RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7790
(367 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 77.7 bits (191), Expect = 9e-17
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 252 MPSMNVVQEVEYVKQEAKIVYLLECLQKTEP-PVLIFAEKKQDVDAIHEYLLLKGVEAVA 310
+P N+ + E L+ + LIF K+ D + L+ G+ AVA
Sbjct: 6 VPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVA 65
Query: 311 IHGGKDQEERTRS----------VESFRKGQKDVMVATDVASKG---LDFEEIKHVINTE 357
+ G D S + + G D ++ + + + T
Sbjct: 66 YYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTT 125
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 65.6 bits (159), Expect = 5e-13
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGR 247
E + ++ + Q +L SAT+P +I + PI I V R
Sbjct: 178 EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR 222
Score = 55.6 bits (133), Expect = 1e-09
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 157 EGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQR 216
E DV P +F M L E L+R + A G +KP+ IQ + I + S +
Sbjct: 11 EEVDVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGK 67
Query: 217 QTLLFSATMPKKIQNFAR 234
+ +
Sbjct: 68 TATFSISVLQCLDIQVRE 85
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 62.7 bits (151), Expect = 4e-12
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVG 246
+ I SF Q+LLFSAT P ++ F L KP IN+
Sbjct: 163 IIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
Score = 53.8 bits (128), Expect = 4e-09
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
+F L L+ + G +KP+PIQ + IP A++
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT 37
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 62.2 bits (150), Expect = 6e-12
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245
DV+ IF ++Q ++FSAT+ K+I+ R + P+ I V
Sbjct: 165 RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
Score = 50.3 bits (119), Expect = 6e-08
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQR 216
FR L L+RA+ G + P+ +Q + IP A+ + +
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGK 51
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 62.0 bits (149), Expect = 7e-12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245
DV I + Q L+FSAT+P+K++ F + + P ++V
Sbjct: 167 DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
Score = 52.8 bits (125), Expect = 1e-08
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIFSFFRGQRQ 217
F ++ A++ KPT IQ + IP AL + S +
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKT 52
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 61.5 bits (148), Expect = 9e-12
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 204 DVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITIN 244
+ I RQ LL+SAT P +Q F S L KP IN
Sbjct: 166 IMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
Score = 52.7 bits (125), Expect = 1e-08
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
F L L+ + G +KP+PIQ + IP ALS
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALS 39
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 61.4 bits (148), Expect = 1e-11
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGR 247
+ + IF Q +L SATMP + + + PI I V +
Sbjct: 174 DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 218
Score = 52.9 bits (126), Expect = 8e-09
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 160 DVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDVRTIFSFFRGQRQT 218
+ SF M L ESL+R + A G +KP+ IQ + I + DV G+ T
Sbjct: 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 65
Query: 219 LLFSATMPKKIQNFARSALV 238
S ++ A ALV
Sbjct: 66 FAISILQQIELDLKATQALV 85
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 59.8 bits (144), Expect = 3e-11
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245
E + IF+ Q +L SATMP + + P+ I V
Sbjct: 170 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
Score = 51.7 bits (123), Expect = 2e-08
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
F M+L E+L+R + G ++P+ IQ + I +
Sbjct: 11 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE 46
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 59.8 bits (144), Expect = 6e-11
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 261 VEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEER 320
+ + I L L+K +I+A ++ + I+E L G +
Sbjct: 5 EDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESL------KNKFRIGIVTATK 58
Query: 321 TRSVESFRKGQKDVMVAT----DVASKGLDF-EEIKHVIN 355
E F +G+ D ++ T +GLD E I+ +
Sbjct: 59 KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 98
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 58.0 bits (139), Expect = 2e-10
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 203 EDVRTIFSFFR----GQRQTLLFSATMPKKIQNFARSALVKPITINVG 246
+R I RQTL+FSAT PK+IQ A L I + VG
Sbjct: 191 PQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
Score = 52.2 bits (124), Expect = 2e-08
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 151 NLRILVEGDDV--PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS-EDV 205
++ + V G D +F +KL ++ + ++PTPIQ IPA L D+
