Your job contains 1 sequence.
>psy7791
MLDIATQQESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKS
IHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSK
FPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETP
TNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQ
YMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLM
NEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEGEKENKETIIDNTETNLVALRR
TIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLL
AQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSS
NVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMG
LSKLNQKIKDP
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7791
(551 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086707 - symbol:ncm "nucampholin" species:7227 "D... 1154 2.4e-142 2
UNIPROTKB|F1RYP5 - symbol:CWC22 "Uncharacterized protein"... 1028 3.4e-126 2
UNIPROTKB|J9P9J1 - symbol:CWC22 "Uncharacterized protein"... 1026 5.6e-126 2
RGD|1565385 - symbol:Cwc22 "CWC22 spliceosome-associated ... 1026 5.6e-126 2
UNIPROTKB|E2RIF6 - symbol:CWC22 "Uncharacterized protein"... 1022 1.5e-125 2
UNIPROTKB|F1MWG3 - symbol:CWC22 "Uncharacterized protein"... 1021 1.9e-125 2
MGI|MGI:2136773 - symbol:Cwc22 "CWC22 spliceosome-associa... 1015 8.1e-125 2
UNIPROTKB|B7WP74 - symbol:CWC22 "Pre-mRNA-splicing factor... 1013 1.3e-124 2
UNIPROTKB|Q9HCG8 - symbol:CWC22 "Pre-mRNA-splicing factor... 1013 1.3e-124 2
UNIPROTKB|Q52KN9 - symbol:cwc22 "Pre-mRNA-splicing factor... 1011 2.7e-124 2
UNIPROTKB|Q5RA93 - symbol:CWC22 "Pre-mRNA-splicing factor... 1009 3.5e-124 2
ZFIN|ZDB-GENE-060929-452 - symbol:cwc22 "CWC22 spliceosom... 1013 5.7e-124 2
UNIPROTKB|B7WP27 - symbol:CWC22 "Pre-mRNA-splicing factor... 1006 7.2e-124 2
UNIPROTKB|E9PU74 - symbol:LOC500684 "Protein LOC500684" s... 728 1.9e-118 3
WB|WBGene00002957 - symbol:let-858 species:6239 "Caenorha... 945 1.4e-112 2
UNIPROTKB|Q17336 - symbol:let-858 "Pre-mRNA-splicing fact... 945 1.4e-112 2
UNIPROTKB|F1NI57 - symbol:CWC22 "Pre-mRNA-splicing factor... 862 1.2e-108 2
TAIR|locus:2025797 - symbol:AT1G80930 "AT1G80930" species... 458 2.5e-108 3
UNIPROTKB|Q5ZKA3 - symbol:CWC22 "Pre-mRNA-splicing factor... 845 7.2e-107 2
POMBASE|SPBC13E7.01 - symbol:cwf22 "splicing factor Cwf22... 822 2.0e-100 2
DICTYBASE|DDB_G0267796 - symbol:DDB_G0267796 "initiation ... 789 4.7e-99 2
ASPGD|ASPL0000053315 - symbol:AN0289 species:162425 "Emer... 685 3.0e-91 2
GENEDB_PFALCIPARUM|PFL1855w - symbol:PFL1855w "cell cycle... 522 7.1e-89 3
UNIPROTKB|Q8I540 - symbol:PFL1855w "Cell cycle control pr... 522 7.1e-89 3
RGD|1590641 - symbol:LOC680519 "similar to CG12750-PA" sp... 722 2.3e-71 1
CGD|CAL0000928 - symbol:orf19.1771 species:5476 "Candida ... 240 1.4e-43 3
SGD|S000003510 - symbol:CWC22 "Spliceosome-associated pro... 142 3.0e-23 3
UNIPROTKB|F1M323 - symbol:F1M323 "Uncharacterized protein... 195 3.1e-22 2
UNIPROTKB|F1LX25 - symbol:F1LX25 "Uncharacterized protein... 195 2.0e-19 2
UNIPROTKB|Q5C9Z4 - symbol:NOM1 "Nucleolar MIF4G domain-co... 122 7.8e-09 3
UNIPROTKB|E1B8C2 - symbol:LOC618228 "Uncharacterized prot... 117 1.0e-08 3
ZFIN|ZDB-GENE-060503-321 - symbol:nom1 "nucleolar protein... 113 2.1e-08 3
TAIR|locus:504956291 - symbol:AT1G52325 "AT1G52325" speci... 91 4.8e-08 2
MGI|MGI:1861749 - symbol:Nom1 "nucleolar protein with MIF... 124 1.5e-07 3
UNIPROTKB|F1P1C9 - symbol:NOM1 "Uncharacterized protein" ... 104 2.3e-07 3
>FB|FBgn0086707 [details] [associations]
symbol:ncm "nucampholin" species:7227 "Drosophila
melanogaster" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0006911 SUPFAM:SSF48371
EMBL:AE014134 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
GeneTree:ENSGT00650000093379 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:AY061596
EMBL:AY089504 EMBL:BT100034 EMBL:BT031132 RefSeq:NP_609877.2
UniGene:Dm.11546 ProteinModelPortal:Q9VJ87 MINT:MINT-1003368
STRING:Q9VJ87 PaxDb:Q9VJ87 EnsemblMetazoa:FBtr0081088 GeneID:35099
KEGG:dme:Dmel_CG12750 CTD:35099 FlyBase:FBgn0086707
InParanoid:Q9VJ87 OMA:ETEDILN OrthoDB:EOG48GTJG PhylomeDB:Q9VJ87
GenomeRNAi:35099 NextBio:791857 Bgee:Q9VJ87 Uniprot:Q9VJ87
Length = 1330
Score = 1154 (411.3 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 241/447 (53%), Positives = 309/447 (69%)
