 82 ~ii~ls~~ 89 (140)
T 2qr3_A 82 PVVLFTAY 89 (140)
T ss_dssp CEEEEEEG
T ss_pred CEEEEECC
Confidence 77777753
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=25.76 E-value=13 Score=34.06 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=15.5
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
+..|.-++.+++||||||
T Consensus 133 ~~~g~~i~ivG~~GsGKT 150 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKS 150 (372)
T ss_dssp TSSSEEEEEECSSSSSHH
T ss_pred hcCCCEEEEECCCCCCHH
Confidence 446777899999999999
No 383
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=25.73 E-value=1.9e+02 Score=23.84 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=45.5
Q ss_pred HHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHH--HHHHHHHHHhcCCCcE
Q psy7790 273 LLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQE--ERTRSVESFRKGQKDV 334 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~--~R~~~~~~F~~g~~~v 334 (367)
|..+|+..+-..||+| .|.-++...+..+...|+.+..+ .++.+.. ....+++.++...+.+
T Consensus 145 L~~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~~~~~~al~~m~~~Gv~i 213 (216)
T 3v8e_A 145 MNKYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLLDYTRPISDDPEVINKVKEELKAHNINV 213 (216)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhCCCCEEEEEEeccccHHHHHHHHHHHCCCEEEEeccccCCCCcccHHHHHHHHHHHHcCCEE
Confidence 5566676677778777 56667777888888889988776 4566766 8888899888755443
No 384
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=25.72 E-value=3e+02 Score=23.15 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCCeEEeecc------------HHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHhc--CCCcEEE
Q psy7790 272 YLLECLQKTEPPVLIFAEK------------KQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFRK--GQKDVMV 336 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~~--g~~~vLV 336 (367)
.+.+.|...+..+++...+ ....+.+...+...+..+..+..+++..+- .+.++.+.. |.+++||
T Consensus 25 ~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv 104 (287)
T 3pxx_A 25 SHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVV 104 (287)
T ss_dssp HHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3455555556667666554 667777777887778889999999875443 233333322 6899998
Q ss_pred ecc
Q psy7790 337 ATD 339 (367)
Q Consensus 337 aTd 339 (367)
..-
T Consensus 105 ~nA 107 (287)
T 3pxx_A 105 ANA 107 (287)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 385
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=25.57 E-value=16 Score=29.93 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=12.9
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.|+-+..++|+|+|||
T Consensus 3 ~g~~i~lvGpsGaGKS 18 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKS 18 (198)
T ss_dssp --CCEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4677888999999999
No 386
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=25.56 E-value=2.8e+02 Score=23.86 Aligned_cols=99 Identities=11% Similarity=0.184 Sum_probs=55.4
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeeccH--------HHHHHHHHHHHhCCCeEE---EEecCCCHHHHHHHHHHHhc
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKK--------QDVDAIHEYLLLKGVEAV---AIHGGKDQEERTRSVESFRK 329 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~s~--------~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~~ 329 (367)
++..+...-...+.+.|...+.+-|.|+... ....-+.+.|...|+.+. .++++.+...-...++.+..
T Consensus 156 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~ 235 (332)
T 2hsg_A 156 SVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLE 235 (332)
T ss_dssp EEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHc
Confidence 3445554444555666666665545444221 223445566677776542 45677776665566666644
Q ss_pred -C-CCcEEEecc-c---------ccccCCcC-CCCEEEEcCCC
Q psy7790 330 -G-QKDVMVATD-V---------ASKGLDFE-EIKHVINTEAK 359 (367)
Q Consensus 330 -g-~~~vLVaTd-~---------~~rGlDi~-~v~~VI~yd~P 359 (367)
+ ....++|.+ . -.+|+.+| +|..|=.-|.|
T Consensus 236 ~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvvg~D~~~ 278 (332)
T 2hsg_A 236 EDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTR 278 (332)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCCHHHHCEEEEESCCG
T ss_pred CCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEECChH
Confidence 3 567777765 2 23788887 46555444444
No 387
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=25.50 E-value=23 Score=31.37 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=14.6
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
++.++..+++|+|||+
T Consensus 152 ~~~lll~G~~GtGKT~ 167 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSY 167 (308)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 5889999999999995
No 388
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.48 E-value=3e+02 Score=23.00 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=55.7
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeec-c------HHHHHHHHHHHHhCCCeE---EEEecCCCHHHHHHHHHHHhcC
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAE-K------KQDVDAIHEYLLLKGVEA---VAIHGGKDQEERTRSVESFRKG 330 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~-s------~~~~~~l~~~L~~~~~~~---~~lhg~~~~~~R~~~~~~F~~g 330 (367)
++..+...-.....+.|...+.+-|.|+. . .....-+.+.|...|+.+ ..++++.+...-...+..+...
T Consensus 110 ~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (292)
T 3k4h_A 110 YVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGL 189 (292)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTS
T ss_pred EEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcC
Confidence 34445544455556666666655444442 1 233445556677777653 2456777777766666666543
Q ss_pred --CCcEEEecc----------cccccCCcCCCCEEEEcC
Q psy7790 331 --QKDVMVATD----------VASKGLDFEEIKHVINTE 357 (367)
Q Consensus 331 --~~~vLVaTd----------~~~rGlDi~~v~~VI~yd 357 (367)
..+.++|++ +..+|+.+|+==.||=||
T Consensus 190 ~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 190 QQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp SSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCCcEEEEcChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 567777776 234899987433444444
No 389
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=25.30 E-value=3.1e+02 Score=23.41 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...|...+..+..+.++++..+. ..+++... -|.+++||..-
T Consensus 49 aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 119 (291)
T 3cxt_A 49 AIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNA 119 (291)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 3445555556667777777777777778787767677788888875442 23333322 27789888765
No 390
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=25.23 E-value=34 Score=32.91 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 282 PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 282 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
.++++||.+-..+...+..|+..|+++..+.||+.
T Consensus 525 ~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 525 KEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp SEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 46999999999999999999999999999999854
No 391
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.95 E-value=46 Score=38.85 Aligned_cols=46 Identities=22% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc
Q psy7790 77 SELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
..+.+.....+-.+++.....=.+..+.+...+-++.++|||+|||
T Consensus 892 ~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKT 937 (2695)
T 4akg_A 892 QCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKT 937 (2695)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHH
Confidence 3344444444444444332223345556667888999999999999
No 392
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=24.93 E-value=1.8e+02 Score=20.27 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEecc
Q psy7790 269 KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVATD 339 (367)
Q Consensus 269 k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVaTd 339 (367)
-...+...|...+. .+..+.+...+. ..+......+..+--.|+...-...++.++.. ...+++.|.
T Consensus 12 ~~~~l~~~l~~~g~-~v~~~~~~~~a~---~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 80 (121)
T 2pl1_A 12 LRHHLKVQIQDAGH-QVDDAEDAKEAD---YYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (121)
T ss_dssp HHHHHHHHHHHTTC-EEEEESSHHHHH---HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEES
T ss_pred HHHHHHHHHhhcCC-EEEEeCCHHHHH---HHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEec
Confidence 34445556655443 344555544443 34455566777776555433344555555542 456766665
No 393
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.92 E-value=46 Score=39.51 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcccChHHHhHHHHHHHHHHhHhcccccccccccCCcc
Q psy7790 75 QHSELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKGIQ 122 (367)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~i~~i~~g~d~~~~a~TgsGKT 122 (367)
+...+.+.+...+-.+++.....=.+..+.+...+-+|.++|||+|||
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKT 920 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKT 920 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHH
Confidence 444555555555544544433323344555667788999999999999
No 394
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=24.87 E-value=2.2e+02 Score=24.34 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=43.6
Q ss_pred HHHHHhhcCCCeEEee-ccHHHHHHHHHHHH-hCCCeEEEEecCCCHHH------------------HHHHHHHHh--cC
Q psy7790 273 LLECLQKTEPPVLIFA-EKKQDVDAIHEYLL-LKGVEAVAIHGGKDQEE------------------RTRSVESFR--KG 330 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~-~s~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~------------------R~~~~~~F~--~g 330 (367)
+.+.|...+..+++.+ .+....+.+...|. ..+..+..+..+++..+ -...++.+. -|
T Consensus 25 ia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g 104 (291)
T 1e7w_A 25 IAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWG 104 (291)
T ss_dssp HHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccchHHHHHHHHHHHHHhcC
Confidence 4445555566677777 77777777877776 55667888888876433 223333322 27
Q ss_pred CCcEEEeccc
Q psy7790 331 QKDVMVATDV 340 (367)
Q Consensus 331 ~~~vLVaTd~ 340 (367)
.+++||..--
T Consensus 105 ~iD~lvnnAg 114 (291)
T 1e7w_A 105 RCDVLVNNAS 114 (291)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 8999997653
No 395
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=24.79 E-value=2.7e+02 Score=22.81 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCeEEeecc-HHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEK-KQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s-~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+ ....+.+...+...+..+..+.++++..+. ...++.+. -|.+++||..-
T Consensus 22 ~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~A 93 (258)
T 3afn_B 22 ATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNA 93 (258)
T ss_dssp HHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred HHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3445555556667777766 566777777777777788888898875443 23333332 26788888764
No 396
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=24.46 E-value=16 Score=34.16 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.5
Q ss_pred HhcccccccccccCCccc
Q psy7790 106 AETKALMGVAELAKGIQY 123 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT~ 123 (367)
....++++.++||+|||.
