Query psy7791
Match_columns 551
No_of_seqs 140 out of 577
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 18:56:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vso_E Eukaryotic initiation f 100.0 2.1E-40 7.3E-45 338.0 18.6 228 23-255 4-283 (284)
2 1h2v_C 80 kDa nuclear CAP bind 100.0 2.1E-37 7.3E-42 352.1 28.5 386 56-537 7-439 (771)
3 1hu3_A EIF4GII; heat repeat, t 100.0 6.7E-36 2.3E-40 301.1 17.1 194 52-257 6-244 (260)
4 3rk6_A Polyadenylate-binding p 100.0 1.8E-28 6.3E-33 243.1 12.4 188 55-250 17-234 (234)
5 2i2o_A EIF4G-like protein; pro 99.8 1.5E-20 5E-25 185.2 12.7 154 92-257 39-211 (224)
6 1uw4_B UPF2, regulator of nons 99.3 1.9E-10 6.4E-15 114.2 19.2 186 59-255 6-221 (248)
7 4gmj_A CCR4-NOT transcription 94.7 3.2 0.00011 40.3 19.5 187 55-254 5-206 (229)
8 3pev_B Nucleoporin GLE1; RECA, 94.0 1.9 6.4E-05 43.6 16.8 201 51-260 38-295 (297)
9 4b89_A General negative regula 93.8 1 3.5E-05 44.3 14.0 189 55-256 32-231 (249)
10 1ug3_A EIF4GI, eukaryotic prot 91.2 0.24 8.1E-06 50.9 5.9 141 367-548 22-164 (339)
11 3l6a_A Eukaryotic translation 88.4 0.51 1.7E-05 49.1 5.8 138 367-548 23-161 (364)
12 1hu3_A EIF4GII; heat repeat, t 85.4 1 3.5E-05 44.4 5.9 53 367-426 22-75 (260)
13 2rg8_A Programmed cell death p 83.1 1.3 4.4E-05 40.9 5.0 106 367-513 21-127 (165)
14 2i2o_A EIF4G-like protein; pro 74.1 1.2 4E-05 43.2 1.8 74 390-502 37-116 (224)
15 2nsz_A Programmed cell death p 70.8 3.2 0.00011 36.5 3.8 106 367-512 18-125 (129)
16 2ion_A PDCD4, programmed cell 70.1 3.7 0.00013 37.3 4.1 107 367-513 20-128 (152)
17 2vso_E Eukaryotic initiation f 68.0 4.8 0.00017 40.0 4.8 63 357-426 35-105 (284)
18 3rk6_A Polyadenylate-binding p 63.4 3.2 0.00011 40.4 2.4 98 369-502 34-141 (234)
19 2zu6_B Programmed cell death p 63.4 8.6 0.0003 38.9 5.7 106 368-514 15-121 (307)
20 3eiq_C Programmed cell death p 56.7 10 0.00035 39.2 4.9 117 357-514 52-172 (358)
21 1h2v_C 80 kDa nuclear CAP bind 55.1 10 0.00034 43.3 4.9 85 389-514 46-131 (771)
22 3eiq_C Programmed cell death p 37.4 26 0.00091 36.1 4.4 107 367-513 228-336 (358)
23 1x5b_A Signal transducing adap 36.4 91 0.0031 28.2 7.4 90 151-255 35-128 (163)
24 2zu6_B Programmed cell death p 33.8 28 0.00095 35.1 3.8 106 368-513 178-285 (307)
25 3g2s_A C-terminal fragment of 33.6 82 0.0028 28.2 6.5 96 149-258 29-132 (149)
26 1mhq_A ADP-ribosylation factor 30.7 1.1E+02 0.0036 27.3 6.7 93 150-256 20-120 (148)
27 2kpa_A ARNO(375-400); hydrolas 30.3 9.3 0.00032 24.4 -0.3 12 412-423 2-13 (26)
28 1juq_A ADP-ribosylation factor 27.7 1.1E+02 0.0037 28.0 6.4 92 150-255 32-131 (171)
29 2e9x_C GINS complex subunit 3; 23.6 56 0.0019 31.2 3.7 42 411-452 113-158 (219)
30 3k6g_A Telomeric repeat-bindin 21.4 64 0.0022 27.3 3.1 71 170-242 14-96 (111)
31 2vxg_A LD41624, GE-1, CG6181-P 20.2 3.6E+02 0.012 23.7 8.1 95 151-251 31-136 (139)
No 1
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=2.1e-40 Score=337.96 Aligned_cols=228 Identities=15% Similarity=0.290 Sum_probs=179.3
Q ss_pred CCCCcccChHHhhhhhhhcCCcchhHHHHhhHHHHHHHHhHHhhhcCCCcHHHHHHHHHHHHhh-----hh---hhHHHH
Q psy7791 23 KTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENII-----RG---RGLLTR 94 (551)
Q Consensus 23 ~~~~kYVPP~~~r~~~~~~~d~~see~Q~~~w~~L~r~I~glLNKLs~~Ni~~i~~eL~~~n~~-----~g---r~ll~~ 94 (551)
+++|+||||+++++++.+..+.++. |+..|++++|+|+|+|||||++||+.|+.+|+..++. ++ ++ +++
T Consensus 4 ~s~~~w~P~~~~~~~~~~~~~~~~~--~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~-vi~ 80 (284)
T 2vso_E 4 PSANRWVPKFKSKKTEKKLAPDGKT--ELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKA-VIE 80 (284)
T ss_dssp ---CCCCCC---------------C--CCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHH-HHH
T ss_pred CCCCCCCChhhhcccccccCCCccc--ccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHH-HHH
Confidence 5789999999887754332222211 4567999999999999999999999999999998873 33 44 568
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCC-c--------------hHHHHHHHHHHHHHHHHhc-----------------
Q psy7791 95 TILQAQAASPTFTNVYAALVDIINSKFP-S--------------IGELLLNRCIQQFKRSFKR----------------- 142 (551)
Q Consensus 95 ~Il~~~~~~~~~~~vyAaLia~L~~~~p-e--------------vG~~ll~~lv~~F~~~~~~----------------- 142 (551)
.|++.++.+|+|+++||.||+.|+..+| + |+.+|+++|+.+|++.|..
T Consensus 81 ~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~ 160 (284)
T 2vso_E 81 QIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMS 160 (284)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhh
Confidence 8999999999999999999999998763 3 4468899999999997742
Q ss_pred -------cCccchhhHHHHHHHHHhcccccHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHhhhhhhcccCccccchh
Q psy7791 143 -------NDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVE----TPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWIS 211 (551)
Q Consensus 143 -------~d~k~~~n~~~fia~Lynf~Vv~~~li~dii~~Lle----~~te~~iEll~~lL~~~G~~LR~~dG~~L~~~~ 211 (551)
..++++.|+++||||||+++|+++.+|++||+.|++ .|+|++||++|.+|++||.+|+++++..=..
T Consensus 161 ~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~-- 238 (284)
T 2vso_E 161 EEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQA-- 238 (284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccccccccc--
Confidence 124679999999999999999999999999999997 8999999999999999988888776532111
Q ss_pred hhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHc-CCc
Q psy7791 212 SIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKD-NFK 255 (551)
Q Consensus 212 ~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l~dLr~n-~~k 255 (551)
....+..++.||++++.+.+++++++|+||||++|++||+| +|+
T Consensus 239 ~~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~ 283 (284)
T 2vso_E 239 TLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWN 283 (284)
T ss_dssp --CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC
T ss_pred chhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCC
Confidence 11126789999999999999999999999999999999997 996
No 2
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=100.00 E-value=2.1e-37 Score=352.10 Aligned_cols=386 Identities=14% Similarity=0.193 Sum_probs=310.8
Q ss_pred HHHHHHhHHhhhcCC---CcHHHHHHHHHHH---HhhhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHccCCchHHHHH
Q psy7791 56 TLKKSIHGSVNKVNT---GNIGIIARKLFQE---NIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLL 129 (551)
Q Consensus 56 ~L~r~I~glLNKLs~---~Ni~~i~~eL~~~---n~~~gr~ll~~~Il~~~~~~~~~~~vyAaLia~L~~~~pevG~~ll 129 (551)
.++.+|+++|-||++ +|+..-+.+|+.. +..+|||.+++++++.+...|..+++||+||+.||++.|+||+.++
T Consensus 7 ~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv 86 (771)
T 1h2v_C 7 ETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFV 86 (771)
T ss_dssp ---CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHH
Confidence 567889999999999 7777777766655 8889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCccchhhHHHHHHHHHhcccccHHHHHHHHHHHhcCCCCCcHHH---------HHHHHHHhhhhhh
Q psy7791 130 NRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFS---------LEPYSKHKLHHLR 200 (551)
Q Consensus 130 ~~lv~~F~~~~~~~d~k~~~n~~~fia~Lynf~Vv~~~li~dii~~Lle~~te~~iEl---------l~~lL~~~G~~LR 200 (551)
++++.+|++.++++++..|..+++|||+|+|++|+++..+++++..|++.++++++.. ++..|..|
T Consensus 87 ~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~----- 161 (771)
T 1h2v_C 87 EAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV----- 161 (771)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHH-----
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHH-----
Confidence 9999999999999999999999999999999999999999999999999888766544 88889999
Q ss_pred cccCccccchhhhcchHHHHHHHHHHHhhh-cCCC----------------chhHHHHHHHHHHHHHHcCCcCCCCcccc
Q psy7791 201 SLMCMPLWWISSIQSFQALESFFSTDVYNS-SKGK----------------LEKRVQYMIEVLAQVRKDNFKDFPDVIED 263 (551)
Q Consensus 201 ~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l-~~~~----------------~ssR~~fmie~l~dLr~n~~k~~~~~~~~ 263 (551)
|..|.+.. +.+++.++++++..+ ++++ ...++.+|++.|..+|+|+|+. |.++..
