BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7791
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 377 HKLLRMQLKPGQESELCHIVHID--TSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAP 434
+ L+ ++LK Q ++L + ++ T L L G+ L+ GL + + + +
Sbjct: 69 NNLIGLELKDNQITDLTPLKNLTKITELE-LSGNPLKNVSAIAGLQSIKTLDLTSTQITD 127
Query: 435 LEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAK 494
+ + S V LD+N++ + + + GLT LQ+L + +N V++ L N++K
Sbjct: 128 VTPLAGLSNLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGNNQVNDLTPLANLSK 180
Query: 495 F 495
Sbjct: 181 L 181
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 377 HKLLRMQLKPGQESELCHIVHID--TSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAP 434
+ L+ ++LK Q ++L + ++ T L L G+ L+ GL + + + +
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTKITELE-LSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121
Query: 435 LEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAK 494
+ + S V LD+N++ + + + GLT LQ+L + + VS+ L N++K
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGNAQVSDLTPLANLSK 174
Query: 495 F 495
Sbjct: 175 L 175
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 171 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 227
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 153 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 171 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 227
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 171 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 227
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 153 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 151 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 207
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 173 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 229
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 150 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 206
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I+ +V + GLT+LQ LYLS N +S+ L + +LF+
Sbjct: 148 SRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 204
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 444 STVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502
S + +LD L D+ I +V + LT+LQ LYLS N +S+ LR + +LF+
Sbjct: 151 SRLTKLDTLSLEDNQ--IRRIVPLARLTKLQNLYLSKNHISDLRALRGLKNLDVLELFS 207
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 405 LFGDQLRTYEKFFGLLAQRFCQINKMY---VAPLEQIFRESYSTVHRLDINKLRDDVCVI 461
L +Q+ GL A ++N+ ++P+ + +Y T++ N + D
Sbjct: 268 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY---FNNISD----- 319
Query: 462 NVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKF 495
+ ++ LT+LQ L+ S+N VS+ L N+
Sbjct: 320 --ISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 351
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 405 LFGDQLRTYEKFFGLLAQRFCQINKMY---VAPLEQIFRESYSTVHRLDINKLRDDVCVI 461
L +Q+ GL A ++N+ ++P+ + +Y T++ N + D
Sbjct: 267 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY---FNNISD----- 318
Query: 462 NVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKF 495
+ ++ LT+LQ L+ S+N VS+ L N+
Sbjct: 319 --ISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,036,968
Number of Sequences: 62578
Number of extensions: 530008
Number of successful extensions: 1209
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 20
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)