Sbjct: 4 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDI 61
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 58.4 bits (140), Expect = 2e-10
Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 24/151 (15%)
Query: 212 FRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGKIMPSMNVVQEVEYVKQEAKIV 271
G+ + +AT P F +S + + E E
Sbjct: 128 EMGEAAGIFMTATPPGSRDPFPQSNAP-------------------IMDEEREIPERSWN 168
Query: 272 YLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQ 331
E + + + F + + I L G + + + E + R
Sbjct: 169 SGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIK----TRTND 224
Query: 332 KDVMVATDVASKGLDFEEIKHVINTEAKIKK 362
D +V TD++ G +F + + VI+ +K
Sbjct: 225 WDFVVTTDISEMGANF-KAERVIDPRRCMKP 254
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 52.0 bits (124), Expect = 2e-08
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINV 245
+DV I + ++ LLFSATMP++I N A+ + I
Sbjct: 164 KDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
Score = 51.2 bits (122), Expect = 3e-08
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 167 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSEDVRTIF 209
+F + L ++++ A+ KG +KPT IQ++ IP L+++ +
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVA 47
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 50.9 bits (121), Expect = 3e-08
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 260 EVEYVKQEAKIVYLLECLQKTEPP---VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
++ + +I L+ +++ L+ K+ + + +YL G++ +H
Sbjct: 7 TIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK 66
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
ER + R G+ DV+V ++ +GLD E+ V +A
Sbjct: 67 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 108
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 47.6 bits (112), Expect = 3e-07
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 259 QEVEYV-KQEAKIVYLLECLQKTEP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
Q V ++E K L + +IF ++ V+ + L AI+
Sbjct: 3 QFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP 62
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q+ER ++ FR G ++++TD+ ++G+D +++ VIN
Sbjct: 63 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 101
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 48.7 bits (115), Expect = 4e-07
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 269 KIVYLLECLQKTEPP--VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQ--------E 318
K+ ++ + + +++F ++ I L+ G++A G +
Sbjct: 147 KLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQR 206
Query: 319 ERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
E+ ++ F +G+ +V+VAT V +GLD E+ V+
Sbjct: 207 EQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF 243
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 46.2 bits (109), Expect = 9e-07
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 260 EVEYVKQEAKIVYLL-ECLQKTEP--PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKD 316
V E +I+ L+ ++ L+ + + + +L+ G+ A +H D
Sbjct: 7 LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD 66
Query: 317 QEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
+R + R G D +V ++ +GLD E+ V +A
Sbjct: 67 AFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 108
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 44.2 bits (103), Expect = 3e-06
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 256 NVVQEVEYVKQEAKIVYLLECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 315
N+ Q V + + L L+ E L+F + K+D + L G +A AIHG
Sbjct: 3 NIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDL 62
Query: 316 DQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
Q +R + + F++ + +++ATDV S+G+D ++ VIN
Sbjct: 63 SQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN 102
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 45.0 bits (106), Expect = 7e-06
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 275 ECLQKTEPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERTRSVESFRKGQKDV 334
+ + + P F + + + L G V ++ + E ++ + D
Sbjct: 30 DWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKPDF 85
Query: 335 MVATDVASKGLDFEEIKHVINTEAKIK 361
++ATD+A G + ++ V++ K
Sbjct: 86 ILATDIAEMGANL-CVERVLDCRTAFK 111
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 43.0 bits (100), Expect = 1e-05
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 256 NVVQEVEYV-KQEAKIVYLLECLQKTEP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHG 313
+ Q V ++E K L + +IF K+ VD + E + ++HG
Sbjct: 7 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG 66
Query: 314 GKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVINTEA 358
Q+ER ++ FR G V+++TDV ++GLD ++ +IN +
Sbjct: 67 DMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 111
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 42.6 bits (99), Expect = 2e-05
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 172 KLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
+ V L+ +GI++ P Q + + S
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFS 39