T Consensus 162 ---G~~L~e~~----~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~-~~iprp 233 (771)
T 1h2v_C 162 ---GKELYEKK----DAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQE-RHILRP 233 (771)
T ss_dssp ---HHHHHHHH----HHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCC-SCCCCG
T ss_pred ---HHHHHhcC----HHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCC-cCCCch
Confidence 88888877 889999999999976 4433 2579999999999999999974 434333
Q ss_pred cCCCC--cCCcceeEEe-cCCCCChhhhhccccCChhhhhhhhhhhhccccccCCCCCCCCCCCCCcccchhhhhhhhhh
Q psy7791 264 LDLVP--EEDKFTHLMT-LDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEGE 340 (551)
Q Consensus 264 l~~v~--~~~~~~~~~~-l~~~~~~~~~L~~~~~d~~~~~~e~~~~~gkwwivG~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (551)
.+.++ ..++.+|.+. +..+...+ ++.|. |.+.+--|.|....++ +
T Consensus 234 ~~~f~~~l~d~~~H~lp~~~~p~~~~--------~~~yp-----~p~~~f~if~~~d~~e------------------~- 281 (771)
T 1h2v_C 234 YLAFDSILCEALQHNLPPFTPPPHTE--------DSVYP-----MPRVIFRMFDYTDDPE------------------G- 281 (771)
T ss_dssp GGGGTTTCCGGGCBCCCCCCCCCCCT--------TCCCC-----CCCBCCCCCCGGGCTT------------------S-
T ss_pred hhhccccccccccCCCCCCCCCCCcc--------cccCC-----ccceeeeccCCccccc------------------c-
Confidence 32232 2346667654 22111100 00010 1122223333222110 0
Q ss_pred ccchhhhhhhhccccchhhhhhhhhcccCC--CHHHHHHHHHccCCCCCCccchheeeeecccccccccccc-------c
Q psy7791 341 KENKETIIDNTETNLVALRRTIYLTIHSSL--DFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQL-------R 411 (551)
Q Consensus 341 ~~~~~~l~d~~~mn~td~RR~If~~ImSS~--d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qE-------k 411 (551)
..+-+.+..+ .-++|.+|+.||++. +..||+|+|+++. .+++.++++|+ |+| |.+| +
T Consensus 282 ----~~~p~~~~id-r~l~re~ildIi~~~~~nrkecA~~Ll~l~--~~~~~~~e~~i-VE~------i~~el~~LP~p~ 347 (771)
T 1h2v_C 282 ----PVMPGSHSVE-RFVIEENLHCIIKSHWKERKTCAAQLVSYP--GKNKIPLNYHI-VEV------IFAELFQLPAPP 347 (771)
T ss_dssp ----SCCCCTTSHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSSCCCHHHHH-HHH------HHHHHTCSSCCS
T ss_pred ----ccCCCcchHH-HHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCCcccHHHHH-HHH------HHHHHhcCCCCc
Confidence 0022233444 668999999999999 7799999999975 45677899999 999 9999 9
Q ss_pred cchhhHHHHHHHHhhcc-hhhHHHHHHHHHHHhhhhhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHh
Q psy7791 412 TYEKFFGLLAQRFCQIN-KMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLR 490 (551)
Q Consensus 412 tyNpyY~~la~rlC~~~-~~~~~tfq~~fwd~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 490 (551)
+|..||+.|+.+||+.+ +.|...|..||...|+.+++++++. ++
T Consensus 348 ~~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~-----------------------------------~~ 392 (771)
T 1h2v_C 348 HIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTC-----------------------------------VD 392 (771)
T ss_dssp SCHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHH-----------------------------------HH
T ss_pred hHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHH-----------------------------------HH
Confidence 99999999999999999 7899999999999999999999876 99
Q ss_pred hHHHHHHHHHhhC--ccccccccceecCccccCcchHHHHHHHHHHHHH
Q psy7791 491 NVAKFFAHQLFTD--AIGWHVLSCIHLNEEETTSSGRIFIKILFQELSE 537 (551)
Q Consensus 491 Nlak~~a~Ll~~~--~l~l~vLk~i~~~e~~t~~~~riF~k~Lf~el~~ 537 (551)
+++.+|||++++. ..+|+.+..+ +++++++++|+|+|.+|+.++.
T Consensus 393 Rf~dwFShhLSNF~f~W~W~eW~~~--~e~~~~~p~r~Fik~ll~k~~R 439 (771)
T 1h2v_C 393 RFINWFSHHLSNFQFRWSWEDWSDC--LSQDPESPKPKFVREVLEKCMR 439 (771)
T ss_dssp HHHHHHHHHHTTTTTCCCGGGGGGG--TTSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcCccHHHhHHh--hcCCccCcHHHHHHHHHHHHHh
Confidence 9999999999999 6888877665 6778888999999999999985
No 3
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=6.7e-36 Score=301.11 Aligned_cols=194 Identities=18% Similarity=0.292 Sum_probs=170.9
Q ss_pred hhHHHHHHHHhHHhhhcCCCcHHHHHHHHHHHHhhh---hhhHHHHHHHHHHhcCCchHHHHHHHHHHHHc-cCCc----
Q psy7791 52 ISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIR---GRGLLTRTILQAQAASPTFTNVYAALVDIINS-KFPS---- 123 (551)
Q Consensus 52 ~~w~~L~r~I~glLNKLs~~Ni~~i~~eL~~~n~~~---gr~ll~~~Il~~~~~~~~~~~vyAaLia~L~~-~~pe---- 123 (551)
..|++|+|+|+|+|||||++||+.|+.+|+..++.+ .++ +++.|++.++.+|+|+++||.||+.|+. .+|.
T Consensus 6 ~~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~-vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~ 84 (260)
T 1hu3_A 6 IKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKG-VIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKP 84 (260)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHH-HHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-----
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCC
Confidence 348999999999999999999999999999888753 455 4688999999999999999999999997 4654
Q ss_pred -----hHHHHHHHHHHHHHHHHhcc--------------------------------CccchhhHHHHHHHHHhcccccH
Q psy7791 124 -----IGELLLNRCIQQFKRSFKRN--------------------------------DKALCINSVTFIAHLVNQQVAHE 166 (551)
Q Consensus 124 -----vG~~ll~~lv~~F~~~~~~~--------------------------------d~k~~~n~~~fia~Lynf~Vv~~ 166 (551)
|+.+|+++|+.+|++.+..+ .++++.|+++||||||+++|+++
T Consensus 85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~ 164 (260)
T 1hu3_A 85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE 164 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence 78999999999999988531 13568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q psy7791 167 IIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVL 246 (551)
Q Consensus 167 ~li~dii~~Lle~~te~~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l 246 (551)
.+|++||+.|+++|+|++||++|.+|++||.+|++++ . +..++.+|++++.+++++++++|+||||+++
T Consensus 165 ~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~~~-------~----~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l 233 (260)
T 1hu3_A 165 AIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEK-------A----KPRMDQYFNQMEKIVKERKTSSRIRFMLQDV 233 (260)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCTT-------T----HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhCcc-------c----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999966665532 2 4678899999999999999999999999999
Q ss_pred HHHHHcCCcCC
Q psy7791 247 AQVRKDNFKDF 257 (551)
Q Consensus 247 ~dLr~n~~k~~ 257 (551)
++||+|+|+..
