Your job contains 1 sequence.
>psy7790
SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE
SKVWGRMSNISLLDQHSELKKMAEAKKESAKEKQLKEEEKILRSVAETKALMGVAELAKG
IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRA
LEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKP
ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEY
LLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKI
KKREHGV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7790
(367 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 537 1.1e-72 2
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 650 6.8e-67 2
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros... 661 6.7e-65 1
ZFIN|ZDB-GENE-030131-1927 - symbol:ddx41 "DEAD (Asp-Glu-A... 654 3.7e-64 1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 650 9.7e-64 1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 650 9.7e-64 1
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 650 9.7e-64 1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 650 9.7e-64 1
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 650 9.7e-64 1
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 650 9.7e-64 1
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 650 9.7e-64 1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 646 2.6e-63 1
TAIR|locus:2176192 - symbol:AT5G51280 species:3702 "Arabi... 595 2.9e-62 2
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi... 577 2.3e-60 2
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 549 4.2e-57 2
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 270 5.6e-33 3
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 265 5.0e-31 2
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 265 5.0e-31 2
POMBASE|SPCC63.11 - symbol:prp28 "U5 snRNP-associated pro... 267 1.8e-30 3
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 290 3.8e-30 2
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 264 1.9e-29 2
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 288 8.2e-29 2
UNIPROTKB|D6RGI7 - symbol:DDX41 "Probable ATP-dependent R... 319 1.2e-28 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 262 1.5e-28 2
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 280 2.0e-27 2
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 254 3.4e-27 2
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 275 4.2e-27 2
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 275 4.2e-27 2
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 273 1.2e-26 2
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 245 1.4e-26 3
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 252 1.5e-26 2
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 260 1.7e-26 2
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 256 3.2e-26 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 245 3.8e-26 2
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 284 5.9e-26 2
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 253 1.1e-25 2
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 277 1.4e-25 2
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 280 1.6e-25 2
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 238 2.6e-25 2
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 269 3.0e-25 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 269 3.0e-25 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 269 3.0e-25 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 269 3.0e-25 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 243 5.0e-25 2
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 252 1.0e-24 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 245 1.7e-24 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 245 2.0e-24 2
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 265 2.0e-24 2
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 243 2.1e-24 2
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 265 2.7e-24 2
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 235 3.9e-24 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 250 4.1e-24 2
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 235 4.3e-24 2
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 251 4.5e-24 3
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 251 4.5e-24 3
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 262 6.0e-24 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 238 6.0e-24 2
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 238 6.0e-24 2
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 238 6.0e-24 2
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 238 6.0e-24 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 237 8.4e-24 2
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 238 9.2e-24 2
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 238 9.3e-24 2
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 238 9.5e-24 2
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 238 9.5e-24 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 224 1.3e-23 2
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 270 1.7e-23 2
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 235 1.8e-23 2
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 275 3.0e-23 1
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 255 4.7e-23 2
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 237 4.9e-23 2
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 273 6.9e-23 1
GENEDB_PFALCIPARUM|PFE0430w - symbol:PFE0430w "ATP-depend... 230 7.5e-23 3
UNIPROTKB|Q8I416 - symbol:PFE0430w "ATP-dependent RNA Hel... 230 7.5e-23 3
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 273 7.6e-23 1
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 273 7.6e-23 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 273 7.6e-23 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 273 7.6e-23 1
WB|WBGene00008119 - symbol:C46F11.4 species:6239 "Caenorh... 232 7.6e-23 3
GENEDB_PFALCIPARUM|PF08_0096 - symbol:PF08_0096 "RNA heli... 265 7.7e-23 2
UNIPROTKB|Q8IAU1 - symbol:PF08_0096 "RNA helicase, putati... 265 7.7e-23 2
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 273 7.7e-23 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 273 8.7e-23 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 250 9.5e-23 2
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 272 9.7e-23 1
UNIPROTKB|B4E132 - symbol:DDX3Y "Uncharacterized protein"... 263 1.5e-22 1
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 270 1.6e-22 1
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 270 1.6e-22 1
DICTYBASE|DDB_G0274325 - symbol:ddx52 "DEAD/DEAH box heli... 208 1.9e-22 3
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 232 2.1e-22 2
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 268 2.5e-22 1
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 268 2.6e-22 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 227 2.9e-22 2
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 229 7.8e-22 2
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 229 7.9e-22 2
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 229 8.0e-22 2
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 229 8.1e-22 2
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 263 9.0e-22 1
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 263 9.1e-22 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 258 9.8e-22 1
WARNING: Descriptions of 622 database sequences were not reported due to the
limiting value of parameter V = 100.
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 537 (194.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 104/153 (67%), Positives = 130/153 (84%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
+++++IF FF+ QRQTLLFSATMP+KIQ FA+SALVKPI +NVGRAG S+NV+QE+E
Sbjct: 365 DEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAA--SLNVLQELE 422
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+V+ E K+V +LECLQKT P VLIFAEKK DVD I+EYLL+KGVE +IHGGKDQ +R
Sbjct: 423 FVRSENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHA 482
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FRK +KDV+VATDVASKGLDF+ I+HVIN
Sbjct: 483 GIEAFRKNEKDVLVATDVASKGLDFQGIEHVIN 515
Score = 216 (81.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 67/230 (29%), Positives = 109/230 (47%)
Query: 1 SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQ---ERHEEKKKLVLSDDEDNNKDSTDEE 57
SS + D + +++ +RK++K+ + L Q +K+++ + K D++
Sbjct: 34 SSGDDDQDVDDMFLTALQRKREKVHRRALLKQVLAPTMNQKEEI----ERKRKKKEEDKQ 89
Query: 58 NDESKVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAEL 117
++E++ +LL++H+ V L+ VAEL
Sbjct: 90 SEEARK-------TLLEKHAEIMETQGVIDESERQLMEEEELLD--KVTRGGGLLAVAEL 140
Query: 118 AKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESL 177
KG +Y +PI T+WR P I + ++I R+ L I EGD +PP SF MK P+SL
Sbjct: 141 TKGEKYEEPIVTAWRPPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSL 200
Query: 178 VRALEA-KGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATM 225
+ ++ KGI PT IQ+QGIP ALS D+ I S G+ T + M
Sbjct: 201 LEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 650 (233.9 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 128/152 (84%), Positives = 143/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKPITINVGRAG S++VVQEVEY
Sbjct: 353 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAA--SLDVVQEVEY 410
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 411 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 470
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 471 IEAFRDGKKDVLVATDVASKGLDFPAIQHVIN 502
Score = 417 (151.9 bits), Expect = 5.9e-39, P = 5.9e-39
Identities = 113/284 (39%), Positives = 159/284 (55%)
Query: 6 DDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEN-DESKV- 63
DDE YVPYV VK+RK+Q ++Q +L Q R + V+S++E +DS E+ DE +
Sbjct: 25 DDEDYVPYVPVKQRKQQ-MLQ--KLLQMRRK-----VVSEEEQ--RDSGGEQRGDEDDIP 74
Query: 64 WGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGIQY 123
G SNISLLDQH SVAE +ALM V E+AKGI Y
Sbjct: 75 LGPQSNISLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITY 134
Query: 124 NDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 183
+DPIKTSWRAPR IL++ + H+ +R+ ILVEG+ +PP SF+ MK P +++R L+
Sbjct: 135 DDPIKTSWRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKFPAAILRGLKK 194
Query: 184 KGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242
KGI++PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P +
Sbjct: 195 KGIQQPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-PFS 249
Query: 243 INVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTE-PPV 284
G G I+ PS + ++ + I Y LQ+ PP+
Sbjct: 250 KREGPYGLIICPSRELARQTHGI-----IEYYCRLLQEDSLPPL 288
Score = 48 (22.0 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 140 LPDQVHDIIRRNLRILVEGDDVPPACCS 167
L Q H II R+L E D +PP C+
Sbjct: 265 LARQTHGIIEYYCRLLQE-DSLPPLRCA 291
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 130/159 (81%), Positives = 144/159 (90%)
Query: 197 IPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN 256
I EDVRTIFSFF+GQRQTLLFSATMPKKIQNFARSALVKP+TINVGRAG SMN
Sbjct: 346 IDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAA--SMN 403
Query: 257 VVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
V Q+VEYVKQEAK+VYLL+CLQKT PPVLIFAEKKQDVD IHEYLLLKGVEAVAIHGGKD
Sbjct: 404 VTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKD 463
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
QEER+R+V+++R G+KDV+VATDVASKGLDF ++HVIN
Sbjct: 464 QEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVIN 502
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 115/282 (40%), Positives = 154/282 (54%)
Query: 1 SSNESD--DEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEN 58
SS E D +E YVPYV VKERKKQ +I+LGR+ Q E + S E+ N+D + +
Sbjct: 13 SSEEGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSETAQPK--SSSENENEDDSQGAH 70
Query: 59 DESKVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELA 118
D + WGR NISLLDQH+ S+A+ KALMGVAELA
Sbjct: 71 DV-ETWGRKYNISLLDQHTELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVAELA 129
Query: 119 KGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 178
KGIQY PIKT+W+ PR I + ++ + +R LRILVEG+ P SFR MK P+ ++
Sbjct: 130 KGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGIL 189
Query: 179 RALEAKGIKKPTPIQVQGIPAALSEDVRTIFSF-FRGQRQTLLFSATMPKKIQNFA-RSA 236
L AKGIK PTPIQVQG+P L+ R + F G +TL+F +P + FA
Sbjct: 190 NGLAAKGIKNPTPIQVQGLPTVLAG--RDLIGIAFTGSGKTLVF--VLP--VIMFALEQE 243
Query: 237 LVKPITINVGRAGKIM-PSMNVVQEV-EYVKQEAKIVYLLEC 276
P N G G I+ PS + ++ E ++ +K +L C
Sbjct: 244 YSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSK--HLQAC 283
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 127/159 (79%), Positives = 146/159 (91%)
Query: 197 IPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN 256
I ED+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKPITINVGRAG S++
Sbjct: 201 IDMGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAA--SLD 258
Query: 257 VVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
V+QEVEYVK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKD
Sbjct: 259 VIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD 318
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
QEERT+++E+F++G+KDV+VATDVASKGLDF I+HV+N
Sbjct: 319 QEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVN 357
Score = 220 (82.5 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 57/137 (41%), Positives = 79/137 (57%)
Query: 130 SWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKP 189
SW APR ILS+P H+ +R+ ILVEG+ +P SFR MK P+++++ L+ KGI P
Sbjct: 1 SWNAPRYILSMPAVRHERVRKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHP 60
Query: 190 TPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK-PITINVGR 247
TPIQ+QGIP LS D+ I F G +TL+F T+P I F + P G
Sbjct: 61 TPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLP--IIMFCLEQEKRLPFCKREGP 114
Query: 248 AGKIM-PSMNVVQEVEY 263
G I+ PS+NV + +
Sbjct: 115 YGLIICPSVNVAKHTHH 131
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 414
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 415 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 506
Score = 406 (148.0 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 105/284 (36%), Positives = 153/284 (53%)
Query: 4 ESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKV 63
+ DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 27 DEDDEDYVPYVPLRQRR-QLLLQ--KLLQRR---RKGAAEEEQQDSGSEPRGDEDDIPL- 79
Query: 64 WGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGIQY 123
G SN+SLLDQH SVAE +ALM V E+AKGI Y
Sbjct: 80 -GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITY 138
Query: 124 NDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 183
+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MKLP +++R L+
Sbjct: 139 DDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKK 198
Query: 184 KGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242
KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P +
Sbjct: 199 KGILHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-PFS 253
Query: 243 INVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 254 KREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 292
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 414
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 415 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 506
Score = 405 (147.6 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 104/286 (36%), Positives = 153/286 (53%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
+ + DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 25 TEDEDDEEYVPYVPLRQRR-QLLLQ--KLLQRR---RKGAAEEEQQDSGSEPRGDEDDIP 78
Query: 62 KVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGI 121
G SN+SLLDQH SVAE +ALM V E+AKGI
Sbjct: 79 L--GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGI 136
Query: 122 QYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 181
Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK P +++R L
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGL 196
Query: 182 EAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKP 240
+ KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P
Sbjct: 197 KKKGIHHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-P 251
Query: 241 ITINVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
+ G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 252 FSKREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 292
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 384 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 441
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 442 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 501
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 502 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 533
Score = 405 (147.6 bits), Expect = 2.7e-37, P = 2.7e-37
Identities = 104/286 (36%), Positives = 153/286 (53%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
+ + DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 52 TEDEDDEEYVPYVPLRQRR-QLLLQ--KLLQRR---RKGAAEEEQQDSGSEPRGDEDDIP 105
Query: 62 KVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGI 121
G SN+SLLDQH SVAE +ALM V E+AKGI
Sbjct: 106 L--GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGI 163
Query: 122 QYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 181
Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK P +++R L
Sbjct: 164 TYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGL 223
Query: 182 EAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKP 240
+ KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P
Sbjct: 224 KKKGIHHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-P 278
Query: 241 ITINVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
+ G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 279 FSKREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 319
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 414
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 415 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 506
Score = 404 (147.3 bits), Expect = 2.5e-37, P = 2.5e-37
Identities = 104/286 (36%), Positives = 153/286 (53%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
+ + DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 25 AEDEDDEDYVPYVPLRQRR-QLLLQ--KLLQRR---RKGAAEEEQQDSGSEPRGDEDDIP 78
Query: 62 KVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGI 121
G SN+SLLDQH SVAE +ALM V E+AKGI
Sbjct: 79 L--GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGI 136
Query: 122 QYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 181
Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK P +++R L
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGL 196
Query: 182 EAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKP 240
+ KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P
Sbjct: 197 KKKGIHHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-P 251
Query: 241 ITINVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
+ G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 252 FSKREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 292
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 375 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 432
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 433 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 492
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 493 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 524
Score = 404 (147.3 bits), Expect = 3.1e-37, P = 3.1e-37
Identities = 104/286 (36%), Positives = 153/286 (53%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
+ + DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 43 AEDEDDEDYVPYVPLRQRR-QLLLQ--KLLQRR---RKGAAEEEQQDSGSEPRGDEDDIP 96
Query: 62 KVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGI 121
G SN+SLLDQH SVAE +ALM V E+AKGI
Sbjct: 97 L--GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGI 154
Query: 122 QYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 181
Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK P +++R L
Sbjct: 155 TYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGL 214
Query: 182 EAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKP 240
+ KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P
Sbjct: 215 KKKGIHHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-P 269
Query: 241 ITINVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
+ G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 270 FSKREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 310
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 414
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 415 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 506
Score = 404 (147.3 bits), Expect = 2.5e-37, P = 2.5e-37
Identities = 104/286 (36%), Positives = 153/286 (53%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
+ + DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 25 AEDEDDEDYVPYVPLRQRR-QLLLQ--KLLQRR---RKGAAEEEQQDSGSEPRGDEDDIP 78
Query: 62 KVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGI 121
G SN+SLLDQH SVAE +ALM V E+AKGI
Sbjct: 79 L--GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGI 136
Query: 122 QYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 181
Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK P +++R L
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGL 196
Query: 182 EAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKP 240
+ KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P
Sbjct: 197 KKKGIHHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-P 251
Query: 241 ITINVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
+ G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 252 FSKREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 292
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 357 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 414
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 415 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 506
Score = 402 (146.6 bits), Expect = 4.3e-37, P = 4.3e-37
Identities = 104/284 (36%), Positives = 152/284 (53%)
Query: 4 ESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKV 63
+ DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 27 DEDDEDYVPYVPLRQRR-QLLLQ--KLLQRR---RKGATEEEQQDSGSEPRGDEDDIPL- 79
Query: 64 WGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGIQY 123
G SN+SLLDQH SVAE +ALM V E+AKGI Y
Sbjct: 80 -GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITY 138
Query: 124 NDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 183
+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK P +++R L+
Sbjct: 139 DDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKK 198
Query: 184 KGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPIT 242
KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + + P +
Sbjct: 199 KGILHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL-PFS 253
Query: 243 INVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 254 KREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 292
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 125/152 (82%), Positives = 144/152 (94%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+RTIFS+F+GQRQTLLFSATMPKKIQNFA+SALVKP+TINVGRAG S++V+QEVEY
Sbjct: 356 DIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAA--SLDVIQEVEY 413
Query: 264 VKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
VK+EAK+VYLLECLQKT PPVLIFA+KK DVDAIHEYLLLKGVEAVAIHGGKDQEERT++
Sbjct: 414 VKEEAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 473
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+FR+G+KDV+VATDVASKGLDF I+HVIN
Sbjct: 474 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN 505
Score = 415 (151.1 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 105/287 (36%), Positives = 156/287 (54%)
Query: 1 SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE 60
S +E +DE YVPYV +++R+ Q L+Q +L Q+R +K + +D+ S +++
Sbjct: 21 SHSEDEDEDYVPYVPLRQRR-QLLLQ--KLLQQR---RKGAAEEEQQDSGSGSEPRGDED 74
Query: 61 SKVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKG 120
+ G SN+SLLDQH SVAE +ALM V E+AKG
Sbjct: 75 NITLGPQSNVSLLDQHQRLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKG 134
Query: 121 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRA 180
I Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MKLP +++R
Sbjct: 135 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRG 194
Query: 181 LEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK 239
L+ KGI PTPIQ+QGIP LS D+ I F G +TL+F T+P + + +
Sbjct: 195 LKKKGILHPTPIQIQGIPTILSGRDMIGIA--FTGSGKTLVF--TLPVIMFCLEQEKRL- 249
Query: 240 PITINVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVL 285
P + G G I+ PS + ++ + + Y LQ+ P+L
Sbjct: 250 PFSKREGPYGLIICPSRELARQTHGILE-----YYCRLLQEDSSPLL 291
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 595 (214.5 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 118/173 (68%), Positives = 141/173 (81%)
Query: 197 IPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN 256
+ +D+R +F F+ QRQTLLFSATMP KIQ FARSALVKP+T+NVGRAG +++
Sbjct: 315 VDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAA--NLD 372
Query: 257 VVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
V+QEVEYVKQEAKIVYLLECLQKT PPVLIF E K DVD IHEYLLLKGVEAVAIHGGKD
Sbjct: 373 VIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKD 432
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE--AKIKKREHGV 367
QE+R ++ SF+ G+KDV+VATDVASKGLDF +I+HVIN + A+I+ H +
Sbjct: 433 QEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI 485
Score = 264 (98.0 bits), Expect = 8.1e-26, Sum P(2) = 8.1e-26
Identities = 63/165 (38%), Positives = 94/165 (56%)
Query: 105 VAETKALMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPA 164
+++ K LM V ELAKGI Y +P+ T W+ P I + + D+IR+ I+V GDD+PP
Sbjct: 85 LSDKKTLMSVRELAKGITYTEPLLTGWKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPP 144
Query: 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSA 223
+F+ MK P ++ L+ KGI +PTPIQVQG+P L+ D+ I F G +TL+F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIA--FTGSGKTLVFVL 202
Query: 224 TMPKKIQNFARSALVKPITINVGRAGKIM-PSMNVVQEV-EYVKQ 266
M I + ++ PI G G I+ PS + ++ E V+Q
Sbjct: 203 PM---IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQ 244
Score = 59 (25.8 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 8 EHYVPYVSVKERKK---QKLIQLGRLAQERHEEKKKLVLSD 45
+ Y+ YVSV ER+ QK++Q A E EE K L++
Sbjct: 9 DSYIEYVSVAERRAIAAQKILQRKGKASELEEEADKEKLAE 49
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 577 (208.2 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 113/159 (71%), Positives = 132/159 (83%)
Query: 197 IPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN 256
+ +D+R +F F+ QRQTLLFSATMP KIQ FA SALVKP+T+NVGRAG +++
Sbjct: 266 VDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAA--NLD 323
Query: 257 VVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
V+QEVEYVKQEAKIVYLLECLQKT PPVLIF E K DVD IHEYLLLKGVEAVAIHGGKD
Sbjct: 324 VIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKD 383
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
QE+R ++ F+ G+KDV+VATDVASKGLDF +I+HVIN
Sbjct: 384 QEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVIN 422
Score = 249 (92.7 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 80/260 (30%), Positives = 128/260 (49%)
Query: 105 VAETKALMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPA 164
+++ K LM V ELA+GI Y +P+ T W+ P + + + D+IR+ I V G+D+PP
Sbjct: 36 LSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPP 95
Query: 165 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSA 223
+F MK P L+R L+ KGI PTPIQVQG+P LS D+ I F G +TL+F
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIA--FTGSGKTLVF-- 151
Query: 224 TMPKKIQNFARSALVKPITINVGRAGKIM-PSMNVVQEVEYVKQEAKIVYLLECLQKTEP 282
+P I + ++ PI G ++ PS + ++ Y E + L+E
Sbjct: 152 VLPMIILAL-QEEIMMPIAAGEGPIALVICPSRELAKQT-YDVVEQFVASLVEDGYPRLR 209
Query: 283 PVLIFA--EKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV--MVAT 338
+L + + +D + KGV V G R + + + +K D ++
Sbjct: 210 SLLCIGGVDMRSQLDVVK-----KGVHIVVATPG-----RLKDILAKKKMSLDACRLLTL 259
Query: 339 DVASKGLD--FEE-IKHVIN 355
D A + +D FE+ I+HV +
Sbjct: 260 DEADRLVDLGFEDDIRHVFD 279
Score = 59 (25.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 7 DEHYVPYVSVKER---KKQKLIQL-GRLAQERHEEKKKLV 42
D+ YV YV V+ER K+K+++ G+ E +KKKL+
Sbjct: 4 DDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLM 43
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 549 (198.3 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 109/159 (68%), Positives = 130/159 (81%)
Query: 197 IPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN 256
I +D+R++ F QRQTLLFSATMPKKIQ FARSALV P+ +NVGRAG ++N
Sbjct: 392 IDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAA--NLN 449
Query: 257 VVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
V QEVE+VK EAKIVYLLECLQKT PPVLIF E K+DVD I+EYLLLK VEAV+IHG K
Sbjct: 450 VTQEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKS 509
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q+ER ++++FR+G+KDV+VATDVASKGLDF EI+HVIN
Sbjct: 510 QDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVIN 548
Score = 262 (97.3 bits), Expect = 4.9e-25, Sum P(2) = 4.9e-25
Identities = 64/161 (39%), Positives = 95/161 (59%)
Query: 103 RSVAETKALMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVP 162
+S+ K L+ V + AK + Y D IKT+WRAPR IL ++ H +R L I+ +G+D+P
Sbjct: 159 KSLKTFKPLVSVKDRAKDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIP 218
Query: 163 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLF 221
P +F+ MK+P+ ++ L KGIKKP+PIQVQG+P LS D+ I + G +TL+F
Sbjct: 219 PPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIA--YTGSGKTLVF 276
Query: 222 SATMPKKIQNFARSALVK-PITINVGRAGKIM-PSMNVVQE 260
T+P + FA K PI G G I+ PS + ++
Sbjct: 277 --TLPMVL--FALEEECKLPIIQGEGPFGLILCPSRELARQ 313
Score = 56 (24.8 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 12/54 (22%), Positives = 32/54 (59%)
Query: 3 NESDDEHYVPYVSVKERKKQKL-IQLGRLAQERHEEKKKLVLSDDEDNNKDSTD 55
++ +++H ++ +KERK ++ +L L Q++ ++ + ++E NN +T+
Sbjct: 8 HDIEEQHIEKWIPLKERKLNQIKSKLNNLKQQQPQQHSQQ--QENEQNNATATN 59
Score = 40 (19.1 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 10 YVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEN 58
+ P VSVK+R K +I + + + + +L DE +++ D+ N