T Consensus 51 ~~~~h~~i~G~tGsGKs~ 68 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSV 68 (437)
T ss_dssp GGGGCEEEEECTTSSHHH
T ss_pred cCcceEEEECCCCCCHHH
Confidence 456789999999999993
No 397
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=24.41 E-value=3.1e+02 Score=22.92 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=57.5
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeec-------cHHHHHHHHHHHHhCCCeEE---EEecCCCHHHHHHHHHHHhc-
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAE-------KKQDVDAIHEYLLLKGVEAV---AIHGGKDQEERTRSVESFRK- 329 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~-------s~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~~- 329 (367)
++..+...-...+.+.|.+.+.+-|.|+. +.....-+.+.|...|+.+. .+++..+...-...++.+..
T Consensus 104 ~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (290)
T 3clk_A 104 FISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKN 183 (290)
T ss_dssp EEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTT
T ss_pred EEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhcc
Confidence 34445544455566666666655444442 13344555666777777542 45677776666666666663
Q ss_pred CCCcEEEecc-c---------ccccCCcC-CCCEEEEcCCC
Q psy7790 330 GQKDVMVATD-V---------ASKGLDFE-EIKHVINTEAK 359 (367)
Q Consensus 330 g~~~vLVaTd-~---------~~rGlDi~-~v~~VI~yd~P 359 (367)
...+.++|++ . ..+|+.+| +|.+|=.-+.|
T Consensus 184 ~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 224 (290)
T 3clk_A 184 TDLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSIDGTE 224 (290)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCChH
Confidence 4567777765 2 23799987 56554444443
No 398
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=24.39 E-value=32 Score=29.82 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.2
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
+..++..+++|+|||.
T Consensus 50 ~~~vll~G~~GtGKT~ 65 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTE 65 (310)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 5789999999999993
No 399
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=24.35 E-value=34 Score=27.58 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=12.9
Q ss_pred ccccccccccCCccc
Q psy7790 109 KALMGVAELAKGIQY 123 (367)
Q Consensus 109 ~d~~~~a~TgsGKT~ 123 (367)
..++..++.|+|||.
T Consensus 39 ~~~ll~G~~G~GKT~ 53 (226)
T 2chg_A 39 PHLLFSGPPGTGKTA 53 (226)
T ss_dssp CCEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 358999999999993
No 400
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=24.32 E-value=2.1e+02 Score=24.05 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...|.. .+..+..+..+++..+ -...++.+. -|.+++||..-
T Consensus 35 aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 106 (266)
T 4egf_A 35 DIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNA 106 (266)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTSCSEEEEEC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34555556666788888888888888887765 4677888888886443 222333322 26888888764
No 401
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.27 E-value=1.1e+02 Score=21.54 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=37.9
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC-HHHHHHHHHHHhcC----CCcE
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD-QEERTRSVESFRKG----QKDV 334 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~-~~~R~~~~~~F~~g----~~~v 334 (367)
+..++.+ .-...+...|...+..+ +.+.+...+.. .+....+.+..+.-.++ ...-...++.++.. ...|
T Consensus 8 ilivdd~~~~~~~l~~~L~~~g~~v-~~~~~~~~a~~---~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 8 ILIVESDTALSATLRSALEGRGFTV-DETTDGKGSVE---QIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEE-EEECCHHHHHH---HHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEeCCHHHHHHHHHHHHhcCceE-EEecCHHHHHH---HHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 3444443 34455566666655444 45555554433 33344567777765554 33344556666543 4555
Q ss_pred EEe
Q psy7790 335 MVA 337 (367)
Q Consensus 335 LVa 337 (367)
++.
T Consensus 84 i~~ 86 (127)
T 2gkg_A 84 VII 86 (127)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 402
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=24.18 E-value=93 Score=27.93 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=38.2
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCHHHHHHHHHHHhcCCCc
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQEERTRSVESFRKGQKD 333 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~ 333 (367)
++||++-....+.+.+.+...|++ +.++..+++..+..++.+.-+....+
T Consensus 83 aVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~r 133 (334)
T 3mwd_B 83 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT 133 (334)
T ss_dssp EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred EEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 788999888788888888878886 45559999987777776666665443
No 403
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=24.11 E-value=3.1e+02 Score=22.82 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHhhcCCCeEE-eeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLI-FAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iV-F~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+..+++ +..+....+.+...+...+..+..+.++++..+ -...++... -|++++||..-
T Consensus 20 ia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 90 (258)
T 3oid_A 20 AAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA 90 (258)
T ss_dssp HHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44555556666666 477888888899999888888999999987544 333333332 27899998764
No 404
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=24.03 E-value=68 Score=30.83 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=30.6
Q ss_pred cCCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCC
Q psy7790 280 TEPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 280 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
...+++|||.+-..+.+.+..|+..|+ ++..+.||+
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 456799999987788999999999999 588888874
No 405
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=23.86 E-value=17 Score=33.18 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=13.7
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.|.-++.+++||||||
T Consensus 122 ~~g~i~I~GptGSGKT 137 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKS 137 (356)
T ss_dssp SSEEEEEECSTTSCHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4557889999999999
No 406
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.80 E-value=2e+02 Score=20.37 Aligned_cols=75 Identities=19% Similarity=0.030 Sum_probs=44.5
Q ss_pred EEEechhhH-HHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC----CCcEE
Q psy7790 261 VEYVKQEAK-IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG----QKDVM 335 (367)
Q Consensus 261 ~~~~~~~~k-~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vL 335 (367)
+..++.+.. ...+...|...+..+. .+.+-.++ ...+......+..+--.|+...-...++.++.. ...|+
T Consensus 5 ILivdd~~~~~~~l~~~l~~~g~~v~-~~~~~~~a---l~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 5 VLLVDDSAVLRKIVSFNLKKEGYEVI-EAENGQIA---LEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEE-EESSHHHH---HHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEeCCHHHHHHHHHHHHHCCcEEE-EeCCHHHH---HHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 445554443 3444555655554444 45544443 344556677888887777766667778887653 46677
Q ss_pred Eecc
Q psy7790 336 VATD 339 (367)
Q Consensus 336 VaTd 339 (367)
+.|.
T Consensus 81 ~~s~ 84 (122)
T 3gl9_A 81 VLTA 84 (122)
T ss_dssp EEES
T ss_pred EEec
Confidence 7775
No 407
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.79 E-value=1.8e+02 Score=20.97 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=47.2
Q ss_pred EEEechh-hHHHHHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc----CCCcE
Q psy7790 261 VEYVKQE-AKIVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK----GQKDV 334 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~v 334 (367)
+..++.+ .-...+...|.. .+..++..+.+..++. ..+......+..+.-.++...-...++.++. ....|
T Consensus 11 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~---~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 11 ILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAG---DLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHH---HHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred EEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHH---HHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 4444444 445556666766 5556466666655544 3445566788888877765555667777776 34567
Q ss_pred EEeccc
Q psy7790 335 MVATDV 340 (367)
Q Consensus 335 LVaTd~ 340 (367)
++.|+.