Query: 14 KTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNI 73
+ + ++L+S+TGGAYIPPAKL++MQ I+DKSS YQRI+WE LKKSIHG +NKVN NI
Sbjct: 376 RKTVDVLTSRTGGAYIPPAKLRMMQSQITDKSSAAYQRIAWEALKKSIHGYINKVNVTNI 435
Query: 74 GIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133
II R+L +ENI+RGRGLL+R+I+QAQAASPTFT+VYAALV IINSKFP+IGELLL R +
Sbjct: 436 AIITRELLRENIVRGRGLLSRSIIQAQAASPTFTHVYAALVSIINSKFPNIGELLLKRLV 495
Query: 134 QQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSK 193
QF+R+F+RNDK +C+++ FI HLVNQ+VAH PT+DS +E
Sbjct: 496 IQFRRAFRRNDKMVCMSATRFIGHLVNQRVAHEILALEILTLLVETPTDDS---VEV--- 549
Query: 194 HKLHHLRSLMC-MPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKD 252
+ L+ C M L +SS + A+ ++ +GKL+KRVQYMIEVL Q+RKD
Sbjct: 550 -AIAFLKE--CGMKLTEVSS-KGIGAIFEMLRNILH---EGKLDKRVQYMIEVLFQIRKD 602
Query: 253 NFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREI 312
FKD V+ +L+LV E+D+FTHLM LD +T+DILNVF++D Y NE+KY L REI
Sbjct: 603 GFKDHQAVVPELELVEEDDQFTHLMMLDEATETEDILNVFKFDDNYAENEDKYKGLSREI 662
Query: 313 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKET---IIDNTETNLVALRRTIYLTIHSS 369
L K IID+TETNL+ALRRTIYLTI+SS
Sbjct: 663 LGSDDGSSSGSGSGSDSDSDSDGESGSDAEKKAEAGDIIDSTETNLIALRRTIYLTINSS 722
Query: 370 LDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINK 429
LD+EECAHKL++MQLKPGQE ELCH+ +D +Q RTYEKF+GLLAQRFC INK
Sbjct: 723 LDYEECAHKLMKMQLKPGQEIELCHMF-LDCC-----AEQ-RTYEKFYGLLAQRFCNINK 775
Query: 430 MYVAPLEQIFRESYSTVHRLDINKLRD 456
+Y+ P E+IF+++Y T HRLD N+LR+
Sbjct: 776 IYIPPFEEIFKDTYQTTHRLDTNRLRN 802
Score = 259 (96.2 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 49/64 (76%), Positives = 56/64 (87%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
++LRNV+KFFAH LFTDAI W VL CI LNE++TTSS RIFIKILFQEL+EYMGL KLN
Sbjct: 798 NRLRNVSKFFAHLLFTDAISWDVLECIQLNEDDTTSSSRIFIKILFQELAEYMGLGKLNA 857
Query: 547 KIKD 550
K+KD
Sbjct: 858 KLKD 861
>UNIPROTKB|F1RYP5 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 GO:GO:0071013 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:CU855527
Ensembl:ENSSSCT00000017430 Uniprot:F1RYP5
Length = 904
Score = 1028 (366.9 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 220/458 (48%), Positives = 294/458 (64%)
Query: 5 ATQQE--SSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+TQ E S + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 107 STQDEPNSKKKKEELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 166
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NIGII ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 167 GLINKVNISNIGIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 226
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 227 QIGELILKRLILNFRKGYRRNDKPLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 286
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 287 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 334
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 335 IEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 394
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVAL 358
EKY +++EIL ++E TI D TE NLV+
Sbjct: 395 EKYKAIKKEILDEGDSDSNTDQDAGSSEEEEEEEEEEGEEDEEGQKVTIHDKTEINLVSF 454
Query: 359 RRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFG 418
RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFG
Sbjct: 455 RRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKFFG 507
Query: 419 LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 508 LLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRN 545
Score = 232 (86.7 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 541 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 600
Query: 547 KIKD 550
++KD
Sbjct: 601 RLKD 604
>UNIPROTKB|J9P9J1 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 CTD:57703
EMBL:AAEX03017820 EMBL:AAEX03017821 RefSeq:XP_545549.2
Ensembl:ENSCAFT00000049152 GeneID:488427 KEGG:cfa:488427
Uniprot:J9P9J1
Length = 908
Score = 1026 (366.2 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 219/458 (47%), Positives = 293/458 (63%)
Query: 5 ATQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+TQ E + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 108 STQDEPTAKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 167