Sbjct: 164 FKPLVSVKDRAKD-VIYTDSI--KTNWRAPRYILERDEKDHQKVRDQLN 209
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 270 (100.1 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 56/141 (39%), Positives = 87/141 (61%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275
RQT++F+ATMP ++ ARS L +P + +G AGK P V Q+V + + K LLE
Sbjct: 587 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVILMSEGEKRKKLLE 644
Query: 276 CLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV 334
L EPP++IF +K+ D + + L G A +HGGK QE+R ++ + + G KD+
Sbjct: 645 VLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 704
Query: 335 MVATDVASKGLDFEEIKHVIN 355
+VATDVA +G+D +++ V+N
Sbjct: 705 LVATDVAGRGIDIQDVSMVLN 725
Score = 90 (36.7 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 140 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
+ D+ I R + I +G +P +++ LP ++ +E G K PTPIQ Q IP
Sbjct: 352 MTDRDWRIFREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPI 411
Query: 200 AL-SEDVRTIFSFFRGQRQT-----LLFSATMPK 227
L + D+ + G+ L++ T+PK
Sbjct: 412 GLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPK 445
Score = 57 (25.1 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 17 KERKKQKLIQ-LGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKV 63
+ERKK+++ Q +GR E +E+++ + + + D++++ K+
Sbjct: 177 EERKKRRVFQDIGRKMLEDPQERERRERRERMERENNGNDDDDERQKI 224
Score = 43 (20.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 4 ESDDEHYVPYVSVKERKKQKLIQLGRLAQERH-----EEKKKLVLSD 45
E + E ++S ER+ + + + ++A+ER E KK+ V D
Sbjct: 141 EEEAESKPKFLSKSEREAEAIKRREQVAEERRRQLDEERKKRRVFQD 187
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 265 (98.3 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 60/155 (38%), Positives = 92/155 (59%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK-PITINVGRAGKIMPSMNVVQEVEY 263
+R I R RQTL++SAT PK++Q A+ + PI +NVG + ++ QE+
Sbjct: 281 IRKIVDQIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSL-TLTACRSIKQEIYL 339
Query: 264 VKQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ KI L LQ K +++F E K++ D I + L L G+ A+ IHG K QEER
Sbjct: 340 LEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEER 399
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +M+ATDVAS+GLD + +K+VIN
Sbjct: 400 RWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVIN 434
Score = 105 (42.0 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 143 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
+V +I ++ ++EG++VP S + P+ ++++L+ I PTPIQ+QG P ALS
Sbjct: 90 EVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALS 149
Query: 203 -EDVRTIFSFFRGQRQTLLF 221
+D+ I G +TL F
Sbjct: 150 GKDM--IGKAETGSGKTLAF 167
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 265 (98.3 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 60/155 (38%), Positives = 92/155 (59%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVK-PITINVGRAGKIMPSMNVVQEVEY 263
+R I R RQTL++SAT PK++Q A+ + PI +NVG + ++ QE+
Sbjct: 281 IRKIVDQIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSL-TLTACRSIKQEIYL 339
Query: 264 VKQEAKIVYLLECLQ---KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ KI L LQ K +++F E K++ D I + L L G+ A+ IHG K QEER
Sbjct: 340 LEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEER 399
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +M+ATDVAS+GLD + +K+VIN
Sbjct: 400 RWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVIN 434
Score = 105 (42.0 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 143 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
+V +I ++ ++EG++VP S + P+ ++++L+ I PTPIQ+QG P ALS
Sbjct: 90 EVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALS 149
Query: 203 -EDVRTIFSFFRGQRQTLLF 221
+D+ I G +TL F
Sbjct: 150 GKDM--IGKAETGSGKTLAF 167
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 267 (99.0 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 52/145 (35%), Positives = 90/145 (62%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAK----I 270
+RQT++FSAT+P ++ N A+S L++P+ + +G G+ + V Q VE + ++K +
Sbjct: 449 RRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVD--RVEQRVEMISDDSKKWRRV 506
Query: 271 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
+LE + PP++IF K++++AI + L G AV +HG K QE+R R++E R
Sbjct: 507 EEILES-NRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
D++VATD+A +G+D + V+N
Sbjct: 566 TADILVATDIAGRGIDIPNVSLVLN 590
Score = 83 (34.3 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 118 AKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESL 177
AK I ++D WR + + ++ + I++ + I ++GDD+P ++ LP +
Sbjct: 205 AKKIDWDD---VPWRE-KPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEM 260
Query: 178 VRALEAKGIKKPTPIQVQGIPAAL 201
++ L+ K+P+ IQ IP L
Sbjct: 261 LKVLKKVNYKEPSSIQRAAIPVLL 284
Score = 38 (18.4 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 17 KERKKQKLIQLGRLAQERH-------EEKKKLVLSDDEDNNKDSTDEENDES 61
K ++ KL+ L + H +++KK +S NN + DE+
Sbjct: 51 KAKQNDKLLDLRKRTFTNHLENNELADDEKKSQVSSVSSNNSGTESSATDEA 102
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 290 (107.1 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 66/154 (42%), Positives = 91/154 (59%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I R RQTLLFSATMP K++ AR L PI + VG G M + ++ Q V +
Sbjct: 396 VRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVG--MANEDITQVVNVI 453
Query: 265 KQEA-KIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+A K+ +LLE L E VL+FA KK VD I L L + A+HG KDQ R
Sbjct: 454 PSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRM 513
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+++ F+ G V++ATDVA++GLD + +K V+N
Sbjct: 514 ETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVN 547
Score = 78 (32.5 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 121 IQYNDPI-KTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 179
I Y +PI K + I + +Q R+ L I V G DV +F ++
Sbjct: 183 IDY-EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 180 ALEAKGIKKPTPIQVQGIPAALS-EDV 205
A++ + +KPT IQ Q +P LS DV
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDV 268
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 264 (98.0 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 65/155 (41%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L PI + VG ++ S N+ Q VE V
Sbjct: 281 IRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSL-ELSASHNITQIVEVV 339
Query: 265 ----KQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
K++ YL Q E LIFA K+ D I +YL G A+AIHG KDQ ER
Sbjct: 340 SDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRER 399
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ FR G+ +MVATDVA++G+D + I +VIN
Sbjct: 400 DWVLQEFRNGRSPIMVATDVAARGIDVKGINYVIN 434
Score = 92 (37.4 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 149 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
R+ + + G D+P +F P+ ++ ++A+G KPT IQ QG P ALS
Sbjct: 96 RKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALS 149
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 288 (106.4 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 66/144 (45%), Positives = 88/144 (61%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274
+RQTL+FSAT P+ IQ AR L + ++VGR G S N+ Q+V +V+ K YLL
Sbjct: 364 ERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGST--SENITQKVVHVEDSEKRSYLL 421
Query: 275 ECLQKTEPP---VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+ L T PP LIF E K+ D + +YLL A +IHG + Q ER R++E FR G+
Sbjct: 422 DILH-TLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGR 480
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
+MVAT VAS+GLD + HVIN
Sbjct: 481 TSIMVATAVASRGLDIPNVTHVIN 504
Score = 64 (27.6 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 151 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIF 209
++ + V G D+ P F L L++ ++ G +PTP+Q IP S D+
Sbjct: 155 DIPVEVSGGDIEPVN-EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACA 213
Query: 210 SFFRGQRQTLLF 221
G+ LF
Sbjct: 214 QTGSGKTAGFLF 225
>UNIPROTKB|D6RGI7 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634 HGNC:HGNC:18674
ChiTaRS:DDX41 EMBL:AC145098 IPI:IPI00965661
ProteinModelPortal:D6RGI7 SMR:D6RGI7 PRIDE:D6RGI7
Ensembl:ENST00000509576 HOGENOM:HOG000205106 ArrayExpress:D6RGI7
Bgee:D6RGI7 Uniprot:D6RGI7
Length = 201
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 72/185 (38%), Positives = 103/185 (55%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
+ + DDE YVPYV +++R+ Q L+Q +L Q R +K + +D+ + +E+D
Sbjct: 25 AEDEDDEDYVPYVPLRQRR-QLLLQ--KLLQRR---RKGAAEEEQQDSGSEPRGDEDDIP 78
Query: 62 KVWGRMSNISLLDQHSXXXXXXXXXXXXXXXXXXXXXXXXXRSVAETKALMGVAELAKGI 121
G SN+SLLDQH SVAE +ALM V E+AKGI
Sbjct: 79 L--GPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGI 136
Query: 122 QYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 181
Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK P +V L
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAGVVPVL 196
Query: 182 EAKGI 186
+A G+
Sbjct: 197 QALGL 201
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 262 (97.3 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 59/153 (38%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I S R RQTL+FSAT PK++Q A L I +++G +I + NV Q VE
Sbjct: 552 IRKIISQIRPDRQTLMFSATWPKEVQALAHDFLTDHIQVHIGST-EITANHNVRQIVEVC 610
Query: 265 KQEAKIVYLLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+ K +L L + V++FAE ++ VD + L G +++ IHG K Q ER
Sbjct: 611 QDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDF 670
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G +M+ATDVAS+GLD ++IK+V+N
Sbjct: 671 VLSQFKNGMVPIMIATDVASRGLDIKDIKYVVN 703
Score = 92 (37.4 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 149 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTI 208
R + ++ V+G +VPP F P L++ + G PTPIQ Q P AL R I
Sbjct: 367 RASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKG--RDI 424
Query: 209 FSFFR-GQRQTLLF 221
+ G +TL F
Sbjct: 425 IGLAKTGSGKTLAF 438
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 280 (103.6 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 62/143 (43%), Positives = 89/143 (62%)
Query: 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
G+RQTL+FSAT P IQ+ AR L I ++VGR G S N+ Q+V YV+ + K L
Sbjct: 333 GERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGST--SENITQKVLYVENQDKKSAL 390
Query: 274 LECLQ-KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
L+ L T+ LIF E K+ D + ++L+++ A AIHG + Q ER R++ +FR G
Sbjct: 391 LDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 450
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
++VAT VA++GLD + HVIN
Sbjct: 451 TLLVATAVAARGLDIPNVTHVIN 473
Score = 58 (25.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 18/65 (27%), Positives = 25/65 (38%)
Query: 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP-AALSEDVRTIFSFFRGQR 216
G DVP F L L+ ++ KPTP+Q +P A D+ G+
Sbjct: 134 GKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKT 193
Query: 217 QTLLF 221
LF
Sbjct: 194 GGFLF 198
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 254 (94.5 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 57/155 (36%), Positives = 90/155 (58%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQ L++SAT PK+++ A L I +N+G + + N++Q V+
Sbjct: 325 IRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLS-LSANHNILQIVDVC 383
Query: 265 KQEAKIVYLLECLQ----KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+ K++ L++ L + E +IF E K+ VD I + +G A AIHG K Q+ER
Sbjct: 384 DENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQER 443
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ SFR G+ ++VATDVA++GLD +++K VIN
Sbjct: 444 DFVLSSFRNGRHSILVATDVAARGLDVDDVKFVIN 478
Score = 88 (36.0 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 154 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
I ++GD VP F P+ ++ + +G KPT IQ QG P A+S
Sbjct: 145 ITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMS 193
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 275 (101.9 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 57/145 (39%), Positives = 90/145 (62%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEEADKRSF 428
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + +L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 429 LLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 488
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 489 KSPILVATAVAARGLDISNVKHVIN 513
Score = 62 (26.9 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
G++ PP SF +++ E ++ +E +PTP+Q IP
Sbjct: 170 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP 210
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 275 (101.9 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 57/145 (39%), Positives = 90/145 (62%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEEADKRSF 429
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + +L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 430 LLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 489
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 490 KSPILVATAVAARGLDISNVKHVIN 514
Score = 62 (26.9 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
G++ PP SF +++ E ++ +E +PTP+Q IP
Sbjct: 171 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP 211
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 273 (101.2 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 351 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEELDKRSF 408
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ DA+ ++L +G +IHG + Q +R ++ FR G
Sbjct: 409 LLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 468
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 469 KSPILVATAVAARGLDISNVKHVIN 493
Score = 59 (25.8 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
G + PP SF + + E ++ +E +PTP+Q IP
Sbjct: 150 GSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIP 190
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 245 (91.3 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 58/168 (34%), Positives = 99/168 (58%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V +I + R RQTLLFSAT ++ FAR+ L PI I++G G + ++ Q V+ +
Sbjct: 473 VLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSA--NSDITQIVQVL 530
Query: 265 KQEA-KIVYLLE--CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
K ++ K +L L ++ VLIF K V+ + L G + +HG K+Q ER+
Sbjct: 531 KSDSDKWNWLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERS 590
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN--TEAKIKKREHGV 367
+++++F++G+ ++++ATDVA++GLD IK+V+N T I+ H +
Sbjct: 591 QTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRI 638
Score = 101 (40.6 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 142 DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+QV +I R+NL I + G D+ SF + L++A+ + I+ PTPIQ Q IP AL
Sbjct: 282 EQVFEI-RKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIAL 340
Query: 202 S-EDVRTIFSFFRGQRQTLLF 221
S D+ I G+ T ++
Sbjct: 341 SGRDLIAIAKTGSGKTATFIW 361
Score = 41 (19.5 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
NE D+E + Y K R+KQ + + Q++ ++ L DD+ D +N +SK
Sbjct: 192 NEDDEEIF--Y---KLRQKQLANKSSK--QQQDDDVDYSSLDDDDGYFDDEESLKNGQSK 244
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 252 (93.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 61/157 (38%), Positives = 91/157 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV--- 261
+R I S R RQTL++SAT PK+++ A L I IN+G ++ + N+ Q V
Sbjct: 449 IRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSL-ELSANHNIRQVVDVC 507
Query: 262 -EYVKQEAKIVYLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQE 318
E+ K+E L + +E P ++IF E K+ VD + ++ GV AIHG K Q
Sbjct: 508 DEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQS 567
Query: 319 ERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
ER + FR G+ +++VATDVA++GLD + IK+VIN
Sbjct: 568 ERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 604
Score = 82 (33.9 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 149 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
R I V G VP F + LP+ +++ + +G K PT IQ QG P A+S
Sbjct: 265 REEQEITVRGQ-VPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMS 317
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 260 (96.6 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 58/151 (38%), Positives = 88/151 (58%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
RG RQTLLFSAT P++IQ A L I + VGR G +VQ VE+V K +
Sbjct: 344 RGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDL--IVQRVEFVLDSDKRSH 401
Query: 273 LLECL--------QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSV 324
L++ L Q + L+F E K+ D++ +L + G A +IHG + Q+ER ++
Sbjct: 402 LMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVAL 461
Query: 325 ESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++F+ G+ ++VATDVA++GLD + HV+N
Sbjct: 462 KAFKSGRTPILVATDVAARGLDIPHVAHVVN 492
Score = 71 (30.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 151 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
++ I GD+VPP +F + L E+L + KPTP+Q IP L
Sbjct: 144 DIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILL 194
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 256 (95.2 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 58/141 (41%), Positives = 84/141 (59%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275
RQTL+FSAT P IQ+ AR L I ++VGR G S N+ Q + YV K LL+
Sbjct: 347 RQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGST--SENITQRILYVDDMDKKSALLD 404
Query: 276 CLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV 334
L + LIF E K+ D + ++L+++ +A AIHG + Q ER R++ +F+ D+
Sbjct: 405 LLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADI 464
Query: 335 MVATDVASKGLDFEEIKHVIN 355
+VAT VA++GLD + HVIN
Sbjct: 465 LVATAVAARGLDIPNVTHVIN 485
Score = 72 (30.4 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 151 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
N+ + G DVP F L E L+ ++ KPTP+Q IP
Sbjct: 139 NIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIP 186
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 245 (91.3 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 58/153 (37%), Positives = 86/153 (56%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I S R RQTLL+SAT P++++ AR L P +G + + ++ Q +E V
Sbjct: 333 IRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTD-LKANQSINQVIEIV 391
Query: 265 KQEAKIVYLLECLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
K LL L++ +LIF E K+ D + L + G A+AIHG K Q ER R
Sbjct: 392 PTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDR 451
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +M ATDVA++GLD ++IK V+N
Sbjct: 452 VLAEFKSGRSPIMTATDVAARGLDVKDIKCVVN 484
Score = 100 (40.3 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 137 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQG 196
+ ++ +Q + R I VEG DVP F+ P++++ A+ G +PTPIQ QG
Sbjct: 136 VQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQG 195
Query: 197 IPAAL 201
P AL
Sbjct: 196 WPMAL 200
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 284 (105.0 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
Identities = 60/145 (41%), Positives = 90/145 (62%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G RQT++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 421 KGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGST--SENITQKVVWVEENDKRSF 478
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ DA+ ++L +G +IHG + Q +R ++ FR G
Sbjct: 479 LLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSG 538
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ +MVAT VA++GLD +KHVIN
Sbjct: 539 RCPIMVATAVAARGLDISNVKHVIN 563
Score = 43 (20.2 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
G + P SF + + E ++ + +PTP+Q IP
Sbjct: 215 GTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIP 255
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 253 (94.1 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 57/150 (38%), Positives = 85/150 (56%)
Query: 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
G RQT+LFSAT P++IQ A L I + VGR G +VQ VE+V K +L
Sbjct: 332 GVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDL--IVQRVEFVHDSDKRSHL 389
Query: 274 LECL--------QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVE 325
++ L Q + L+F E K+ D++ +L + G A IHG + Q+ER ++
Sbjct: 390 MDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALR 449
Query: 326 SFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
SF+ G+ ++VATDVA++GLD + HV+N
Sbjct: 450 SFKTGRTPILVATDVAARGLDIPHVAHVVN 479
Score = 71 (30.1 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 151 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
++ I GD+VPP +F + L E+L ++ KPTP+Q IP
Sbjct: 131 DIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIP 178
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 277 (102.6 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 59/145 (40%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G RQT++FSAT PK+IQ AR L I + VGR G S N+ Q+V +V++ K +
Sbjct: 405 KGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGST--SENITQKVVWVEENDKRSF 462
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ DA+ ++L +G +IHG + Q +R ++ FR G
Sbjct: 463 LLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSG 522
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 523 RCPILVATAVAARGLDISNVKHVIN 547
Score = 46 (21.3 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSE 203
G + P F +++ E ++ + +PTP+Q IP S+
Sbjct: 200 GHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSK 245
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 280 (103.6 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 64/142 (45%), Positives = 87/142 (61%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275
RQTL+FSAT P+ IQ AR L + ++VGR G S N+ Q+VEYV+ K LL+
Sbjct: 381 RQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST--SENITQKVEYVEDHDKRSVLLD 438
Query: 276 CLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333
L T LIF E K+ DA+ E+L+ + A AIHG + Q ER R++E FR G+
Sbjct: 439 ILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYP 498
Query: 334 VMVATDVASKGLDFEEIKHVIN 355
++VAT VA++GLD + HVIN
Sbjct: 499 ILVATAVAARGLDIPNVTHVIN 520
Score = 42 (19.8 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 137 ILSLPDQVHDI-IRRNLRILVEGDDVP 162
IL D++ D+ +R +VEG+D+P
Sbjct: 350 ILDEADRMLDMGFEPQIRRIVEGEDMP 376
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 238 (88.8 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 54/154 (35%), Positives = 88/154 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I S R RQTL +SAT PK+++ ++ L P + +G + + + + Q V+ +
Sbjct: 267 IRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIG-SSDLKANRAIRQIVDVI 325
Query: 265 KQEAK---IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+ K +V LLE + +L+F + K+ D I L + G A++IHG K Q ER
Sbjct: 326 SESQKYNKLVKLLEDIMDGSR-ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD 384
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +M ATDVA++GLD +++K+VIN
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVIN 418
Score = 102 (41.0 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 150 RNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
R LR I VEG D+P SFR + P+ ++ ++ G +PTPIQ QG P A+
Sbjct: 82 RKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAM 134
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 269 (99.8 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 61/179 (34%), Positives = 103/179 (57%)
Query: 182 EAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR-GQ---RQTLLFSATMPKKIQNFARSAL 237
+ + I + P+ Q +ED + + F G+ RQT++F+ATMP ++ ARS L
Sbjct: 561 DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYL 620
Query: 238 VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDA 296
+P + +G AGK P V Q+V + + K LL L++ +PP++IF +K+ D
Sbjct: 621 RRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 678
Query: 297 IHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + L G A +HGGK QE+R ++ + + G KD++VATDVA +G+D +++ V+N
Sbjct: 679 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVN 737
Score = 54 (24.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 17 KERKKQKLIQ-LGRLA----QERHEEKKKLVLSDDEDNNKDSTD-----EENDESK 62
+ERKK+K Q LGR QER +++ + + + N+D EE D+SK
Sbjct: 189 EERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKDKSK 244
Score = 43 (20.2 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ R + K + R +ER +K++ + + +KD + D +
Sbjct: 59 RSRSRSKSTERERRHKERERDKERDRSKKERERDKDGHRRDKDRKR 104
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 269 (99.8 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 61/179 (34%), Positives = 103/179 (57%)
Query: 182 EAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR-GQ---RQTLLFSATMPKKIQNFARSAL 237
+ + I + P+ Q +ED + + F G+ RQT++F+ATMP ++ ARS L
Sbjct: 562 DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYL 621
Query: 238 VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDA 296
+P + +G AGK P V Q+V + + K LL L++ +PP++IF +K+ D
Sbjct: 622 RRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 679
Query: 297 IHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + L G A +HGGK QE+R ++ + + G KD++VATDVA +G+D +++ V+N
Sbjct: 680 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVN 738
Score = 54 (24.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 17 KERKKQKLIQ-LGRLA----QERHEEKKKLVLSDDEDNNKDSTD-----EENDESK 62
+ERKK+K Q LGR QER +++ + + + N+D EE D+SK
Sbjct: 190 EERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKDKSK 245
Score = 51 (23.0 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ R + K + R +ER +K++ D D +KD + D +
Sbjct: 60 RSRSRSKSTERDRRHKERERDKERDRNKKDRDRDKDGHRRDKDRKR 105
Score = 41 (19.5 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 46 DEDNNKDSTDEENDE 60
D D+ KD DE D+
Sbjct: 121 DRDSRKDEEDEHGDK 135
Score = 37 (18.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 17 KERKKQKLIQLGR-LAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
K+RK+ + R +++ R + K D ++ D+E D +K
Sbjct: 42 KDRKRHRSRDRRRGVSRSRSRSRSKSTERDRRHKERER-DKERDRNK 87
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 269 (99.8 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 61/179 (34%), Positives = 103/179 (57%)
Query: 182 EAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR-GQ---RQTLLFSATMPKKIQNFARSAL 237
+ + I + P+ Q +ED + + F G+ RQT++F+ATMP ++ ARS L
Sbjct: 562 DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYL 621
Query: 238 VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDA 296
+P + +G AGK P V Q+V + + K LL L++ +PP++IF +K+ D
Sbjct: 622 RRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 679
Query: 297 IHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + L G A +HGGK QE+R ++ + + G KD++VATDVA +G+D +++ V+N
Sbjct: 680 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVN 738
Score = 54 (24.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 17 KERKKQKLIQ-LGRLA----QERHEEKKKLVLSDDEDNNKDSTD-----EENDESK 62
+ERKK+K Q LGR QER +++ + + + N+D EE D+SK
Sbjct: 190 EERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKDKSK 245
Score = 50 (22.7 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ R + K + R +ER +K++ D D +KD + D +
Sbjct: 60 RSRSRSKSTERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKR 105
Score = 41 (19.5 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 46 DEDNNKDSTDEENDE 60
D D+ KD DE D+
Sbjct: 121 DRDSKKDEDDEHGDK 135
Score = 37 (18.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1 SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEK 38
S + DDEH K+ K Q L LA+++ EE+
Sbjct: 124 SKKDEDDEH-----GDKKPKAQPLSLEELLAKKKAEEE 156
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 269 (99.8 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 61/179 (34%), Positives = 103/179 (57%)
Query: 182 EAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR-GQ---RQTLLFSATMPKKIQNFARSAL 237
+ + I + P+ Q +ED + + F G+ RQT++F+ATMP ++ ARS L
Sbjct: 562 DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYL 621
Query: 238 VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDA 296
+P + +G AGK P V Q+V + + K LL L++ +PP++IF +K+ D
Sbjct: 622 RRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDV 679
Query: 297 IHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + L G A +HGGK QE+R ++ + + G KD++VATDVA +G+D +++ V+N
Sbjct: 680 LAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVN 738
Score = 54 (24.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 17 KERKKQKLIQ-LGRLA----QERHEEKKKLVLSDDEDNNKDSTD-----EENDESK 62
+ERKK+K Q LGR QER +++ + + + N+D EE D+SK
Sbjct: 190 EERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKDKSK 245
Score = 50 (22.7 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ R + K + R +ER +K++ D D +KD + D +
Sbjct: 60 RSRSRSKSAERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKR 105
Score = 41 (19.5 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 46 DEDNNKDSTDEENDE 60
D D+ KD DE D+
Sbjct: 121 DRDSKKDEEDEHGDK 135
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 243 (90.6 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 56/155 (36%), Positives = 90/155 (58%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L + INVG ++ + N++Q V+
Sbjct: 258 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNL-ELSANHNILQIVDVC 316
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 317 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 376
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 377 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 411
Score = 90 (36.7 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEG-DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V ++ RR I + G + P +F P+ ++ AL + +PTPIQ QG P
Sbjct: 65 PYEVEEL-RRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPL 123
Query: 200 ALS 202
ALS
Sbjct: 124 ALS 126
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 252 (93.8 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 61/150 (40%), Positives = 84/150 (56%)
Query: 214 GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
GQRQTL+FSAT PK+IQ A L I + VGR G S N+ Q + +V + K YL
Sbjct: 486 GQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGST--SENITQTILWVYEPDKRSYL 543
Query: 274 LECLQKT-EPP-------VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVE 325
L+ L + P LIF E K+ D++ E+L +IHG + Q+ER ++
Sbjct: 544 LDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 603
Query: 326 SFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