T Consensus 234 ~dLR~~~W~~~ 244 (260)
T 1hu3_A 234 IDLRLCNWVSR 244 (260)
T ss_dssp HHHHHTTTCC-
T ss_pred HHHHHcCCCCC
Confidence 99999999864
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=243.10 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=162.5
Q ss_pred HHHHHHHhHHhhhcC--CCcHHHHHHHHHHH---Hhhhhh--hHHHHHHHHHHhcCCchHHHHHHHHHHHHccC---C--
Q psy7791 55 ETLKKSIHGSVNKVN--TGNIGIIARKLFQE---NIIRGR--GLLTRTILQAQAASPTFTNVYAALVDIINSKF---P-- 122 (551)
Q Consensus 55 ~~L~r~I~glLNKLs--~~Ni~~i~~eL~~~---n~~~gr--~ll~~~Il~~~~~~~~~~~vyAaLia~L~~~~---p-- 122 (551)
+.|.|+|+|+||||| ++||+.++.++... ++..++ +.+++.|++.++.+|+|+++||.||+.|+..+ |
T Consensus 17 ~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~~~ 96 (234)
T 3rk6_A 17 STLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQS 96 (234)
T ss_dssp -CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCCCch
Confidence 589999999999999 99999999987765 554444 45889999999999999999999999999755 4
Q ss_pred -chHHHHHHHHHHHHHHHHh--ccC---ccchhhHHHHHHHHHhc--------ccccHHHHHHHHHHHh----cCCCCCc
Q psy7791 123 -SIGELLLNRCIQQFKRSFK--RND---KALCINSVTFIAHLVNQ--------QVAHEIIVLEILTLLV----ETPTNDS 184 (551)
Q Consensus 123 -evG~~ll~~lv~~F~~~~~--~~d---~k~~~n~~~fia~Lynf--------~Vv~~~li~dii~~Ll----e~~te~~ 184 (551)
.|+.+|+.+|+.+|++.++ +.| ++++.++++||||||++ +|+++.++++|+..|+ +.|+|++
T Consensus 97 ~~Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~~p~ee~ 176 (234)
T 3rk6_A 97 GNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDN 176 (234)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHHHHHHHSCCHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHhhhccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHhccCCCChHH
Confidence 3899999999999998773 344 57899999999999999 8999999999988765 4699999
Q ss_pred HHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q psy7791 185 DFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVR 250 (551)
Q Consensus 185 iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l~dLr 250 (551)
||++|.+|++| |..|.+......+..++.+|++++.+++++++++|+||||+++++||
T Consensus 177 vE~l~~lL~tv--------G~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dlieLR 234 (234)
T 3rk6_A 177 LICAVKLLKLT--------GSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELR 234 (234)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH--------HHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 99999999999 77777631112267899999999999999999999999999999997
No 5
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=99.83 E-value=1.5e-20 Score=185.22 Aligned_cols=154 Identities=15% Similarity=0.124 Sum_probs=133.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHccC------CchHHHHHHHHHHHHHHHH--hccCccchhhHHHHHHHHHhc--
Q psy7791 92 LTRTILQAQAASPTFTNVYAALVDIINSKF------PSIGELLLNRCIQQFKRSF--KRNDKALCINSVTFIAHLVNQ-- 161 (551)
Q Consensus 92 l~~~Il~~~~~~~~~~~vyAaLia~L~~~~------pevG~~ll~~lv~~F~~~~--~~~d~k~~~n~~~fia~Lynf-- 161 (551)
+++.|++.++..|+|+.+||.||..|.... +-|-..|+.+|+..|++.- +...+++..++++|||+||+.
T Consensus 39 vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~~~~k~r~lG~i~FIgELf~~l~ 118 (224)
T 2i2o_A 39 VSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRSTQEWVCLVSFICNIFDYLK 118 (224)
T ss_dssp HHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHChHHHHHHHHHHHhHHHHHHHHHHhHhc
Confidence 558888888999999999999999887542 3488899999999998732 223477899999999999999
Q ss_pred --cc--cc-HHHHHHHHHHHhcC---CCCCcHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHHHHh-hhcC
Q psy7791 162 --QV--AH-EIIVLEILTLLVET---PTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVY-NSSK 232 (551)
Q Consensus 162 --~V--v~-~~li~dii~~Lle~---~te~~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~lr~-~l~~ 232 (551)
++ +. +.+|++|++.|++. |+|++||++|.+|++| |..|.... +..++.+|.++++ +++.
T Consensus 119 ~~~~~~~~l~~i~~~cl~~Ll~~~~~p~Ee~lEcl~~LL~tv--------G~~Ld~~~----~~~md~~f~~l~~~l~~~ 186 (224)
T 2i2o_A 119 VNNMPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRI--------GDQLEKMN----VQLMDELFNLLRDGFLLQ 186 (224)
T ss_dssp BTTBCCGGGHHHHHHHHHHHTSHHHHTSHHHHHHHHHHHHHH--------HHHHHHHC----HHHHHHHHHHHHHHHHHC
T ss_pred ccCcchHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH--------HHHHHccc----HHHHHHHHHHHHHHHhcC
Confidence 85 44 67999999999975 7899999999999999 88888877 7889999999999 6888
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcCC
Q psy7791 233 GKLEKRVQYMIEVLAQVRKDNFKDF 257 (551)
Q Consensus 233 ~~~ssR~~fmie~l~dLr~n~~k~~ 257 (551)
.++++|+||||+++++||+|+|+..
T Consensus 187 ~~ls~RiRfml~dlieLR~~~W~~~ 211 (224)
T 2i2o_A 187 EDLSSMGRLLLLEILEFRAGGWKLS 211 (224)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 8999999999999999999999853
No 6
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.27 E-value=1.9e-10 Score=114.21 Aligned_cols=186 Identities=10% Similarity=0.090 Sum_probs=140.2
Q ss_pred HHHhHHh-hhcCCCcHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q psy7791 59 KSIHGSV-NKVNTGNIGIIARKLFQENIIRG--RGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQ 135 (551)
Q Consensus 59 r~I~glL-NKLs~~Ni~~i~~eL~~~n~~~g--r~ll~~~Il~~~~~~~~~~~vyAaLia~L~~~~pevG~~ll~~lv~~ 135 (551)
.-|+.++ -.|+..|+..+++.|-+.+-... ++.+.+.+.+.....=+=++..|.+++.|...-|+||-.++-.+.+.
T Consensus 6 ~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE~ 85 (248)
T 1uw4_B 6 EYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLED 85 (248)
T ss_dssp HHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHHHHHHH
Confidence 4566666 67778999999998887776332 24444554443322223477899999999999999999999999999
Q ss_pred HHHHHhccC---ccchhhHHHHHHHHHhcccccHHHHHHHHHHHhc--C-----CCCCc-------HHHHHHHHHHhhhh
Q psy7791 136 FKRSFKRND---KALCINSVTFIAHLVNQQVAHEIIVLEILTLLVE--T-----PTNDS-------DFSLEPYSKHKLHH 198 (551)
Q Consensus 136 F~~~~~~~d---~k~~~n~~~fia~Lynf~Vv~~~li~dii~~Lle--~-----~te~~-------iEll~~lL~~~G~~ 198 (551)
.+.+...|| ..+-...++|||||||++|+++.+|++++-.|+. . +++.| |.++|.+|.+|
T Consensus 86 Ir~gLE~n~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tc--- 162 (248)
T 1uw4_B 86 IRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTC--- 162 (248)
T ss_dssp HHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHH---
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHHHH---
Confidence 999999887 3456778999999999999999999999999985 2 25567 99999999999
Q ss_pred hhcccCccccchhhhcchHHHHHHHHHHHhhh----------cCCCchhHHHHHHHHHHHHHHcCCc
Q psy7791 199 LRSLMCMPLWWISSIQSFQALESFFSTDVYNS----------SKGKLEKRVQYMIEVLAQVRKDNFK 255 (551)
Q Consensus 199 LR~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l----------~~~~~ssR~~fmie~l~dLr~n~~k 255 (551)
|..+..-. . +.-++.++.-++... ++..++.+++||++++++.=+-+++
T Consensus 163 -----g~~f~~~~--~-~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~~~lrp~~~ 221 (248)
T 1uw4_B 163 -----GQYFDRGS--S-KRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIK 221 (248)
T ss_dssp -----GGGCSSHH--H-HHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTTCC
T ss_pred -----HHHhcchh--h-HHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHHhcccCc
Confidence 66555422 1 344666666666663 2456899999999999998443454
No 7
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=94.70 E-value=3.2 Score=40.31 Aligned_cols=187 Identities=13% Similarity=0.164 Sum_probs=118.7
Q ss_pred HHHHHHHhHHhhhcCCCcHHHHHHHHHHHHhhhhhhHHHHHHHH-HHhcCCchHHHHHHHHHHHHccCCchHHHHHHHHH
Q psy7791 55 ETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQ-AQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133 (551)
Q Consensus 55 ~~L~r~I~glLNKLs~~Ni~~i~~eL~~~n~~~gr~ll~~~Il~-~~~~~~~~~~vyAaLia~L~~~~pevG~~ll~~lv 133 (551)
+.++.+|.-++|.+|++|+++-+.|+-..-...--.-++.-++. ....+|++-.+|+.|+..++. |.+-+.+++...