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NIGII ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 168 GLINKVNISNIGIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 227
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 228 QIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 287
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 288 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 335
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 336 IEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 395
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVAL 358
EKY +++EIL ++E TI D TE NLV+
Sbjct: 396 EKYKAIKKEILDEGDSDSNTDQDAGSSEEEEEEEDEEGEEDEEGQKVTIHDKTEINLVSF 455
Query: 359 RRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFG 418
RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFG
Sbjct: 456 RRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKFFG 508
Query: 419 LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 509 LLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRN 546
Score = 232 (86.7 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 542 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 601
Query: 547 KIKD 550
++KD
Sbjct: 602 RLKD 605
>RGD|1565385 [details] [associations]
symbol:Cwc22 "CWC22 spliceosome-associated protein homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 RGD:1565385
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 IPI:IPI00382207
Ensembl:ENSRNOT00000037684 UCSC:RGD:1565385 ArrayExpress:F1LY38
Uniprot:F1LY38
Length = 905
Score = 1026 (366.2 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 219/458 (47%), Positives = 292/458 (63%)
Query: 5 ATQQE--SSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+TQ+E S + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 109 STQEEPTSKKKKDEQDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 168
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NI II ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 169 GLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 228
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 229 QIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 288
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 289 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 336
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 337 IEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 396
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXNKETIIDNTETNLVAL 358
EKY +++EIL K TI D TE NLV+
Sbjct: 397 EKYKVIKKEILDEGDSDSNTDQEAGSSPSRHSENSPFSRASSSGQKVTIHDKTEINLVSF 456
Query: 359 RRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFG 418
RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFG
Sbjct: 457 RRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMI-LDCCA------QQRTYEKFFG 509
Query: 419 LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 510 LLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRN 547
Score = 232 (86.7 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 543 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 602
Query: 547 KIKD 550
++KD
Sbjct: 603 RLKD 606
>UNIPROTKB|E2RIF6 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:AAEX03017820
EMBL:AAEX03017821 Ensembl:ENSCAFT00000022474 Uniprot:E2RIF6
Length = 914
Score = 1022 (364.8 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 219/460 (47%), Positives = 293/460 (63%)
Query: 5 ATQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+TQ E + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 107 STQDEPTAKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 166
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NIGII ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 167 GLINKVNISNIGIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 226
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 227 QIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 286
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 287 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 334
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 335 IEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 394