T Consensus 88 i~~s~~ 93 (143)
T 3cnb_A 88 IAMTGA 93 (143)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 777653
No 408
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=23.67 E-value=55 Score=31.52 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEec-CCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHG-GKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg-~~~ 316 (367)
..+++|||.+-..+...+..|+..|+++..+.| |+.
T Consensus 322 ~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 322 GARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp TCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 456999999988888888999999999999999 763
No 409
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=23.51 E-value=1.3e+02 Score=26.42 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=37.0
Q ss_pred eEEeeccHHHHHHHHHHHHhCCCe-EEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 284 VLIFAEKKQDVDAIHEYLLLKGVE-AVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 284 ~iVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
++||++.. .+..+...+...|++ +..+..+++..+..++.+.-+...+. ++.-+
T Consensus 75 aIi~vp~~-~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 129 (297)
T 2yv2_A 75 SIVFVPAP-FAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN 129 (297)
T ss_dssp EEECCCGG-GHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred EEEecCHH-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 67787764 555566666678998 67779999988777777766665443 44444
No 410
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=23.43 E-value=19 Score=29.50 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=12.4
Q ss_pred ccccccccccCCcc
Q psy7790 109 KALMGVAELAKGIQ 122 (367)
Q Consensus 109 ~d~~~~a~TgsGKT 122 (367)
|-++.++|.|+|||
T Consensus 2 RpIVi~GPSG~GK~ 15 (186)
T 1ex7_A 2 RPIVISGPSGTGKS 15 (186)
T ss_dssp CCEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 45788999999999
No 411
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.22 E-value=1.6e+02 Score=21.72 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=40.8
Q ss_pred EEEEechhhH-HHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc------CCC
Q psy7790 260 EVEYVKQEAK-IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK------GQK 332 (367)
Q Consensus 260 ~~~~~~~~~k-~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~------g~~ 332 (367)
.+..++.+.. ...+..+|...+..+. .+.+...+ ...+....+.+..+--.|+...-...++.++. ...
T Consensus 16 ~iLivdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~a---l~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~ 91 (143)
T 3m6m_D 16 RMLVADDHEANRMVLQRLLEKAGHKVL-CVNGAEQV---LDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYT 91 (143)
T ss_dssp EEEEECSSHHHHHHHHHHHHC--CEEE-EESSHHHH---HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEE-EeCCHHHH---HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCC
Confidence 3455555443 4445556665554444 44444433 34455667788888766655445555555542 235
Q ss_pred cEEEecc
Q psy7790 333 DVMVATD 339 (367)
Q Consensus 333 ~vLVaTd 339 (367)
.|++.|.
T Consensus 92 pii~~s~ 98 (143)
T 3m6m_D 92 PVVVLSA 98 (143)
T ss_dssp CEEEEES
T ss_pred eEEEEeC
Confidence 6777665
No 412
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=22.84 E-value=3e+02 Score=22.20 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=48.2
Q ss_pred HHHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCCCcEEEec
Q psy7790 272 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQKDVMVAT 338 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~vLVaT 338 (367)
.|..+|...+-..||+| .|.-++...+..+...|+++..+ +++.+......+++.++..-. .+++|
T Consensus 132 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~as~~~~~h~~al~~~~~~~~-~v~~t 202 (207)
T 1nf9_A 132 DLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCA-MVVTT 202 (207)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHHHHTC-EEECH
T ss_pred cHHHHHHHcCCCEEEEEeeecChHHHHHHHHHHHCCCEEEEeCcccCCCCHHHHHHHHHHHHHhCc-EEccH
Confidence 36667777777778887 55667888888888899998887 677888888888888765322 34444
No 413
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=22.80 E-value=34 Score=30.85 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=14.2
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.++.++..+|+|+|||
T Consensus 50 ~~~~vll~GppGtGKT 65 (363)
T 3hws_A 50 GKSNILLIGPTGSGKT 65 (363)
T ss_dssp CCCCEEEECCTTSSHH
T ss_pred CCCeEEEECCCCCCHH
Confidence 4567999999999999
No 414
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.79 E-value=1.9e+02 Score=19.91 Aligned_cols=75 Identities=16% Similarity=0.063 Sum_probs=39.1
Q ss_pred EEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc--CCCcEEEec
Q psy7790 262 EYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK--GQKDVMVAT 338 (367)
Q Consensus 262 ~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLVaT 338 (367)
..++.+ .-...+...|...+. .+..+.+...+. ..+......+..+--.|+...-...++.++. ....|++.|
T Consensus 5 livdd~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~---~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 80 (116)
T 3a10_A 5 LVVDDEPNIRELLKEELQEEGY-EIDTAENGEEAL---KKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT 80 (116)
T ss_dssp EEECSCHHHHHHHHHHHHHTTC-EEEEESSHHHHH---HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHCCC-EEEEeCCHHHHH---HHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEE
Confidence 344443 334445556665444 344566554443 3445556677776655543333445555543 346677666
Q ss_pred cc
Q psy7790 339 DV 340 (367)
Q Consensus 339 d~ 340 (367)
..
T Consensus 81 ~~ 82 (116)
T 3a10_A 81 AY 82 (116)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 415
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=22.70 E-value=40 Score=29.87 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=13.0
Q ss_pred ccccccccccCCcc
Q psy7790 109 KALMGVAELAKGIQ 122 (367)
Q Consensus 109 ~d~~~~a~TgsGKT 122 (367)
..++..+++|+|||
T Consensus 56 ~~vll~G~~GtGKT 69 (338)
T 3pfi_A 56 DHILFSGPAGLGKT 69 (338)
T ss_dssp CCEEEECSTTSSHH
T ss_pred CeEEEECcCCCCHH
Confidence 57999999999999
No 416
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=22.51 E-value=3.4e+02 Score=22.59 Aligned_cols=99 Identities=6% Similarity=0.007 Sum_probs=55.7
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeec-c------HHHHHHHHHHHHhCCCeEE---EEecCCCHHHHHHHHHHHhc-
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAE-K------KQDVDAIHEYLLLKGVEAV---AIHGGKDQEERTRSVESFRK- 329 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~-s------~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~~- 329 (367)
++..+...-...+.+.|.+.+.+-|.|+. . .....-+.+.|...|+.+. .+++..+...-...++.+..
T Consensus 105 ~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 184 (289)
T 1dbq_A 105 AVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQ 184 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTS
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhC
Confidence 34445544445555666555655444442 2 2344556667777776542 34566666655566666654
Q ss_pred -CCCcEEEecc----------cccccCCcC-CCCEEEEcCCC
Q psy7790 330 -GQKDVMVATD----------VASKGLDFE-EIKHVINTEAK 359 (367)
Q Consensus 330 -g~~~vLVaTd----------~~~rGlDi~-~v~~VI~yd~P 359 (367)
...+.++|++ +..+|+.+| +|..|=.-+.|
T Consensus 185 ~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~ 226 (289)
T 1dbq_A 185 PHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVR 226 (289)
T ss_dssp SSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCCch
Confidence 3677777775 233799987 45544444444
No 417
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=22.42 E-value=2e+02 Score=20.05 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=38.2
Q ss_pred EEEechhh-HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc-CCCcEEEec
Q psy7790 261 VEYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK-GQKDVMVAT 338 (367)
Q Consensus 261 ~~~~~~~~-k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~-g~~~vLVaT 338 (367)
+..++.+. -...+...|...+.. +..+.+...+. ..+......+..+--.|+...-...++.++. ....+++.|
T Consensus 6 ilivdd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~---~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 6 ILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMH---QILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHH---HHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHhhCCcE-EEEeCCHHHHH---HHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 34444443 344455566554443 44555554443 3445556677776555543333444444443 456677666
Q ss_pred c
Q psy7790 339 D 339 (367)
Q Consensus 339 d 339 (367)
.
T Consensus 82 ~ 82 (123)
T 1xhf_A 82 G 82 (123)
T ss_dssp S
T ss_pred C
Confidence 5
No 418
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.41 E-value=1.8e+02 Score=20.93 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=43.2
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEe
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVA 337 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVa 337 (367)
+..++.+ .-...+...|.. .+..+..+.+...+.. .+....+.+..+--.++...-...++.++.. ...|++.