T Consensus 5 e~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~--~~l~~~vl~~T~ 82 (229)
T 4gmj_A 5 ENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKN--PEFNKMVLNETY 82 (229)
T ss_dssp HHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred HHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhCh--HHHHHHHHHHHH
Confidence 46778999999999999999998887654332222345555443 345589999999999999875 456667777666
Q ss_pred HHHHHHHhcc-------CccchhhHHHHHHHHHhcccccHH-HHHHHHHHHhcCCCC------CcHHHHHHHHHHhhhhh
Q psy7791 134 QQFKRSFKRN-------DKALCINSVTFIAHLVNQQVAHEI-IVLEILTLLVETPTN------DSDFSLEPYSKHKLHHL 199 (551)
Q Consensus 134 ~~F~~~~~~~-------d~k~~~n~~~fia~Lynf~Vv~~~-li~dii~~Lle~~te------~~iEll~~lL~~~G~~L 199 (551)
.......... ++....|+-.+||.+.--+=..-. --+++=.+|++.... --|-.+|++|..|
T Consensus 83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~---- 158 (229)
T 4gmj_A 83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESS---- 158 (229)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhc----
Confidence 6666555432 234578888888888654322100 011222223332211 1356677888887
Q ss_pred hcccCccccchhhhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHcCC
Q psy7791 200 RSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNF 254 (551)
Q Consensus 200 R~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l~dLr~n~~ 254 (551)
..+.-.+- .+| ....|+.-+.++-+..++.--++|=||.|+.-=+=+.
T Consensus 159 --~~S~iFkP----PNP-W~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~ 206 (229)
T 4gmj_A 159 --IRSVVFRP----PNP-WTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDI 206 (229)
T ss_dssp --TTCTTTST----TCH-HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCG
T ss_pred --ccCCcCCC----CCh-hHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCCh
Confidence 01122322 223 5667999999998888888889999999987443333
No 8
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=93.98 E-value=1.9 Score=43.62 Aligned_cols=201 Identities=17% Similarity=0.207 Sum_probs=120.8
Q ss_pred HhhHHHHHHHHhHHhhhcCCC--cHHHHHHHHHHH-Hhhhh--------hhHHHHHHHHHH----hcCCchHHHHHHHHH
Q psy7791 51 RISWETLKKSIHGSVNKVNTG--NIGIIARKLFQE-NIIRG--------RGLLTRTILQAQ----AASPTFTNVYAALVD 115 (551)
Q Consensus 51 ~~~w~~L~r~I~glLNKLs~~--Ni~~i~~eL~~~-n~~~g--------r~ll~~~Il~~~----~~~~~~~~vyAaLia 115 (551)
+..+..+||+|+..+|.||.+ .+..|+.+|.+. +..++ -..+++.++... ...|...--+|.+++
T Consensus 38 K~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~ 117 (297)
T 3pev_B 38 RNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTL 117 (297)
T ss_dssp HHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHH
Confidence 456889999999999999855 555666666543 22111 124566666532 235666667889988
Q ss_pred HHHccCCchHHHHHHHHHHH---------------HHH--HHhcc-C---------ccchhhHHHHHHHHHhcc------
Q psy7791 116 IINSKFPSIGELLLNRCIQQ---------------FKR--SFKRN-D---------KALCINSVTFIAHLVNQQ------ 162 (551)
Q Consensus 116 ~L~~~~pevG~~ll~~lv~~---------------F~~--~~~~~-d---------~k~~~n~~~fia~Lynf~------ 162 (551)
.|-...|++|..|+.++... +++ +|++. | -++..+++++.|.+..-.
T Consensus 118 ~l~~~~p~~~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~ 197 (297)
T 3pev_B 118 YLLVQFPELQELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFI 197 (297)
T ss_dssp HHHHHSTTHHHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTT
T ss_pred HHHHhCccHHHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCccccc
Confidence 88888899999888776543 111 12222 2 256888888888776432
Q ss_pred -----cccHHHHHHHHHHHhcCCCCC-c---HHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHHHHhhhcCC
Q psy7791 163 -----VAHEIIVLEILTLLVETPTND-S---DFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKG 233 (551)
Q Consensus 163 -----Vv~~~li~dii~~Lle~~te~-~---iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l~~~ 233 (551)
-....-.-.-+..++..+... . ..++..+|+.+|++|-.-=|.+....- .....++..++.+. ..
T Consensus 198 ~~~~~p~~~~~~W~wLArilN~~p~~~t~t~~~vL~~~Le~ag~~l~~~Yg~Qf~KlL----~~i~~~~~~~l~~~--~~ 271 (297)
T 3pev_B 198 TTTSHPFPIALSWHILARICNTPLNLITNTHFVILGSWWDAAAVQFLQAYGNQASKLL----ILIGEELTSRMAEK--KY 271 (297)
T ss_dssp TTSCCSSCTHHHHHHHHHHHTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH----HHHHTHHHHHTGGG--CC
T ss_pred ccCCCCCCchHHHHHHHHHhCCCHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhccc--CC
Confidence 122345566666677654443 2 226778999998887777777666544 33333444443321 01
Q ss_pred CchhHHHHHHHHHHHHHHcCCcCCCCc
Q psy7791 234 KLEKRVQYMIEVLAQVRKDNFKDFPDV 260 (551)
Q Consensus 234 ~~ssR~~fmie~l~dLr~n~~k~~~~~ 260 (551)
---.|++-++|.. .+++++..|++
T Consensus 272 ~~a~RL~~l~e~~---~~~~~~~~~~~ 295 (297)
T 3pev_B 272 VGAARLRILLEAW---QNNNMESFPEM 295 (297)
T ss_dssp HHHHHHHHHHHHH---HTTCCCCCCCC
T ss_pred ccHHHHHHHHHHH---HHhCcccccCC
Confidence 1134555555543 33447776654
No 9
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=93.82 E-value=1 Score=44.28 Aligned_cols=189 Identities=11% Similarity=0.069 Sum_probs=116.4
Q ss_pred HHHHHHHhHHhhhcCCCcHHHHHHHHHHHHhhhhhhHHHHHHH-HHHhcCCchHHHHHHHHHHHHccCCchHHHHHHHHH
Q psy7791 55 ETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTIL-QAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133 (551)
Q Consensus 55 ~~L~r~I~glLNKLs~~Ni~~i~~eL~~~n~~~gr~ll~~~Il-~~~~~~~~~~~vyAaLia~L~~~~pevG~~ll~~lv 133 (551)
+.++.+|.-++|.+|++|++.=+.|+-..-...--.-++.-++ +.+..+|+|-.+|+.|+..++.. .+-+.+++...
T Consensus 32 ~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~--~L~~~vl~~T~ 109 (249)
T 4b89_A 32 KDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG--LLHQFMVNVTL 109 (249)
T ss_dssp HHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH--HHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH--HHHHHHHHHHH
Confidence 3677899999999999999999888765433222234555544 34566899999999999999854 33344444443
Q ss_pred HHHHHHHhc-----cCccchhhHHHHHHHHHhcccccHH-HHHHHHHHHhcCCCCC----cHHHHHHHHHHhhhhhhccc
Q psy7791 134 QQFKRSFKR-----NDKALCINSVTFIAHLVNQQVAHEI-IVLEILTLLVETPTND----SDFSLEPYSKHKLHHLRSLM 203 (551)
Q Consensus 134 ~~F~~~~~~-----~d~k~~~n~~~fia~Lynf~Vv~~~-li~dii~~Lle~~te~----~iEll~~lL~~~G~~LR~~d 203 (551)
......... .++....|+-.+||.+.--+=-.-. --+++=.+|++..... -|-.+|++|..|- .
T Consensus 110 ~~i~~LL~~~~i~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k------~ 183 (249)
T 4b89_A 110 RQLFVLLSTKDEQAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRAS------E 183 (249)
T ss_dssp HHHHHHHTBSCGGGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGT------T
T ss_pred HHHHHHhhhcccChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcc------c
Confidence 333333222 3456678888888888643321100 0122223333332222 3555677777760 0
Q ss_pred CccccchhhhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHcCCcC
Q psy7791 204 CMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKD 256 (551)
Q Consensus 204 G~~L~~~~~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l~dLr~n~~k~ 256 (551)
+.-.+- .+| ....|+.-+.++-+...+-.-++|-||.|+.-=+=+.++
T Consensus 184 SkiFkP----PNP-Wt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~ 231 (249)
T 4b89_A 184 SKIFKP----PNP-WTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKS 231 (249)
T ss_dssp CSSSST----TCH-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCccCC----CCc-hHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCChHh
Confidence 122222 223 666799999998887888889999999998754444433
No 10
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=91.16 E-value=0.24 Score=50.94 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=103.0
Q ss_pred ccCCCHHHHHHHHHccCCCCCCccchheeeeecccccccccccc-ccchhhHHHHHHHHhhcchhhHHHHHHHHHHHhhh
Q psy7791 367 HSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQL-RTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYST 445 (551)
Q Consensus 367 mSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qE-ktyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~~ 445 (551)
+++-|..||+.=+-.|+.+. ...+++..+ |.. ++.- ...-..=+.|...|++..---...|...|-..+..