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE------TIIDNTETNLV 356
EKY +++EIL ++E TI D TE NLV
Sbjct: 395 EKYKAIKKEILDEGDSDSNTDQDAGSSEEEEEEEDEEGEEDEEGKRQKVTIHDKTEINLV 454
Query: 357 ALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKF 416
+ RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKF
Sbjct: 455 SFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKF 507
Query: 417 FGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
FGLLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 508 FGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRN 547
Score = 232 (86.7 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 543 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 602
Query: 547 KIKD 550
++KD
Sbjct: 603 RLKD 606
>UNIPROTKB|F1MWG3 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 GO:GO:0071013 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:DAAA02004113
IPI:IPI00708801 Ensembl:ENSBTAT00000028962 Uniprot:F1MWG3
Length = 899
Score = 1021 (364.5 bits), Expect = 1.9e-125, Sum P(2) = 1.9e-125
Identities = 218/458 (47%), Positives = 292/458 (63%)
Query: 5 ATQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+ Q E + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 106 SAQDEPTAKKKKEELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 165
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NIGII ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 166 GLINKVNISNIGIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 225
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 226 QIGELILKRLILNFRKGYRRNDKPLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 285
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 286 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 333
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 334 IEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 393
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVAL 358
EKY +++EIL ++E TI D TE NLV+
Sbjct: 394 EKYRAIKKEILDEGDSDSNTDQDAGSSEEEEEEEEEEGEEDEEGQKVTIHDKTEINLVSF 453
Query: 359 RRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFG 418
RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFG
Sbjct: 454 RRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKFFG 506
Query: 419 LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 507 LLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRN 544
Score = 232 (86.7 bits), Expect = 1.9e-125, Sum P(2) = 1.9e-125
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 540 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 599
Query: 547 KIKD 550
++KD
Sbjct: 600 RLKD 603
>MGI|MGI:2136773 [details] [associations]
symbol:Cwc22 "CWC22 spliceosome-associated protein homolog
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 MGI:MGI:2136773
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 OrthoDB:EOG4JM7P4 ChiTaRS:CWC22 EMBL:AK045589
EMBL:AK132001 EMBL:AK077961 EMBL:AK149528 EMBL:BC003993
IPI:IPI00756701 IPI:IPI00757147 RefSeq:NP_085037.2
RefSeq:NP_766255.1 UniGene:Mm.288151 ProteinModelPortal:Q8C5N3
PhosphoSite:Q8C5N3 PaxDb:Q8C5N3 PRIDE:Q8C5N3
Ensembl:ENSMUST00000065889 Ensembl:ENSMUST00000111818
Ensembl:ENSMUST00000111821 GeneID:80744 KEGG:mmu:80744
InParanoid:Q8C5N3 OMA:VENEERY NextBio:350099 Bgee:Q8C5N3
CleanEx:MM_BC003993 Genevestigator:Q8C5N3 Uniprot:Q8C5N3
Length = 908
Score = 1015 (362.4 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 218/457 (47%), Positives = 291/457 (63%)
Query: 7 QQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGS 64
Q+E + K + L ++TGGAYIPPAKL++MQ+ I+DKSS+ YQR+SWE LKKSI+G
Sbjct: 108 QEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGL 167
Query: 65 VNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSI 124
+NKVN NI II ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP I
Sbjct: 168 INKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQI 227
Query: 125 GELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDS 184
GEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+DS
Sbjct: 228 GELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDS 287
Query: 185 DFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIE 244
+ K L+ P I++I F+ L + + +++KRVQYMIE