Score = 29.6 bits (65), Expect = 0.45
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 203 EDVRTIFSFFRGQRQTLLFSATMPKKIQNFAR 234
E + T + + SAT P + A
Sbjct: 160 EILVTKMRRMNKALRVIGLSATAP-NVTEIAE 190
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 39.1 bits (90), Expect = 4e-04
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 202 SEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRA 248
D++T + ++ +AT K + L + ++G +
Sbjct: 191 HYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL---LNFDIGSS 234
Score = 31.8 bits (71), Expect = 0.093
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 166 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 202
C F L + V K + +P IQ L
Sbjct: 22 CLFPEDFLLKEFVEFFR-KCVGEPRAIQKMWAKRILR 57
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 38.0 bits (87), Expect = 8e-04
Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 13/169 (7%)
Query: 190 TPIQVQGIPAALSEDVRTIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAG 249
++ I L+ED R + +++ ++ + + R+ I + G
Sbjct: 4 AKYTIKRIFVPLAEDERVEY-----EKREKVYKQFLRARGITLRRAEDFNKIVMASGYDE 58
Query: 250 KIMPSMNVVQEVEY--VKQEAKIVYLLECLQKTEPP-VLIFAEKKQDVDAIHEYLLLKGV 306
+ ++ +E + KI L E L++ ++IF + V I +
Sbjct: 59 RAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----F 113
Query: 307 EAVAIHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
AI +EER +E FR G+ +V++ V +G+D + +
Sbjct: 114 LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI 162
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 34.2 bits (77), Expect = 0.015
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 167 SFRLMKLPESLVRAL-EAKGIKKPTPIQVQGIPAALS 202
++ L + L E G ++ P Q + I LS
Sbjct: 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLS 39
Score = 33.1 bits (74), Expect = 0.036
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 214 GQRQTLLFSATMPKKIQ 230
+ +AT +
Sbjct: 173 PTLPFMALTATADDTTR 189
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 30.9 bits (69), Expect = 0.15
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 311 IHGGKDQEERTRSVESFRKGQKDVMVATDVASKGLDFEEIKHVIN 355
+HG QEE+ R + F +G+ D++V+T V G+D ++
Sbjct: 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI 114
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
{Acidaminococcus fermentans [TaxId: 905]}
Length = 317
Score = 30.3 bits (68), Expect = 0.36
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 137 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPI 192
+++L D + + I + G F + P + V + +GI T +
Sbjct: 3 VMTLKDAIAKYVHSGDHIALGG---------FTTDRKPYAAVFEILRQGITDLTGL 49
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein
BH05650 {Bartonella henselae [TaxId: 38323]}
Length = 118
Score = 27.9 bits (62), Expect = 0.95
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 120 GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSF--RLMKLPES 176
+ + I P I + + ++ R+L E D + L++LPE
Sbjct: 20 DMSHRGSIICI---PSGIYGIDMTGPVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEE 76
Query: 177 LVRALEAKGIKKPTPIQVQGIPAA 200
L L K I AA
Sbjct: 77 LRVLLWEKRI----SSDTMSTGAA 96
>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila
melanogaster [TaxId: 7227]}
Length = 117
Score = 26.7 bits (59), Expect = 1.9
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 40 KLVLSDDEDNNKDSTDEENDESKVWGRMSNISLLDQHSELKKMAEAKKESAKEKQLKEEE 99
+ L D +++ W + + H + ++ ++E
Sbjct: 55 VVKLLDASGKVQETLSITK-----WNTDTVEEFFETHLAKDGAGKNSYSVVEDADGDDDE 109
Query: 100 KILRS 104
LR+
Sbjct: 110 DYLRT 114
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 27.5 bits (61), Expect = 2.8
Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 22 QKLIQLG--RLAQERHEEKKKLVLSDDEDNNKDSTDEENDESKVWGRMSNISLLDQHSEL 79
K++++G + E E+ +K D + K E+ S + + I+ ++++++
Sbjct: 169 GKVLRVGFNGIINEAKEQLEKNRSIDPDFIKK----EKFLNSVIISCEAAITYVNRYAKK 224
Query: 80 -KKMAEAKKESAKEKQLKEEEKILRSVAETKA 110
K++A+ ++ ++ +L E KI V+ A
Sbjct: 225 AKEIADNTSDAKRKAELNEIAKICSKVSGEGA 256
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG
{Escherichia coli [TaxId: 562]}
Length = 65
Score = 24.1 bits (52), Expect = 8.3
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 1 SSNESDDEHYVPYVSVKERKKQKLIQLGRLAQERHEEKKKLVLSDDEDNNKD 52
+ + + P+ S K+ +LI LG A E LS+ +D +++
Sbjct: 15 TVVWGEISPFRPFCS----KRCQLIDLGEWAAEEKRIPSSGDLSESDDWSEE 62
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 26.0 bits (56), Expect = 8.9
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 67 MSNISLLDQHSELKKMAEAKKESAKEKQLKEEEK-------ILRSVAETKALMGVAELAK 119
MS++ + + +A K S E+ L++ E +L +A T +
Sbjct: 1 MSDLETVAKFLAESVIASTAKTS--ERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAG- 57
Query: 120 GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNL 152
+ + + IK W LP ++I++ +
Sbjct: 58 ALFFKNFIKRKWVDENGNHLLPANNVELIKKEI 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.359
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,272,161
Number of extensions: 59149
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 50
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)