T Consensus 22 ~~~~d~~Ea~~ci~el~~p~-~~~~~v~~~-i~~------~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 22 LHLNDMKEAVQCVQELASPS-LLFIFVRHG-VES------TLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHCCHHHHHHHHHTTCCGG-GHHHHHHHH-HHH------HTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHcCCcc-cHHHHHHHH-HHH------HhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999988654 677888887 776 4432 23445555566666665555677888999999998
Q ss_pred hhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCcccc-ccccceecCccccCcch
Q psy7791 446 VHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGW-HVLSCIHLNEEETTSSG 524 (551)
Q Consensus 446 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l-~vLk~i~~~e~~t~~~~ 524 (551)
++.+..+- +.--..+|+|.|.++..|.+|+ +++..+- ..+......
T Consensus 94 l~Dl~lDi--------------------------------P~a~~~La~~v~~~i~~g~l~~~~l~~~~~-~~l~~~g~~ 140 (339)
T 1ug3_A 94 AEDMEIDI--------------------------------PHVWLYLAELVTPILQEGGVPMGELFREIT-KPLRPLGKA 140 (339)
T ss_dssp HHHHTTTC--------------------------------TTHHHHHHHHHGGGGSTTSCCHHHHHHHHT-TTHHHHTCH
T ss_pred ChHhhcCc--------------------------------cchHHHHHHHHHHHHHCCCCCHHHHHHHHH-HhhhccchH
Confidence 88776432 4448899999999999999999 6655332 211222346
Q ss_pred HHHHHHHHHHHHHHhcHHHHhhhh
Q psy7791 525 RIFIKILFQELSEYMGLSKLNQKI 548 (551)
Q Consensus 525 riF~k~Lf~el~~~lg~~~l~~~l 548 (551)
.-|+.-+|+.+..+.|.+.+.+.+
T Consensus 141 ~~fl~~vl~~l~~~~g~~~l~~~~ 164 (339)
T 1ug3_A 141 ASLLLEILGLLCKSMGPKKVGTLW 164 (339)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHH
Confidence 789999999999999999887654
No 11
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=88.44 E-value=0.51 Score=49.10 Aligned_cols=138 Identities=15% Similarity=0.080 Sum_probs=98.4
Q ss_pred ccCCCHHHHHHHHHccCCCCCCccchheeeeecccccccccccc-ccchhhHHHHHHHHhhcchhhHHHHHHHHHHHhhh
Q psy7791 367 HSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQL-RTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYST 445 (551)
Q Consensus 367 mSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qE-ktyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~~ 445 (551)
.++-|..||..-+-.|+.+.....+++..+ |.+ .+.- ...-..-+.|...||...---...|...|-..+..
T Consensus 23 ~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~-i~~------aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 23 LNSGNANEAVNGVREMRAPKHFLPEMLSKV-IIL------SLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHCCHHHHHHHHHHHTCCGGGHHHHHHHH-HHH------HHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHhCCchhhHHHHHHHH-HHH------HHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 567899999999999988766677888888 776 4422 22334455555666765555678888899999988
Q ss_pred hhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCccccccccceecCccccCcchH
Q psy7791 446 VHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGR 525 (551)
Q Consensus 446 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~i~~~e~~t~~~~r 525 (551)
++.+..+- ++--..+|+|+|.++..|.+|++.+... ...+. ...
T Consensus 96 l~Dl~iDi--------------------------------P~a~~~la~f~ar~i~~~~l~~~~l~~~--l~~G~--~~~ 139 (364)
T 3l6a_A 96 CPKLEVDI--------------------------------PLVKSYLAQFAARAIISELVSISELAQP--LESGT--HFP 139 (364)
T ss_dssp HHHHHHHC--------------------------------TTHHHHHHHHHHHHHHTTSSCHHHHHHH--HGGGT--TTT
T ss_pred ChHhcccc--------------------------------ccHHHHHHHHHHHHHHcCCCCHHHHHHH--hcccc--hHH
Confidence 88765422 4448899999999999999999866543 12222 234
Q ss_pred HHHHHHHHHHHHHhcHHHHhhhh
Q psy7791 526 IFIKILFQELSEYMGLSKLNQKI 548 (551)
Q Consensus 526 iF~k~Lf~el~~~lg~~~l~~~l 548 (551)
.|+ .+|+.+..+.|.+.+.+.+
T Consensus 140 l~l-~vl~~~~k~~G~~~l~~l~ 161 (364)
T 3l6a_A 140 LFL-LCLQQLAKLQDREWLTELF 161 (364)
T ss_dssp HHH-HHHHHHHHHSCHHHHHHHH
T ss_pred HHH-HHHHHHHHhcCHHHHHHHH
Confidence 555 5679999999988876654
No 12
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=85.39 E-value=1 Score=44.38 Aligned_cols=53 Identities=4% Similarity=0.134 Sum_probs=43.9
Q ss_pred ccCCCHHHHHHHHHccCCCCC-CccchheeeeeccccccccccccccchhhHHHHHHHHhh
Q psy7791 367 HSSLDFEECAHKLLRMQLKPG-QESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQ 426 (551)
Q Consensus 367 mSS~d~~dA~~kLlkL~lk~~-qerEi~~vl~i~C~~~~~~c~qEktyNpyY~~la~rlC~ 426 (551)
+|...|+.-+..|+.+.+... .-+.+++.| ++= +..|.+|.+.||.++..|+.
T Consensus 22 LT~~nf~~i~~ql~~~~i~~~~~l~~vi~~i-f~k------A~~ep~f~~~YA~Lc~~L~~ 75 (260)
T 1hu3_A 22 LTPQMFNQLMKQVSGLTVDTEERLKGVIDLV-FEK------AIDEPSFSVAYANMCRCLVT 75 (260)
T ss_dssp SSCCCHHHHHHHHTTCCCCSHHHHHHHHHHH-HHH------HHHCGGGHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHH------HHcCchHHHHHHHHHHHHHH
Confidence 567888888889988887543 235688888 888 89999999999999999987
No 13
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=83.05 E-value=1.3 Score=40.88 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=78.4
Q ss_pred ccCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccc-cchhhHHHHHHHHhhcchhhHHHHHHHHHHHhhh
Q psy7791 367 HSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR-TYEKFFGLLAQRFCQINKMYVAPLEQIFRESYST 445 (551)
Q Consensus 367 mSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEk-tyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~~ 445 (551)
.++-|..||..-+-.|+.+. ...+++..+ |.. .+.-+ .--..-+.|...||. +---...|+..|-..+..
T Consensus 21 f~~~D~~Ea~~~l~eL~~p~-~~~~~V~~~-I~~------aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ 91 (165)
T 2rg8_A 21 FEHGDTNEVAEMLRDLNLGE-MKSGVPVLA-VSL------ALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 91 (165)
T ss_dssp HHHCCHHHHHHHHHHHTCSG-GGGHHHHHH-HHH------HHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCcc-cHHHHHHHH-HHH------HHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 45779999999998888654 777888888 776 55333 223355566666776 556677888888888888
Q ss_pred hhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCccccccccce
Q psy7791 446 VHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCI 513 (551)
Q Consensus 446 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~i 513 (551)
++.+..+- ++--..+|+|+|.++..+.+|++.+..+
T Consensus 92 ldDl~iDi--------------------------------P~a~~~la~fiarav~d~~l~~~~l~~~ 127 (165)
T 2rg8_A 92 LPELALDT--------------------------------PRAPQLVGQFIARAVGDGILCNTYIDSY 127 (165)
T ss_dssp HHHHHHHC--------------------------------TTHHHHHHHHHHHHHHTTSSCTTHHHHT
T ss_pred Chhhcccc--------------------------------cchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 88765422 4448899999999999999999866644
No 14
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=74.11 E-value=1.2 Score=43.24 Aligned_cols=74 Identities=7% Similarity=0.161 Sum_probs=50.5
Q ss_pred cchheeeeeccccccccccccccchhhHHHHHHHHhhcc------hhhHHHHHHHHHHHhhhhhcccccccccchhhhhh
Q psy7791 390 SELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQIN------KMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINV 463 (551)
Q Consensus 390 rEi~~vl~i~C~~~~~~c~qEktyNpyY~~la~rlC~~~------~~~~~tfq~~fwd~~~~i~~~~~~~~~~~~~~~~~ 463 (551)
.+|+++| ++= +..|.+|.+.||.|+.+|+... ..|+..+-....+-|..-++..