T Consensus 10 ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~a~~---~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (137)
T 3hdg_A 10 ILIVEDDTDAREWLSTIISN-HFPEVWSAGDGEEGER---LFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVI 85 (137)
T ss_dssp EEEECSCHHHHHHHHHHHHT-TCSCEEEESSHHHHHH---HHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHh-cCcEEEEECCHHHHHH---HHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 3444444 344555666665 3334445555554433 3444467788887666655556666666653 4567777
Q ss_pred ccc
Q psy7790 338 TDV 340 (367)
Q Consensus 338 Td~ 340 (367)
|+.
T Consensus 86 s~~ 88 (137)
T 3hdg_A 86 SAF 88 (137)
T ss_dssp CCC
T ss_pred ecC
Confidence 763
No 419
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=22.40 E-value=2.3e+02 Score=23.19 Aligned_cols=68 Identities=7% Similarity=0.139 Sum_probs=42.9
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCC-CeEEEEecCC--C-HHHHHHHHHHHhc--CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG-VEAVAIHGGK--D-QEERTRSVESFRK--GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~--~-~~~R~~~~~~F~~--g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+ ..+..+..++ + ...-...++.+.. |.+++||..-
T Consensus 29 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~g~id~lv~nA 102 (247)
T 3i1j_A 29 AAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNA 102 (247)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3455555666678888888888888888887665 3455555555 2 3333334443322 6788888764
No 420
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=22.38 E-value=3.3e+02 Score=22.49 Aligned_cols=68 Identities=24% Similarity=0.184 Sum_probs=45.0
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...+...+..+..+..+++..+- ...++... -|.+++||..-
T Consensus 17 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA 87 (256)
T 1geg_A 17 AIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNA 87 (256)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3445555556677777777777778888887767778888888875432 23333222 26889988764
No 421
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.36 E-value=3.4e+02 Score=22.63 Aligned_cols=98 Identities=7% Similarity=0.095 Sum_probs=0.0
Q ss_pred EEEEechhhHHHHHHHHHhhcCCCeEEee-------ccHHHHHHHHHHHHhCCCeEE---EEecCCCHHHHHHHHHHHh-
Q psy7790 260 EVEYVKQEAKIVYLLECLQKTEPPVLIFA-------EKKQDVDAIHEYLLLKGVEAV---AIHGGKDQEERTRSVESFR- 328 (367)
Q Consensus 260 ~~~~~~~~~k~~~l~~~l~~~~~~~iVF~-------~s~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~- 328 (367)
.++..+...-...+.+.|.+.+.+-|.|+ .+.....-+.+.|...|+.+. ...++.+...-...+..+.
T Consensus 103 ~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (291)
T 3egc_A 103 GAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLT 182 (291)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHT
T ss_pred CEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHh
Q ss_pred -cCCCcEEEecc----------cccccCCcCCCCEEEEcC
Q psy7790 329 -KGQKDVMVATD----------VASKGLDFEEIKHVINTE 357 (367)
Q Consensus 329 -~g~~~vLVaTd----------~~~rGlDi~~v~~VI~yd 357 (367)
....+.++|++ +..+|+.+|+==.||=||
T Consensus 183 ~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 183 GADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp C-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred CCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEec
No 422
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=22.34 E-value=3.6e+02 Score=22.82 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCeEEeeccH-HHHHHHHHHHH-hCCCeEEEEecCCCH-----HHHHHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKK-QDVDAIHEYLL-LKGVEAVAIHGGKDQ-----EERTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~-~~~~~l~~~L~-~~~~~~~~lhg~~~~-----~~R~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+..+++.+.+. ...+.+...+. ..+-.+..+.++++. ..-..+++.+. -|.+++||..-
T Consensus 39 ia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnA 114 (288)
T 2x9g_A 39 IAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNA 114 (288)
T ss_dssp HHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4444555566677777666 67777777776 556678888898875 33334444332 27899999765
No 423
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=22.24 E-value=33 Score=30.28 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=15.0
Q ss_pred HhcccccccccccCCcc
Q psy7790 106 AETKALMGVAELAKGIQ 122 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT 122 (367)
..+..++..+++|+|||
T Consensus 23 ~~~~~vLi~Ge~GtGKt 39 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKE 39 (304)
T ss_dssp STTSCEEEESCTTSCHH
T ss_pred CCCCcEEEECCCCchHH
Confidence 45678999999999999
No 424
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.18 E-value=1.3e+02 Score=22.52 Aligned_cols=75 Identities=5% Similarity=-0.126 Sum_probs=38.8
Q ss_pred EEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc--CCCcEEEec
Q psy7790 262 EYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK--GQKDVMVAT 338 (367)
Q Consensus 262 ~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLVaT 338 (367)
..++.. .-...+...|...+.. ++.+.+...+. ..+....+.+..+.-.++...-...++.++. ....|++.|
T Consensus 7 Livdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~---~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls 82 (155)
T 1qkk_A 7 FLIDDDRDLRKAMQQTLELAGFT-VSSFASATEAL---AGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVT 82 (155)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCE-EEEESCHHHHH---HTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCcE-EEEECCHHHHH---HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 344433 3444555666655444 34555544433 3444456677777655543333444444443 356777776
Q ss_pred cc
Q psy7790 339 DV 340 (367)
Q Consensus 339 d~ 340 (367)
+.
T Consensus 83 ~~ 84 (155)
T 1qkk_A 83 GH 84 (155)
T ss_dssp CG
T ss_pred CC
Confidence 53
No 425
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=22.18 E-value=49 Score=32.04 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=31.9
Q ss_pred CCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..++++||.+-..+...+..|+..|+.+..+.||+.
T Consensus 541 ~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 541 DKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 356999999999999999999999999888999854
No 426
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=22.01 E-value=18 Score=29.68 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=15.6
Q ss_pred hHhcccccccccccCCcc
Q psy7790 105 VAETKALMGVAELAKGIQ 122 (367)
Q Consensus 105 i~~g~d~~~~a~TgsGKT 122 (367)
...|+-++.+++.|+|||
T Consensus 9 ~~~~~~i~l~G~sGsGKs 26 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKG 26 (204)
T ss_dssp CCCCCCEEEECCTTSCHH
T ss_pred cccCCEEEEECCCCCCHH
Confidence 456778889999999999
No 427
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=21.96 E-value=20 Score=29.20 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=14.5
Q ss_pred HhcccccccccccCCcc
Q psy7790 106 AETKALMGVAELAKGIQ 122 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT 122 (367)
..|+-++.+++.|+|||
T Consensus 23 ~~~~~i~l~G~~GsGKs 39 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKT 39 (199)
T ss_dssp -CCCEEEEECCTTSCHH
T ss_pred CCCCEEEEEcCCCCCHH
Confidence 35778899999999999
No 428
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=21.94 E-value=18 Score=29.93 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=15.0
Q ss_pred HhcccccccccccCCcc
Q psy7790 106 AETKALMGVAELAKGIQ 122 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT 122 (367)
+.|+=++.++|+|+|||
T Consensus 17 ~~g~~ivl~GPSGaGKs 33 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRS 33 (197)
T ss_dssp CSCCEEEEECCTTSSHH
T ss_pred CCCCEEEEECcCCCCHH
Confidence 46777889999999999
No 429
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.94 E-value=1.9e+02 Score=20.21 Aligned_cols=76 Identities=7% Similarity=0.006 Sum_probs=38.5
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc----CCCcEE
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK----GQKDVM 335 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~vL 335 (367)
+..++.+ .-...+...|...+..+ +.+.+...+. ..+......+..+--.|+...-...++.++. ....|+
T Consensus 4 ilivdd~~~~~~~l~~~L~~~~~~v-~~~~~~~~a~---~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 4 VLIVEDNELNMKLFHDLLEAQGYET-LQTREGLSAL---SIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEE-EEESCHHHHH---HHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcCcEE-EEeCCHHHHH---HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 3344443 33445555666544443 3444444433 3344445667776655554344556666664 246777
Q ss_pred Eeccc
Q psy7790 336 VATDV 340 (367)
Q Consensus 336 VaTd~ 340 (367)
+.|..