FR G ++VAT VA++GLD +KHVIN
Sbjct: 604 CFRSGDCPILVATAVAARGLDIPHVKHVIN 633
Score = 66 (28.3 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 158 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
G +VPP SF ++L E + + KPTP+Q IP ++
Sbjct: 287 GQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIIN 331
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 245 (91.3 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 58/155 (37%), Positives = 82/155 (52%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+R + + +RQ LLFSAT I+ A L P+ I V R S V Q V +
Sbjct: 169 DIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA--SDQVTQHVHF 226
Query: 264 VKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
V ++ K L + K VL+F K + + E L G+ + AIHG K Q RTR
Sbjct: 227 VDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
++ F+ G V+VATD+A++GLD EE+ HV+N E
Sbjct: 287 ALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE 321
Score = 78 (32.5 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
SF + L ++RA+ +G ++PTPIQ Q IPA L
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL 36
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 245 (91.3 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 64/155 (41%), Positives = 84/155 (54%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQT++FSAT PK++Q AR L I + VG + S N+ Q VE V
Sbjct: 290 IRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLD-LAASHNIKQIVEVV 348
Query: 265 KQEAKIVYL----LECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
K L E L+ + VLIF K+ D I +L G A+AIHG K Q+ER
Sbjct: 349 DNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDER 408
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +MVATDVAS+G+D + I HV N
Sbjct: 409 DWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFN 443
Score = 82 (33.9 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 149 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
R+ I+V G +VP +F P +++ ++ G + PTPIQ Q P A+S
Sbjct: 105 RKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMS 158
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 265 (98.3 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 63/159 (39%), Positives = 94/159 (59%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V IF+ R RQT+LFSATMPK + + L P+ I VG GK + + + Q VE
Sbjct: 549 VMKIFANVRPDRQTVLFSATMPKIMDALVKKVLKNPVEIEVG--GKSVVASEITQIVEIR 606
Query: 265 KQEAKIVYLLECL---QKTEPPV--LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
+++K LLE L K + V LIF E+++ D + LL KG +++HGGKDQ +
Sbjct: 607 DEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVD 666
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
R ++ F+ G VM+AT VA++GLD +++K V+N +A
Sbjct: 667 RDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDA 705
Score = 53 (23.7 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDS---TDEE 57
+E K+KL +L L+ E ++ + DDED++ D+ T+EE
Sbjct: 140 EEISKRKLAKLPDLSLETTDDAPYVNQDDDEDSDGDNFAGTEEE 183
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 243 (90.6 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 56/155 (36%), Positives = 91/155 (58%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L + IN+G A ++ + N++Q V+
Sbjct: 263 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIG-ALELSANHNILQIVDVC 321
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 322 MENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPER 381
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 382 DWVLTEFRSGKAPILIATDVASRGLDVEDVKFVIN 416
Score = 90 (36.7 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 149 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
RR I V G P +F + P+ ++ L + K+PT IQ QG P ALS
Sbjct: 78 RRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALS 131
Score = 37 (18.1 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 3 NESDDEHYVPYVSVKE-RKKQKLIQLG 28
NE+ + H++ V+E R+K+++ G
Sbjct: 61 NENPEVHHMSQYDVEEYRRKREITVRG 87
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 265 (98.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 59/170 (34%), Positives = 103/170 (60%)
Query: 203 EDVRTIFSFF--RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE 260
++ + + +F+ + RQT++F+ATMP ++ AR+ L +P T+ +G GK P+ Q
Sbjct: 587 DETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGK--PTERTEQI 644
Query: 261 VEYVKQEAKIVYLLECL-QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
V + + K L+E L +K +PPV+IF +K+ D + + L G + +HGGK QE+
Sbjct: 645 VYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQ 704
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE-AK-IKKREHGV 367
R ++ + + G KD++VATDVA +G+D +++ VIN + AK I+ H +
Sbjct: 705 REYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 754
Score = 49 (22.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 14 VSVKERKKQK------LIQLGRLAQERHEEK---KKLVLSDDEDNNKDS--TDEENDE 60
+ +KE+K+ + L++ R E+ +EK KK+ +D+ D +++ENDE
Sbjct: 310 IDIKEQKRTQSKFYGDLLEKRRTEAEKEQEKVRLKKMKRKEDKQKWDDRHWSEKENDE 367
Score = 38 (18.4 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKV 63
+ER++ ++ + R E +++ S ++ N + S + + V
Sbjct: 28 RERERDRVRERDRQFDREKERRQRRSRSREDRNRRRSPERQRPRDNV 74
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 235 (87.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 55/155 (35%), Positives = 86/155 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I S R RQT ++SAT PK+++ A L I +N+G + + + Q VE +
Sbjct: 308 IRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMD-LSANHRITQIVEVI 366
Query: 265 ----KQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
K++ I +L + ++ L+F K+ D I +L G A++IHG K Q+ER
Sbjct: 367 SEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQER 426
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +MVATDVAS+G+D +I HVIN
Sbjct: 427 DWVLNEFKTGKSPIMVATDVASRGIDVRDITHVIN 461
Score = 98 (39.6 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-ED 204
D R+ + V+G DVP +F P+ ++ ++A+G +KPT IQ QG P ALS D
Sbjct: 120 DEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRD 179
Query: 205 V 205
V
Sbjct: 180 V 180
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 250 (93.1 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 55/149 (36%), Positives = 85/149 (57%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
RG RQT+LFSAT P +IQ A + I + VGR G + Q VE+V++ K +
Sbjct: 336 RGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDL--ITQRVEFVQESDKRSH 393
Query: 273 LLECL------QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVES 326
L++ L Q + L+F E K+ D + +L + A +IHG + Q+ER ++ S
Sbjct: 394 LMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRS 453
Query: 327 FRKGQKDVMVATDVASKGLDFEEIKHVIN 355
F+ G+ ++VATDVA++GLD + HV+N
Sbjct: 454 FKTGRTPILVATDVAARGLDIPHVAHVVN 482
Score = 67 (28.6 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 151 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSE 203
++ + G DVPP +F + L ++L + +PTP+Q IP L+E
Sbjct: 136 DIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE 188
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 235 (87.8 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 61/169 (36%), Positives = 93/169 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I + R RQ L+FSAT K+I+ AR L P+ I G + + ++ Q V YV
Sbjct: 437 VRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEA--NQDITQSV-YV 493
Query: 265 KQEA--KIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
K +LL L K +E VLIF KK D + + LL+K + +HG DQ +R
Sbjct: 494 FPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADR 553
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN--TEAKIKKREHGV 367
+ + F++ + D++VATDVA++GLD I++V+N T I+ H +
Sbjct: 554 NKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRI 602
Score = 103 (41.3 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 33/107 (30%), Positives = 48/107 (44%)
Query: 121 IQYNDPIKTSWRAPRCILSLPD-QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 179
I+Y K + I +L D QV ++ RR L + V G P SF E L++
Sbjct: 224 IEYEPFEKNFYTQHDDIAALDDEQVREL-RRTLGVKVTGPSPPKPVTSFGHFGFDEQLIK 282
Query: 180 ALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLFSATM 225
A+ +PTPIQ Q +P ALS D+ I G+ ++ M
Sbjct: 283 AVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 251 (93.4 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 59/170 (34%), Positives = 98/170 (57%)
Query: 187 KKPTP-IQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245
K PT ++ + AL E++ T R R T +FSATMP ++ +R L P I++
Sbjct: 875 KIPTSNLKSEDDALALQEEMMTKAGH-RLYRLTQMFSATMPPSVERLSRKYLRAPAYISI 933
Query: 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG 305
G G ++ Q++E++ + K L E L+ EPP+++F +K+ D I + +
Sbjct: 934 GDPGA--GKRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIVFVNQKKVADIISKSITKMK 991
Query: 306 VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+AVA+HGGK QE R +++ +F+ + D++VATDVA +G+D +K VIN
Sbjct: 992 YKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVIN 1041
Score = 59 (25.8 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 44 SDDEDNNKDSTDEENDES 61
+DD DNN D+ D+ ND++
Sbjct: 65 NDDNDNNDDNDDDNNDDN 82
Score = 52 (23.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 2 SNESDDEHYVPYVSVKERKKQK-LIQLGRLAQERHEEK----KKLVLSDDEDNNKDSTDE 56
+N +++ VP VS + +K I + R + +EE K+ SDD D+N ++ D
Sbjct: 9 NNLDEEKENVPQVSNPFQGIEKESIHIKRENKLTNEEDNLYIKRNEQSDDNDDNDNNDDN 68
Query: 57 ENDE 60
+N++
Sbjct: 69 DNND 72
Score = 50 (22.7 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 15 SVKERKKQKLI-QLGRLAQERHEEKKKLVLSDDEDNNKDS-TDEENDE 60
S+ +++ KL + L +R+E+ +DD DNN D+ +++ND+
Sbjct: 32 SIHIKRENKLTNEEDNLYIKRNEQSDD---NDDNDNNDDNDNNDDNDD 76
Score = 45 (20.9 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 32 QERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ER E+KKK+ +D+ S+ E+ +E +
Sbjct: 282 KEREEKKKKM--ENDKQKKMISSKEKEEEGE 310
Score = 43 (20.2 bits), Expect = 9.4e-22, Sum P(2) = 9.4e-22
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 7 DEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEN--DESKVW 64
+ H++ + + RK ++ + H K ++ + N D EN DE +
Sbjct: 322 EHHHIRHSCIDNRKHRRTEDSYEYRNDEHRTNDKKRKNEYDHINDDKEYNENVYDEDTYY 381
Query: 65 GRMSNISLLD-QHS 77
+N D +H+
Sbjct: 382 NDRNNKKFKDYKHN 395
Score = 42 (19.8 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQ 26
SN+ DD Y + K+ KK+KLI+
Sbjct: 182 SNDDDD-----YNNNKDEKKEKLIK 201
Score = 42 (19.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 45 DDEDNNKDSTDEENDES 61
+D+DNN D+ ++ N+ +
Sbjct: 74 NDDDNNDDNNNDVNNNN 90
Score = 40 (19.1 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 45 DDEDNNKDSTDEENDESKVWGRMSNISLLDQ 75
++E N+ D + DE K NI++ +Q
Sbjct: 179 EEESNDDDDYNNNKDEKKEKLIKKNITMKNQ 209
Score = 39 (18.8 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 44 SDDEDNNKDSTDEENDESKVWG-RMSNIS 71
+D +NN ++ D ND+ G + +NIS
Sbjct: 84 NDVNNNNVNNNDVNNDDVNNDGEKRNNIS 112
Score = 37 (18.1 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 38 KKKLVLSDDEDNNKDSTDEENDES 61
K++ L+++EDN +E++D++
Sbjct: 36 KRENKLTNEEDNLYIKRNEQSDDN 59
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 251 (93.4 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 59/170 (34%), Positives = 98/170 (57%)
Query: 187 KKPTP-IQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245
K PT ++ + AL E++ T R R T +FSATMP ++ +R L P I++
Sbjct: 875 KIPTSNLKSEDDALALQEEMMTKAGH-RLYRLTQMFSATMPPSVERLSRKYLRAPAYISI 933
Query: 246 GRAGKIMPSMNVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKG 305
G G ++ Q++E++ + K L E L+ EPP+++F +K+ D I + +
Sbjct: 934 GDPGA--GKRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIVFVNQKKVADIISKSITKMK 991
Query: 306 VEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+AVA+HGGK QE R +++ +F+ + D++VATDVA +G+D +K VIN
Sbjct: 992 YKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVIN 1041
Score = 59 (25.8 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 44 SDDEDNNKDSTDEENDES 61
+DD DNN D+ D+ ND++
Sbjct: 65 NDDNDNNDDNDDDNNDDN 82
Score = 52 (23.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 2 SNESDDEHYVPYVSVKERKKQK-LIQLGRLAQERHEEK----KKLVLSDDEDNNKDSTDE 56
+N +++ VP VS + +K I + R + +EE K+ SDD D+N ++ D
Sbjct: 9 NNLDEEKENVPQVSNPFQGIEKESIHIKRENKLTNEEDNLYIKRNEQSDDNDDNDNNDDN 68
Query: 57 ENDE 60
+N++
Sbjct: 69 DNND 72
Score = 50 (22.7 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 15 SVKERKKQKLI-QLGRLAQERHEEKKKLVLSDDEDNNKDS-TDEENDE 60
S+ +++ KL + L +R+E+ +DD DNN D+ +++ND+
Sbjct: 32 SIHIKRENKLTNEEDNLYIKRNEQSDD---NDDNDNNDDNDNNDDNDD 76
Score = 45 (20.9 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 32 QERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ER E+KKK+ +D+ S+ E+ +E +
Sbjct: 282 KEREEKKKKM--ENDKQKKMISSKEKEEEGE 310
Score = 43 (20.2 bits), Expect = 9.4e-22, Sum P(2) = 9.4e-22
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 7 DEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEN--DESKVW 64
+ H++ + + RK ++ + H K ++ + N D EN DE +
Sbjct: 322 EHHHIRHSCIDNRKHRRTEDSYEYRNDEHRTNDKKRKNEYDHINDDKEYNENVYDEDTYY 381
Query: 65 GRMSNISLLD-QHS 77
+N D +H+
Sbjct: 382 NDRNNKKFKDYKHN 395
Score = 42 (19.8 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQ 26
SN+ DD Y + K+ KK+KLI+
Sbjct: 182 SNDDDD-----YNNNKDEKKEKLIK 201
Score = 42 (19.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 45 DDEDNNKDSTDEENDES 61
+D+DNN D+ ++ N+ +
Sbjct: 74 NDDDNNDDNNNDVNNNN 90
Score = 40 (19.1 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 45 DDEDNNKDSTDEENDESKVWGRMSNISLLDQ 75
++E N+ D + DE K NI++ +Q
Sbjct: 179 EEESNDDDDYNNNKDEKKEKLIKKNITMKNQ 209
Score = 39 (18.8 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 44 SDDEDNNKDSTDEENDESKVWG-RMSNIS 71
+D +NN ++ D ND+ G + +NIS
Sbjct: 84 NDVNNNNVNNNDVNNDDVNNDGEKRNNIS 112
Score = 37 (18.1 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 38 KKKLVLSDDEDNNKDSTDEENDES 61
K++ L+++EDN +E++D++
Sbjct: 36 KRENKLTNEEDNLYIKRNEQSDDN 59
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 262 (97.3 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 57/162 (35%), Positives = 98/162 (60%)
Query: 209 FSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA 268
FS RQT++F+ATM I+ AR L +P +++G AGK P+ V Q V V ++
Sbjct: 502 FSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGK--PTERVEQVVYMVPEDR 559
Query: 269 KIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESF 327
K L+E L+ +PP++IF +K+ D + + L G + +HGGK Q++R ++++
Sbjct: 560 KRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQAL 619
Query: 328 RKGQKDVMVATDVASKGLDFEEIKHVINTE-AK-IKKREHGV 367
++G D++VATDVA +G+D +++ V+N + AK I+ H +
Sbjct: 620 KEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRI 661
Score = 47 (21.6 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDE--DNNKDSTDEENDESKV 63
+ R+ + + G ++R + + +DD D N+DS D E D SK+
Sbjct: 108 RRRRSRSRDRDGGRRRDRSRSRDRRDRNDDRKRDRNEDS-DNEEDVSKM 155
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 238 (88.8 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 260 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 318
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 319 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 378
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 379 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Score = 94 (38.1 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 200 ALS 202
ALS
Sbjct: 126 ALS 128
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 238 (88.8 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 260 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 318
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 319 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 378
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 379 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Score = 94 (38.1 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 200 ALS 202
ALS
Sbjct: 126 ALS 128
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 238 (88.8 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 260 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 318
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 319 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 378
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 379 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Score = 94 (38.1 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 200 ALS 202
ALS
Sbjct: 126 ALS 128
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 238 (88.8 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 259 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 317
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 318 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 377
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 378 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 412
Score = 94 (38.1 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 200 ALS 202
ALS
Sbjct: 126 ALS 128
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 237 (88.5 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 56/157 (35%), Positives = 87/157 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++N A L I +N+G + + + Q VE V
Sbjct: 293 IRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLD-LSANHRITQIVEVV 351
Query: 265 KQEAKIVYLLECLQK------TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQE 318
+ K ++ ++K ++ +LIF K+ D I +L G A++IHG K Q
Sbjct: 352 SESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQN 411
Query: 319 ERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
ER ++ F+ G+ +MVATDVAS+G+D I HV+N
Sbjct: 412 ERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLN 448
Score = 91 (37.1 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-ED 204
D RR + V+G DVP +F P ++ ++A+G PT IQ QG P ALS D
Sbjct: 105 DKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRD 164
Query: 205 VRTIFSFFRGQRQTLLF 221
V I G +TL +
Sbjct: 165 VVGIAE--TGSGKTLTY 179
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 238 (88.8 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 339 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 397
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 398 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 457
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 458 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 492
Score = 94 (38.1 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 146 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 204
Query: 200 ALS 202
ALS
Sbjct: 205 ALS 207
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 238 (88.8 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 339 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 397
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 398 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 457
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 458 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 492
Score = 94 (38.1 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 146 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 204
Query: 200 ALS 202
ALS
Sbjct: 205 ALS 207
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 238 (88.8 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 341 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 399
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 400 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 459
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 460 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 494
Score = 94 (38.1 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 148 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 206
Query: 200 ALS 202
ALS
Sbjct: 207 ALS 209
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 238 (88.8 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 341 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 399
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 400 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 459
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ +++ATDVAS+GLD E++K VIN
Sbjct: 460 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 494
Score = 94 (38.1 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 148 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 206
Query: 200 ALS 202
ALS
Sbjct: 207 ALS 209
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 224 (83.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 55/160 (34%), Positives = 88/160 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQ +++SAT PK++Q A L I IN+G + + N+ Q VE
Sbjct: 407 IRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMN-LSANHNIRQIVEIC 465
Query: 265 KQEAKIVYLLECLQKTEP---------PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315
+ K L+ L + P +++F E K V+ I + + +G A +IHG K
Sbjct: 466 TEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDK 525
Query: 316 DQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q ER ++ FR G+ ++++ATDVAS+GLD E++++VIN
Sbjct: 526 TQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 565
Score = 116 (45.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 134 PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQ 193
P + QV +I RR L I V G+++P SF LP ++ ++ +G KPT IQ
Sbjct: 206 PNTLAKSEQQVAEI-RRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQ 264
Query: 194 VQGIPAALS 202
QG P ALS
Sbjct: 265 SQGWPIALS 273
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 270 (100.1 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 63/161 (39%), Positives = 93/161 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I S R RQT+LFSAT P+ ++ AR L KPI I VG + P + Q VE
Sbjct: 712 VMKILSNVRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPE--ITQIVEVC 769
Query: 265 KQEAKIVYLLECL-------QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ 317
+E K V LLE L + + LIF ++++ D + L+ KG ++IHGGKDQ
Sbjct: 770 NEEKKFVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQ 829
Query: 318 EERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
+R ++E F+ G V++AT VA++GLD +++K V+N +A
Sbjct: 830 IDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDA 870
Score = 41 (19.5 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE 60
+E ++KL +L + + K + D+D++ D D E +E
Sbjct: 329 EESTRRKLERLPTPPLDDADASKTAETNADDDDDVDMQDGETEE 372
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 235 (87.8 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 56/153 (36%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I + +RQTL+++AT PK+++ A LV P+ +N+GR ++ + + Q VE V
Sbjct: 602 IRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVV 661
Query: 265 KQEAKIVYLLECLQKTE--PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
Q K L + L+ E V+IF K+ D + + + AV IHG K Q ER
Sbjct: 662 PQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDW 720
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ V++ATDVA++GLD ++I+ VIN
Sbjct: 721 VLNQFRSGKSCVLIATDVAARGLDIKDIRVVIN 753
Score = 101 (40.6 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 126 PIKTSWRAPRCILSLPDQVH----DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 181
P K+ R P + S PD H +I R+ + G+++P +F LP ++R L
Sbjct: 393 PNKSLVR-PHFVTS-PDVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILREL 450
Query: 182 EAKGIKKPTPIQVQGIPAAL-SEDVRTI 208
+ G PTPIQ Q P AL S D+ I
Sbjct: 451 LSAGFPSPTPIQAQTWPIALQSRDIVAI 478
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 275 (101.9 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 69/192 (35%), Positives = 104/192 (54%)
Query: 174 PESLVRALEA--KGIKKPTPIQVQGIPAALS----EDVRTIFSFFRGQRQTLLFSATMPK 227
P L+ LEA +K+ T + + L +R I R RQTL++SAT PK
Sbjct: 258 PGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 317
Query: 228 KIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV----KQEAKIVYLLECLQKTEPP 283
++Q R L PI + +G ++ S + Q VE + K++ + +L L + +
Sbjct: 318 EVQQLTRDYLNDPIQVTIGSL-ELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNK 376
Query: 284 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASK 343
+L+FA K+ D I YL G A+AIHG K+Q ER ++ FRKG+ +MVATDVA++
Sbjct: 377 ILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAAR 436
Query: 344 GLDFEEIKHVIN 355
G+D + I HVIN
Sbjct: 437 GIDVKGITHVIN 448
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 255 (94.8 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 54/160 (33%), Positives = 94/160 (58%)
Query: 203 EDVRTIFS-FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
ED++TI S +RQTL+F+AT PK+++ A + + P+ + VG ++ + + Q V
Sbjct: 315 EDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVV 374
Query: 262 EYVKQ---EAKIVYLLE---CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315
E + + E K++ LL + ++ +LIFA K++ I +L AIHG
Sbjct: 375 EVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDL 434
Query: 316 DQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q++RT ++ +F+ GQ ++++ATDVA++GLD +K VIN
Sbjct: 435 SQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVIN 474
Score = 41 (19.5 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 14 VSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
V + + KKQ+ ++ ++ ++ KK E +K ++ ES
Sbjct: 55 VEIADSKKQRKLEKQEKKDKKDKKDKKEKKEKKEKKHKKEKKHKDSES 102
Score = 40 (19.1 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVWGRMSNISLLDQ 75
K+ KK K + + ++ + KK+ D E + + ++ S + + S +S + Q
Sbjct: 71 KKDKKDKKDKKEKKEKKEKKHKKEKKHKDSESSPVEPAANDSSSSTNYTQSSKLSSVSQ 129
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 237 (88.5 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 61/153 (39%), Positives = 85/153 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + +V Q VE +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEA--NEDVTQIVEIL 478
Query: 265 KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+K +L L + + VL+F KK + + + L +G +HG DQ ER +
Sbjct: 479 HSGSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNK 538
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+K V+VATDVA++GLD IK VIN
Sbjct: 539 VISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 571
Score = 92 (37.4 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 141 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 200
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 201 LS 202
LS
Sbjct: 288 LS 289
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 273 (101.2 bits), Expect = 6.9e-23, P = 6.9e-23
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 350 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEELDKRSF 407
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ DA+ ++L +G +IHG + Q +R ++ FR G
Sbjct: 408 LLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 467
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 468 KSPILVATAVAARGLDISNVKHVIN 492
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 230 (86.0 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 54/145 (37%), Positives = 83/145 (57%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
R +QT + SAT P IQN A+ L KPI I VG GK + N+ Q VE +++ K+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKT--NNNIYQFVEIIEESKKVFR 959
Query: 273 LLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L + VLIF K+ + D ++ L + +HGG+DQ +R ++E F+K
Sbjct: 960 LLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKE 1019
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ V++AT V ++G+D + I VIN
Sbjct: 1020 ENKVLIATSVMARGIDIKNIILVIN 1044
Score = 94 (38.1 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 32/99 (32%), Positives = 48/99 (48%)
Query: 126 PIKTS-WRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRLMKLPESLVRALEA 183
PIK + + + I ++ D D+ R+N I+V G + P F LP +++ LE
Sbjct: 681 PIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEK 740
Query: 184 KGIKKPTPIQVQGIPAAL-SEDVRTIFSFFRGQRQTLLF 221
K KK IQ+Q IPA + DV I G+ + LF
Sbjct: 741 KNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLF 779
Score = 49 (22.3 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 46 DEDNNKDSTDEENDESKVWGRM 67
D +NN D D+++D+ V+ ++
Sbjct: 575 DNNNNNDDDDDDDDDDDVFHKL 596
Score = 49 (22.3 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 35 HEEKKKLV-LSDDEDNNKDSTDEENDE-SKVWGRMSNISLLDQHS 77
HE+++K + ++ N++ +E E KV MSN+ ++ +++
Sbjct: 318 HEQREKSININKISKENQEICEENKKEIQKVKENMSNVKVITENN 362
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 44 SDDEDNNKDSTDEENDE 60
SD+ +NN D D+++D+
Sbjct: 574 SDNNNNNDDDDDDDDDD 590
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 5 SDDEHYVPY-VSVKER-KKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
S+ +Y Y KER KK+K + ++ +K DE+ NKD ++ N+ +
Sbjct: 242 SNSANYSSYDEETKERDKKKKSYHHDFVLDDK--KKNYHNYESDEETNKDESNNNNNNN 298
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
NE + ++Y Y K+++K+K +ER + KK+ +DD+ ++ +S S+
Sbjct: 162 NERNKKYY-KYEDKKKKEKEK-----EKEKER-KRKKRYHHTDDDQDHLESYSSSRSSSR 214
Score = 46 (21.3 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 14 VSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE 60
+++KE++K K +L E K+K S+ N S DEE E
Sbjct: 217 INIKEKQKHK-----KLYSHEKERKRKKRYSNSA--NYSSYDEETKE 256
Score = 45 (20.9 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEEN-DESK 62
EE KK D + N KD+ +E N +SK
Sbjct: 599 EELKKKTEEDMKRNEKDNMNESNLTDSK 626
Score = 42 (19.8 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 9 HYVPYVSVKERKKQKLIQLG-RLAQERHEEKKKLVLSDDEDNNKDSTDEEN 58
+Y+ S +E+K K + ++ ++ H++ ++ D+ +NK E N
Sbjct: 6 NYIYKDSKEEKKNDKDKDMDIKVKKQDHDDSDDVLKRDNISSNKKKDVERN 56
Score = 39 (18.8 bits), Expect = 8.1e-22, Sum P(3) = 8.1e-22
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 3 NESDDEHYVPYVSVKERKK-QKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
++SDD +S ++K ++ E E KKK D+ K S D+ +++
Sbjct: 34 DDSDDVLKRDNISSNKKKDVERNTYYDNSYNEEEENKKK---KKKRDSKKYSVDDSYNKT 90
Query: 62 K 62
K
Sbjct: 91 K 91
Score = 38 (18.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 45 DDEDNNKDSTDEENDESKV 63
D+ DN+K+ + +E+K+
Sbjct: 412 DESDNSKEKEFDIKNENKI 430
Score = 38 (18.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEE--KKKLV----LSDDEDNNKD 52
N+ DDE + K + I + + H++ KKK+ + +D +N D
Sbjct: 408 NDQDDESDNSKEKEFDIKNENKINVQNVDDNNHKDDTKKKIYENHKIKEDSNNTND 463
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 44 SDDEDNNKDSTDE 56
+++ +NNKDS+ E
Sbjct: 300 NNNNNNNKDSSSE 312
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 37 EKKKLVLSDDEDNNKDSTDEE 57
E K V + D++N+KD T ++
Sbjct: 427 ENKINVQNVDDNNHKDDTKKK 447
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 230 (86.0 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 54/145 (37%), Positives = 83/145 (57%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