T Consensus 37 ~~vi~lI-feK------Ai~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~------------- 96 (224)
T 2i2o_A 37 EKVSSVI-VDQ------SLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETR------------- 96 (224)
T ss_dssp HHHHHHH-HHH------HTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHH-------------
T ss_pred HHHHHHH-HHH------HHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHChHHHH-------------
Confidence 4789999 988 9999999999999999998752 1244444333333343211100
Q ss_pred hhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhh
Q psy7791 464 VVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502 (551)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~ 502 (551)
...-+|.....+|.|.|+-.
T Consensus 97 -------------------~~~k~r~lG~i~FIgELf~~ 116 (224)
T 2i2o_A 97 -------------------KRSTQEWVCLVSFICNIFDY 116 (224)
T ss_dssp -------------------HHCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHhHHHHHHHHHHhH
Confidence 01156788889999999988
No 15
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=70.79 E-value=3.2 Score=36.47 Aligned_cols=106 Identities=12% Similarity=0.118 Sum_probs=76.1
Q ss_pred ccCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccc--cchhhHHHHHHHHhhcchhhHHHHHHHHHHHhh
Q psy7791 367 HSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR--TYEKFFGLLAQRFCQINKMYVAPLEQIFRESYS 444 (551)
Q Consensus 367 mSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEk--tyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~ 444 (551)
.++-|-.||+.=+-.|+.+ ..-.|++... |.. +..-+ .--.--+-|...|+...---...|+..|-..+.
T Consensus 18 ~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~-i~~------alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~ 89 (129)
T 2nsz_A 18 LLSGDISEAEHCLKELEVP-HFHHELVYEA-IVM------VLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 89 (129)
T ss_dssp HHHCCHHHHHHHHHHHTCG-GGHHHHHHHH-HHH------HHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCC-ccHHHHHHHH-HHH------HHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHh
Confidence 3678999999988888865 5667777777 665 44322 222445556666666555667788888888998
Q ss_pred hhhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCccccccccc
Q psy7791 445 TVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSC 512 (551)
Q Consensus 445 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~ 512 (551)
.++.+..+- +.--..+|+|+|..+..|.||.+.+..
T Consensus 90 ~l~Dl~lDi--------------------------------P~a~~~l~~~v~~ai~~g~l~~~~~~~ 125 (129)
T 2nsz_A 90 EIPDINLDV--------------------------------PHSYSVLERFVEECFQAGIISKQLRDL 125 (129)
T ss_dssp HHHHHHHHS--------------------------------TTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred hChHhhcCc--------------------------------cchHHHHHHHHHHHHHCCCCCHHHHhh
Confidence 888765421 444789999999999999999986543
No 16
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=70.14 E-value=3.7 Score=37.26 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=78.1
Q ss_pred ccCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccc--cchhhHHHHHHHHhhcchhhHHHHHHHHHHHhh
Q psy7791 367 HSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR--TYEKFFGLLAQRFCQINKMYVAPLEQIFRESYS 444 (551)
Q Consensus 367 mSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEk--tyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~ 444 (551)
.++-|-.||+.=|-.|+.+ ..-.|++..+ |.. ++.-+ .--.--+-|...|+...---...|+..|-..+.
T Consensus 20 ~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~-i~~------alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~ 91 (152)
T 2ion_A 20 LLSGDISEAEHCLKELEVP-HFHHELVYEA-IVM------VLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 91 (152)
T ss_dssp HHHCCHHHHHHHHHHHTCG-GGHHHHHHHH-HHH------HHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhCCC-cchHHHHHHH-HHH------HHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 4678999999988888875 5667877777 665 44321 222345555666666555667788888888998
Q ss_pred hhhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCccccccccce
Q psy7791 445 TVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCI 513 (551)
Q Consensus 445 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~i 513 (551)
.++.+..+- +.--..+|+|++..+..|.||++.+..+
T Consensus 92 ~ldDl~lDi--------------------------------P~A~~~la~~v~~ai~~g~l~~~~~~~~ 128 (152)
T 2ion_A 92 EIPDINLDV--------------------------------PHSYSVLERFVEECFQAGIISKQLRDLC 128 (152)
T ss_dssp HHHHHHHHS--------------------------------TTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred hChHhccCc--------------------------------cchHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 888765421 4447899999999999999999988775
No 17
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=67.95 E-value=4.8 Score=40.02 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=48.9
Q ss_pred hhhhhhhhhc--ccCCCHHHHHHHHHccCCC-----CC-CccchheeeeeccccccccccccccchhhHHHHHHHHhh
Q psy7791 357 ALRRTIYLTI--HSSLDFEECAHKLLRMQLK-----PG-QESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQ 426 (551)
Q Consensus 357 d~RR~If~~I--mSS~d~~dA~~kLlkL~lk-----~~-qerEi~~vl~i~C~~~~~~c~qEktyNpyY~~la~rlC~ 426 (551)
.++|+|=-+| +|...|+.-+..|+.+.+. .+ .-+.|++.| ++= +..|.+|.+.||.++.+|+.
T Consensus 35 ~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~I-f~k------A~~ep~fs~~YA~Lc~~l~~ 105 (284)
T 2vso_E 35 EVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQI-FLK------ACDEPHWSSMYAQLCGKVVK 105 (284)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHH-HHH------HHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHH-HHH------HHcCcchHHHHHHHHHHHHH
Confidence 3445444333 6788899999999998763 22 126688999 888 99999999999999999986
No 18
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=63.43 E-value=3.2 Score=40.37 Aligned_cols=98 Identities=11% Similarity=0.167 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHcc---CCCCC-CccchheeeeeccccccccccccccchhhHHHHHHHHhhc------chhhHHHHHHH
Q psy7791 369 SLDFEECAHKLLRM---QLKPG-QESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQI------NKMYVAPLEQI 438 (551)
Q Consensus 369 S~d~~dA~~kLlkL---~lk~~-qerEi~~vl~i~C~~~~~~c~qEktyNpyY~~la~rlC~~------~~~~~~tfq~~ 438 (551)
...|+.-...++.+ ++... .-..+++.| ++= +..|.+|.+-||-+..+|+.. ...|+..+-..
T Consensus 34 p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lI-fek------Ai~ep~fs~~YA~LC~~l~~~l~~~~~~~~Fr~lLL~r 106 (234)
T 3rk6_A 34 PGSFETEIEQFAETLNGCVTTDDALQELVELI-YQQ------ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQR 106 (234)
T ss_dssp GGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHH-HHH------HHSSTTCHHHHHHHHHHHHHHCCCCCTTCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHH------HHhCcccHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 56777777777665 44432 235689999 888 999999999999999999972 11244444444
Q ss_pred HHHHhhhhhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhh
Q psy7791 439 FRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFT 502 (551)
Q Consensus 439 fwd~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~ 502 (551)
...-|+.-.... + ++. ..-+|.....+|+|+|+-.
T Consensus 107 cQ~eFe~~~~~~--~--------------------------~d~-~~k~r~lg~i~FIgELf~~ 141 (234)
T 3rk6_A 107 CRTEYEVKDQAA--K--------------------------GDE-VTRKRFHAFVLFLGELYLN 141 (234)
T ss_dssp HHHHHTTHHHHT--S--------------------------SCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHhh--h--------------------------ccH-HHHHHHHHHHHHHHHHHhh
Confidence 444443322111 1 000 0135677888999999976
No 19
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=63.39 E-value=8.6 Score=38.86 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=78.0
Q ss_pred cCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccc-cchhhHHHHHHHHhhcchhhHHHHHHHHHHHhhhh
Q psy7791 368 SSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR-TYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTV 446 (551)
Q Consensus 368 SS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEk-tyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~~i 446 (551)
++-|..||+.-|-.|+.+. ...+++..+ |.+ ++.-+ ..-..-+.|...||. +---...++..|-..+..+
T Consensus 15 ~~~d~~Ea~~~l~el~~p~-~~~~~v~~~-i~~------aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 15 EHGDTNEVAEMLRDLNLGE-MKSGVPVLA-VSL------ALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHCCHHHHHHHHHTTCCGG-GGGGHHHHH-HHH------HHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCcc-hHHHHHHHH-HHH------HhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 4678889999888888776 788888888 876 44432 233445555566773 5556778888888888888
Q ss_pred hcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCcccccccccee
Q psy7791 447 HRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIH 514 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~i~ 514 (551)
+.+..+- +.--..+|+|+|..++.|.+|++-+..+.