Sbjct: 288 VEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYMIE 335
Query: 245 VLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEK 304
V+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NEEK
Sbjct: 336 VMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEK 395
Query: 305 YTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE-----TIIDNTETNLVALR 359
Y +++EIL ++E TI D TE NLV+ R
Sbjct: 396 YKAIKKEILDEGDSDSNTDQGAGSSEDEEEEDEEEEGEDEEGGQKVTIHDKTEINLVSFR 455
Query: 360 RTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGL 419
RTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFGL
Sbjct: 456 RTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMI-LDCCA------QQRTYEKFFGL 508
Query: 420 LAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 509 LAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRN 545
Score = 232 (86.7 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 541 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 600
Query: 547 KIKD 550
++KD
Sbjct: 601 RLKD 604
>UNIPROTKB|B7WP74 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
HOGENOM:HOG000212368 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 EMBL:AC068194 EMBL:AC096587 HGNC:HGNC:29322
ChiTaRS:CWC22 IPI:IPI00917297 ProteinModelPortal:B7WP74
STRING:B7WP74 Ensembl:ENST00000404136 ArrayExpress:B7WP74
Bgee:B7WP74 Uniprot:B7WP74
Length = 745
Score = 1013 (361.7 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 217/458 (47%), Positives = 291/458 (63%)
Query: 5 ATQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+ Q E + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 108 SAQDEPATKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 167
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NI II ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 168 GLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 227
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 228 QIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 287
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 288 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 335
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 336 IEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 395
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVAL 358
EKY +++EIL ++E TI D TE NLV+
Sbjct: 396 EKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSF 455
Query: 359 RRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFG 418
RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFG
Sbjct: 456 RRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKFFG 508
Query: 419 LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 509 LLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRN 546
Score = 232 (86.7 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 542 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 601
Query: 547 KIKD 550
++KD
Sbjct: 602 RLKD 605
>UNIPROTKB|Q9HCG8 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IC] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0048024 Gene3D:1.25.40.180 eggNOG:NOG293831
KO:K13100 OMA:SENFRRK InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 CTD:57703 OrthoDB:EOG4JM7P4 EMBL:AB046824
EMBL:AK025635 EMBL:AK026978 EMBL:AC068194 EMBL:AC096587
EMBL:BC016651 EMBL:BC031216 EMBL:BC053573 EMBL:BC057826
EMBL:BC093952 EMBL:BC093954 IPI:IPI00177381 RefSeq:NP_065994.1
UniGene:Hs.311363 ProteinModelPortal:Q9HCG8 IntAct:Q9HCG8
STRING:Q9HCG8 PhosphoSite:Q9HCG8 DMDM:296439380 PaxDb:Q9HCG8
PRIDE:Q9HCG8 Ensembl:ENST00000410053 GeneID:57703 KEGG:hsa:57703
UCSC:uc002unp.2 GeneCards:GC02M180809 H-InvDB:HIX0022794
HGNC:HGNC:29322 HPA:HPA036748 neXtProt:NX_Q9HCG8
PharmGKB:PA164718415 InParanoid:Q9HCG8 ChiTaRS:CWC22
GenomeRNAi:57703 NextBio:64575 ArrayExpress:Q9HCG8 Bgee:Q9HCG8
Genevestigator:Q9HCG8 Uniprot:Q9HCG8
Length = 908
Score = 1013 (361.7 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 217/458 (47%), Positives = 291/458 (63%)
Query: 5 ATQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+ Q E + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 108 SAQDEPATKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 167