T Consensus 80 ~~s~~ 84 (124)
T 1mb3_A 80 AVTAF 84 (124)
T ss_dssp EEC--
T ss_pred EEECC
Confidence 77763
No 430
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=21.89 E-value=1.8e+02 Score=20.77 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=39.2
Q ss_pred EEEechhhH-HHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEEe
Q psy7790 261 VEYVKQEAK-IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMVA 337 (367)
Q Consensus 261 ~~~~~~~~k-~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVa 337 (367)
+..++.... ...+...|...+.. +..+.+...+.. .+....+.+..+--.|+...-...++.++.. ...|++.
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~a~~---~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 6 ILVVDDEESIVTLLQYNLERSGYD-VITASDGEEALK---KAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHHH---HHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCcE-EEEecCHHHHHH---HHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 344544433 34455556554443 445555554443 3444456777776555443344555665543 4567766
Q ss_pred cc
Q psy7790 338 TD 339 (367)
Q Consensus 338 Td 339 (367)
|.
T Consensus 82 s~ 83 (136)
T 1mvo_A 82 TA 83 (136)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 431
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=21.84 E-value=2.1e+02 Score=20.00 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=31.4
Q ss_pred CCeEEee-ccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHH
Q psy7790 282 PPVLIFA-EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSV 324 (367)
Q Consensus 282 ~~~iVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~ 324 (367)
.++.||. +++-.|..+..+|...|+....+.=..+...+....
T Consensus 16 ~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~ 59 (99)
T 3qmx_A 16 AKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMA 59 (99)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHH
T ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHH
Confidence 4677775 667888888899988888887777666665554443
No 432
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=21.82 E-value=3.6e+02 Score=22.66 Aligned_cols=127 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHhhccCCceEEeecCCCcHHHHHHHHHhcCCCEEEEeCCCCccCCCCcceEEEEEechhhHHHHHHHHHhhcCCCe
Q psy7790 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPV 284 (367)
Q Consensus 205 v~~Il~~l~~~~Q~il~SAT~~~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 284 (367)
.+.+++.+++.+.+.+++..-..........+.. .....+. ....+...........-...+..+|..++.+.
T Consensus 117 ~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~-----~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (305)
T 3g1w_A 117 AYKMAELLDGEGEVAVITLPNQLNHQERTTGFKE-----TLEAEFP--AIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLA 189 (305)
T ss_dssp HHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHH-----HHHHHCT--TEEEEEEEECTTCHHHHHHHHHHHHHHCTTEE
T ss_pred HHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHH-----HHHhhCC--CCEEEEEecCCCCHHHHHHHHHHHHHhCCCce
Q ss_pred EEeeccHHHHHHHHHHHHhCCC----eEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccccccc
Q psy7790 285 LIFAEKKQDVDAIHEYLLLKGV----EAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKG 344 (367)
Q Consensus 285 iVF~~s~~~~~~l~~~L~~~~~----~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~~~rG 344 (367)
.|||.+-..+..+...|+..|+ .+..+-+. ...+..+..+.+...|..+....|
T Consensus 190 ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~------~~~~~~~~~~~l~ttv~~~~~~~g 247 (305)
T 3g1w_A 190 GIFATEANGGVGVGDAVRLESRAGEIQIISFDTD------KGTLDLVDEGIISATLAQGTWNMG 247 (305)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCC------HHHHHHHHTTSSCEEEEECHHHHH
T ss_pred EEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCC------HHHHHHHHcCceEEEEecChHHHH
No 433
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=21.81 E-value=3.3e+02 Score=22.32 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+..+++...+....+.+...|...+..+..+.++++..+. ..+++... .|.+++||..-
T Consensus 28 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~A 98 (260)
T 3awd_A 28 ACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACA 98 (260)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3555555556678888887777777888887777778888888865432 23333322 26788888764
No 434
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=21.75 E-value=54 Score=28.61 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=27.2
Q ss_pred CCCeEEeecc--HH-HHHHHHHHHHhCCC-eEEEEecCC
Q psy7790 281 EPPVLIFAEK--KQ-DVDAIHEYLLLKGV-EAVAIHGGK 315 (367)
Q Consensus 281 ~~~~iVF~~s--~~-~~~~l~~~L~~~~~-~~~~lhg~~ 315 (367)
..+++|||.+ -. .+.+++..|+..|+ ++..+.||+
T Consensus 92 ~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 92 DTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp TCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 3468999987 33 47788888999998 588888874
No 435
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=21.72 E-value=3.6e+02 Score=22.67 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+.. .+..+..+..+++..+- ...++.+. -|.+++||..-
T Consensus 42 aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 113 (277)
T 4fc7_A 42 RIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCA 113 (277)
T ss_dssp HHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 35555556666788888887777777777743 36788889999875432 33333332 27899998765
No 436
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=21.70 E-value=3e+02 Score=22.69 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHhh-cCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHhc--CCCcEEEecc
Q psy7790 272 YLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFRK--GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~~--g~~~vLVaTd 339 (367)
.+.+.|.. .+..+++.+.+....+.+...|...+..+..+.++++..+ -..+++.+.. |.+++||..-
T Consensus 19 ~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A 90 (276)
T 1wma_A 19 AIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNA 90 (276)
T ss_dssp HHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred HHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34444555 5667888888877778887888776667778888876543 3333333322 5788888654
No 437
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=21.69 E-value=24 Score=30.12 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=13.3
Q ss_pred cccccccccccCCcc
Q psy7790 108 TKALMGVAELAKGIQ 122 (367)
Q Consensus 108 g~d~~~~a~TgsGKT 122 (367)
.+.++..+++|+|||
T Consensus 44 ~~~vll~G~~GtGKT 58 (268)
T 2r62_A 44 PKGVLLVGPPGTGKT 58 (268)
T ss_dssp CSCCCCBCSSCSSHH
T ss_pred CceEEEECCCCCcHH
Confidence 456899999999999
No 438
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=21.66 E-value=3.7e+02 Score=22.83 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred HHHHHHhhcCCCeEEeeccH-HHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKK-QDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~-~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+. ...+.+...+...+..+..+.++++..+- ...++.+. -|.+++||..-
T Consensus 62 aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 133 (291)
T 3ijr_A 62 AVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNV 133 (291)
T ss_dssp HHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34555555566666665544 35666777777778889999999875443 33333332 26889988764
No 439
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.66 E-value=1.6e+02 Score=21.24 Aligned_cols=78 Identities=9% Similarity=0.034 Sum_probs=43.3
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHHHhcC--CCcEEE
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEERTRSVESFRKG--QKDVMV 336 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLV 336 (367)
+..++.+ .-...+...|...+. .+..+.+..++. ..+.. ..+.+..+--.|+...-...++.++.. ...|++
T Consensus 18 ilivdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~al---~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ 93 (138)
T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQLGA-EVTVHPSGSAFF---QHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 93 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTC-EEEEESSHHHHH---HTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHcCC-EEEEeCCHHHHH---HHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 4445544 344555566665544 344555544433 34455 567777777666654456667777653 466777
Q ss_pred ec-cccc
Q psy7790 337 AT-DVAS 342 (367)
Q Consensus 337 aT-d~~~ 342 (367)
.| ....
T Consensus 94 ls~~~~~ 100 (138)
T 2b4a_A 94 LTTGRHE 100 (138)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 76 5433
No 440
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=21.65 E-value=20 Score=29.47 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=13.3
Q ss_pred hcccccccccccCCcc
Q psy7790 107 ETKALMGVAELAKGIQ 122 (367)
Q Consensus 107 ~g~d~~~~a~TgsGKT 122 (367)
.|+=++.++|+|+|||
T Consensus 7 ~g~~i~l~GpsGsGKs 22 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKG 22 (208)
T ss_dssp CCCEEEEECCTTSCHH
T ss_pred CCcEEEEECcCCCCHH
Confidence 4556778899999999
No 441
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=21.53 E-value=96 Score=26.62 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=36.2
Q ss_pred eeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 287 FAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 287 F~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
|.+-...++.+.+.|+ -.+-++..|++.+.++ +++..+-.|+++++|.|.