T Consensus 86 dDl~lD~--------------------------------P~a~~~la~flaraV~d~~l~~~~l~~~~ 121 (307)
T 2zu6_B 86 PELALDT--------------------------------PRAPQLVGQFIARAVGDGILCNTYIDSYK 121 (307)
T ss_dssp HHHHHHC--------------------------------TTHHHHHHHHHHHHHHTTSSCTTTTGGGT
T ss_pred hHhcccc--------------------------------cchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8765422 34488999999999999999999776543
No 20
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.71 E-value=10 Score=39.18 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=83.9
Q ss_pred hhhhhhhhhc---ccCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccc-cchhhHHHHHHHHhhcchhhH
Q psy7791 357 ALRRTIYLTI---HSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR-TYEKFFGLLAQRFCQINKMYV 432 (551)
Q Consensus 357 d~RR~If~~I---mSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEk-tyNpyY~~la~rlC~~~~~~~ 432 (551)
+++|.+=-+| .++-|..||+.-|-.|+.+.- ..+++..+ |.+ .+.-+ ..-..-+.|...||. +---.
T Consensus 52 e~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~-~~~~v~~~-I~~------aLdr~~~erE~~s~LLs~L~~-~~ls~ 122 (358)
T 3eiq_C 52 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEM-KSGVPVLA-VSL------ALEGKASHREMTSKLLSDLCG-TVMST 122 (358)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGG-GGGHHHHH-HHH------HTTSCHHHHHHHHHHHHTTTT-TSCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchh-HHHHHHHH-HHH------HhcCChHHHHHHHHHHHHHHh-CCCCH
Confidence 4444443333 457899999999999987664 78888888 887 54322 233445555666674 55667
Q ss_pred HHHHHHHHHHhhhhhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCccccccccc
Q psy7791 433 APLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSC 512 (551)
Q Consensus 433 ~tfq~~fwd~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~ 512 (551)
..|+..|-..+..++.+..+- +.--..+|+|+|..+..+.||++-|..
T Consensus 123 ~~i~~gf~~lle~ldDl~lDi--------------------------------P~a~~~la~flaRaV~d~~l~~~~l~~ 170 (358)
T 3eiq_C 123 NDVEKSFDKLLKDLPELALDT--------------------------------PRAPQLVGQFIARAVGDGILCNTYIDS 170 (358)
T ss_dssp HHHHHHHHHHHHTHHHHHHHC--------------------------------TTHHHHHHHHHHHHHHTTCSCSSTTGG
T ss_pred HHHHHHHHHHHHhhhhhcccc--------------------------------ccHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788888888888888765422 333789999999999999999998876
Q ss_pred ee
Q psy7791 513 IH 514 (551)
Q Consensus 513 i~ 514 (551)
+.
T Consensus 171 ~~ 172 (358)
T 3eiq_C 171 YK 172 (358)
T ss_dssp GC
T ss_pred Hh
Confidence 54
No 21
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=55.07 E-value=10 Score=43.27 Aligned_cols=85 Identities=9% Similarity=0.156 Sum_probs=64.9
Q ss_pred ccchheeeeeccccccccccccccchhhHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhcccccccccchhhhhhhhhhc
Q psy7791 389 ESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKIN 468 (551)
Q Consensus 389 erEi~~vl~i~C~~~~~~c~qEktyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~~i~~~~~~~~~~~~~~~~~~~~~~ 468 (551)
+.-+++.+ +.| ..+-..+-|+||.|..-+...+..+-..+-..++..|+..-. .++
T Consensus 46 r~~i~~~l-~~~------~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~l~--~~~--------------- 101 (771)
T 1h2v_C 46 KSKILRLL-CTV------ARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLK--ANN--------------- 101 (771)
T ss_dssp HHHHHHHH-HHH------HHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--TTC---------------
T ss_pred HHHHHHHH-HHH------HHhCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHH--ccC---------------
Confidence 34689999 999 999999999999999999998888887777777777755322 111
Q ss_pred chhhhhhhhccccccchhhHHhhHHHHHHHHHhhCcccc-cccccee
Q psy7791 469 GLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGW-HVLSCIH 514 (551)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l-~vLk~i~ 514 (551)
-++.+.+.+|+|||+..+.++= ++|..+.
T Consensus 102 -----------------~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~ 131 (771)
T 1h2v_C 102 -----------------YNEAVYLVRFLSDLVNCHVIAAPSMVAMFE 131 (771)
T ss_dssp -----------------HHHHHHHHHHHHHHHHTTSBCHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHhccCCeecHHHHHHHHH
Confidence 3449999999999999887643 3444443
No 22
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.44 E-value=26 Score=36.08 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=77.7
Q ss_pred ccCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccc--cchhhHHHHHHHHhhcchhhHHHHHHHHHHHhh
Q psy7791 367 HSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR--TYEKFFGLLAQRFCQINKMYVAPLEQIFRESYS 444 (551)
Q Consensus 367 mSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEk--tyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~ 444 (551)
.++-|-.||+.=+--|+.+ ..-.|+++.. |.+ ++.-+ .--.-.+.|...|+...---...|...|-..+.
T Consensus 228 ~~s~D~~EA~~ci~EL~~p-~fhhe~V~~a-v~~------aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~ 299 (358)
T 3eiq_C 228 LLSGDISEAEHCLKELEVP-HFHHELVYEA-IVM------VLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 299 (358)
T ss_dssp HHHCCHHHHHHHHHHHCCT-TCHHHHHHHH-HHH------HHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHccCC-cchHHHHHHH-HHH------HHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3567999999999888876 4667888877 776 54322 233445555566666666667788888888998
Q ss_pred hhhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCccccccccce
Q psy7791 445 TVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCI 513 (551)
Q Consensus 445 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~i 513 (551)
.++.+..+- +.--..+|+|+++.+..|.||++.+...
T Consensus 300 ~ldDl~lDi--------------------------------P~A~~~la~~varai~~g~l~~~f~~~~ 336 (358)
T 3eiq_C 300 EIPDINLDV--------------------------------PHSYSVLERFVEECFQAGIISKQLRDLC 336 (358)
T ss_dssp HHHHHHHHC--------------------------------TTHHHHHHHHHHHHHHHTSSCHHHHTTC
T ss_pred hccHhhccc--------------------------------ccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 888766421 3447899999999999999999865443
No 23
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=36.41 E-value=91 Score=28.18 Aligned_cols=90 Identities=11% Similarity=-0.028 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHHH
Q psy7791 151 SVTFIAHLVNQQVAHEIIVLEILTLLVETPTND----SDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTD 226 (551)
Q Consensus 151 ~~~fia~Lynf~Vv~~~li~dii~~Lle~~te~----~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~l 226 (551)
++.=||.+.|.+-..+..+...|+.-|...+.. .+.++=.++++| |..+...+ +-+.+++.|
T Consensus 35 ~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNc--------G~~Fh~ev------as~~Fl~el 100 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANC--------GKIFHLEV------CSRDFATEV 100 (163)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT--------CHHHHHHH------TSHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--------hHHHHHHH------hhHHHHHHH
Confidence 455677777777777777777777666654443 334444566777 77666432 123345555
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHHHcCCc
Q psy7791 227 VYNSSKGKLEKRVQYMIEVLAQVRKDNFK 255 (551)
Q Consensus 227 r~~l~~~~~ssR~~fmie~l~dLr~n~~k 255 (551)
.+++. .+...+++-.+-.++.--...|+
T Consensus 101 ~~l~~-~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 101 RAVIK-NKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHH-TTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHc-cCCCHHHHHHHHHHHHHHHHHhc
Confidence 55554 22334454444334333333343
No 24
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.80 E-value=28 Score=35.09 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=76.6
Q ss_pred cCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccc--cchhhHHHHHHHHhhcchhhHHHHHHHHHHHhhh
Q psy7791 368 SSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR--TYEKFFGLLAQRFCQINKMYVAPLEQIFRESYST 445 (551)
Q Consensus 368 SS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEk--tyNpyY~~la~rlC~~~~~~~~tfq~~fwd~~~~ 445 (551)
++-|-.||+.=+-.|+.+ ..-.|++... |.. +..-+ .--.--+-|...|+...---...|...|-..+..
T Consensus 178 ~~~D~~EA~~ci~EL~~p-~f~~e~V~~a-i~~------alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~ 249 (307)
T 2zu6_B 178 LSGDISEAEHCLKELEVP-HFHHELVYEA-IIM------VLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNE 249 (307)
T ss_dssp HHCCHHHHHHHHHHHCCG-GGHHHHHHHH-HHH------HHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCC-cchHHHHHHH-HHH------HHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Confidence 467999999998888876 5667777766 655 33321 1234455566667766666667888888889988
Q ss_pred hhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHHHHHhhCccccccccce
Q psy7791 446 VHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCI 513 (551)
Q Consensus 446 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a~Ll~~~~l~l~vLk~i 513 (551)
++.+..+- +.--..+|+|+++.+..|.||.+.++..