R +QT + SAT P IQN A+ L KPI I VG GK + N+ Q VE +++ K+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKT--NNNIYQFVEIIEESKKVFR 959
Query: 273 LLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L + VLIF K+ + D ++ L + +HGG+DQ +R ++E F+K
Sbjct: 960 LLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKE 1019
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ V++AT V ++G+D + I VIN
Sbjct: 1020 ENKVLIATSVMARGIDIKNIILVIN 1044
Score = 94 (38.1 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 32/99 (32%), Positives = 48/99 (48%)
Query: 126 PIKTS-WRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRLMKLPESLVRALEA 183
PIK + + + I ++ D D+ R+N I+V G + P F LP +++ LE
Sbjct: 681 PIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEK 740
Query: 184 KGIKKPTPIQVQGIPAAL-SEDVRTIFSFFRGQRQTLLF 221
K KK IQ+Q IPA + DV I G+ + LF
Sbjct: 741 KNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLF 779
Score = 49 (22.3 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 46 DEDNNKDSTDEENDESKVWGRM 67
D +NN D D+++D+ V+ ++
Sbjct: 575 DNNNNNDDDDDDDDDDDVFHKL 596
Score = 49 (22.3 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 35 HEEKKKLV-LSDDEDNNKDSTDEENDE-SKVWGRMSNISLLDQHS 77
HE+++K + ++ N++ +E E KV MSN+ ++ +++
Sbjct: 318 HEQREKSININKISKENQEICEENKKEIQKVKENMSNVKVITENN 362
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 44 SDDEDNNKDSTDEENDE 60
SD+ +NN D D+++D+
Sbjct: 574 SDNNNNNDDDDDDDDDD 590
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 5 SDDEHYVPY-VSVKER-KKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
S+ +Y Y KER KK+K + ++ +K DE+ NKD ++ N+ +
Sbjct: 242 SNSANYSSYDEETKERDKKKKSYHHDFVLDDK--KKNYHNYESDEETNKDESNNNNNNN 298
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
NE + ++Y Y K+++K+K +ER + KK+ +DD+ ++ +S S+
Sbjct: 162 NERNKKYY-KYEDKKKKEKEK-----EKEKER-KRKKRYHHTDDDQDHLESYSSSRSSSR 214
Score = 46 (21.3 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 14 VSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE 60
+++KE++K K +L E K+K S+ N S DEE E
Sbjct: 217 INIKEKQKHK-----KLYSHEKERKRKKRYSNSA--NYSSYDEETKE 256
Score = 45 (20.9 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEEN-DESK 62
EE KK D + N KD+ +E N +SK
Sbjct: 599 EELKKKTEEDMKRNEKDNMNESNLTDSK 626
Score = 42 (19.8 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 9 HYVPYVSVKERKKQKLIQLG-RLAQERHEEKKKLVLSDDEDNNKDSTDEEN 58
+Y+ S +E+K K + ++ ++ H++ ++ D+ +NK E N
Sbjct: 6 NYIYKDSKEEKKNDKDKDMDIKVKKQDHDDSDDVLKRDNISSNKKKDVERN 56
Score = 39 (18.8 bits), Expect = 8.1e-22, Sum P(3) = 8.1e-22
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 3 NESDDEHYVPYVSVKERKK-QKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
++SDD +S ++K ++ E E KKK D+ K S D+ +++
Sbjct: 34 DDSDDVLKRDNISSNKKKDVERNTYYDNSYNEEEENKKK---KKKRDSKKYSVDDSYNKT 90
Query: 62 K 62
K
Sbjct: 91 K 91
Score = 38 (18.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 45 DDEDNNKDSTDEENDESKV 63
D+ DN+K+ + +E+K+
Sbjct: 412 DESDNSKEKEFDIKNENKI 430
Score = 38 (18.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEE--KKKLV----LSDDEDNNKD 52
N+ DDE + K + I + + H++ KKK+ + +D +N D
Sbjct: 408 NDQDDESDNSKEKEFDIKNENKINVQNVDDNNHKDDTKKKIYENHKIKEDSNNTND 463
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 44 SDDEDNNKDSTDE 56
+++ +NNKDS+ E
Sbjct: 300 NNNNNNNKDSSSE 312
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 37 EKKKLVLSDDEDNNKDSTDEE 57
E K V + D++N+KD T ++
Sbjct: 427 ENKINVQNVDDNNHKDDTKKK 447
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 273 (101.2 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEESDKRSF 429
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 430 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 489
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 490 KSPILVATAVAARGLDISNVKHVIN 514
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 273 (101.2 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEESDKRSF 430
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 431 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 491 KSPILVATAVAARGLDISNVKHVIN 515
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 273 (101.2 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEESDKRSF 430
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 431 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 491 KSPILVATAVAARGLDISNVKHVIN 515
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 273 (101.2 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEESDKRSF 430
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 431 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 491 KSPILVATAVAARGLDISNVKHVIN 515
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 232 (86.7 bits), Expect = 7.6e-23, Sum P(3) = 7.6e-23
Identities = 58/154 (37%), Positives = 91/154 (59%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V++I R RQ L+FSAT +K++ AR ALV P+ I G G+ + ++ Q+V +
Sbjct: 434 VKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEA--NADIEQKVFVM 491
Query: 265 K-QEAKIVYLLECLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+ Q+ K+ +L+ L + VLIF KK D + + + L +K + V +HG Q ER
Sbjct: 492 QNQDVKLHWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERN 551
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ FRK + ++VATDVA++GLD EI+ VIN
Sbjct: 552 ENLLKFRK-KSQILVATDVAARGLDISEIRTVIN 584
Score = 92 (37.4 bits), Expect = 7.6e-23, Sum P(3) = 7.6e-23
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 146 DIIR-RN-LRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS- 202
D+IR +N + + V G P CSF + L+ A+ ++PTPIQ IP+ALS
Sbjct: 243 DVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSG 302
Query: 203 EDVRTIFSFFRGQRQTLLFSA 223
DV I G+ L+ A
Sbjct: 303 RDVLGIAKTGSGKTAAYLWPA 323
Score = 37 (18.1 bits), Expect = 7.6e-23, Sum P(3) = 7.6e-23
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEE 57
KE++ L+ G ++++ K+ + DDE S DE+
Sbjct: 66 KEQEYANLMAYGSTSEKQSRRKR---IYDDEYLEGGSDDEK 103
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 265 (98.3 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 58/142 (40%), Positives = 90/142 (63%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274
+RQT++FSAT K+IQ A+ L K + VG+ G + + Q + +V++E K YLL
Sbjct: 580 KRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGST--NEYIKQNLVFVEEENKCNYLL 637
Query: 275 ECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333
L + + ++F E K+ D I +L + + AV IHG K Q+ER R+++ F++G K+
Sbjct: 638 NLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 334 VMVATDVASKGLDFEEIKHVIN 355
++VATDVA++GLD IKHVIN
Sbjct: 698 ILVATDVAARGLDISNIKHVIN 719
Score = 37 (18.1 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 5/19 (26%), Positives = 14/19 (73%)
Query: 43 LSDDEDNNKDSTDEENDES 61
L+D+ +NN ++++ N+ +
Sbjct: 96 LNDNNNNNNNNSNNSNNNN 114
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 265 (98.3 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 58/142 (40%), Positives = 90/142 (63%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274
+RQT++FSAT K+IQ A+ L K + VG+ G + + Q + +V++E K YLL
Sbjct: 580 KRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGST--NEYIKQNLVFVEEENKCNYLL 637
Query: 275 ECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333
L + + ++F E K+ D I +L + + AV IHG K Q+ER R+++ F++G K+
Sbjct: 638 NLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 334 VMVATDVASKGLDFEEIKHVIN 355
++VATDVA++GLD IKHVIN
Sbjct: 698 ILVATDVAARGLDISNIKHVIN 719
Score = 37 (18.1 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 5/19 (26%), Positives = 14/19 (73%)
Query: 43 LSDDEDNNKDSTDEENDES 61
L+D+ +NN ++++ N+ +
Sbjct: 96 LNDNNNNNNNNSNNSNNNN 114
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 273 (101.2 bits), Expect = 7.7e-23, P = 7.7e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 374 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEESDKRSF 431
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 432 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 491
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 492 KSPILVATAVAARGLDISNVKHVIN 516
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 273 (101.2 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 58/147 (39%), Positives = 89/147 (60%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 415 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEESDKRSF 472
Query: 273 LLECLQKTEPP----VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFR 328
LL+ L TE L+F E K+ D++ ++L +G +IHG + Q +R ++ FR
Sbjct: 473 LLDLLNATESGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 532
Query: 329 KGQKDVMVATDVASKGLDFEEIKHVIN 355
G+ ++VAT VA++GLD +KHVIN
Sbjct: 533 SGKSPILVATAVAARGLDISNVKHVIN 559
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 250 (93.1 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 51/156 (32%), Positives = 96/156 (61%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+ I R +RQT+LFSAT P++++ AR L KP+ I VG G+ + + ++ Q VE
Sbjct: 700 ITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVG--GRSVVNKDITQLVEVR 757
Query: 265 KQEAKIVYLLECLQK-TEP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+ + + LLE L + +E +L+F + ++ DA++ ++ +++HGGKDQ +R
Sbjct: 758 PESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRES 817
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
++ F+ ++++AT VA++GLD +E++ V+N +A
Sbjct: 818 TISDFKNDVCNLLIATSVAARGLDVKELELVVNFDA 853
Score = 63 (27.2 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 18 ERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
ERKK K + R E+ KK++ SD ED+ DEE ++ K
Sbjct: 34 ERKKDKGSEKRR---EKDRRKKRVKSSDSEDDYDRDDDEEREKRK 75
Score = 59 (25.8 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEE-NDESK 62
KE++++K + GR ++ K+K V + E K + +EE DE K
Sbjct: 229 KEKEREKSV--GRSSRHEDSPKRKSVEDNGEKKEKKTREEELEDEQK 273
Score = 53 (23.7 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 14/62 (22%), Positives = 35/62 (56%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDES 61
S++S+D++ +E++K+K + R ++R + + + S D +++ + DE D+
Sbjct: 56 SSDSEDDYDRDDDEEREKRKEKERERRRRDKDRVKRRSERRKSSDSEDDVEEEDER-DKR 114
Query: 62 KV 63
+V
Sbjct: 115 RV 116
Score = 50 (22.7 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVWGRMSN 69
KER+++K R +ER E +K+ V + +D + + K G N
Sbjct: 146 KEREREK--DRERREREREEREKERVKERERREREDGERDRREREKERGSRRN 196
Score = 49 (22.3 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 27 LGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVWGRMSNISLLDQHS 77
LGR+ Q + +D+D + D DEE + + +SL+D HS
Sbjct: 433 LGRIIQGEDSDSDYSEPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVD-HS 482
Score = 42 (19.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 16 VKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
VKER++++ R +ER +E+ + E + + +E +D+ K
Sbjct: 169 VKERERREREDGERDRREREKERGSRRNRERERSREVGNEESDDDVK 215
Score = 41 (19.5 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 18 ERKK--QKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVW 64
E+KK +++ + R QE E K+K ++ E D+ E K W
Sbjct: 271 EQKKLDEEVEKRRRRVQEWQELKRKKEEAESESKG-DADGNEPKAGKAW 318
Score = 40 (19.1 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKD--STDEEND 59
S + DDE ++ V + +K L+ ++ E + + + D ++ +T +
Sbjct: 456 SLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKEL 515
Query: 60 ESKVWGR 66
E KV G+
Sbjct: 516 ELKVHGK 522
Score = 38 (18.4 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 4 ESDDEHYVPYVSVKER-KKQKLIQLGR---LAQERHEEKKKLVLSDDEDNNKDSTDEEND 59
E +DE V+ KER ++ G+ +ER E K K + + ++ EE +
Sbjct: 106 EEEDERDKRRVNEKERGHREHERDRGKDRKRDREREERKDKEREREKDRERREREREERE 165
Query: 60 ESKV 63
+ +V
Sbjct: 166 KERV 169
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 272 (100.8 bits), Expect = 9.7e-23, P = 9.7e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEEADKRSF 430
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 431 LLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 491 KSPILVATAVAARGLDISNVKHVIN 515
>UNIPROTKB|B4E132 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268804 HOVERGEN:HBG015893 UniGene:Hs.99120
HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK303638 IPI:IPI00908506
ProteinModelPortal:B4E132 SMR:B4E132 STRING:B4E132
Ensembl:ENST00000420730 Uniprot:B4E132
Length = 407
Score = 263 (97.6 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 56/145 (38%), Positives = 88/145 (60%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V+ K +
Sbjct: 118 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEDLDKRSF 175
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 176 LLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 235
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD ++HVIN
Sbjct: 236 KSPILVATAVAARGLDISNVRHVIN 260
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 270 (100.1 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEEIDKRSF 430
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 431 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 491 KSPILVATAVAARGLDISNVKHVIN 515
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 270 (100.1 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEEIDKRSF 430
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 431 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 490
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD +KHVIN
Sbjct: 491 KSPILVATAVAARGLDISNVKHVIN 515
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 208 (78.3 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 45/138 (32%), Positives = 81/138 (58%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV-KQEAKIVYLLECLQ 278
LFSATM ++++ S + PI I +G ++ V Q++ YV K+E K++ + + +Q
Sbjct: 379 LFSATMNQQVEELGHSIMKNPIKIIIGEQNAA--AITVDQKLIYVGKEEGKLLAVRQLIQ 436
Query: 279 K-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K EPP+LIF + K+ + + L+ G+ IH + Q +R V+ FR G+ V++
Sbjct: 437 KGLEPPILIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLIC 496
Query: 338 TDVASKGLDFEEIKHVIN 355
T++ ++G+DF+ + VIN
Sbjct: 497 TELMARGMDFKGVNFVIN 514
Score = 90 (36.7 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 149 RRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAALSED 204
R RI V+G D+P F + K+ + L+ + G K+P+PIQ+Q IP L E
Sbjct: 178 RNKHRIKVDGTDIPDPMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKE- 236
Query: 205 VRTIFSFF-RGQRQTLLFSATM------PKKIQNFARSALVKP 240
R + + G +T FS + PKK + F RS ++ P
Sbjct: 237 -REVVAIAPTGSGKTASFSIPILQALYEPKK-EGF-RSVIIAP 276
Score = 66 (28.3 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 12 PYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE 60
P +S K+ KQK + + E K+ +D+DN+ D D++ DE
Sbjct: 56 PVISKKDNIKQKKEEEEDNDNDNEESKEDDDFVEDDDNDDDDDDDDEDE 104
Score = 59 (25.8 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
N+ DD+ +E K+++ I+ ++ + EE L +E+ N D +D+ +D K
Sbjct: 93 NDDDDDDDDEDEENEEPKEKEFIK-HQVNNDEEEEDITLFNKSNENENSDDSDDSDDSGK 151
Score = 40 (19.1 bits), Expect = 8.7e-20, Sum P(3) = 8.7e-20
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 45 DDEDNNKDSTDEENDESKV 63
++EDN+ D+ + + D+ V
Sbjct: 70 EEEDNDNDNEESKEDDDFV 88
Score = 37 (18.1 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 1 SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNK-DSTD 55
+ NE+ D+ S K + K K ++ + QE + K+++ ++ K D TD
Sbjct: 135 NENENSDDSDDSDDSGKNKNKNKNKKVSKETQE-DKHKREIATFRNKHRIKVDGTD 189
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 232 (86.7 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 59/153 (38%), Positives = 84/153 (54%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR LV PI + G G+ + + EV
Sbjct: 425 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQS 484
Query: 265 KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
Q+ K +L L + + VL+F KK + + + L+ +G +HG DQ ER +
Sbjct: 485 GQD-KWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNK 543
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+K V+VATDVA++GLD I+ V+N
Sbjct: 544 VIADFKKKNLPVLVATDVAARGLDIPSIRTVVN 576
Score = 93 (37.8 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 148 IRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
+RR L + V G P SF E L+ + +PTPIQ QG+P ALS
Sbjct: 239 LRRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALS 293
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 268 (99.4 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 366 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEELDKRSF 423
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ +L + +IHG + Q++R ++ FR G
Sbjct: 424 LLDLLNATGRDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSG 483
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+K ++VAT VA++GLD +KHVIN
Sbjct: 484 RKPILVATAVAARGLDISNVKHVIN 508
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 268 (99.4 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 57/145 (39%), Positives = 89/145 (61%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V++ K +
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEELDKRSF 429
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ +L + +IHG + Q++R ++ FR G
Sbjct: 430 LLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSG 489
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+K ++VAT VA++GLD +KHVIN
Sbjct: 490 RKPILVATAVAARGLDISNVKHVIN 514
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 227 (85.0 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 56/157 (35%), Positives = 89/157 (56%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L INVG ++ + N++Q V+
Sbjct: 260 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVC 318
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+++ K++ L+E + + E +IF E K+ D + + G A+ IHG K Q ER
Sbjct: 319 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 378
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDF--EEIKHVIN 355
+ FR G+ +++ATDVAS+GL F E++K VIN
Sbjct: 379 DWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVIN 415
Score = 94 (38.1 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 141 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 199
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 200 ALS 202
ALS
Sbjct: 126 ALS 128
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 229 (85.7 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 61/154 (39%), Positives = 85/154 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + +V Q VE +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEA--NEDVTQIVEIL 478
Query: 265 KQ-EAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+K +L L + + VL+F KK + + + L +G +HG DQ ER
Sbjct: 479 HSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERN 538
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + F+K V+VATDVA++GLD IK VIN
Sbjct: 539 KVISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Score = 92 (37.4 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 141 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 200
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 201 LS 202
LS
Sbjct: 288 LS 289
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 229 (85.7 bits), Expect = 7.9e-22, Sum P(2) = 7.9e-22
Identities = 61/154 (39%), Positives = 85/154 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + +V Q VE +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEA--NEDVTQIVEIL 478
Query: 265 KQ-EAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+K +L L + + VL+F KK + + + L +G +HG DQ ER
Sbjct: 479 HSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERN 538
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + F+K V+VATDVA++GLD IK VIN
Sbjct: 539 KVISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Score = 92 (37.4 bits), Expect = 7.9e-22, Sum P(2) = 7.9e-22
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 141 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 200
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 201 LS 202
LS
Sbjct: 288 LS 289
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 229 (85.7 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 61/154 (39%), Positives = 85/154 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + +V Q VE +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEA--NEDVTQIVEIL 478
Query: 265 KQ-EAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+K +L L + + VL+F KK + + + L +G +HG DQ ER
Sbjct: 479 HSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERN 538
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + F+K V+VATDVA++GLD IK VIN
Sbjct: 539 KVISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Score = 92 (37.4 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 141 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 200
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 201 LS 202
LS
Sbjct: 288 LS 289
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 229 (85.7 bits), Expect = 8.1e-22, Sum P(2) = 8.1e-22
Identities = 61/154 (39%), Positives = 85/154 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + +V Q VE +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEA--NEDVTQIVEIL 478
Query: 265 KQ-EAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+K +L L + + VL+F KK + + + L +G +HG DQ ER
Sbjct: 479 HSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERN 538
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + F+K V+VATDVA++GLD IK VIN
Sbjct: 539 KVISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Score = 92 (37.4 bits), Expect = 8.1e-22, Sum P(2) = 8.1e-22
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 141 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 200
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 201 LS 202
LS
Sbjct: 288 LS 289
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 263 (97.6 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 56/145 (38%), Positives = 88/145 (60%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V+ K +
Sbjct: 368 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEDLDKRSF 425
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 426 LLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 485
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD ++HVIN
Sbjct: 486 KSPILVATAVAARGLDISNVRHVIN 510
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 263 (97.6 bits), Expect = 9.1e-22, P = 9.1e-22
Identities = 56/145 (38%), Positives = 88/145 (60%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+G R T++FSAT PK+IQ AR L + I + VGR G S N+ Q+V +V+ K +
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST--SENITQKVVWVEDLDKRSF 428
Query: 273 LLECLQKT--EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
LL+ L T + L+F E K+ D++ ++L +G +IHG + Q +R ++ FR G
Sbjct: 429 LLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 488
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VA++GLD ++HVIN
Sbjct: 489 KSPILVATAVAARGLDISNVRHVIN 513
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 258 (95.9 bits), Expect = 9.8e-22, P = 9.8e-22
Identities = 57/153 (37%), Positives = 85/153 (55%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+R + +RQTLLFSATMP I+ A+ LV P+T+ VG + P++ V +
Sbjct: 164 DIRRVLKHLPPRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGT---VAPAVTVAHALYP 220
Query: 264 VKQEAKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
V+Q K LLE L+ T+ VLIF K + E L G A ++ G Q R
Sbjct: 221 VEQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQA 280
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+++ FR G ++VATD+A++G+D ++ HVIN
Sbjct: 281 ALDGFRDGTFQILVATDIAARGIDVSQVSHVIN 313
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 261 (96.9 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 56/141 (39%), Positives = 86/141 (60%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275
RQTL+FSAT P+ IQ AR L + ++VGR G S N+ Q++ YV+ + K +L+
Sbjct: 379 RQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST--SENITQKILYVEDDEKKSVILD 436
Query: 276 CLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV 334
L E + ++F E K+ D + +YL +G A AIHG + Q ER +++ +F+ G +
Sbjct: 437 LLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPI 496
Query: 335 MVATDVASKGLDFEEIKHVIN 355
+VAT VA++GLD + HVIN
Sbjct: 497 LVATAVAARGLDIPNVSHVIN 517
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 235 (87.8 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 57/143 (39%), Positives = 83/143 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSAL-VKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
+RQTL+FSAT P+ IQ A L V I + VG G +V Q V V Q +K L
Sbjct: 463 ERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACS--DVEQTVVQVDQYSKRDQL 520
Query: 274 LECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
LE L+ T ++F E K+ D I +L + + +IHG ++Q ER +++ FR G
Sbjct: 521 LELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHC 580
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E+++HV+N
Sbjct: 581 PVLVATSVAARGLDIEQVQHVVN 603
Score = 77 (32.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 156 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
V G + P A +F L +SL + + G KPTP+Q GIP
Sbjct: 267 VSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIP 309
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 226 (84.6 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 61/154 (39%), Positives = 85/154 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + +V Q VE +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEA--NEDVTQIVEIL 478
Query: 265 KQ-EAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+K +L L + + VL+F KK + + + L +G +HG DQ ER
Sbjct: 479 HSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERN 538
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + F+K V+VATDVA++GLD IK VIN
Sbjct: 539 KVILDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Score = 92 (37.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 141 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 200
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 201 LS 202
LS
Sbjct: 288 LS 289
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 220 (82.5 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + + E+ +
Sbjct: 423 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEI-FP 481
Query: 265 KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+K +L L + + VL+F KK + + + L + +HG DQ ER +
Sbjct: 482 SGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNK 541
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+K ++VATDVA++GLD IK VIN
Sbjct: 542 VISEFKKKGIPILVATDVAARGLDIPSIKTVIN 574
Score = 91 (37.1 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 137 ILSL-PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 195
I SL P QV ++ R L + V G P SF E L+ + +PTPIQ Q
Sbjct: 226 ITSLTPQQVVEL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQ 284
Query: 196 GIPAALS 202
G+P A+S
Sbjct: 285 GVPVAMS 291
Score = 44 (20.5 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 1 SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKD 52
+ ++SDD+ +++ Q + RL + E+K + DD + D
Sbjct: 107 ADSDSDDDPLEAFMAESVENDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDD 158
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 220 (82.5 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + + E+ +
Sbjct: 416 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEI-FP 474
Query: 265 KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+K +L L + + VL+F KK + + + L + +HG DQ ER +
Sbjct: 475 SGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNK 534
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+K ++VATDVA++GLD IK VIN
Sbjct: 535 VISEFKKKGIPILVATDVAARGLDIPSIKTVIN 567
Score = 91 (37.1 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 137 ILSL-PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 195
I SL P QV ++ R L + V G P SF E L+ + +PTPIQ Q
Sbjct: 219 ITSLTPQQVVEL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQ 277
Query: 196 GIPAALS 202
G+P A+S
Sbjct: 278 GVPVAMS 284
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 236 (88.1 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 54/153 (35%), Positives = 80/153 (52%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+++I QTLLFSATMP +++ P+TI +G P+ +V V
Sbjct: 164 DIQSILKCLVQPHQTLLFSATMPPEVRKLTLETQTNPVTIQIGTQA---PASSVSHSVYP 220
Query: 264 VKQEAKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
VK K L+E L+ TE VLIFA K + + + + G ++ G Q R
Sbjct: 221 VKNHQKTPLLIEILKTTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHA 280
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E FR+G ++VATD+A++GLD + I HVIN
Sbjct: 281 VMEGFRRGNFKILVATDIAARGLDIDHISHVIN 313
Score = 64 (27.6 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
SF +++ + A G ++PTPIQ Q IP L DV
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDV 41
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 238 (88.8 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 52/146 (35%), Positives = 89/146 (60%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE-VEYVKQEAKIV 271
R RQT++ SAT P ++ A+S L P+ + VG + ++N VQ+ V +V+++ K
Sbjct: 454 RPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLD--LAAVNTVQQTVLFVQEDEKKD 511
Query: 272 YLLECLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329
Y+ + + + EP VLIF KK D + L L+G+ ++HG ++Q +R +++ F+
Sbjct: 512 YVFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKD 571
Query: 330 GQKDVMVATDVASKGLDFEEIKHVIN 355
G+ ++VATD+AS+GLD +I HV N
Sbjct: 572 GRVRILVATDLASRGLDVHDITHVFN 597
Score = 64 (27.6 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 155 LVEGDD--VPPACCSFR--LMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
L +GD +P C+F P ++ + G KKPTPIQ Q P L+
Sbjct: 264 LKDGDKRTIPNPVCTFEEAFAHYP-GIMENIVRVGFKKPTPIQSQAWPVVLN 314
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 234 (87.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 56/161 (34%), Positives = 89/161 (55%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
+ + IF+ R RQ L +SAT PKK+ +FA + PI + +G + ++ + N+ Q+ +
Sbjct: 305 QQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIG-SSQLTANKNISQKFK 363
Query: 263 YVKQEA-KIVYLLECLQKT-----EPPVLIFAEKKQDVDAIHEYLLLKG--VEAVAIHGG 314
V +A K+ L++ L + + LIF K+ D + Y+ G V +HG
Sbjct: 364 IVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGD 423
Query: 315 KDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
DQ R R V+ F+ + D++VATDVAS+GLD + I HVIN
Sbjct: 424 VDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVIN 464
Score = 66 (28.3 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 31/108 (28%), Positives = 50/108 (46%)