T Consensus 121 ~~~pf~~~~~~v~~lk-~d~IIv~~H~g~tsek--~~la~~~dg~Vd~VvGgH 170 (252)
T 2z06_A 121 LDDPFRALDRLLEEEK-ADYVLVEVHAEATSEK--MALAHYLDGRASAVLGTH 170 (252)
T ss_dssp CCCHHHHHHHHHHHCC-CSEEEEEEECSCHHHH--HHHHHHHBTTBSEEEEES
T ss_pred cCCHHHHHHHHHHHhC-CCEEEEEeCCCcHHHH--HHHHHhCCCCeEEEEcCC
Confidence 4444455667777776 5667788899987653 456677889999999886
No 442
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=21.51 E-value=1.8e+02 Score=20.18 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=35.3
Q ss_pred EEechhh-HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc-CCCcEEEecc
Q psy7790 262 EYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK-GQKDVMVATD 339 (367)
Q Consensus 262 ~~~~~~~-k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~-g~~~vLVaTd 339 (367)
..++.+. -...+...+...+..+ +.+.+...+- ..+......+..+--.|+...-...++.++. ....|++.|.
T Consensus 5 livdd~~~~~~~l~~~l~~~~~~v-~~~~~~~~a~---~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~ 80 (120)
T 2a9o_A 5 LIVDDEKPISDIIKFNMTKEGYEV-VTAFNGREAL---EQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSA 80 (120)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEE-EEESSHHHHH---HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEES
T ss_pred EEEcCCHHHHHHHHHHHHhcCcEE-EEecCHHHHH---HHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEec
Confidence 3444433 3344555565544434 4555544433 2333445667776555443223334444432 3466766655
No 443
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=21.44 E-value=19 Score=29.25 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=14.2
Q ss_pred HhcccccccccccCCcc
Q psy7790 106 AETKALMGVAELAKGIQ 122 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT 122 (367)
..|.-+..+++.|||||
T Consensus 4 ~~g~~i~l~G~~GsGKS 20 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKG 20 (207)
T ss_dssp CCCCEEEEECSTTSCHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 35666788999999999
No 444
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=21.43 E-value=3.6e+02 Score=22.50 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=50.2
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEee-cc------HHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHH--Hhc-C
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFA-EK------KQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVES--FRK-G 330 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~-~s------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~--F~~-g 330 (367)
++..+...-...+.+.|...+.+-|.|+ .. .....-+.+.|...|+.+..+.+..+...-...++. +.. +
T Consensus 103 ~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (285)
T 3c3k_A 103 SVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSA 182 (285)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSS
T ss_pred EEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCC
Confidence 3444544444455565655555544443 21 223334445566667654345565554444455555 544 3
Q ss_pred -CCcEEEecc-c---------ccccCCcCCCCEEEEcC
Q psy7790 331 -QKDVMVATD-V---------ASKGLDFEEIKHVINTE 357 (367)
Q Consensus 331 -~~~vLVaTd-~---------~~rGlDi~~v~~VI~yd 357 (367)
..+.++|++ . -.+|+.+|+==.||=||
T Consensus 183 ~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vvg~d 220 (285)
T 3c3k_A 183 VKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFD 220 (285)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred CCCeEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 567777765 2 23799887433444444
No 445
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=21.26 E-value=2.6e+02 Score=20.82 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=38.8
Q ss_pred CeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 283 PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 283 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
+.+|-+.-+.++..|.+.+. ....+.+.+|.++......+.+..+ ...|+|-||-
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~-~~~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD~ 59 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLN-EPVVIVCTNGTISDARLEELADELE--GYDVYLLADA 59 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBS-SCCEEEECCSCCCHHHHHHHHHHTT--TSEEEEECCS
T ss_pred CeEEEEechHHHHHHHHhcC-CCCCEEEeCCccCHHHHHHHHHHhc--CCCEEEEECC
Confidence 45788888999888866631 1457888899987766555554443 5679999984
No 446
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2
Probab=21.24 E-value=4e+02 Score=23.24 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCCeEEee-ccHHHHHHHHHHHH-hCCCeEEEEecCCCHHH------------------HHHHHHHHh--c
Q psy7790 272 YLLECLQKTEPPVLIFA-EKKQDVDAIHEYLL-LKGVEAVAIHGGKDQEE------------------RTRSVESFR--K 329 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~-~s~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~------------------R~~~~~~F~--~ 329 (367)
.+.+.|...+..+++.+ .+....+.+...|. ..+..+..+..+++..+ -..+++.+. -
T Consensus 61 aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 140 (328)
T 2qhx_A 61 SIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHW 140 (328)
T ss_dssp HHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccccccHHHHHHHHHHHHHhc
Confidence 34555555566777777 77777777777776 45667888888876433 223333322 2
Q ss_pred CCCcEEEeccc
Q psy7790 330 GQKDVMVATDV 340 (367)
Q Consensus 330 g~~~vLVaTd~ 340 (367)
|.+++||..--
T Consensus 141 g~iD~lVnnAG 151 (328)
T 2qhx_A 141 GRCDVLVNNAS 151 (328)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 68999987653
No 447
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=21.22 E-value=22 Score=29.64 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=14.2
Q ss_pred HhcccccccccccCCcc
Q psy7790 106 AETKALMGVAELAKGIQ 122 (367)
Q Consensus 106 ~~g~d~~~~a~TgsGKT 122 (367)
..|+=+..++|+|+|||
T Consensus 21 ~~G~~~~lvGpsGsGKS 37 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKG 37 (218)
T ss_dssp -CCCCEEEECSTTSSHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 45777888999999999
No 448
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=21.21 E-value=3.7e+02 Score=22.60 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=43.6
Q ss_pred HHHHHhhcCCCeEEe-eccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIF-AEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF-~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+..+++. .+.....+.+...+...+..+..+.++++..+- ...++... -|.+++||..-
T Consensus 47 ia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 117 (271)
T 3v2g_A 47 IAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSA 117 (271)
T ss_dssp HHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 444555556565555 455677788888888888888889998875442 33333332 26889998765
No 449
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=21.14 E-value=82 Score=28.69 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=27.2
Q ss_pred CCCeEEee-ccH-HHHHHHHHHHHhCCCeEEEEecCCC
Q psy7790 281 EPPVLIFA-EKK-QDVDAIHEYLLLKGVEAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~-~s~-~~~~~l~~~L~~~~~~~~~lhg~~~ 316 (367)
..+++||| .+- ..+.+++..|+..|+++..+.||+.
T Consensus 95 d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 95 ELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 45799999 443 3334778888888999999999964
No 450
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Probab=21.12 E-value=49 Score=28.40 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=34.8
Q ss_pred EecCCCHHHHHHHHHHHhcCC--Cc-EEEecc------cccccCCcCCCCEEEEcCCCC
Q psy7790 311 IHGGKDQEERTRSVESFRKGQ--KD-VMVATD------VASKGLDFEEIKHVINTEAKI 360 (367)
Q Consensus 311 lhg~~~~~~R~~~~~~F~~g~--~~-vLVaTd------~~~rGlDi~~v~~VI~yd~P~ 360 (367)
+.++-.|..|.+++.-.|+-+ .. |+|-|- +++--+--.+|++|.||-+|.
T Consensus 190 iRSDRaQN~RsEaLNLIRnRKGr~PHIvvVTaEPlPSRlaSlAlGTGDIDcVYHfAL~E 248 (286)
T 1fiu_A 190 IRSDRAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEIDCVYHFALYE 248 (286)
T ss_dssp CCTTGGGHHHHHHHHHHHHCSSSCCEEEEEECCCCHHHHHHHHSSSSSCSEEEETTHHH
T ss_pred eechhhhhhHHHHHHHHHhccCCCCeEEEEeCCCChHHHHHHHccCCccceeeehhHHH
Confidence 456778999999998887744 33 444443 344445567999999998874
No 451
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.05 E-value=2.3e+02 Score=20.15 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=43.5
Q ss_pred EEEechh-hHHHHHHHHHhhcCCC-eEEeeccHHHHHHHHHHHHh-------CCCeEEEEecCCCHHHHHHHHHHHhcC-
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLL-------KGVEAVAIHGGKDQEERTRSVESFRKG- 330 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~-~iVF~~s~~~~~~l~~~L~~-------~~~~~~~lhg~~~~~~R~~~~~~F~~g- 330 (367)
+..++.. .-...+...|...+.. .+..+.+..++. ..+.. ..+.+..+.-.|+...-...++.++..