T Consensus 250 l~Dl~lDi--------------------------------P~A~~~la~~v~~ai~~g~l~~~~~~~~ 285 (307)
T 2zu6_B 250 IPDINLDV--------------------------------PHSYSVLERFVEECFQAGIISKQLRDLC 285 (307)
T ss_dssp HHHHHHHC--------------------------------TTHHHHHHHHHHHHHHHTSSCHHHHHTS
T ss_pred ccHhhccc--------------------------------ccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 88765421 4447899999999999999999877665
No 25
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.56 E-value=82 Score=28.17 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcccccHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHH
Q psy7791 149 INSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDS----DFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFS 224 (551)
Q Consensus 149 ~n~~~fia~Lynf~Vv~~~li~dii~~Lle~~te~~----iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~ 224 (551)
...+.-||.+.|.+-..+.-+...|+.=+.+.+..- +.++=.++++| |..+...+ +-+.+++
T Consensus 29 w~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNC--------G~~fh~ei------as~~Fl~ 94 (149)
T 3g2s_A 29 WASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSC--------GKRFHDEV------GKFRFLN 94 (149)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC--------CHHHHHHH------TSHHHHH
T ss_pred HHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc--------CHHHHHHH------hhHHHHH
Confidence 345677888888887777777777777666555443 33444566666 87775532 2244566
Q ss_pred HHHhhhcCC----CchhHHHHHHHHHHHHHHcCCcCCC
Q psy7791 225 TDVYNSSKG----KLEKRVQYMIEVLAQVRKDNFKDFP 258 (551)
Q Consensus 225 ~lr~~l~~~----~~ssR~~fmie~l~dLr~n~~k~~~ 258 (551)
.|.+++... ..+..++-.|-.++.--...|++.|
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 666666432 3456666555555554444555443
No 26
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=30.70 E-value=1.1e+02 Score=27.32 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcccccHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHH
Q psy7791 150 NSVTFIAHLVNQQVAHEIIVLEILTLLVETPTND----SDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFST 225 (551)
Q Consensus 150 n~~~fia~Lynf~Vv~~~li~dii~~Lle~~te~----~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~ 225 (551)
.++.-||.+.|.+-..+.-+...|+.=+.+.+.. .+.++=.++++| |..+...+ +-+.+++.
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNC--------G~~fh~ev------as~~Fl~e 85 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHC--------GEKFHSEV------AKFRFLNE 85 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--------CHHHHHHH------TSHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc--------CHHHHHHH------hhHHHHHH
Confidence 3556788888887777777777777766665554 334444566666 77775432 22456666
Q ss_pred HHhhhcC----CCchhHHHHHHHHHHHHHHcCCcC
Q psy7791 226 DVYNSSK----GKLEKRVQYMIEVLAQVRKDNFKD 256 (551)
Q Consensus 226 lr~~l~~----~~~ssR~~fmie~l~dLr~n~~k~ 256 (551)
|.+++.. ......++-.+-.++.--...|++
T Consensus 86 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 86 LIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7766653 234555554444444433334443
No 27
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=30.30 E-value=9.3 Score=24.43 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.6
Q ss_pred cchhhHHHHHHH
Q psy7791 412 TYEKFFGLLAQR 423 (551)
Q Consensus 412 tyNpyY~~la~r 423 (551)
+++|||-+++.|
T Consensus 2 s~dPFYdml~~R 13 (26)
T 2kpa_A 2 SVDPFYEMLAAR 13 (26)
T ss_dssp CSHHHHHHHTCT
T ss_pred CcchHHHHHHHH
Confidence 579999998754
No 28
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=27.75 E-value=1.1e+02 Score=27.97 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcccccHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHH
Q psy7791 150 NSVTFIAHLVNQQVAHEIIVLEILTLLVETPTND----SDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFST 225 (551)
Q Consensus 150 n~~~fia~Lynf~Vv~~~li~dii~~Lle~~te~----~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~ 225 (551)
.++.-||.+.|.+-.....+...|+.-+...+.. .+.++=.++++| |..+...+ +-+.+++.
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC--------G~~Fh~ev------as~~Fl~e 97 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC--------GRRFHNEV------GKFRFLNE 97 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--------HHHHHHHH------TSHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc--------CHHHHHHH------hhHHHHHH
Confidence 3556777888887777777777777766655543 344445566777 66665422 22345555
Q ss_pred HHhhhcC----CCchhHHHHHHHHHHHHHHcCCc
Q psy7791 226 DVYNSSK----GKLEKRVQYMIEVLAQVRKDNFK 255 (551)
Q Consensus 226 lr~~l~~----~~~ssR~~fmie~l~dLr~n~~k 255 (551)
|.+++.. .....+++-.+-.++.--...|+
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5555532 23445555444444333333343
No 29
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=23.62 E-value=56 Score=31.24 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=32.9
Q ss_pred ccchhhHHHHHHHHhhc----chhhHHHHHHHHHHHhhhhhccccc
Q psy7791 411 RTYEKFFGLLAQRFCQI----NKMYVAPLEQIFRESYSTVHRLDIN 452 (551)
Q Consensus 411 ktyNpyY~~la~rlC~~----~~~~~~tfq~~fwd~~~~i~~~~~~ 452 (551)
+..+|||-.++.+||.. ++....++..+|..+|..|-....+
T Consensus 113 ~~~~p~fY~lG~~L~~l~~~ed~~L~~~L~~tf~~R~~~I~d~a~~ 158 (219)
T 2e9x_C 113 HKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQN 158 (219)
T ss_dssp TTSCSSHHHHHHHGGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCchHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45669999999999998 4567788888888888887655443
No 30
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=21.43 E-value=64 Score=27.31 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHhhhh------h---hcccCcccc--chh-hhcchHHHHHHHHHHHhhhcCCCchh
Q psy7791 170 LEILTLLVETPTNDSDFSLEPYSKHKLHH------L---RSLMCMPLW--WIS-SIQSFQALESFFSTDVYNSSKGKLEK 237 (551)
Q Consensus 170 ~dii~~Lle~~te~~iEll~~lL~~~G~~------L---R~~dG~~L~--~~~-~~q~~~~l~~i~~~lr~~l~~~~~ss 237 (551)
.++|+.|++.|.-+=+.+--.+|++.|-- | .+.||..+. .++ +.|+- -..+-++|++...+....+
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~--D~~~R~qL~~KfG~enVAk 91 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKD--DEDTREALVKKFGAQNVAR 91 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCC--CHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcC--CHHHHHHHHHHHhhHHHHH
Confidence 45566666655555444444455544421 1 223333332 333 56652 2357778888777778888
Q ss_pred HHHHH
Q psy7791 238 RVQYM 242 (551)
Q Consensus 238 R~~fm 242 (551)
|+-|.
T Consensus 92 Ri~F~ 96 (111)
T 3k6g_A 92 RIEFR 96 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 31
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=20.24 E-value=3.6e+02 Score=23.72 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcc--------cccHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHH
Q psy7791 151 SVTFIAHLVNQQ--------VAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESF 222 (551)
Q Consensus 151 ~~~fia~Lynf~--------Vv~~~li~dii~~Lle~~te~~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i 222 (551)
++.++|.=|+-. =++..+++.+++-|-.+++. +.+.=+..|+.|-..+-..|+ ..++.. |.-+..+
T Consensus 31 lv~~lc~~~dp~~~~~~~~~~Lsq~vLLSLiqqls~dL~~-~~~~Kl~WLe~vl~aid~~dp-~i~~~~----p~Il~~l 104 (139)
T 2vxg_A 31 LVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISADMTN-HNELKQRYLNEALLAINMADP-ITREHA----PKVLTEL 104 (139)
T ss_dssp HHHHHHHHSCHHHHTC----CCCHHHHHHHHHHHHHCCTT-CCHHHHHHHHHHHHHCCTTSH-HHHHHH----HHHHHHH
T ss_pred HHHHHHHcCCHHHhcCCCCCCccHHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHcCCCCc-hHHHHH----HHHHHHH
Confidence 677777666554 23778999999999888854 456778899999666666553 345555 7777777
Q ss_pred HHHHHhhhc---CCCchhHHHHHHHHHHHHHH
Q psy7791 223 FSTDVYNSS---KGKLEKRVQYMIEVLAQVRK 251 (551)
Q Consensus 223 ~~~lr~~l~---~~~~ssR~~fmie~l~dLr~ 251 (551)
+.++..... ....-++++.|+..+..++.
T Consensus 105 ~~~L~~~~~~~p~~~~~~~i~~l~~~~~~l~~ 136 (139)
T 2vxg_A 105 YRNCQQFIKNSPKNSQFSNVRLLMKAIITYRD 136 (139)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCChHHhHHHHHHHHHHHHHH
Confidence 777765432 23556778888887766653
Done!