Query: 121 IQYNDPIKTSWRAPRCILSLP--DQVH--DIIRR-NLRILVEGDDVPPACCSFRLMKLP- 174
I ++D +K + ++ LP DQ D I+ + I E + P + +P
Sbjct: 89 INWDDELKNMAPIRKRLIDLPTEDQQETMDFIKEFEISIKKENNFYLPKPID-TIESVPF 147
Query: 175 ESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLF 221
+S ++ +K +KPTP+Q G P ALS D+ I G +TL F
Sbjct: 148 QSTIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISK--TGSGKTLSF 193
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 220 (82.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 56/153 (36%), Positives = 82/153 (53%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + + E+ +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEI-FP 479
Query: 265 KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+K +L L + + VL+F KK + + + L + +HG DQ ER +
Sbjct: 480 SGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNK 539
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+K ++VATDVA++GLD IK VIN
Sbjct: 540 VISEFKKKGIPILVATDVAARGLDIPSIKTVIN 572
Score = 92 (37.4 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 137 ILSL-PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 195
I SL P QV ++ R L + V G P SF E L+ + +PTPIQ Q
Sbjct: 224 ITSLTPQQVVEL-RHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQ 282
Query: 196 GIPAALS 202
G+P A+S
Sbjct: 283 GVPVAMS 289
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 251 (93.4 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 59/155 (38%), Positives = 94/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I R RQTL++SAT PK+++ A L + I INVG A ++ + N++Q V+
Sbjct: 264 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVG-ALQLSANHNILQIVDVC 322
Query: 265 ---KQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
++E K++ LLE + + E +IF E K+ D + + G A+ IHG K+Q+ER
Sbjct: 323 NDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQER 382
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 383 DWVLNEFKYGKAPILIATDVASRGLDVEDVKFVIN 417
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 228 (85.3 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 54/144 (37%), Positives = 87/144 (60%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSM--NVVQEVEYVKQEAKIV 271
QRQTLLFSAT P++IQ A L + + VG+ G + +++Q +Y K+E K+V
Sbjct: 448 QRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKRE-KLV 506
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+L + + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 507 EILRNIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 564
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 565 CPVLVATSVAARGLDIENVQHVIN 588
Score = 76 (31.8 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 248 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLA 298
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 228 (85.3 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 54/144 (37%), Positives = 86/144 (59%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMN--VVQEVEYVKQEAKIV 271
QRQTLLFSAT P++IQ A L + + VG+ G + ++Q +Y K+E K+V
Sbjct: 447 QRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKRE-KLV 505
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+L + + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 506 EILRNIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 563
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 564 CPVLVATSVAARGLDIENVQHVIN 587
Score = 76 (31.8 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 247 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLA 297
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 219 (82.2 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 53/155 (34%), Positives = 80/155 (51%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
DV+ + + +RQ LLFSAT K I + A L P I V + + Q V
Sbjct: 173 DVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVE--RIEQRVFR 230
Query: 264 VKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+ K L + VL+F K + + EYL G+ AVAIHG K Q RT+
Sbjct: 231 LPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTK 290
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
++ F+ G+ ++VATD+A++GLD +++ HV+N E
Sbjct: 291 ALADFKAGEVRILVATDIAARGLDIDQLPHVVNFE 325
Score = 86 (35.3 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
SF + L E+LV A+EA G +PTP+Q + IPA L
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVL 36
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 223 (83.6 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 54/155 (34%), Positives = 88/155 (56%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN--VVQE 260
+D+ I QRQ LFSATMP++I+ A L I++ + + S+ VQ
Sbjct: 167 DDIEWILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQV 226
Query: 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
++ K EA +V +LE ++ TE ++IF + + E L +G + +HG +Q+ R
Sbjct: 227 SQHNKLEA-LVRVLE-VENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQAR 283
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
R+VE + G+ D+++ATDVA++GLD E I HV+N
Sbjct: 284 ERAVEQLKNGKLDILIATDVAARGLDVERIGHVVN 318
Score = 80 (33.2 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGI-PAALSEDV 205
+FR + L E+L+RAL+ G +KPTPIQ I P +D+
Sbjct: 7 TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDI 46
Score = 39 (18.8 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 132 RAPRCILSLPDQVHDIIRR 150
R P+ I+ P +V D +RR
Sbjct: 123 RGPQVIVGTPGRVMDHMRR 141
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 240 (89.5 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I + +RQTL+++AT PK+++ A LV P +N+G +++ + ++ Q +E +
Sbjct: 396 IRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVL 455
Query: 265 KQEAKIVYLLECLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
K L + L+ EP ++IF K+ D + L + A AIHG K Q ER
Sbjct: 456 APMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDD 514
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ V+VATDVA++GLD ++I+ V+N
Sbjct: 515 VLNQFRSGRTPVLVATDVAARGLDVKDIRVVVN 547
Score = 56 (24.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 150 RNLRILVEGDDVPPACCSFRLMKLPESLVR 179
R I V G VPP SF LP L+R
Sbjct: 145 RKHEITVSGGQVPPPLMSFEATGLPNELLR 174
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 251 (93.4 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 56/156 (35%), Positives = 92/156 (58%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I + R RQT+LFSAT P+ ++ AR L KP+ I VG G+ + + V Q VE
Sbjct: 589 VMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVG--GRSVVASEVEQIVEVR 646
Query: 265 KQEAKIVYLLECL-----QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
+E+K LLE L + + L+F ++++ DA+ L+ +G + +IHGGKDQ +
Sbjct: 647 PEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHD 706
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
R ++ ++ G DV++AT V ++GLD + ++ V+N
Sbjct: 707 RDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVN 742
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 215 (80.7 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 52/156 (33%), Positives = 85/156 (54%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
++++ + QRQTLLFSAT+ I +F+++ L P I V + + + Q V
Sbjct: 168 DEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTT--AAQIEQRVY 225
Query: 263 YVKQEAKIVYLLECLQ-KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+ + K ++ ++ K VLIF+ KQ VD + L GV + HG Q R
Sbjct: 226 AIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGARE 285
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
+ ++ F++G V+VATDVA++GLD E+++VIN E
Sbjct: 286 KVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFE 321
Score = 80 (33.2 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
SF + L LV L G ++PTPIQV+ IPA L+ +DV
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDV 41
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 215 (80.7 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 52/156 (33%), Positives = 85/156 (54%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
++++ + QRQTLLFSAT+ I +F+++ L P I V + + + Q V
Sbjct: 168 DEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTT--AAQIEQRVY 225
Query: 263 YVKQEAKIVYLLECLQ-KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+ + K ++ ++ K VLIF+ KQ VD + L GV + HG Q R
Sbjct: 226 AIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGARE 285
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
+ ++ F++G V+VATDVA++GLD E+++VIN E
Sbjct: 286 KVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFE 321
Score = 80 (33.2 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
SF + L LV L G ++PTPIQV+ IPA L+ +DV
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDV 41
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 227 (85.0 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 53/144 (36%), Positives = 86/144 (59%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMN--VVQEVEYVKQEAKIV 271
QRQTL+FSAT P++IQ A L + + VG+ G + ++Q +Y K+E K+V
Sbjct: 475 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKRE-KLV 533
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+L + + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 534 EILRSIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 591
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 592 CPVLVATSVAARGLDIENVQHVIN 615
Score = 75 (31.5 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 275 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILA 325
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 211 (79.3 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 53/155 (34%), Positives = 78/155 (50%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
DV+ + + +RQ LLFSAT I + A L P I V + + Q V
Sbjct: 173 DVKKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVE--RIEQRVFR 230
Query: 264 VKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+ K L + VL+F K + + EYL G+ AVAIHG K Q RT+
Sbjct: 231 LAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTK 290
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
++ F+ G +MVATD+A++GLD +++ HV+N E
Sbjct: 291 ALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE 325
Score = 93 (37.8 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
SF + L E+LVRA+EA G +PTP+Q + IPA L
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVL 36
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 226 (84.6 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 55/143 (38%), Positives = 84/143 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
QRQTL+FSAT P++IQ A L + + VG+ G +V Q V V Q +K L
Sbjct: 454 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC--RDVQQTVLQVGQFSKREKL 511
Query: 274 LECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
+E L+ + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 512 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 571
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 572 PVLVATSVAARGLDIENVQHVIN 594
Score = 75 (31.5 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 254 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILA 304
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 226 (84.6 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 55/143 (38%), Positives = 84/143 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
QRQTL+FSAT P++IQ A L + + VG+ G +V Q V V Q +K L
Sbjct: 474 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC--RDVQQTVLQVGQFSKREKL 531
Query: 274 LECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
+E L+ + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 532 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 591
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 592 PVLVATSVAARGLDIENVQHVIN 614
Score = 75 (31.5 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 274 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILA 324
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 222 (83.2 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 55/144 (38%), Positives = 88/144 (61%)
Query: 215 QRQTLLFSATMPK-KIQNFARSALVKPITINVGRAGKIMPSMNVVQE-VEYVKQEAKIVY 272
QRQTL+FSAT P+ +++A L K +TI + G++ + + VQ+ V V Q +K
Sbjct: 452 QRQTLMFSATFPRGNFKDWAGEFL-KNLTICLVAVGQVGGACSDVQQTVLQVGQYSKREK 510
Query: 273 LLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
L+E L+ E ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 511 LVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 570
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 571 CPVLVATSVAARGLDIENVQHVIN 594
Score = 80 (33.2 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q GIP L+
Sbjct: 252 ILVEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILA 302
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 226 (84.6 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 55/143 (38%), Positives = 84/143 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
QRQTL+FSAT P++IQ A L + + VG+ G +V Q V V Q +K L
Sbjct: 475 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC--RDVQQTVLQVGQFSKREKL 532
Query: 274 LECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
+E L+ + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 533 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 592
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 593 PVLVATSVAARGLDIENVQHVIN 615
Score = 75 (31.5 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 275 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILA 325
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 230 (86.0 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q+V +
Sbjct: 543 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQQVIVI 600
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 601 EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS 660
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD + + V+N
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Score = 74 (31.1 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKVWG 65
+E++K+ + +G L +E E K KK L DD+D+ D + E + ++V G
Sbjct: 172 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEVEG 222
Score = 44 (20.5 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 31 AQERHEEKKKLVLSDD-EDNNKDSTDEENDESKVWGRMSNISLLDQ 75
A+ R K+K + ++ KD D+E+++ K G L ++
Sbjct: 114 AENRSRSKEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
++KK ++ +D+D + S++EE
Sbjct: 278 DKKKGELMENDQDAMEYSSEEE 299
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 232 (86.7 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 53/153 (34%), Positives = 89/153 (58%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q V +
Sbjct: 542 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQHVIVI 599
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 600 EEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDS 659
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD +++ V+N
Sbjct: 660 IINDFKNGTCKLLVATSVAARGLDVKQLMLVVN 692
Score = 71 (30.1 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKV 63
+E++K+ + +G L +E E K KK L DD+D+++++ + E + ++V
Sbjct: 171 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKEGNEV 219
Score = 44 (20.5 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 33 ERHEEKKKLVLSDDEDNNKDSTDEENDESKV 63
E +EKKK DD++ KD + D++K+
Sbjct: 127 EVSKEKKKE--KDDKEEEKDKDAKNFDQNKL 155
Score = 40 (19.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
E+KK ++ +D+D + S++EE
Sbjct: 277 EKKKGELMENDQDAMEYSSEEE 298
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 229 (85.7 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 61/154 (39%), Positives = 85/154 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
VR+I S R RQTLLFSAT KKI+ AR L+ PI + G G+ + +V Q VE +
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEA--NEDVTQIVEIL 478
Query: 265 KQ-EAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+K +L L + + VL+F KK + + + L +G +HG DQ ER
Sbjct: 479 HSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERN 538
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ + F+K V+VATDVA++GLD IK VIN
Sbjct: 539 KVISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Score = 74 (31.1 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 156 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
V G P SF E L+ + +PTPIQ QG+P ALS
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALS 289
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 242 (90.2 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 58/142 (40%), Positives = 79/142 (55%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275
RQTL+FSAT PK+IQN A L I + VG G + N+ Q +EYV +E K YLL+
Sbjct: 440 RQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGT---TQNITQRIEYVVEEDKNSYLLD 496
Query: 276 CLQ--KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333
L K++ LIF E K+ D + +L + IHG Q ER +++SFR
Sbjct: 497 YLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATP 556
Query: 334 VMVATDVASKGLDFEEIKHVIN 355
+VATD+AS+GL + VIN
Sbjct: 557 FLVATDIASRGLHIGNVNLVIN 578
Score = 49 (22.3 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL-SEDVRTIFSFFRGQRQTLLF 221
SF + L + L+ ++ KPTP+Q +P L + D+ G+ LF
Sbjct: 248 SFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLF 303
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 224 (83.9 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 53/143 (37%), Positives = 84/143 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNV-VQEVEYVKQEAKIVY 272
QRQTLLFSAT P++IQ A L + + VG+ G + + +V V ++ K+V
Sbjct: 459 QRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVE 518
Query: 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
+L + P ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 519 ILRNIGDERP--MVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 576
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 577 PVLVATSVAARGLDIENVQHVIN 599
Score = 76 (31.8 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 259 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLA 309
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 224 (83.9 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 53/143 (37%), Positives = 84/143 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNV-VQEVEYVKQEAKIVY 272
QRQTLLFSAT P++IQ A L + + VG+ G + + +V V ++ K+V
Sbjct: 459 QRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVE 518
Query: 273 LLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
+L + P ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 519 ILRNIGDERP--MVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 576
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 577 PVLVATSVAARGLDIENVQHVIN 599
Score = 76 (31.8 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 259 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLA 309
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 224 (83.9 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 55/144 (38%), Positives = 85/144 (59%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEY-VKQEAKIVY 272
QRQTL+FSAT P++IQ A L + + VG+ G + VQ+ + V Q +K
Sbjct: 472 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGG---ACRDVQQADLQVGQYSKREK 528
Query: 273 LLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
LLE L+ + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 529 LLEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGK 588
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 589 CPVLVATSVAARGLDIENVQHVIN 612
Score = 75 (31.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
ILVE G D PPA +F L ++L + G K TP+Q IP L+
Sbjct: 272 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILA 322
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 233 (87.1 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 57/158 (36%), Positives = 94/158 (59%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSAL-VKPITINVGRAGKIMPSMNVVQEV 261
E VR I S RQ ++FSAT P + A+ + PI + +G + + +V+Q +
Sbjct: 284 EPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVD-LAANHDVMQII 342
Query: 262 EYVKQEAK---IVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ 317
E + + A+ ++ LLE K++ VL+FA K + + + +L +G +AV+IHG K Q
Sbjct: 343 EVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQ 402
Query: 318 EERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
ERTRS+ F++G ++VATDVA++GLD +++ VIN
Sbjct: 403 SERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVIN 440
Score = 50 (22.7 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR-GQRQTLLF 221
+F LPE+++ K +KP+PIQ P L D R + + G +TL F
Sbjct: 117 TFAESNLPENVLDC--CKTFEKPSPIQSHTWPFLL--DGRDLIGIAKTGSGKTLAF 168
Score = 37 (18.1 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 30 LAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVWG 65
L+ + ++K+K + E N K E+ E++ G
Sbjct: 56 LSNKEKKKKRKREEKESEKNKKKDVPEKKLEAEDLG 91
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 248 (92.4 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 183 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 241
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 242 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 301
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 302 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 336
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 230 (86.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q+V +
Sbjct: 543 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQQVIVI 600
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 601 EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS 660
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD + + V+N
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Score = 71 (30.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKVWG 65
+E++K+ + +G L +E E K KK L DD+D+ D + E + +++ G
Sbjct: 172 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEG 222
Score = 38 (18.4 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 32 QERHEEKKKLVLSDD-EDNNKDSTDEENDESKVWGRMSNISLLDQ 75
+ R K+K + ++ KD D+E+++ K G L ++
Sbjct: 115 ENRSRSKEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
++KK ++ +D+D + S++EE
Sbjct: 278 DKKKGELMENDQDAMEYSSEEE 299
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 230 (86.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q+V +
Sbjct: 543 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQQVIVI 600
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 601 EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS 660
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD + + V+N
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Score = 71 (30.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKVWG 65
+E++K+ + +G L +E E K KK L DD+D+ D + E + +++ G
Sbjct: 172 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEG 222
Score = 44 (20.5 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 31 AQERHEEKKKLVLSDD-EDNNKDSTDEENDESKVWGRMSNISLLDQ 75
A+ R K+K + ++ KD D+E+++ K G L ++
Sbjct: 114 AENRSRSKEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
++KK ++ +D+D + S++EE
Sbjct: 278 DKKKGELMENDQDAMEYSSEEE 299
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 230 (86.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q+V +
Sbjct: 543 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQQVIVI 600
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 601 EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS 660
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD + + V+N
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Score = 71 (30.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKVWG 65
+E++K+ + +G L +E E K KK L DD+D+ D + E + +++ G
Sbjct: 172 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEG 222
Score = 44 (20.5 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 31 AQERHEEKKKLVLSDD-EDNNKDSTDEENDESKVWGRMSNISLLDQ 75
A+ R K+K + ++ KD D+E+++ K G L ++
Sbjct: 114 AENRSRSKEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
++KK ++ +D+D + S++EE
Sbjct: 278 DKKKGELMENDQDAMEYSSEEE 299
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 213 (80.0 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 48/155 (30%), Positives = 83/155 (53%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN-VVQEVE 262
D+ I +RQ LLFSAT +I+ A+ + P+ I+V A ++ + +
Sbjct: 167 DIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD 226
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
K+ +V L++ + VL+F K + + YL +G+ A AIHG K Q RTR
Sbjct: 227 VKKKPDMLVKLVK--EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTR 284
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
++ F+ G+ ++VATD+A++G+D ++ V+N E
Sbjct: 285 ALADFKAGEVRILVATDIAARGIDIPQLPQVVNFE 319
Score = 80 (33.2 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 168 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
F + L +++A+E KG P+PIQ+Q IPA L+ +DV
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDV 41
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 213 (80.0 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 48/155 (30%), Positives = 83/155 (53%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN-VVQEVE 262
D+ I +RQ LLFSAT +I+ A+ + P+ I+V A ++ + +
Sbjct: 167 DIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD 226
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
K+ +V L++ + VL+F K + + YL +G+ A AIHG K Q RTR
Sbjct: 227 VKKKPDMLVKLVK--EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTR 284
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
++ F+ G+ ++VATD+A++G+D ++ V+N E
Sbjct: 285 ALADFKAGEVRILVATDIAARGIDIPQLPQVVNFE 319
Score = 80 (33.2 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 168 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
F + L +++A+E KG P+PIQ+Q IPA L+ +DV
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDV 41
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 248 (92.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 248 (92.4 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 319 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 377
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 378 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 437
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 438 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 472
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 247 (92.0 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 56/160 (35%), Positives = 92/160 (57%)
Query: 203 EDVRTIF-SFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
ED++ I +RQTL+F+AT PK+++ A + + PI +++G ++ + + Q V
Sbjct: 274 EDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIV 333
Query: 262 EYVKQEAKIVYLLECLQK--TEPP----VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315
E V K LLE L+K + P VLIFA K++ + L G AIHG
Sbjct: 334 EVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDL 393
Query: 316 DQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q++RT+++ F+ G+ ++++ATDVA++GLD +K VIN
Sbjct: 394 SQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVIN 433
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 246 (91.7 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 58/160 (36%), Positives = 91/160 (56%)
Query: 203 EDVRTIFSFFR-GQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN--VVQ 259
+D++ I S +RQT++F+AT P ++N A + + P+T+ +G P N + Q
Sbjct: 238 QDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQ 297
Query: 260 EVEYVK---QEAKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315
VE VK +E ++V +L Q+ P VL F K++ + L KG + IHG
Sbjct: 298 VVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDL 357
Query: 316 DQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q+ER RS+E+F+ G V+VATDVA++GLD +K V+N
Sbjct: 358 SQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVN 397
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 230 (86.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q+V +
Sbjct: 543 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQQVIVI 600
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 601 EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS 660
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD + + V+N
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Score = 68 (29.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKV 63
+E++K+ + +G L +E E K KK L DD+D+ D + E + +++
Sbjct: 172 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220
Score = 47 (21.6 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 31 AQERHEEKKKLVLSDD-EDNNKDSTDEENDESKVWGRMSNISLLDQ 75
A+ R K+K D ++ KD D+E+++ K G L ++
Sbjct: 114 AENRSRSKEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
++KK ++ +D+D + S++EE
Sbjct: 278 DKKKGELMENDQDAMEYSSEEE 299
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 230 (86.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q+V +
Sbjct: 543 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQQVIVI 600
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 601 EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS 660
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD + + V+N
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Score = 68 (29.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKV 63
+E++K+ + +G L +E E K KK L DD+D+ D + E + +++
Sbjct: 172 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220
Score = 47 (21.6 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 31 AQERHEEKKKLVLSDD-EDNNKDSTDEENDESKVWGRMSNISLLDQ 75
A+ R K+K D ++ KD D+E+++ K G L ++
Sbjct: 114 AENRSRSKEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
++KK ++ +D+D + S++EE
Sbjct: 278 DKKKGELMENDQDAMEYSSEEE 299
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 230 (86.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 53/153 (34%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KPI + VG G+ + +V Q+V +
Sbjct: 543 VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG--GRSVVCSDVEQQVIVI 600
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 601 EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS 660
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD + + V+N
Sbjct: 661 IINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Score = 68 (29.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDSTDEENDESKV 63
+E++K+ + +G L +E E K KK L DD+D+ D + E + +++
Sbjct: 172 EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGTEM 220
Score = 43 (20.2 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 32 QERHEEKKKLVLSDD-EDNNKDSTDEENDESKVWGRMSNISLLDQ 75
+ R K+K D ++ KD D+E+++ K G L ++
Sbjct: 115 ENRSRSKEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEE 57
++KK ++ +D+D + S++EE