T Consensus 5 ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~---~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 5 IFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAM---AYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp EEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHH---HHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHH---HHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 3444443 3445566666665542 455555554443 44544 467788887666554455666666653
Q ss_pred ---CCcEEEeccc
Q psy7790 331 ---QKDVMVATDV 340 (367)
Q Consensus 331 ---~~~vLVaTd~ 340 (367)
...|++.|+.
T Consensus 82 ~~~~~pii~ls~~ 94 (140)
T 1k68_A 82 TLKRIPVVVLSTS 94 (140)
T ss_dssp TGGGSCEEEEESC
T ss_pred ccccccEEEEecC
Confidence 4567766653
No 452
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=21.02 E-value=2.3e+02 Score=20.24 Aligned_cols=76 Identities=11% Similarity=-0.056 Sum_probs=38.9
Q ss_pred EEEechhh-HHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhc--CCCcEEEe
Q psy7790 261 VEYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK--GQKDVMVA 337 (367)
Q Consensus 261 ~~~~~~~~-k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLVa 337 (367)
+..++.+. -...+...|...+.. ++.+.+..++- ..+......+..+--.|+...-...++.++. ....|++.
T Consensus 6 Ilivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al---~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (132)
T 3crn_A 6 ILIVDDDTAILDSTKQILEFEGYE-VEIAATAGEGL---AKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMV 81 (132)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCE-EEEESSHHHHH---HHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHCCce-EEEeCCHHHHH---HHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEE
Confidence 34444443 344455566554443 44555554443 3444556677777655543333444444443 34677776
Q ss_pred ccc
Q psy7790 338 TDV 340 (367)
Q Consensus 338 Td~ 340 (367)
|..
T Consensus 82 s~~ 84 (132)
T 3crn_A 82 TGY 84 (132)
T ss_dssp ESC
T ss_pred ecc
Confidence 653
No 453
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=20.95 E-value=2e+02 Score=23.54 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhc--CCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRK--GQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~--g~~~vLVaTd 339 (367)
.|...|...+-..||+| .|.-++...+..+...|+.+..+ .++.+......+++.++. .....+++|+
T Consensus 100 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~as~~~~~h~~aL~~m~~~~~~g~~v~t~e 174 (204)
T 1yzv_A 100 QVMPLVDLPEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAVDGCGSQSQGDHCTAIQLMQSWSGDGCYISTSE 174 (204)
T ss_dssp TTHHHHSSTTEEEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHHTTGGGTEEEECHH
T ss_pred HHHHHHHhCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEECCccCCCCHHHHHHHHHHHHHHhcCCeEEeCHH
Confidence 57777777776777777 66778888888888999998877 678889999999998872 2223345554
No 454
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=20.86 E-value=3.3e+02 Score=22.47 Aligned_cols=68 Identities=4% Similarity=-0.020 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCC-CeEEEEecCC--C-HHHHHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG-VEAVAIHGGK--D-QEERTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~--~-~~~R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...+...+ ..+..+..++ + ...-...++.+. -|.+++||..-
T Consensus 27 aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~nA 100 (252)
T 3f1l_A 27 EAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNA 100 (252)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHCSCCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3445555566678888888888888877776543 3566777776 3 333344444432 36888888765
No 455
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=20.85 E-value=3.1e+02 Score=22.75 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=40.5
Q ss_pred HHHHHhhcCCCeEEeeccHHH-HHHHHHHHHhC-CCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 273 LLECLQKTEPPVLIFAEKKQD-VDAIHEYLLLK-GVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~~s~~~-~~~l~~~L~~~-~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
+.+.|...+..+++...+... .+.+...+... +..+..+.++++..+. ...++... -|.+++||..-
T Consensus 20 ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~A 91 (260)
T 1x1t_A 20 IATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNA 91 (260)
T ss_dssp HHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 444555556666666665555 66676666544 5677788888875442 22333221 26889888764
No 456
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=20.81 E-value=2.4e+02 Score=20.32 Aligned_cols=75 Identities=7% Similarity=-0.009 Sum_probs=39.4
Q ss_pred EEEechh-hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcC-CCcEEEec
Q psy7790 261 VEYVKQE-AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG-QKDVMVAT 338 (367)
Q Consensus 261 ~~~~~~~-~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVaT 338 (367)
+..++.+ .-...+...|...+.. +..+.+...+- ..+......+..+--.|+...-...++.++.. ...|++.|
T Consensus 7 Ilivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al---~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls 82 (136)
T 2qzj_A 7 ILIIDGDKDNCQKLKGFLEEKGIS-IDLAYNCEEAI---GKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMT 82 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCE-EEEESSHHHHH---HHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCE-EEEECCHHHHH---HHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEE
Confidence 3444444 3445555666654443 34455444433 34445566777765555443345566666643 56677666
Q ss_pred c
Q psy7790 339 D 339 (367)
Q Consensus 339 d 339 (367)
.
T Consensus 83 ~ 83 (136)
T 2qzj_A 83 Y 83 (136)
T ss_dssp S
T ss_pred c
Confidence 5
No 457
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=20.76 E-value=48 Score=29.30 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=13.3
Q ss_pred cccccccccccCCcc
Q psy7790 108 TKALMGVAELAKGIQ 122 (367)
Q Consensus 108 g~d~~~~a~TgsGKT 122 (367)
.+.++..+|.|+|||
T Consensus 51 ~~~vLl~GppGtGKT 65 (322)
T 3eie_A 51 TSGILLYGPPGTGKS 65 (322)
T ss_dssp CCEEEEECSSSSCHH
T ss_pred CCeEEEECCCCCcHH
Confidence 356899999999999
No 458
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=20.72 E-value=2.7e+02 Score=20.73 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCC-eEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 268 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGV-EAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 268 ~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
.++..+.+.|.......+|-|.-+.++..+.++ |+ ++.+.+| ..-.+ .++.+....-.|+|+||-
T Consensus 6 ~~l~e~~~~l~~~s~~~vIvVEGk~D~~~L~~~----g~~~iI~t~G-tal~~---~i~~l~~~~~~VIIltD~ 71 (118)
T 1t6t_1 6 RNLSEWIKELKKASREAVILVEGKNDKKALSKF----SIKNVIDLSG-KRYAD---VVDMLEGKWEKVILLFDL 71 (118)
T ss_dssp CSHHHHHHHHHHHTTTSEEEESSHHHHHHHHTT----TCCCEEECTT-SCHHH---HHHHHTTTCSEEEECCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChHHHHHHHHh----CcCcEEEECC-CcHHH---HHHHHHhCCCEEEEEECC
Confidence 446667777776644678999999999888664 33 4444444 45443 444555554449999994
No 459
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=20.65 E-value=13 Score=26.36 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=8.6
Q ss_pred CCCCCCCCCcccc
Q psy7790 1 SSNESDDEHYVPY 13 (367)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (367)
|+.+|+||||.++
T Consensus 2 ~~~~~~~e~~~~~ 14 (88)
T 1ug0_A 2 SSGSSGEEDYEQW 14 (88)
T ss_dssp CCCCCCSTHHHHH
T ss_pred CCccccccccccc
Confidence 4566677787754
No 460
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=20.62 E-value=70 Score=24.75 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=23.1
Q ss_pred CCCeEEeec-cHHHHHHHHHHH--------HhCCC-eEEEEecCCC
Q psy7790 281 EPPVLIFAE-KKQDVDAIHEYL--------LLKGV-EAVAIHGGKD 316 (367)
Q Consensus 281 ~~~~iVF~~-s~~~~~~l~~~L--------~~~~~-~~~~lhg~~~ 316 (367)
..+++|||. +-......+..| +..|+ ++..+.||+.
T Consensus 85 ~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 85 KDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp CCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 346899998 543333333333 34688 7889999975
No 461
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=20.58 E-value=22 Score=31.13 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=13.6
Q ss_pred cccccccccccCCccc
Q psy7790 108 TKALMGVAELAKGIQY 123 (367)
Q Consensus 108 g~d~~~~a~TgsGKT~ 123 (367)
+..++..+++|+|||.