Sbjct: 278 DKKKGELMENDQDAMEYSSEEE 299
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 247 (92.0 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 55/155 (35%), Positives = 94/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L + + IN+G A ++ + N++Q V+
Sbjct: 250 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIG-ALELSANHNILQIVDVC 308
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 309 HDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQER 368
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 369 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 403
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 225 (84.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 53/144 (36%), Positives = 86/144 (59%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMN--VVQEVEYVKQEAKIV 271
QRQTL+FSAT P++IQ A L + + VG+ G + ++Q +Y K+E K+V
Sbjct: 476 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKRE-KLV 534
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+L + + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 535 EILRNIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 592
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 593 CPVLVATSVAARGLDIENVQHVIN 616
Score = 70 (29.7 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
ILVE G D PPA +F L ++L + G K TP+Q IP
Sbjct: 276 ILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIP 322
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 225 (84.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 53/144 (36%), Positives = 86/144 (59%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMN--VVQEVEYVKQEAKIV 271
QRQTL+FSAT P++IQ A L + + VG+ G + ++Q +Y K+E K+V
Sbjct: 476 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKRE-KLV 534
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+L + + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 535 EILRNIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 592
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 593 CPVLVATSVAARGLDIENVQHVIN 616
Score = 70 (29.7 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 154 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
ILVE G D PPA +F L ++L + G K TP+Q IP
Sbjct: 276 ILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIP 322
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 247 (92.0 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 55/155 (35%), Positives = 94/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L + + IN+G A ++ + N++Q V+
Sbjct: 258 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIG-ALELSANHNILQIVDVC 316
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 317 HDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQER 376
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 377 DWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 411
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 247 (92.0 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY- 263
+R I R RQTL++SAT PK+++ A L I IN+G A ++ + N++Q V+
Sbjct: 262 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC 320
Query: 264 --VKQEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V+++ K++ L+E + + E ++F E K+ D + + G A+ IHG K Q+ER
Sbjct: 321 HDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQER 380
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G+ +++ATDVAS+GLD E++K VIN
Sbjct: 381 GWVLNEFKHGKAPILIATDVASRGLDVEDVKFVIN 415
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 243 (90.6 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 55/156 (35%), Positives = 93/156 (59%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN-VGRAGKIMPSMNVVQEV 261
+D+ I + ++QTLLFSAT+P I+ + L T+ VGR K +P+ +++V
Sbjct: 162 DDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGRE-KTVPA---IRQV 217
Query: 262 EYVKQEAKIVYLLECLQKTEPPV--LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
Y E + + L + +E P+ ++F K+ VD + E L +G A +HG Q E
Sbjct: 218 YYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRE 277
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
RT++++SF+ G+ +++VATDVA++GLD ++ HVIN
Sbjct: 278 RTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVIN 313
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 243 (90.6 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 55/156 (35%), Positives = 93/156 (59%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN-VGRAGKIMPSMNVVQEV 261
+D+ I + ++QTLLFSAT+P I+ + L T+ VGR K +P+ +++V
Sbjct: 162 DDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGRE-KTVPA---IRQV 217
Query: 262 EYVKQEAKIVYLLECLQKTEPPV--LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
Y E + + L + +E P+ ++F K+ VD + E L +G A +HG Q E
Sbjct: 218 YYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRE 277
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
RT++++SF+ G+ +++VATDVA++GLD ++ HVIN
Sbjct: 278 RTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVIN 313
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 205 (77.2 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 57/165 (34%), Positives = 91/165 (55%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
++++ I + RQT+LFSATM + N R L KP+ + V K + + + QE
Sbjct: 419 ADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTV--VTLTQEF 476
Query: 262 EYVK--QEAK----IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLL--LKGVEAVAIHG 313
++ +E K +VYL + L TE ++ F +KK A H ++ L G+ +HG
Sbjct: 477 VRLRPGREEKRMGYLVYLCKNLY-TERVIIFFRQKKI---AHHARIIFGLLGLSCAELHG 532
Query: 314 GKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
Q +R +SVE+FR G+ ++ATD+AS+GLD + + VIN EA
Sbjct: 533 SMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEA 577
Score = 81 (33.6 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL-SEDV 205
SF+ M L ++R L + G KPTPIQ + IP AL +DV
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDV 295
Score = 49 (22.3 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 1 SSNESDD---EHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEE 57
S NE+D+ E V +KK K I + Q+R +K +DD D+ DEE
Sbjct: 19 SDNEADEFVEEEEVIQEEAPPKKKSKTIP--KKKQKRSSKKAS---NDD-----DAEDEE 68
Query: 58 NDESK-VWGR 66
+ + VWG+
Sbjct: 69 DGHIEGVWGQ 78
Score = 37 (18.1 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 44 SDDEDNNKDSTDEENDES 61
SDDED+ + S ++ E+
Sbjct: 180 SDDEDSAEASEGQDGSEA 197
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 241 (89.9 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 53/142 (37%), Positives = 85/142 (59%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLL 274
R T+LFSATMP ++ ++ L +P TI +G AGK++ + Q V +VK E K +L
Sbjct: 616 RTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIR--QTVIFVKSENDKKEHLT 673
Query: 275 ECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333
+ ++ PP++IF KK+ D I L V +H G+ QE+R ++E F+K + +
Sbjct: 674 QLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYE 733
Query: 334 VMVATDVASKGLDFEEIKHVIN 355
V++AT VAS+G+ + + HVIN
Sbjct: 734 VLIATGVASRGIHVDGVTHVIN 755
Score = 45 (20.9 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEENDESKVWGR 66
EE+KK D D+ +DS D + D GR
Sbjct: 73 EEQKK-ERDDHRDDYRDSRDRDRDYRDNGGR 102
Score = 39 (18.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 44 SDDEDNNKDSTDEENDESKVWGRMSNISLLDQH 76
+++ +NN ++ + N+ S + G+ + L D H
Sbjct: 347 NNNNNNNNNNINNNNNGSMIGGKQIS-ELPDTH 378
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 221 (82.9 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 47/145 (32%), Positives = 80/145 (55%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
R RQT++ SAT P I+ A S L +P+ + VG + V Q + +E K
Sbjct: 391 RPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVD-TVKQNIIITTEEEKRSL 449
Query: 273 LLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
E LQ P V++F +K D + L ++G+ ++HG ++Q +R R+++ F+ G
Sbjct: 450 FQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTG 509
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ +++ATD+AS+GLD ++ HV N
Sbjct: 510 KVKILIATDLASRGLDVSDVTHVFN 534
Score = 68 (29.0 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 126 PIKTSWRAPRCILSLPDQVH-DIIRR-NLRI----LVEGDD--VPPACCSFR--LMKLPE 175
PI ++ S QV DI R+ N + L +G+ +P C F PE
Sbjct: 166 PIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPE 225
Query: 176 SLVRALEAKGIKKPTPIQVQGIPAAL 201
L+++++ G +KPTPIQ Q P L
Sbjct: 226 -LMKSIKKAGFQKPTPIQSQAWPIVL 250
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 212 (79.7 bits), Expect = 8.7e-19, Sum P(2) = 8.7e-19
Identities = 52/143 (36%), Positives = 83/143 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
+RQTL+FSAT P++I+ A + L + + VG G +V Q V +++ K+ L
Sbjct: 460 KRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACS--DVAQTVLEMRENGKMEKL 517
Query: 274 LECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
LE L+ +E +IF K+ D I YL + + +IHG ++Q +R ++ FR G+
Sbjct: 518 LEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKC 577
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
V+V T VA++GLD E ++HVIN
Sbjct: 578 TVIVCTAVAARGLDIENVQHVIN 600
Score = 81 (33.6 bits), Expect = 8.7e-19, Sum P(2) = 8.7e-19
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 156 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
V G DVPPA +F L E+L R + G K TP+Q IP ++
Sbjct: 264 VTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMA 310
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 221 (82.9 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 47/145 (32%), Positives = 80/145 (55%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
R RQT++ SAT P I+ A S L +P+ + VG + V Q + +E K
Sbjct: 400 RPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVD-TVKQNIIITTEEEKRSL 458
Query: 273 LLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
E LQ P V++F +K D + L ++G+ ++HG ++Q +R R+++ F+ G
Sbjct: 459 FQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTG 518
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ +++ATD+AS+GLD ++ HV N
Sbjct: 519 KVKILIATDLASRGLDVSDVTHVFN 543
Score = 68 (29.0 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 126 PIKTSWRAPRCILSLPDQVH-DIIRR-NLRI----LVEGDD--VPPACCSFR--LMKLPE 175
PI ++ S QV DI R+ N + L +G+ +P C F PE
Sbjct: 175 PIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPE 234
Query: 176 SLVRALEAKGIKKPTPIQVQGIPAAL 201
L+++++ G +KPTPIQ Q P L
Sbjct: 235 -LMKSIKKAGFQKPTPIQSQAWPIVL 259
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 244 (91.0 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 55/153 (35%), Positives = 86/153 (56%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I +RQTL+++AT PK ++ A LV P +N+G +++ + ++ Q +E V
Sbjct: 325 IRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVV 384
Query: 265 KQEAKIVYLLECLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
K L + L+ EP V+IF K+ D + L + A AIHG K Q ER
Sbjct: 385 APMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDN 443
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ FR G+ V+VATDVA++GLD ++I+ V+N
Sbjct: 444 VLNQFRSGRTPVLVATDVAARGLDVKDIRAVVN 476
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 224 (83.9 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 50/146 (34%), Positives = 86/146 (58%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVV-QEVEYVKQEAKIV 271
R RQT++ SAT P ++ A+S L P+ + VG + ++N V Q+V + +E K
Sbjct: 415 RPDRQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLD--LAAVNTVEQKVIVINEEEKKA 472
Query: 272 YLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329
++ + +P +IF KK D I L ++GV ++HG ++Q +R ++++ F+K
Sbjct: 473 FMENFIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKK 532
Query: 330 GQKDVMVATDVASKGLDFEEIKHVIN 355
G+ ++VATD+AS+GLD +I HV N
Sbjct: 533 GKVRILVATDLASRGLDVHDITHVFN 558
Score = 64 (27.6 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 123 YNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD--VPPACCSFR--LMKLPESLV 178
Y + +T+ +P + + ++II +L+ EG+ +P C F + P+ +
Sbjct: 197 YKESSRTACMSPEEVELWRKENNNIICDDLK---EGEKRCIPNPVCKFEDVFEQYPDIMA 253
Query: 179 RALEAKGIKKPTPIQVQGIPAAL 201
+ G +KPTPIQ Q P L
Sbjct: 254 N-IRKTGFQKPTPIQSQAWPIIL 275
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 211 (79.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 45/146 (30%), Positives = 84/146 (57%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVV-QEVEYVKQEAKIV 271
R RQT++ +A+ P + A+S L +P+ + VG + ++N V Q + +E K
Sbjct: 377 RPDRQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLV--TVNTVKQNIIVTTEEEKRS 434
Query: 272 YLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRK 329
+ E LQ P V++F +K D + L ++G+ ++HG ++Q +R +++E FR
Sbjct: 435 LVKEFLQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRT 494
Query: 330 GQKDVMVATDVASKGLDFEEIKHVIN 355
G+ +++ATD+A++GLD ++ HV N
Sbjct: 495 GRVKILIATDLAARGLDVSDVTHVYN 520
Score = 79 (32.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 113 GVAELAKGIQYND--PIKTS-WRAPRCILSLPDQVHDIIRR---NLRI--LVEGDD--VP 162
GV E K ++ D PIK + + + SL + +I R+ N+R L EG+ +P
Sbjct: 138 GVVEWKKR-KWADLPPIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLTEGEKRPIP 196
Query: 163 PACCSFR--LMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
C+F + PE +++++ G +KPTPIQ Q P L
Sbjct: 197 KPTCTFEDAFQQYPE-IMQSIRRAGFQKPTPIQSQSWPIIL 236
>UNIPROTKB|I3LRT7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000031627 OMA:VGDERTM Uniprot:I3LRT7
Length = 290
Score = 225 (84.3 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 53/144 (36%), Positives = 86/144 (59%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMN--VVQEVEYVKQEAKIV 271
QRQTL+FSAT P++IQ A L + + VG+ G + ++Q +Y K+E K+V
Sbjct: 41 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKRE-KLV 99
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+L + + ++F E K+ D I +L + + +IHG ++Q ER +++ FR G+
Sbjct: 100 EILRNIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 157
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E ++HVIN
Sbjct: 158 CPVLVATSVAARGLDIENVQHVIN 181
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 218 (81.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 51/153 (33%), Positives = 84/153 (54%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
D+ + + + QTL+FSAT ++++ A L P TI+V + S + Q V +
Sbjct: 185 DIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTT--SGKIKQAVYW 242
Query: 264 VKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
V +E K L E + VL+FA K+ + + + L L G++A HG K Q R +
Sbjct: 243 VTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNK 302
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++E F +G+ V+VATDVA++GLD ++ V+N
Sbjct: 303 ALEQFSEGKVRVLVATDVAARGLDIPDLAFVVN 335
Score = 64 (27.6 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 173 LPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFS 222
L L++A++A G K TPIQ + IP + + V + S G +T FS
Sbjct: 8 LSADLLKAVKACGYKNLTPIQQEAIPV-IRQGVDLLASAQTGTGKTAAFS 56
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 214 (80.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 45/153 (29%), Positives = 87/153 (56%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNV-VQEVE 262
D++ I + +RQ L+FSAT +I+ A+ + P+ I+V ++ + V+
Sbjct: 167 DIKKILALLPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVD 226
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++ A ++ L++ Q+ VL+F+ K + + + L+ + A AIHG K Q RT+
Sbjct: 227 KTQKSALLIQLIK--QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTK 284
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ F+ G+ V+VATD+A++GLD +++ V+N
Sbjct: 285 ALADFKSGEVRVLVATDIAARGLDIDQLPQVVN 317
Score = 72 (30.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
SF + L L +A+ +G P+PIQ Q IPA L+ +DV
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDV 41
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 244 (91.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 75/255 (29%), Positives = 130/255 (50%)
Query: 114 VAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACC------S 167
V + G + + + I++ P ++ D I R + +L + CC +
Sbjct: 455 VVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQ-------CCYVIMDEA 507
Query: 168 FRLMKL--PESLVRALEAKGI--KKPTPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSA 223
R++ L E + + L+A + +KP + + +A+S R + S R RQT++++A
Sbjct: 508 DRMIDLGFEEPVNKILDALPVTNEKPDTEEAED-SSAMS---RHLGSKDR-YRQTMMYTA 562
Query: 224 TMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL-ECLQKTE- 281
TMP ++ AR L +P + +G AG+ + + V Q VE + E K L E L +
Sbjct: 563 TMPTAVERIARKYLRRPAIVTIGSAGEAVDT--VEQRVEMIAGEDKRKKRLGEILSSGDF 620
Query: 282 -PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVATDV 340
PP+++F K++ DAI + G +V +HG K QE+R ++ S R G DV+VATD+
Sbjct: 621 RPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDL 680
Query: 341 ASKGLDFEEIKHVIN 355
A +G+D ++ VIN
Sbjct: 681 AGRGIDVPDVSLVIN 695
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 212 (79.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 51/144 (35%), Positives = 82/144 (56%)
Query: 215 QRQTLLFSATMPK-KIQNFARSALVKP--ITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271
+RQTLLFSAT+ ++ FA L KP I IN G + + + ++EA +
Sbjct: 179 KRQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQ 238
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+ L +K++ ++IF + D D + + L + + AVA+ G +Q +R + +ESF KGQ
Sbjct: 239 HFL-VTEKSQQ-IIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQ 296
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
++V TD+AS+GLD + HVIN
Sbjct: 297 HKILVTTDLASRGLDLINVSHVIN 320
Score = 70 (29.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 173 LPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLF 221
L +L+ +E G +PT IQ Q IPAA++ D+ I S G +TL F
Sbjct: 8 LDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDL--IASSKTGSGKTLAF 55
Score = 44 (20.5 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 120 GIQYNDPIKTSWRAPRCILSLPDQVHD 146
G +ND +K + P I++ P ++ D
Sbjct: 110 GENFNDQVKVLQKEPEFIVATPGRLAD 136
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 212 (79.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 51/144 (35%), Positives = 82/144 (56%)
Query: 215 QRQTLLFSATMPK-KIQNFARSALVKP--ITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271
+RQTLLFSAT+ ++ FA L KP I IN G + + + ++EA +
Sbjct: 179 KRQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQ 238
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+ L +K++ ++IF + D D + + L + + AVA+ G +Q +R + +ESF KGQ
Sbjct: 239 HFL-VTEKSQQ-IIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQ 296
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
++V TD+AS+GLD + HVIN
Sbjct: 297 HKILVTTDLASRGLDLINVSHVIN 320
Score = 70 (29.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 173 LPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQTLLF 221
L +L+ +E G +PT IQ Q IPAA++ D+ I S G +TL F
Sbjct: 8 LDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDL--IASSKTGSGKTLAF 55
Score = 44 (20.5 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 120 GIQYNDPIKTSWRAPRCILSLPDQVHD 146
G +ND +K + P I++ P ++ D
Sbjct: 110 GENFNDQVKVLQKEPEFIVATPGRLAD 136
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 229 (85.7 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 52/153 (33%), Positives = 89/153 (58%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P+ ++ AR L KP+ + VG G+ + +V Q V +
Sbjct: 528 VMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVG--GRSVVCSDVEQHVIVI 585
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++E K + LLE L + + V+IF +K++ D + + L+ +++HGG DQ +R
Sbjct: 586 EEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDS 645
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F+ G ++VAT VA++GLD +++ V+N
Sbjct: 646 IINDFKNGACRLLVATSVAARGLDVKQLILVVN 678
Score = 59 (25.8 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 17 KERKKQKLIQLGRLAQERHEEK--KKLVLSDDEDNNKDS 53
+E++K+ + +G + +E E K KK L DD+D+++++
Sbjct: 140 EEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDDEEA 178
Score = 41 (19.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 23 KLIQLGRLAQERHEEKKK-LVLSDDEDNNKDSTDEE 57
K++ + + + H KKK ++ +D+D + S++EE
Sbjct: 249 KVVTVVKTKKMPHATKKKGELMENDQDAMEYSSEEE 284
Score = 41 (19.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNK-DSTDEENDESKV 63
+ERK+Q+ R E ++ S K ++ D+ D+ K+
Sbjct: 58 RERKRQRRSSRDRRRSRSRERRRSKSRSRGRSKEKPENGDQTADKKKI 105
Score = 38 (18.4 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 29 RLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
++ +E+ EEK +D+D ++++ +EE + K
Sbjct: 104 KIKEEKEEEKP-----EDQDFDQNTLEEEMRKRK 132
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 202 (76.2 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 47/145 (32%), Positives = 82/145 (56%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNV----VQEVEYVKQEAKI 270
+RQT+LFSATM ++++ + +L KP+ ++ + + P + ++ QEA +
Sbjct: 344 RRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVL 403
Query: 271 VYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
+ L C + + V+IF+ KQ + L G++A +HG Q +R S+E FRK
Sbjct: 404 LSL--CTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQ 461
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ D ++ATDVA++GLD ++ VIN
Sbjct: 462 EVDFLIATDVAARGLDIIGVQTVIN 486
Score = 81 (33.6 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
+F + L L+RA E G KKPTPIQ IP AL+
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALT 203
Score = 45 (20.9 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 5 SDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
SDDE + + +E ++ ++ G E HE +DED ++ +E++DE +
Sbjct: 11 SDDE--LELIRNQEDSSEEDVKEGEA--EEHEA------GEDEDGEEEYEEEDDDEEE 58
Score = 45 (20.9 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 2 SNESDDEHYVPYVSVKERKKQKLIQLG----RLAQERHEEKKKLVLSDDEDNNKDSTDEE 57
S+ +EH + + + K K IQ + +E EE+++ SD E + ++ E
Sbjct: 79 SSSVGEEHARRHTTSIDEKISKAIQHRPVPISINEEEEEEEEEEDASDAETDKQEEYLSE 138
Query: 58 NDES 61
+DE+
Sbjct: 139 DDEA 142
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 241 (89.9 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 52/141 (36%), Positives = 80/141 (56%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLE 275
R T +FSATMP ++ AR L P+ + +G AGK ++ Q V +K+ K L +
Sbjct: 512 RTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLIS--QHVIMMKESEKFFRLQK 569
Query: 276 CLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV 334
L + E ++F K++ D+I + L G +HGGK QE+R S+E FR + +V
Sbjct: 570 LLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNV 629
Query: 335 MVATDVASKGLDFEEIKHVIN 355
+VATDV +G+D ++ HVIN
Sbjct: 630 LVATDVVGRGIDIPDVAHVIN 650
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 210 (79.0 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 52/159 (32%), Positives = 92/159 (57%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
+E ++ I + RQT+LFSATM +++++ A +L KPI + V ++ + N+ QE
Sbjct: 322 AEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQV--AFNLRQEF 379
Query: 262 EYVKQEAK-----IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
++++ + I+ L C + ++F + K+ +H L L GV A +HG
Sbjct: 380 IRIREDKEGDREPILASLIC-RTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLT 438
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q++R S++ F++ Q DV++ATDVA++GLD +K VIN
Sbjct: 439 QQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVIN 477
Score = 70 (29.7 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
SF M L L+RA+ G PTPIQ IP AL
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVAL 192
Score = 42 (19.8 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 5 SDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDST 54
S+DE + ++E+K+ K + ++ +E +K+ +D + N+ T
Sbjct: 108 SEDELKHDNLRLREKKESKKKKKKAGEEDEEDEGEKMQFADTVEANEQIT 157
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 235 (87.8 bits), Expect = 9.2e-18, P = 9.2e-18
Identities = 51/152 (33%), Positives = 88/152 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R I +RQTL FSATMPK +++ A + L P ++V A + + Q V +V
Sbjct: 175 LRAIAKNVPSKRQTLFFSATMPKAVESLAATFLRNPAEVSV--APPATTAGRIEQRVCFV 232
Query: 265 KQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRS 323
+Q K L+E ++ E ++F K D + + L +++VAIHG K Q +R ++
Sbjct: 233 EQPEKASLLIEKIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKA 292
Query: 324 VESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+E+F+ G+ ++VATD+A++G+ + + HVIN
Sbjct: 293 LEAFKAGRVPILVATDIAARGIHVDALTHVIN 324
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 225 (84.3 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 53/161 (32%), Positives = 92/161 (57%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
++++ I + RQT+LFSATM + R L +P+ + V K ++ +VQE
Sbjct: 462 ADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDT--KKNTAVTLVQEF 519
Query: 262 EYVK---QEAKIVYLLE-CLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ 317
++ ++ ++ YLL C + V++F +K++ + L G++A +HG Q
Sbjct: 520 VRLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQ 579
Query: 318 EERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
E+R +SVESFR G + ++ATD+AS+GLD + ++ VIN EA
Sbjct: 580 EQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEA 620
Score = 54 (24.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
K+ +K + + + + R E+++K + + + D ++E DE +
Sbjct: 132 KKNGNKKAVDIDDIIERRREKREKKAEKEKKKKHLDECEDEKDEDE 177
Score = 48 (22.0 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 32 QERHEEKKKLVLSDDEDNNKDSTDEENDE 60
+E EE+++ +DE +++D + E+D+
Sbjct: 209 EEEEEEEEEETEGNDESDDEDEEEGEDDD 237
Score = 46 (21.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 33 ERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
E EE+++ ++ + N +S DE+ +E +
Sbjct: 205 EEEEEEEEEEEEEETEGNDESDDEDEEEGE 234
Score = 44 (20.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 32 QERHEEKKKLVLSDDEDNNKDSTDEENDE 60
+E EE+++ +D+ D+ + E++D+
Sbjct: 210 EEEEEEEEETEGNDESDDEDEEEGEDDDD 238
Score = 44 (20.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 32 QERHEEKKKLVLSDDEDNNKDSTDEENDES 61
+E EE + SDDED + D+++ S
Sbjct: 213 EEEEEETEGNDESDDEDEEEGEDDDDDAAS 242
Score = 44 (20.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 27 LGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE 60
+G + EE+++ ++E D +D+E++E
Sbjct: 198 MGADGVDEEEEEEEEEEEEEETEGNDESDDEDEE 231
Score = 43 (20.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDE----DN---NKDSTDEENDESK 62
KE+KK+ L + E ++ + DDE D D DEE +E +
Sbjct: 159 KEKKKKHLDECEDEKDEDEDDAMSVDFGDDELLAKDGFGMGADGVDEEEEEEE 211
Score = 42 (19.8 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 41 LVLSDDEDNNKDSTDEENDES 61
L LSDDE++ D +E+ S
Sbjct: 18 LTLSDDENDRFDEPQDEDATS 38
Score = 38 (18.4 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 17 KERKKQK--LIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEN 58
K+ K+Q+ Q G+ ++ EK+ SDDE+ + E++
Sbjct: 58 KKMKQQQHGKQQKGKKGKQASMEKE--ARSDDEEEEEQDAGEDD 99
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 169 (64.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 45/167 (26%), Positives = 88/167 (52%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE-V 261
+ V IF Q Q LLFSAT+ ++++ S + I +++G K ++N + V
Sbjct: 279 DQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWV 337
Query: 262 EYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYL-LLKGVEAVAIHGGKDQEER 320
+ +++ K+ +L +PP +++ + D + + ++ GV+A++IHG K +ER
Sbjct: 338 DAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKER 397
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVI--NTEAKIKKREH 365
+ SF G+ V+V+T V +G+D ++ VI + + IK+ H
Sbjct: 398 RDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 444
Score = 114 (45.2 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 145 HD--IIRRNLRILVEGDD--VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 200
HD ++RR L I V+G VPP +F LP L+ LE G PTPIQ+Q IPAA
Sbjct: 85 HDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAA 144
Query: 201 LS 202
L+
Sbjct: 145 LT 146
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 216 (81.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 52/165 (31%), Positives = 91/165 (55%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
+ V I +R T+LFSAT+P+ ++ +R+ + P I + AG + + + +
Sbjct: 165 DQVEAIIDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAG--ITTDKIEHTLF 222
Query: 263 YVKQEAKIVYLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V++E K+ LL+ + E P +IF +++VD ++ L IHGG QE+R
Sbjct: 223 EVREEEKLS-LLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDR 281
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
++ FRKG+ +VATDVA++G+D + I HVIN + ++K +
Sbjct: 282 FGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESY 326
Score = 56 (24.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSE 203
SF L + + RAL G + PT +Q + IP AL +
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQK 41
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 216 (81.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 52/165 (31%), Positives = 91/165 (55%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
+ V I +R T+LFSAT+P+ ++ +R+ + P I + AG + + + +
Sbjct: 165 DQVEAIIDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAG--ITTDKIEHTLF 222
Query: 263 YVKQEAKIVYLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V++E K+ LL+ + E P +IF +++VD ++ L IHGG QE+R
Sbjct: 223 EVREEEKLS-LLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDR 281
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
++ FRKG+ +VATDVA++G+D + I HVIN + ++K +
Sbjct: 282 FGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESY 326
Score = 56 (24.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSE 203
SF L + + RAL G + PT +Q + IP AL +
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQK 41
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 210 (79.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 44/145 (30%), Positives = 82/145 (56%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
R RQT++ SAT P ++ A+S L +P+ + VG + S V Q + ++ K +
Sbjct: 417 RPDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVS-TVTQNIIVTTEDEKRSH 475
Query: 273 LLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
+ + P V+IF +K D + L ++ + ++HG ++Q +R R+++SF+ G
Sbjct: 476 IQAFIDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTG 535
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ +++ATD+AS+GLD ++ HV N
Sbjct: 536 KVRILIATDLASRGLDVHDVTHVYN 560
Score = 68 (29.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 109 KALMGVAELAKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSF 168
K G+ + K Y + KTS + + + + ++II +L+ E +P C+F
Sbjct: 185 KKWAGLPPVKKNF-YIESEKTSSMSQEQVDNWRKENYNIICDDLKD-GEKRPLPNPTCNF 242
Query: 169 R--LMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
PE ++R +E G +KPTPIQ Q P L
Sbjct: 243 EDAFHCYPE-VMRNIEKAGFQKPTPIQSQAWPIIL 276
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 234 (87.4 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 55/144 (38%), Positives = 84/144 (58%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
+R T +FSAT PK+IQ A+ L + + + VGR G S N++Q++ +V+++ K YL
Sbjct: 425 ERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGST--SENIMQKIVWVEEDEKRSYL 482
Query: 274 LECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
++ L T L+F E K+ + YL + E V IHG Q ER + ++ FR G
Sbjct: 483 MDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGT 542
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
++VAT VA++GLD +KHVIN
Sbjct: 543 APILVATAVAARGLDIPNVKHVIN 566
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 215 (80.7 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 45/145 (31%), Positives = 83/145 (57%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
R RQT++ SAT P + A+S L +P+ + VG + S +V Q + +E K +
Sbjct: 418 RPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVS-SVKQNIIVTTEEEKWSH 476
Query: 273 LLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
+ LQ + V++F +K D + L+L + ++HG ++Q +R +++E+F+ G
Sbjct: 477 MQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTG 536
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ +++ATD+AS+GLD ++ HV N
Sbjct: 537 KVRILIATDLASRGLDVHDVTHVYN 561
Score = 60 (26.2 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 VPPACCSF--RLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+P C+F PE ++ ++ G +KPTPIQ Q P L
Sbjct: 236 IPNPTCTFDDAFQCYPE-VMENIKKAGFQKPTPIQSQAWPIVL 277
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 231 (86.4 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 54/155 (34%), Positives = 87/155 (56%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
++ I R RQTL+FSAT PK+++ A +NVG ++ + N+ Q V+ +
Sbjct: 297 IKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSL-ELAANHNITQVVDIL 355
Query: 265 KQEAKIVYLLECLQ----KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
++ AK L+E L + E +IF E K+ D + + G + IHG K+Q ER
Sbjct: 356 EEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGER 415
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ F+ G+ +M+ATDVA++GLD ++IK VIN
Sbjct: 416 DWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVIN 450
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 229 (85.7 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 56/154 (36%), Positives = 81/154 (52%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I S +RQTLLFSATMP I+ A + +P + V K M N+ Q
Sbjct: 163 EDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V ++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRL 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +++VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGAIEILVATDVAARGLDISGVTHVYN 314
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 198 (74.8 bits), Expect = 7.0e-17, Sum P(3) = 7.0e-17
Identities = 51/157 (32%), Positives = 84/157 (53%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
E ++ I RQT+LFSATM +++++ A +L P I V + P + QE
Sbjct: 346 EQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLR--QEFI 403
Query: 263 YVK--QEAKIVYLLECL-QKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQE 318
++ +E ++ L +T P V++F + K+ +H L L G+ +HG Q
Sbjct: 404 RIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQA 463
Query: 319 ERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+R ++ F+ Q D++VATDVA++GLD E +K VIN
Sbjct: 464 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVIN 500
Score = 78 (32.5 bits), Expect = 7.0e-17, Sum P(3) = 7.0e-17
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL-SEDV 205
SF+ M L L++A+ A G K+PTPIQ IP L +D+
Sbjct: 181 SFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDI 220
Score = 39 (18.8 bits), Expect = 7.0e-17, Sum P(3) = 7.0e-17
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 26 QLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEND--ESKVWGR 66
++ ++ Q+R ++K+ + +D N ++ D +++ E + +GR
Sbjct: 84 KIEKVRQKRKFQEKEAKQAKVKDGNAETEDNQSEKRECEDFGR 126
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 229 (85.7 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 49/153 (32%), Positives = 86/153 (56%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+ I R RQT++FSAT P K++N A+ L KP+ I G G+ + S ++ Q VE
Sbjct: 680 INCIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAG--GRSIVSSDIEQFVEVR 737
Query: 265 KQEAKIVYLLECLQ--KTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
E + L+E L + +LIF +++ D ++ L + +++HG KDQ +R
Sbjct: 738 PTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDE 797
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ F+ K +++AT +AS+GLD +++ V+N
Sbjct: 798 TISDFKNKVKTILIATPLASRGLDIKDLNLVVN 830
Score = 46 (21.3 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 14 VSVKERKKQKLIQLGRLAQERHEEKK 39
+ ++ +Q I+ RL QER EKK
Sbjct: 235 IQFQQTPQQLAIEQERLKQERENEKK 260
Score = 40 (19.1 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 1 SSNESDD-EHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDST 54
S E DD + Y+ ++ ++ + +Q +++K S+ ED+ KD T
Sbjct: 394 SIEEDDDIDPLDAYMENLNKEANLNLKKSKTSQMIDDDEKLEEESEGEDDGKDKT 448
Score = 39 (18.8 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKL 41
+ER+ +K I+ L +E + ++K+
Sbjct: 253 QERENEKKIEQANLEEEMKKRREKV 277
Score = 37 (18.1 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 36 EEKKKLVLSDDEDNNKDSTDEENDESK 62
+ K ++ DDE ++S E++ + K
Sbjct: 421 KSKTSQMIDDDEKLEEESEGEDDGKDK 447
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 208 (78.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 47/156 (30%), Positives = 85/156 (54%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN-VVQEV 261
E++ I + +QTLLFSAT I +++ LV+P + + K + +V V
Sbjct: 169 EEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV 228
Query: 262 EYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+ ++ +L+ + VL+F KQ D + + + GV+++AIHG K Q R
Sbjct: 229 DADRKRELTSFLIG--SRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGARE 286
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
+++ F++G+ ++ATDVA++G+D + + HVIN E
Sbjct: 287 KALHEFKEGKVRALIATDVAARGIDIKGLSHVINYE 322
Score = 57 (25.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSE-DV 205
+F L +L++A+ +PT IQ Q IP L++ DV
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDV 45
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 208 (78.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 47/156 (30%), Positives = 85/156 (54%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN-VVQEV 261
E++ I + +QTLLFSAT I +++ LV+P + + K + +V V
Sbjct: 169 EEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV 228
Query: 262 EYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
+ ++ +L+ + VL+F KQ D + + + GV+++AIHG K Q R
Sbjct: 229 DADRKRELTSFLIG--SRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGARE 286
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
+++ F++G+ ++ATDVA++G+D + + HVIN E
Sbjct: 287 KALHEFKEGKVRALIATDVAARGIDIKGLSHVINYE 322
Score = 57 (25.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSE-DV 205
+F L +L++A+ +PT IQ Q IP L++ DV
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDV 45
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 229 (85.7 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 57/143 (39%), Positives = 85/143 (59%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274
R T +FSAT PK+IQ A+ L I + VGR G S N+ Q + +V + K L+
Sbjct: 332 RTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGST--SENIEQRLLWVNEMEKRSNLM 389
Query: 275 ECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
E L + +E VL+F E K+ + + +L + + +V+IHG Q ER R++E FR GQ
Sbjct: 390 EILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQC 449
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
++VAT VA++GLD ++HVIN
Sbjct: 450 PILVATAVAARGLDIPNVRHVIN 472
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 225 (84.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSM-NVVQEVE 262
D+R I RQ LLFSAT K+I+ L P I V R + +VV V+
Sbjct: 180 DIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVD 239
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++ + +++ K VL+F K + + + L G+ + AIHG K Q R R
Sbjct: 240 RQRKRELLSFMIG--SKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMR 297
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
++ F++G+ V+VATDVA++GLD +++ HVIN E
Sbjct: 298 ALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFE 332
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 225 (84.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSM-NVVQEVE 262
D+R I RQ LLFSAT K+I+ L P I V R + +VV V+
Sbjct: 180 DIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVD 239
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++ + +++ K VL+F K + + + L G+ + AIHG K Q R R
Sbjct: 240 RQRKRELLSFMIG--SKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMR 297
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTE 357
++ F++G+ V+VATDVA++GLD +++ HVIN E
Sbjct: 298 ALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFE 332
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 226 (84.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 54/154 (35%), Positives = 86/154 (55%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+ + + R +QT+LFSAT P+ ++ AR L KP+ I VG GK + ++ Q
Sbjct: 475 IMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVG--GKSVVCSDITQNAVIC 532
Query: 265 KQEAKIVYLLECLQK--TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVA-IHGGKDQEERT 321
+ K + LLE L E ++F +K++ D I + L+ G +VA +HGG DQ +R
Sbjct: 533 AEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRD 592
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
S+ F+ G V+VAT VA++GLD + + V+N
Sbjct: 593 SSIADFKTGVIKVLVATSVAARGLDVKNLILVVN 626
Score = 46 (21.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 18 ERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEEND 59
++KK++L + E+ EKK L D++D +D D +N+
Sbjct: 115 QKKKEELDLQSEQSDEK-SEKKPWNLEDEDD--EDEFDIKNE 153
Score = 45 (20.9 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 16 VKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVW 64
V + K+ +L+Q G + R+ EK + +E + + +E E K W
Sbjct: 90 VMKMKEAELLQ-GVERRRRNVEKWRAQKKKEELDLQSEQSDEKSEKKPW 137
Score = 41 (19.5 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 18 ERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDE 56
+R+K + + R A+++ E++ K + + E++ D T+E
Sbjct: 52 DREKTRDREKQRDAEKKKEKESKTAIFEMEESRND-TEE 89
Score = 41 (19.5 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 4 ESDDEH-----YVPYVSVKERKK-----QKLIQLGRLAQERHEEKKKLVLSDDEDN 49
++DDE ++ ++ K KK QK + + QE E +K + ++EDN
Sbjct: 171 DTDDEEDPLDAFMKEIATKNAKKTGNSTQKASGIVTIVQEEKPEPEKGQVLENEDN 226
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 188 (71.2 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 47/158 (29%), Positives = 84/158 (53%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
+++ I RQT+LFSAT+ +++ A+ +L +PI + V ++ ++ QE
Sbjct: 355 DEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLE--QEFV 412
Query: 263 YVK----QEAKIVYLLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ 317
+K + + L C + + +IF K++V + L ++A +HG Q
Sbjct: 413 KIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQ 472
Query: 318 EERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
E+R S++ FR GQ + ++A+DVAS+GLD +K VIN
Sbjct: 473 EQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVIN 510
Score = 83 (34.3 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 150 RNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTI 208
R L+ +VE +++P +F + L L++A++ G +PTPIQ + IP AL+ +D+ +
Sbjct: 179 RKLKKIVE-EELP----TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDI--L 231
Query: 209 FSFFRGQRQTLLF 221
S G +T F
Sbjct: 232 ASASTGSGKTAAF 244
Score = 44 (20.5 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 45 DDEDNNKDSTDEENDESKV-WGRMSNISLLDQHS 77
DDED +D EE+D+ ++ W I + Q +
Sbjct: 45 DDEDLKEDFFFEESDKPQLPWDFAPTIEKMKQQT 78
Score = 43 (20.2 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 45 DDEDNNKDSTDEENDE 60
DDE+ N++ +EE +E
Sbjct: 130 DDEEVNEEEEEEEEEE 145
Score = 43 (20.2 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 35 HEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ + KK +D++D++++ +EE +E +
Sbjct: 116 NNKSKKSNNNDNDDDDEEVNEEEEEEEE 143
Score = 40 (19.1 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 35 HEEKKKLVLSDDEDNNKDSTDEENDESK 62
+ K K ++D D++ + +EE +E +
Sbjct: 115 NNNKSKKSNNNDNDDDDEEVNEEEEEEE 142
Score = 37 (18.1 bits), Expect = 7.5e-16, Sum P(3) = 7.5e-16
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 35 HEEKKKLVLSDDEDNNKDSTDEENDESK 62
++ KK +D+D+ + + +EE +E +
Sbjct: 117 NKSKKSNNNDNDDDDEEVNEEEEEEEEE 144
Score = 37 (18.1 bits), Expect = 7.5e-16, Sum P(3) = 7.5e-16
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 1 SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDE 56
+ N+ DDE V+ +E ++++ E +E K + +NK +TD+
Sbjct: 125 NDNDDDDEE----VNEEEEEEEE-----EEDNENEKEINKKQQQQQQQSNKQTTDK 171
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 191 (72.3 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 46/152 (30%), Positives = 78/152 (51%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274
+R T LFSATM KI R++L P+ V + K +VQ + V K YL+
Sbjct: 256 ERTTYLFSATMTSKIDKLQRASLTNPVKCAV--SNKYQTVDTLVQTLMVVPGGLKNTYLI 313
Query: 275 ECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333
L + ++IF K + + + L A A+HG +Q +R S++ F+ G++
Sbjct: 314 YLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRS 373
Query: 334 VMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
++VATDVA++GLD + V+N + + + +
Sbjct: 374 ILVATDVAARGLDIPSVDIVVNYDIPVDSKSY 405
Score = 66 (28.3 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
SF + L L++A + KPTPIQ + IP AL
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPAL 116
Score = 46 (21.3 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 16 VKERKKQKLIQLGRLAQERH----EEKKKLVLSDDEDNNKDSTDEENDESK 62
VK ++K+ +L LA++ E +KKL+ ++ E ++ ++E+ K
Sbjct: 5 VKRKEKKANDELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEK 55
Score = 42 (19.8 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 110 ALMGVAE--LAKGIQYNDPIKTSWRAPRCILSLPDQVHD 146
+LMGV + G+ D + R P I++ P ++ D
Sbjct: 174 SLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMD 212
Score = 38 (18.4 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 37 EKKKLVLSDDEDNNKDSTDEEN-DESKVWGRMSNISLLDQ 75
EKKK++ S + + ST EN +E + + S ++L+ +
Sbjct: 54 EKKKVLKS--KSKSTVSTQNENTNEDESFESFSELNLVPE 91
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 211 (79.3 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
E ++ I QRQT+LFSATM +++++ A +L +P+ I V + P + QE
Sbjct: 366 EQMKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLR--QEFV 423
Query: 263 YV---KQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQE 318
+ K+ + + L +T + V++F + K+ +H L L G++ +HG Q
Sbjct: 424 RIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQT 483
Query: 319 ERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+R S+ F+ Q D++VATDVA++GLD E +K VIN
Sbjct: 484 QRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVIN 520
Score = 60 (26.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 15 SVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVWG 65
S KE KK + + + EE+++ DDE+ +D+ ++ND +V G
Sbjct: 99 SQKENKKTETSASKKHDDQEEEEEEE---EDDEEEEEDNDADDNDADEVSG 146
Score = 52 (23.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDE 60
K RKK+K+ + + ++ E D E+ ++ D+E +E
Sbjct: 88 KVRKKRKVEEKSQKENKKTETSASKKHDDQEEEEEEEEDDEEEE 131
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 223 (83.6 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 51/155 (32%), Positives = 85/155 (54%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
+E++ + + ++QTLLFSAT P+++ + L PI I + A + +VQ V
Sbjct: 179 TEELTALLALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQSAD----ASTLVQRV 234
Query: 262 EYVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V + K L +Q+ + LIF K + + E L +G+ A HG K Q ER
Sbjct: 235 FTVNKGEKTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSER 294
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+R ++ F+ G +V++ATD+A++GLD E++ VIN
Sbjct: 295 SRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVIN 329
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 213 (80.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 50/145 (34%), Positives = 83/145 (57%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271
+ +RQTL+FSAT P+++Q A L I + +G +V Q + V + +K
Sbjct: 351 KDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT--CGACSDVQQNILQVPRLSKRD 408
Query: 272 YLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
L+E LQ T ++F + K+ D + +L + + + +IHG ++Q ER ++ FR G
Sbjct: 409 KLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSG 468
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VAS+GLD E ++HVIN
Sbjct: 469 KCQILVATSVASRGLDIENVQHVIN 493
Score = 52 (23.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 156 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
+ G D P +F ++L + + G K TP+Q IP
Sbjct: 157 MSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIP 199
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 227 (85.0 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 57/144 (39%), Positives = 85/144 (59%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKP--ITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
+RQTL+FSAT P IQ+ AR L KP + + VG+ G +V Q V V + K
Sbjct: 472 ERQTLMFSATFPSSIQSLAREIL-KPDYLFVVVGQVGGACS--DVEQMVIEVDEFGKKDK 528
Query: 273 LLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
L+E LQ+ ++F + K+ D I +L + V + +IHG ++Q+ER ++ FR GQ
Sbjct: 529 LMEILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQ 588
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VA++GLD E + +VIN
Sbjct: 589 CPVIVATSVAARGLDIENVSYVIN 612
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 224 (83.9 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ +I S + QTLLFSATMP I+ A + P + V K M N+ Q
Sbjct: 164 EDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKV--KAKEMTVSNIQQFYL 221
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V + K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 222 EVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRM 281
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ F++G +V+VATDVA++GLD + HV N
Sbjct: 282 VALRKFKQGAIEVLVATDVAARGLDISGVTHVYN 315
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 224 (83.9 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 55/154 (35%), Positives = 82/154 (53%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
+D+ +I S + QTLLFSATMP I+ A + +P + V K M N+ Q
Sbjct: 164 DDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKV--KAKEMTVSNIQQFYL 221
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 222 EVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRM 281
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ F++G +V+VATDVA++GLD + HV N
Sbjct: 282 VALRKFKEGAIEVLVATDVAARGLDISGVTHVYN 315
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 213 (80.0 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 50/145 (34%), Positives = 83/145 (57%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKP-ITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271
+ +RQTL+FSAT P+++Q A L I + +G +V Q + V + +K
Sbjct: 351 KDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT--CGACSDVQQNILQVPRLSKRD 408
Query: 272 YLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKG 330
L+E LQ T ++F + K+ D + +L + + + +IHG ++Q ER ++ FR G
Sbjct: 409 KLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSG 468
Query: 331 QKDVMVATDVASKGLDFEEIKHVIN 355
+ ++VAT VAS+GLD E ++HVIN
Sbjct: 469 KCQILVATSVASRGLDIENVQHVIN 493
Score = 52 (23.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 156 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 198
+ G D P +F ++L + + G K TP+Q IP
Sbjct: 157 MSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIP 199
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 223 (83.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I + QTLLFSATMP I+ A + +P I V MP N+ Q
Sbjct: 163 EDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V+++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRM 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +V+VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 314
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 223 (83.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I + QTLLFSATMP I+ A + +P I V MP N+ Q
Sbjct: 163 EDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V+++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRM 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +V+VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 314
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 223 (83.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I + QTLLFSATMP I+ A + +P I V MP N+ Q
Sbjct: 163 EDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V+++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRM 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +V+VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 314
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 223 (83.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I + QTLLFSATMP I+ A + +P I V MP N+ Q
Sbjct: 163 EDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V+++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRM 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +V+VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 314
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 223 (83.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I + QTLLFSATMP I+ A + +P I V MP N+ Q
Sbjct: 163 EDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V+++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRM 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +V+VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 314
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 223 (83.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I + QTLLFSATMP I+ A + +P I V MP N+ Q
Sbjct: 163 EDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V+++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRM 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +V+VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 314
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 223 (83.6 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 56/154 (36%), Positives = 80/154 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I + QTLLFSATMP I+ A + +P I V MP N+ Q
Sbjct: 163 EDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYL 220
Query: 263 YVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V+++ K L L P + ++F K+ VD + E L L+G A IHG Q +R
Sbjct: 221 EVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRM 280
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ F++G +V+VATDVA++GLD + HV N
Sbjct: 281 SVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 314
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 199 (75.1 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 49/161 (30%), Positives = 90/161 (55%)
Query: 211 FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ---E 267
F +R T++F+AT+ ++ + L+ P + +G AG+ + N+ Q E++ E
Sbjct: 364 FHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALD--NISQSFEFLSSATTE 421
Query: 268 A-KIVYLLECLQK----TEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
A K L++ ++ TE P ++IFA K D++ + L + V IHG K Q+ R
Sbjct: 422 ATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMRE 481
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKK 362
+++ +FR + +V++ATDVA++G+D + VIN + +KK
Sbjct: 482 QAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQM-VKK 521
Score = 67 (28.6 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 129 TSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKK 188
T W + + + D+ I + + I +G ++P + + + LV + G ++
Sbjct: 132 THW-TNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEE 190
Query: 189 PTPIQVQGIPAALSE-DVRTIFSFFRGQRQTLLF 221
PT +Q IP AL + DV + G +TL F
Sbjct: 191 PTSVQRASIPLALKKRDVVGVAE--TGSGKTLAF 222
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 199 (75.1 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 49/161 (30%), Positives = 90/161 (55%)
Query: 211 FFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQ---E 267
F +R T++F+AT+ ++ + L+ P + +G AG+ + N+ Q E++ E
Sbjct: 364 FHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALD--NISQSFEFLSSATTE 421
Query: 268 A-KIVYLLECLQK----TEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
A K L++ ++ TE P ++IFA K D++ + L + V IHG K Q+ R
Sbjct: 422 ATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMRE 481
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKK 362
+++ +FR + +V++ATDVA++G+D + VIN + +KK
Sbjct: 482 QAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQM-VKK 521
Score = 67 (28.6 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 129 TSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKK 188
T W + + + D+ I + + I +G ++P + + + LV + G ++
Sbjct: 132 THW-TNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEE 190
Query: 189 PTPIQVQGIPAALSE-DVRTIFSFFRGQRQTLLF 221
PT +Q IP AL + DV + G +TL F
Sbjct: 191 PTSVQRASIPLALKKRDVVGVAE--TGSGKTLAF 222
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 219 (82.2 bits), Expect = 6.3e-16, P = 6.3e-16
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
+DV++I S RQTLLFSATMP +I+ A + L P I + + +N Q V
Sbjct: 168 KDVQSIISKLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVN--QSVY 225
Query: 263 YVKQEAKIVYLLECLQKTE-PPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
++ + K+ L L K + VLIF + K D I + L + A ++H GK Q R
Sbjct: 226 HLDKSNKVPLLFNILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVRE 285
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++++F+ V+VATDVA++G+D + I VIN
Sbjct: 286 EALQNFKDSTLRVLVATDVAARGIDVDNITLVIN 319
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 209 (78.6 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 51/150 (34%), Positives = 83/150 (55%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVK-----QEAK 269
+RQTL+FSAT PK+++ A L PI I VG + ++ S+NV Q + + Q
Sbjct: 287 ERQTLMFSATWPKEVKLLASKFLKDPIKITVG-SQELTGSINVTQHIVNIDDLSDLQSDD 345
Query: 270 IVY-LLECLQKTEPP--VLIFAEKKQDVDAIHEYLLL-KGVEAVAIHGGKDQEERTRSVE 325
++Y + + +P V++F +K D YL K V+++ +H GKDQ R ++
Sbjct: 346 LIYDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLK 405
Query: 326 SFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
FR + +++ATDVA++GLD +K V N
Sbjct: 406 LFRDHRIRILIATDVAARGLDIPSVKAVFN 435
Score = 54 (24.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 3 NESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDD-EDNNKDSTDEENDES 61
+ES DE V+ K K I+ ++E+ EKK +D E+ K+ T E+ S
Sbjct: 33 DESSDESSSSDSEVES--KSKSIKKSSKSEEKKSEKKSSSSKEDKEEEVKEETKEDIVLS 90
Query: 62 KV-WGRMSNI 70
W + N+
Sbjct: 91 PTEWRKKHNV 100
Score = 44 (20.5 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 11 VPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSD-DEDNNKDSTDEENDESK 62
+P S K + + + +++ ++ Q KKL +S DE +++ S+ + ESK
Sbjct: 1 MPSTSSKRKTEDESLEV-KVEQS---SSKKLKMSKRDESSDESSSSDSEVESK 49
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 220 (82.5 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 55/160 (34%), Positives = 86/160 (53%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN--VV--- 258
D+ IFS RQTL FSATM +I+ + L P I V R ++ VV
Sbjct: 167 DIERIFSLTPFTRQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFK 226
Query: 259 ---QEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315
++ E ++ A + L++ + +IF +K DVD + + L G +A IHG
Sbjct: 227 GSRRDREASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDL 286
Query: 316 DQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
DQ +RTR+++ FR+G+ ++VA+DVA++GLD + HV N
Sbjct: 287 DQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFN 326
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 181 (68.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 42/138 (30%), Positives = 77/138 (55%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQ 278
+FSAT ++ + R L IT++VG + + V QE+ +V E K++ + E ++
Sbjct: 349 MFSATFAYDVEQWCRLNLDSVITVSVGARNSAVET--VEQELLFVGSETGKLLAMRELVK 406
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K PPVL+F + + + L+ +G+ IH + Q++R +V SFR G+ V++
Sbjct: 407 KGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLIC 466
Query: 338 TDVASKGLDFEEIKHVIN 355
T + ++G+DF+ + VIN
Sbjct: 467 TALLARGIDFKGVNLVIN 484
Score = 85 (35.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 139 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVML 198
Query: 202 SEDVRTIFSFFRGQRQTLLFS 222
+ S G +TL FS
Sbjct: 199 -HGRELLASAPTGSGKTLAFS 218
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 217 (81.4 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 50/163 (30%), Positives = 90/163 (55%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN-VVQEVE 262
D++ + RQTL FSAT KI+ A + PI + V + ++ +V V+
Sbjct: 175 DLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVD 234
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++ + YL+ K VL+F + +Q DA+ E L L G++AV+I+G K Q R +
Sbjct: 235 KKRKRELLSYLIG--SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQK 292
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
+++ F+ G+ ++ATDVA++GLD +++ V+N + K ++
Sbjct: 293 ALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDY 335
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 217 (81.4 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 50/163 (30%), Positives = 90/163 (55%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN-VVQEVE 262
D++ + RQTL FSAT KI+ A + PI + V + ++ +V V+
Sbjct: 175 DLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVD 234
Query: 263 YVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
++ + YL+ K VL+F + +Q DA+ E L L G++AV+I+G K Q R +
Sbjct: 235 KKRKRELLSYLIG--SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQK 292
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
+++ F+ G+ ++ATDVA++GLD +++ V+N + K ++
Sbjct: 293 ALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDY 335