T Consensus 67 ~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTT 82 (309)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3468999999999993
No 462
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=20.58 E-value=2.9e+02 Score=23.90 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc----cc
Q psy7790 267 EAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV----AS 342 (367)
Q Consensus 267 ~~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~----~~ 342 (367)
.+++..|.+.|...+.+++++..+..+.+.......... .+ .+.|.++-.+-..++. ..+++|+.|. ++
T Consensus 196 ~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~-~~-~l~g~~sl~el~ali~-----~a~l~I~~DSG~~HlA 268 (326)
T 2gt1_A 196 EEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFA-YV-EVLPKMSLEGVARVLA-----GAKFVVSVDTGLSHLT 268 (326)
T ss_dssp HHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCT-TE-EECCCCCHHHHHHHHH-----TCSEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCC-cc-cccCCCCHHHHHHHHH-----hCCEEEecCCcHHHHH
Confidence 467777888776554444444455555444333332222 23 5678888777666653 5789999983 22
Q ss_pred ccCCcCCCCEEEEcCCCCCccccC
Q psy7790 343 KGLDFEEIKHVINTEAKIKKREHG 366 (367)
Q Consensus 343 rGlDi~~v~~VI~yd~P~~~~~Y~ 366 (367)
-.++ +..|..|+ |.++..||
T Consensus 269 aa~g---~P~v~lfg-~t~p~~~~ 288 (326)
T 2gt1_A 269 AALD---RPNITVYG-PTDPGLIG 288 (326)
T ss_dssp HHTT---CCEEEEES-SSCHHHHC
T ss_pred HHcC---CCEEEEEC-CCChhhcC
Confidence 3344 44667776 45554443
No 463
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=20.51 E-value=1.5e+02 Score=24.29 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q psy7790 268 AKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320 (367)
Q Consensus 268 ~k~~~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 320 (367)
+....|...+...-.++-||+|. +.+.+.+.+...++.+.-+||..+++.-
T Consensus 40 ~~a~~i~~~~~~~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~~ 90 (203)
T 1v5x_A 40 EAARAIGEALGPFVVRVGVFRDQ--PPEEVLRLMEEARLQVAQLHGEEPPEWA 90 (203)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSC--CHHHHHHHHHHTTCSEEEECSCCCHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHHH
Confidence 34444555444334468999975 3556666666679999999999887543
No 464
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.46 E-value=4.3e+02 Score=23.06 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=55.6
Q ss_pred EEEechhhHHHHHHHHHhhcCCCeEEeec------------------------cHHHHHHHHHHHHhCCCe----EEEEe
Q psy7790 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAE------------------------KKQDVDAIHEYLLLKGVE----AVAIH 312 (367)
Q Consensus 261 ~~~~~~~~k~~~l~~~l~~~~~~~iVF~~------------------------s~~~~~~l~~~L~~~~~~----~~~lh 312 (367)
++.++...-.....+.|...+.+-|.|+. ......-....|...|+. .....
T Consensus 168 ~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 247 (366)
T 3h5t_A 168 FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMEC 247 (366)
T ss_dssp EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEE
T ss_pred EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEc
Confidence 34455555555566666666665444443 134555566667777765 23345
Q ss_pred cCCCHHHHHHHHHHHhc--CCCcEEEecc-c---------ccccCCcC-CCCEEEEcCC
Q psy7790 313 GGKDQEERTRSVESFRK--GQKDVMVATD-V---------ASKGLDFE-EIKHVINTEA 358 (367)
Q Consensus 313 g~~~~~~R~~~~~~F~~--g~~~vLVaTd-~---------~~rGlDi~-~v~~VI~yd~ 358 (367)
+..+.+.-...++.+.. .....++|++ . -.+|+.+| +|.+|=.-|.
T Consensus 248 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~~ 306 (366)
T 3h5t_A 248 WINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGT 306 (366)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCC
Confidence 66666665555655533 3567777765 2 34899988 4544433333
No 465
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=20.38 E-value=3.3e+02 Score=23.32 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCCHHHHHHHHHHHhcCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKDQEERTRSVESFRKGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~vLVaTd 339 (367)
.|...|+..+-..||+| .|.-+|...+..+...|+.+..+ +++.+......+++.+...-. .+++|+
T Consensus 135 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~as~~~~~h~~al~~m~~~~~-~v~~t~ 206 (287)
T 2fq1_A 135 PLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSG-RVVMTE 206 (287)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHHHHTC-EEECHH
T ss_pred cHHHHHHHCCCCEEEEEEeCcchHHHHHHHHHHHCCCEEEEechhccCCCHHHHHHHHHHHHHhCc-EEeeHH
Confidence 36677777777888888 66678888888888999998887 678898888888888865433 345554
No 466
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=20.30 E-value=3.6e+02 Score=22.15 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCCeEEeeccHHHHHHHHHHHHhCCCeEEEEecCCCHHHH-HHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER-TRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++...+....+.+...|...+..+..+..+++..+. ...++... -|.+++||..-
T Consensus 22 aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~nA 92 (247)
T 2jah_A 22 ATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNA 92 (247)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3445555556677787777777888888887777788888898875433 33333322 27899998764
No 467
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=20.27 E-value=22 Score=30.41 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=10.6
Q ss_pred ccccccccCCcc
Q psy7790 111 LMGVAELAKGIQ 122 (367)
Q Consensus 111 ~~~~a~TgsGKT 122 (367)
++..+++|||||
T Consensus 4 i~I~G~~GSGKS 15 (253)
T 2ze6_A 4 HLIYGPTCSGKT 15 (253)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCcCHH
Confidence 567899999999
No 468
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=20.26 E-value=87 Score=24.59 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHh-CCCeEEEEecCCCHHHHHHHHHHHhcCCCcEEEeccc
Q psy7790 299 EYLLL-KGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340 (367)
Q Consensus 299 ~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaTd~ 340 (367)
.+|+. .|++|..+..+ +..-|..+....++|+++.+|-|.-
T Consensus 50 ~~L~e~~Gl~v~~v~k~-~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 50 NLISRATGMNVNAMLSG-PMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HHHHHHHCCCCEEECCG-GGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHhCceeEEEEec-CCCCCchHHHHHHCCCccEEEEcCC
Confidence 44555 69998888643 1114678999999999999988864
No 469
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=20.15 E-value=3.8e+02 Score=22.35 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCCeEEeec-cHHHHHHHHHHHHhCCCeEEEEecCCCHHH-HHHHHHHHh--cCCCcEEEecc
Q psy7790 272 YLLECLQKTEPPVLIFAE-KKQDVDAIHEYLLLKGVEAVAIHGGKDQEE-RTRSVESFR--KGQKDVMVATD 339 (367)
Q Consensus 272 ~l~~~l~~~~~~~iVF~~-s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~-R~~~~~~F~--~g~~~vLVaTd 339 (367)
.+.+.|...+.++++.+. .....+.+...+...+..+..+..+++..+ -...++.+. .|.+++||..-
T Consensus 44 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~nA 115 (271)
T 4iin_A 44 EIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNA 115 (271)
T ss_dssp HHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 345555556667777766 566677888888888888999999986543 333444332 26888888765
No 470
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=20.02 E-value=2.2e+02 Score=23.75 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=47.3
Q ss_pred HHHHHhhcCCCeEEee--ccHHHHHHHHHHHHhCCCeEEEE---ecCCC-HHHHHHHHHHHhcCCCcEEEec
Q psy7790 273 LLECLQKTEPPVLIFA--EKKQDVDAIHEYLLLKGVEAVAI---HGGKD-QEERTRSVESFRKGQKDVMVAT 338 (367)
Q Consensus 273 l~~~l~~~~~~~iVF~--~s~~~~~~l~~~L~~~~~~~~~l---hg~~~-~~~R~~~~~~F~~g~~~vLVaT 338 (367)
|..+|+..+-..||+| .|.-++...+..+...|+++..+ .++.+ +.....+++.++..-. .+++|
T Consensus 158 L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~as~~~~~~~~~aL~~m~~~g~-~v~tt 228 (235)
T 2wt9_A 158 LTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQTMQQQGV-VRIQS 228 (235)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECCCSTTHHHHHHHHHHHTTC-EEECH
T ss_pred HHHHHHHCCCCEEEEEEeCccHHHHHHHHHHHhCCCEEEEechhccCCChhHHHHHHHHHHHHcCC-EEEEH
Confidence 5666777777778887 66678888888888899998887 45667 7777888888876333 33444
Done!