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 217 (81.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 57/165 (34%), Positives = 88/165 (53%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN--VV---- 258
V I + R RQT+LFSAT P+K++ A+ L P+ I VG + P + VV
Sbjct: 466 VNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFET 525
Query: 259 --QEVEYVKQEA--KIVYLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIH 312
+E + KQ+ K+ +L Q P +L+F EK+ D D + LL A+AIH
Sbjct: 526 SAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIH 585
Query: 313 GGKDQEERTRSVESFRKGQK--DVMVATDVASKGLDFEEIKHVIN 355
GGKDQ +R +++ F ++++AT +A++GLD + VIN
Sbjct: 586 GGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVIN 630
Score = 47 (21.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 SSNESDDEHYVPYVSVKER-------KKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDS 53
+ ES+DE V S++E K +K I+ + + E +K+ +DD + D
Sbjct: 157 NDKESEDELDVFLASIRESELKSDNTKAEKAIE--SIPEGDVENEKE---NDDYGGDGDE 211
Query: 54 TDEENDESKV 63
DE ++ES++
Sbjct: 212 EDESDEESRL 221
Score = 45 (20.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 11/49 (22%), Positives = 31/49 (63%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSD---DEDNNKDSTDEENDESK 62
K RK+++ ++L R +++ +++++ V + ED+ +++ EE +S+
Sbjct: 33 KLRKRREQLELWRQKKQQQQQEQEEVQNKAKKTEDSTNNTSTEEVKKSR 81
Score = 42 (19.8 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 38 KKKLVLSDDEDNNKDS 53
K+ L DDED+ K+S
Sbjct: 122 KRNLDFGDDEDDRKNS 137
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 217 (81.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 57/165 (34%), Positives = 88/165 (53%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMN--VV---- 258
V I + R RQT+LFSAT P+K++ A+ L P+ I VG + P + VV
Sbjct: 466 VNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFET 525
Query: 259 --QEVEYVKQEA--KIVYLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIH 312
+E + KQ+ K+ +L Q P +L+F EK+ D D + LL A+AIH
Sbjct: 526 SAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIH 585
Query: 313 GGKDQEERTRSVESFRKGQK--DVMVATDVASKGLDFEEIKHVIN 355
GGKDQ +R +++ F ++++AT +A++GLD + VIN
Sbjct: 586 GGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVIN 630
Score = 47 (21.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 SSNESDDEHYVPYVSVKER-------KKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDS 53
+ ES+DE V S++E K +K I+ + + E +K+ +DD + D
Sbjct: 157 NDKESEDELDVFLASIRESELKSDNTKAEKAIE--SIPEGDVENEKE---NDDYGGDGDE 211
Query: 54 TDEENDESKV 63
DE ++ES++
Sbjct: 212 EDESDEESRL 221
Score = 45 (20.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 11/49 (22%), Positives = 31/49 (63%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSD---DEDNNKDSTDEENDESK 62
K RK+++ ++L R +++ +++++ V + ED+ +++ EE +S+
Sbjct: 33 KLRKRREQLELWRQKKQQQQQEQEEVQNKAKKTEDSTNNTSTEEVKKSR 81
Score = 42 (19.8 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 38 KKKLVLSDDEDNNKDS 53
K+ L DDED+ K+S
Sbjct: 122 KRNLDFGDDEDDRKNS 137
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 222 (83.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 50/153 (32%), Positives = 88/153 (57%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
V I R RQT++FSAT P++++ AR L KPI + VG G+ + V Q V +
Sbjct: 681 VMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVG--GRSVVCKEVEQHVVIL 738
Query: 265 KQEAKIVYLLECL--QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+AK LLE L + +++F +K+++ D + L+ +++HGG DQ +R
Sbjct: 739 NDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDS 798
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++ F+ G+ +++AT VA++GLD +++ V+N
Sbjct: 799 TIIDFKSGKVRLLIATSVAARGLDVKDLILVVN 831
Score = 44 (20.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESK 62
KER+++K +ER +EK++ D+D +D E+ +S+
Sbjct: 121 KEREREK-------EKEREKEKER---ERDKDRERDRQREKESDSR 156
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 208 (78.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 49/156 (31%), Positives = 83/156 (53%)
Query: 203 EDVRTIFSFFRG--QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE 260
+D+R +F QR +LFSAT+ K+Q A + P+ + + K S N+ +E
Sbjct: 177 KDIRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKT--SKNIKEE 234
Query: 261 VEYVKQEAKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
+ Y QE K+ LL +++ P ++F+ K + + +L G + G Q++
Sbjct: 235 IFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKK 294
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
R R +E F +GQ D++VATDVA++GL ++ HV N
Sbjct: 295 RIRILEQFTQGQLDILVATDVAARGLHISDVSHVYN 330
Score = 46 (21.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 174 PESLVRALEAKGIKKPTPIQVQGIPAAL-SEDV 205
PE + +AL G + TPIQ +P L S+D+
Sbjct: 18 PE-VKQALAENGFEFCTPIQALSLPVLLQSKDI 49
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 208 (78.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 49/156 (31%), Positives = 83/156 (53%)
Query: 203 EDVRTIFSFFRG--QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQE 260
+D+R +F QR +LFSAT+ K+Q A + P+ + + K S N+ +E
Sbjct: 177 KDIRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKT--SKNIKEE 234
Query: 261 VEYVKQEAKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
+ Y QE K+ LL +++ P ++F+ K + + +L G + G Q++
Sbjct: 235 IFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKK 294
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
R R +E F +GQ D++VATDVA++GL ++ HV N
Sbjct: 295 RIRILEQFTQGQLDILVATDVAARGLHISDVSHVYN 330
Score = 46 (21.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 174 PESLVRALEAKGIKKPTPIQVQGIPAAL-SEDV 205
PE + +AL G + TPIQ +P L S+D+
Sbjct: 18 PE-VKQALAENGFEFCTPIQALSLPVLLQSKDI 49
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 185 (70.2 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 44/142 (30%), Positives = 74/142 (52%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLL 274
+R+TLLFSATM K++ R++L +P+ + V + K ++Q + + K YL+
Sbjct: 220 ERRTLLFSATMTSKVEKLQRASLHQPVRVAV--SSKFSTVDTLIQRYLFFPFKHKDTYLV 277
Query: 275 ECLQKTEP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKD 333
+ + ++IFA D + L G A+ +HG Q R ++ F+ G +
Sbjct: 278 YLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARS 337
Query: 334 VMVATDVASKGLDFEEIKHVIN 355
+VATDVA++GLD + VIN
Sbjct: 338 TLVATDVAARGLDIPLVDVVIN 359
Score = 74 (31.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFR-GQRQTLLFSATM 225
+F+ + + + L A E G K PTPIQ + IP L++ R + + G +T F+ +
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNK--RDVIGLAQTGSGKTAAFALPV 104
Query: 226 PKKIQN 231
+++ N
Sbjct: 105 IQELWN 110
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 177 (67.4 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 40/138 (28%), Positives = 77/138 (55%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQ 278
+FSAT ++ + + L IT+++G + + V QE+ +V E K++ + E ++
Sbjct: 259 MFSATFAYDVEQWCKLNLDNVITVSIGARNSAVET--VEQELLFVGSETGKLLAMRELVK 316
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K PPVL+F + + + L+ +G+ IH + Q++R +V SFR G+ V++
Sbjct: 317 KGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLIC 376
Query: 338 TDVASKGLDFEEIKHVIN 355
T + ++G+DF+ + VIN
Sbjct: 377 TALLARGIDFKGVNLVIN 394
Score = 84 (34.6 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 49 NFFRNKHKIHVQGTDLPDPITTFQQLDQEYKISSRLLQNILDAGFQLPTPIQMQAIPVML 108
Query: 202 SEDVRTIFSFFRGQRQTLLFS 222
+ S G +TL FS
Sbjct: 109 -HGRELLASAPTGSGKTLAFS 128
>UNIPROTKB|B7ZBU3 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
HOVERGEN:HBG015893 EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
IPI:IPI00916009 SMR:B7ZBU3 Ensembl:ENST00000433235
HOGENOM:HOG000200515 Uniprot:B7ZBU3
Length = 224
Score = 196 (74.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 49/143 (34%), Positives = 78/143 (54%)
Query: 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLEC 276
QT+L SAT+P I+ A L P+ I G K +P NV Q + +V+ AK L E
Sbjct: 22 QTILVSATIPTSIEQLASQLLHNPVRIITGE--KNLPCANVRQIILWVEDPAKKKKLFEI 79
Query: 277 LQKTE---PPVLIFAEKKQDVDAIHEYLL-LKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
L + PPVL+F + K D + E + + G+++++IH K Q ER ++ +G
Sbjct: 80 LNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDY 139
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
+V+V+T V +GLD ++ V+N
Sbjct: 140 EVVVSTGVLGRGLDLISVRLVVN 162
>UNIPROTKB|E7EQG4 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192 EMBL:AL445483
HGNC:HGNC:25360 IPI:IPI00514037 Ensembl:ENST00000367348
ProteinModelPortal:E7EQG4 SMR:E7EQG4 ArrayExpress:E7EQG4
Bgee:E7EQG4 Uniprot:E7EQG4
Length = 207
Score = 196 (74.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 49/143 (34%), Positives = 78/143 (54%)
Query: 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLEC 276
QT+L SAT+P I+ A L P+ I G K +P NV Q + +V+ AK L E
Sbjct: 19 QTILVSATIPTSIEQLASQLLHNPVRIITGE--KNLPCANVRQIILWVEDPAKKKKLFEI 76
Query: 277 LQKTE---PPVLIFAEKKQDVDAIHEYLL-LKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
L + PPVL+F + K D + E + + G+++++IH K Q ER ++ +G
Sbjct: 77 LNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDY 136
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
+V+V+T V +GLD ++ V+N
Sbjct: 137 EVVVSTGVLGRGLDLISVRLVVN 159
>UNIPROTKB|Q5T1W1 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360 IPI:IPI00514037
HOGENOM:HOG000200515 SMR:Q5T1W1 Ensembl:ENST00000413408
Uniprot:Q5T1W1
Length = 205
Score = 196 (74.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 49/143 (34%), Positives = 78/143 (54%)
Query: 217 QTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVYLLEC 276
QT+L SAT+P I+ A L P+ I G K +P NV Q + +V+ AK L E
Sbjct: 17 QTILVSATIPTSIEQLASQLLHNPVRIITGE--KNLPCANVRQIILWVEDPAKKKKLFEI 74
Query: 277 LQKTE---PPVLIFAEKKQDVDAIHEYLL-LKGVEAVAIHGGKDQEERTRSVESFRKGQK 332
L + PPVL+F + K D + E + + G+++++IH K Q ER ++ +G
Sbjct: 75 LNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDY 134
Query: 333 DVMVATDVASKGLDFEEIKHVIN 355
+V+V+T V +GLD ++ V+N
Sbjct: 135 EVVVSTGVLGRGLDLISVRLVVN 157
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 197 (74.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 50/155 (32%), Positives = 89/155 (57%)
Query: 203 EDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
+++ I S + +RQTLLFSATM +IQ+ + +L KP+ I + K + S + Q V
Sbjct: 294 DELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPP-KSVASKLLQQFV 352
Query: 262 EYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
K++ K L + L+ V++F +K+ + L L G++ +HG QE+R
Sbjct: 353 RIRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQR 412
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++V++F+ + V++ TD+A++GLD +I+ VIN
Sbjct: 413 LQNVKNFKSLEVPVLICTDLAARGLDIPKIELVIN 447
Score = 63 (27.2 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL-SEDV 205
SF+ ++L +++ + KPTPIQ IP AL +D+
Sbjct: 131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDI 170
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 197 (74.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 50/155 (32%), Positives = 89/155 (57%)
Query: 203 EDVRTIFSFF-RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
+++ I S + +RQTLLFSATM +IQ+ + +L KP+ I + K + S + Q V
Sbjct: 294 DELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPP-KSVASKLLQQFV 352
Query: 262 EYVKQEA-KIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
K++ K L + L+ V++F +K+ + L L G++ +HG QE+R
Sbjct: 353 RIRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQR 412
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
++V++F+ + V++ TD+A++GLD +I+ VIN
Sbjct: 413 LQNVKNFKSLEVPVLICTDLAARGLDIPKIELVIN 447
Score = 63 (27.2 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL-SEDV 205
SF+ ++L +++ + KPTPIQ IP AL +D+
Sbjct: 131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDI 170
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 172 (65.6 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 39/138 (28%), Positives = 77/138 (55%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQ 278
+FSAT ++ + + L I++++G + + V QE+ +V E K++ + E ++
Sbjct: 243 MFSATFAYDVEQWCKLNLDNVISVSIGARNSAVET--VEQELLFVGSETGKLLAMRELVK 300
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K PPVL+F + + + L+ +G+ IH + Q++R +V SFR G+ V++
Sbjct: 301 KGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLIC 360
Query: 338 TDVASKGLDFEEIKHVIN 355
T + ++G+DF+ + VIN
Sbjct: 361 TALLARGIDFKGVNLVIN 378
Score = 88 (36.0 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+ +R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 33 NFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML 92
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFA----RSALVKP 240
+ S G +TL FS + +++ A R+ ++ P
Sbjct: 93 -HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISP 134
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 177 (67.4 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 40/138 (28%), Positives = 77/138 (55%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQ 278
+FSAT ++ + + L IT+++G + + V QE+ +V E K++ + E ++
Sbjct: 353 MFSATFAYDVEQWCKLNLDNVITVSIGARNSAVET--VEQELLFVGSETGKLLAMRELVK 410
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K PPVL+F + + + L+ +G+ IH + Q++R +V SFR G+ V++
Sbjct: 411 KGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLIC 470
Query: 338 TDVASKGLDFEEIKHVIN 355
T + ++G+DF+ + VIN
Sbjct: 471 TALLARGIDFKGVNLVIN 488
Score = 85 (35.0 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 143 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVML 202
Query: 202 SEDVRTIFSFFRGQRQTLLFS 222
+ S G +TL FS
Sbjct: 203 -HGRELLASAPTGSGKTLAFS 222
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 208 (78.3 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 54/168 (32%), Positives = 83/168 (49%)
Query: 199 AALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVV 258
A E+V I +R T LFSATM K+ R++LV P+ + V A K ++
Sbjct: 277 ADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRASLVNPVKVQV--ASKYQTVDTLL 334
Query: 259 QEVEYVKQEAKIVYLLECLQKTEPPV-LIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ 317
Q+ +V + K YL L + + +IF I L G A+ I+G DQ
Sbjct: 335 QQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQ 394
Query: 318 EERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
+R S+ F++G K ++VATDVA++GLD + VIN + +E+
Sbjct: 395 GKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEY 442
Score = 47 (21.6 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKV 63
KE K ++L + L E+ EE+K++ + N K S +EE V
Sbjct: 75 KEIKNEELDEDSLL--EKEEEEKEIEEFINNTNQKKSEEEEKKYENV 119
Score = 38 (18.4 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 12/52 (23%), Positives = 28/52 (53%)
Query: 15 SVKERKKQ---KLIQLGRLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKV 63
++ E+ KQ K+I+ + + EE++++ ++ K+ +EE DE +
Sbjct: 36 TLTEKPKQIVKKVIKKQEEKEVKEEEEEEVKEEIKKEIKKEIKNEELDEDSL 87
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 215 (80.7 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 51/144 (35%), Positives = 83/144 (57%)
Query: 215 QRQTLLFSATMPKKIQNFARSAL-VKPITINVGRAGKIMPSMN--VVQEVEYVKQEAKIV 271
+RQTL+FSAT P+ IQ A L V + + VG G + +Q ++ K+E +++
Sbjct: 367 ERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKRE-QLL 425
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
LL + ++F E K+ D I +L + V +IHG ++Q ER +++ FR G+
Sbjct: 426 DLLRTIGSER--TMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGK 483
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
V+VAT VAS+GLD +++HV+N
Sbjct: 484 CPVLVATSVASRGLDIPDVQHVVN 507
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 188 (71.2 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 200 ALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITI----NVGRAGKIMPSM 255
A + + + RQTLLFSATM ++I A +L KP+ I N A K+
Sbjct: 310 AFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEF 369
Query: 256 NVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315
++ +EA + L+ +T ++F K+D + L L G++ +
Sbjct: 370 IRIRAGRETDREAMVAALVTRTFQTN--TIVFVRTKKDCQRMQILLGLLGIKVGQMQSSL 427
Query: 316 DQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA--KIKKREHGV 367
Q +R S+ F+K + DV+V+TD+AS+GLD E ++ VIN IK+ H V
Sbjct: 428 TQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRV 481
Score = 73 (30.8 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 155 LVEGDDVPPAC-CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
L++G + + SF M L +++A G PTPIQ IP AL+ +D+
Sbjct: 136 LIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDI 188
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 172 (65.6 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 39/138 (28%), Positives = 77/138 (55%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQ 278
+FSAT ++ + + L I++++G + + V QE+ +V E K++ + E ++
Sbjct: 351 MFSATFAYDVEQWCKLNLDNVISVSIGARNSAVET--VEQELLFVGSETGKLLAMRELVK 408
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K PPVL+F + + + L+ +G+ IH + Q++R +V SFR G+ V++
Sbjct: 409 KGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLIC 468
Query: 338 TDVASKGLDFEEIKHVIN 355
T + ++G+DF+ + VIN
Sbjct: 469 TALLARGIDFKGVNLVIN 486
Score = 88 (36.0 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+ +R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 141 NFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML 200
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFA----RSALVKP 240
+ S G +TL FS + +++ A R+ ++ P
Sbjct: 201 -HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISP 242
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 174 (66.3 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 44/159 (27%), Positives = 87/159 (54%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMP-KKIQNFARSALVKPITINVGRAGKIMPSMNV--- 257
++D+ I R ++QTLLFSAT+ IQ+FA L P+ ++ + + ++
Sbjct: 168 AQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY 227
Query: 258 -VQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
++E+ + A +V+LL+ + T ++F K++ V + +L G+ + G
Sbjct: 228 RADDLEH--KTALLVHLLKQPEATRS--IVFVRKRERVHELANWLREAGINNCYLEGEMV 283
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q +R +++ +G+ +V+VATDVA++G+D ++ HV N
Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN 322
Score = 81 (33.6 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
+F ++L ESL+ AL+ KG +PT IQ IP AL DV
Sbjct: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV 44
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 181 (68.8 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 46/163 (28%), Positives = 79/163 (48%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEY 263
+V I R+T LFSATM KK+Q R+AL P+ +V + K + Q +
Sbjct: 242 EVDKILKVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSV--SSKYATVDKLQQFYIF 299
Query: 264 VKQEAKIVYLLECLQKTEP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTR 322
+ + K YL+ L + ++F + + L G+ A+ +HG Q +R
Sbjct: 300 IPSKYKDCYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLG 359
Query: 323 SVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
++ F+ + V++ATDVAS+GLD + VIN + +++
Sbjct: 360 ALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDY 402
Score = 75 (31.5 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
SF+ + + E L A + G KKPT IQ++ IP AL DV
Sbjct: 80 SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDV 119
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 213 (80.0 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 55/156 (35%), Positives = 81/156 (51%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
++DV I S +Q LFSATMP I+ + L P + K + N+ Q
Sbjct: 174 ADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAENISQS- 230
Query: 262 EYVKQEAKIVYLLECLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
Y++ K+ L L+ EP +++F KQ + I E L +G A AI G Q +
Sbjct: 231 -YIQVARKMDALTRVLE-VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQ 288
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
R R++ + R G D++VATDVA++GLD E I HV+N
Sbjct: 289 RERTITALRDGDIDILVATDVAARGLDVERISHVLN 324
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 211 (79.3 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 50/152 (32%), Positives = 80/152 (52%)
Query: 216 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV-KQEAKIVYLL 274
RQTL+F+ATM I+ A + KP+ +G P + Q VEY E K L
Sbjct: 372 RQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ--QVVEYADNDEDKFKKLK 429
Query: 275 ECLQKTEPPVLIFAEKKQDVDAIHEYLLLK-GVEAVAIHGGKDQEERTRSVESFRKGQKD 333
+ K +PP++IF KQ D + E + ++ +HG K QE+R S++ FR +
Sbjct: 430 PIVAKYDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQ 489
Query: 334 VMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
+M+AT+VA++GLD + V+N + K ++
Sbjct: 490 IMIATNVAARGLDIPNVSLVVNFQISKKMDDY 521
Score = 41 (19.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 39 KKLVLSDDEDNNKDSTDEENDESKVWGRMSN-----ISLLDQHS 77
K L+L+ + + E +K+W + SN IS++ HS
Sbjct: 256 KALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHS 299
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 188 (71.2 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 45/144 (31%), Positives = 81/144 (56%)
Query: 213 RGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIVY 272
R RQT++ SAT P ++ A+S L P+ + VG + + V++ +++ K Y
Sbjct: 229 RPDRQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGV-VLKYLQFDKDIFTWKY 287
Query: 273 LLECLQK-TEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
+ Q V++F + D I L ++GV ++HG ++Q +R ++++ F+KG+
Sbjct: 288 MQVNAQSFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGK 347
Query: 332 KDVMVATDVASKGLDFEEIKHVIN 355
++VATD+AS+GLD +I HV N
Sbjct: 348 VRILVATDLASRGLDVHDITHVFN 371
Score = 64 (27.6 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 123 YNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD--VPPACCSFR--LMKLPESLV 178
Y + +T+ +P + + ++II +L+ EG+ +P C F + P+ +
Sbjct: 10 YKESSRTACMSPEEVELWRKENNNIICDDLK---EGEKRCIPNPVCKFEDVFEQYPDIMA 66
Query: 179 RALEAKGIKKPTPIQVQGIPAAL 201
+ G +KPTPIQ Q P L
Sbjct: 67 N-IRKTGFQKPTPIQSQAWPIIL 88
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 212 (79.7 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 48/138 (34%), Positives = 80/138 (57%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV-KQEAKIVYLLECLQ 278
LFSAT+P ++ ARS + + + +GR K S V Q++ + +E K++ L +
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGR--KNTASETVKQKLVFAGSEEGKLLALRQSFA 376
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
++ PPVLIF + K+ +++ L + + A IH ER +V+ FR G+K V++A
Sbjct: 377 ESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIA 436
Query: 338 TDVASKGLDFEEIKHVIN 355
TDV ++G+DF+ I VIN
Sbjct: 437 TDVIARGMDFKGINCVIN 454
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 207 (77.9 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 49/155 (31%), Positives = 84/155 (54%)
Query: 205 VRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYV 264
+R + R RQT++ SAT P ++ A+S + PI + VG + + +V Q ++ +
Sbjct: 451 IRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLD-LAATHSVKQIIKLM 509
Query: 265 KQEAK----IVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+ + I ++ + T+ ++IF +K D + L L G IHG +DQ +R
Sbjct: 510 EDDMDKFNTITSFVKNMSSTDK-IIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDR 568
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+++ + G ++VATDVAS+GLD E+I HVIN
Sbjct: 569 EQAIADIKSGVVRILVATDVASRGLDIEDITHVIN 603
Score = 48 (22.0 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 157 EGDDVPPA---CCSFR--LMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFS 210
EG+ PP +F + P+ L + G KP+PIQ Q P L D+ I
Sbjct: 270 EGETSPPIPNPVWTFEQCFAEYPDML-EEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQ 328
Query: 211 FFRGQRQTLLF 221
G +TL F
Sbjct: 329 --TGTGKTLAF 337
Score = 37 (18.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 114 VAELAKGIQYNDPIKTS-WRAPRCILSLPDQVHDIIR 149
V E +G + + PI W +C PD + +I +
Sbjct: 265 VFEPKEG-ETSPPIPNPVWTFEQCFAEYPDMLEEITK 300
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 210 (79.0 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 52/156 (33%), Positives = 84/156 (53%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEV 261
S D++ I +RQ LLFSAT ++ A ++KP I+ A K + + V +V
Sbjct: 166 SADIQKILQAVNKKRQNLLFSATFSSAVKKLANEMMIKPQVIS---ADKQNTTADTVSQV 222
Query: 262 EY-VKQEAKIVYLLECL-QKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEE 319
Y V+Q K L E + +K VL+F + D + + L L G+ + +HG K Q
Sbjct: 223 VYPVEQRRKRELLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGS 282
Query: 320 RTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
R R++ F G+ V+VAT+VA++GLD +++V+N
Sbjct: 283 RRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVN 318
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 211 (79.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 47/164 (28%), Positives = 84/164 (51%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVE 262
ED+ I RQT LFSAT K+++ AR +L P+ ++V + + + + Q
Sbjct: 255 EDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYC 314
Query: 263 YVKQEAKIVYLLECLQKT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERT 321
V + +++ L+ L+K +++F + V E + + V+ IHGG DQ RT
Sbjct: 315 VVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRT 374
Query: 322 RSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKREH 365
++ F K +K +++ TDVA++GLD + +I + K E+
Sbjct: 375 KTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEY 418
Score = 39 (18.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 17 KERKKQKLIQLGRLAQERHEEKKKLVLSDDED 48
K KK K ++ G++ +E EEK + + D ED
Sbjct: 47 KSEKKVKKVR-GKIEEE--EEKVE-AMEDGED 74
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 194 (73.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPIT-INVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
+RQT++FSAT P +Q AR L + T I + + G + V+QE E + +K+ L
Sbjct: 485 KRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAA--NKCVIQEFELCDRTSKVDKL 542
Query: 274 LECL------QKTEP-------PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
L+ L TE ++F +++ D + + V A+ IHG ++Q+ER
Sbjct: 543 LKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKER 602
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ +++ FR G K V++AT V +GLD + + HVIN
Sbjct: 603 SAALKLFRSGAKPVLIATAVVERGLDIKGVDHVIN 637
Score = 62 (26.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 151 NLRILVEGDDVP-PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP-AALSEDV 205
+++++ G V C SF +P+S+ R +E G + TPIQ +P A +D+
Sbjct: 282 SVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDI 338
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 194 (73.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 215 QRQTLLFSATMPKKIQNFARSALVKPIT-INVGRAGKIMPSMNVVQEVEYVKQEAKIVYL 273
+RQT++FSAT P +Q AR L + T I + + G + V+QE E + +K+ L
Sbjct: 485 KRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAA--NKCVIQEFELCDRTSKVDKL 542
Query: 274 LECL------QKTEP-------PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
L+ L TE ++F +++ D + + V A+ IHG ++Q+ER
Sbjct: 543 LKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKER 602
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+ +++ FR G K V++AT V +GLD + + HVIN
Sbjct: 603 SAALKLFRSGAKPVLIATAVVERGLDIKGVDHVIN 637
Score = 62 (26.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 151 NLRILVEGDDVP-PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP-AALSEDV 205
+++++ G V C SF +P+S+ R +E G + TPIQ +P A +D+
Sbjct: 282 SVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDI 338
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 213 (80.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 48/163 (29%), Positives = 85/163 (52%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQ-E 260
+E ++ I + G QT+LFSAT+PK + FAR+ L +P+ I + K+ + +
Sbjct: 197 AEQLQEILARLPGSHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFH 256
Query: 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
V + A +++LL C+ K + ++F K + + E L +G+ I+ DQ R
Sbjct: 257 VRGDDKPAVLLHLLRCVVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTAR 316
Query: 321 TRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEAKIKKR 363
++ F G+ V++ TDVA++GLD + +VIN K +
Sbjct: 317 KINIAKFAHGKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSK 359
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 172 (65.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 38/138 (27%), Positives = 78/138 (56%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQ 278
+FSAT ++ + + L +++++G + + V QE+ +V E K++ + E ++
Sbjct: 352 MFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVET--VEQELLFVGSETGKLLAMRELVK 409
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K +PPVL+F + + + L+ +G+ IH + Q++R +V SFR G+ V++
Sbjct: 410 KGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLIC 469
Query: 338 TDVASKGLDFEEIKHVIN 355
T + ++G+DF+ + VIN
Sbjct: 470 TALLARGIDFKGVNLVIN 487
Score = 84 (34.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 142 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVML 201
Query: 202 SEDVRTIFSFFRGQRQTLLFS 222
+ S G +TL FS
Sbjct: 202 -HGRELLASAPTGSGKTLAFS 221
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 171 (65.3 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 39/138 (28%), Positives = 76/138 (55%)
Query: 220 LFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEA-KIVYLLECLQ 278
+FSA ++ + + L IT+++G + + V QE+ +V E K++ + E ++
Sbjct: 350 MFSAIFAYDVEQWCKLNLDNVITVSIGARNSAVET--VEQELLFVGSETGKLLAMRELVK 407
Query: 279 KT-EPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDVMVA 337
K PPVL+F + + + L+ +G+ IH + Q++R +V SFR G+ V++
Sbjct: 408 KGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLIC 467
Query: 338 TDVASKGLDFEEIKHVIN 355
T + ++G+DF+ + VIN
Sbjct: 468 TALLARGIDFKGVNLVIN 485
Score = 85 (35.0 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 146 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 201
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 140 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVML 199
Query: 202 SEDVRTIFSFFRGQRQTLLFS 222
+ S G +TL FS
Sbjct: 200 -HGRELLASAPTGSGKTLAFS 219
WARNING: HSPs involving 472 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 367 342 0.00096 116 3 11 22 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 722
No. of states in DFA: 613 (65 KB)
Total size of DFA: 209 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 32.76u 0.07s 32.83t Elapsed: 00:00:08
Total cpu time: 32.81u 0.08s 32.89t Elapsed: 00:00:09
Start: Thu Aug 15 13:35:34 2013 End: Thu Aug 15 13:35:43 2013
WARNINGS ISSUED: 2