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NI II ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 168 GLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 227
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 228 QIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 287
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 288 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 335
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 336 IEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 395
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVAL 358
EKY +++EIL ++E TI D TE NLV+
Sbjct: 396 EKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSF 455
Query: 359 RRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFG 418
RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFG
Sbjct: 456 RRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKFFG 508
Query: 419 LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 509 LLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRN 546
Score = 232 (86.7 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 542 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 601
Query: 547 KIKD 550
++KD
Sbjct: 602 RLKD 605
>UNIPROTKB|Q52KN9 [details] [associations]
symbol:cwc22 "Pre-mRNA-splicing factor CWC22 homolog"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 CTD:57703 EMBL:BC094259
RefSeq:NP_001089418.1 UniGene:Xl.41789 ProteinModelPortal:Q52KN9
GeneID:734468 KEGG:xla:734468 Xenbase:XB-GENE-1010542
Uniprot:Q52KN9
Length = 803
Score = 1011 (360.9 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 219/459 (47%), Positives = 287/459 (62%)
Query: 7 QQESSEP-----KTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSI 61
+Q +EP K + + ++TGGAYIPPA+L++MQ+ I+DKSS+ YQR+SWE LKKSI
Sbjct: 154 EQNQTEPPVKKKKEELDPILTRTGGAYIPPARLRMMQEQITDKSSMAYQRMSWEALKKSI 213
Query: 62 HGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKF 121
+G VNKVN NIG I ++L QENI+RGRGLL R++LQAQ+ASP FT+VYAALV IINSKF
Sbjct: 214 NGLVNKVNVSNIGNIIQELLQENIVRGRGLLARSVLQAQSASPIFTHVYAALVSIINSKF 273
Query: 122 PSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPT 181
P IGEL+L R I F++ ++RNDK LC+ S F+AHL+NQ VAH P
Sbjct: 274 PHIGELILKRLILNFRKGYRRNDKQLCLTSSKFVAHLINQNVAHEVLALEMLTLLLERPN 333
Query: 182 NDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQY 241
+DS + K L+ P I++I F+ L + + +++KRVQY
Sbjct: 334 DDSVEVAIGFLKES--GLKLTQVTPRG-INAI--FERLRNILH-------ESEIDKRVQY 381
Query: 242 MIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMN 301
MIEV+ VRKD FKD P + E LDLV EED+FTH++ L+ + +D+LNVF+ DP++L N
Sbjct: 382 MIEVMFAVRKDGFKDHPVIPEGLDLVEEEDQFTHMLPLEDDYNQEDVLNVFKMDPDFLEN 441
Query: 302 EEKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVA 357
EEKY +++EIL E TI D TE NLVA
Sbjct: 442 EEKYKAIKKEILDEGDSDSEGDANEGSEDESEEEEEDGQEAGTEGEKMTIHDKTEVNLVA 501
Query: 358 LRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFF 417
RRTIYL I SSLDFEECAHKL++M Q ELC+++ +D Q RTYEKFF
Sbjct: 502 FRRTIYLAIQSSLDFEECAHKLIKMDFPESQTKELCNMI-LDCCA------QQRTYEKFF 554
Query: 418 GLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
GLLA RFC + K Y+ E IF+E + T+HRL+ NKLR+
Sbjct: 555 GLLAGRFCLLKKEYLEAFENIFKEQFETIHRLETNKLRN 593
Score = 231 (86.4 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 43/64 (67%), Positives = 53/64 (82%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL C++L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 589 NKLRNVAKMFAHLLYTDSLPWSVLECMNLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 648
Query: 547 KIKD 550
++KD
Sbjct: 649 RLKD 652
>UNIPROTKB|Q5RA93 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9601 "Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 EMBL:CR859125 RefSeq:NP_001125780.1 UniGene:Pab.19070
ProteinModelPortal:Q5RA93 GeneID:100172707 KEGG:pon:100172707
InParanoid:Q5RA93 Uniprot:Q5RA93
Length = 908
Score = 1009 (360.2 bits), Expect = 3.5e-124, Sum P(2) = 3.5e-124
Identities = 215/452 (47%), Positives = 291/452 (64%)
Query: 10 SSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVN 69
+ + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN
Sbjct: 115 TKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVN 174
Query: 70 TGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLL 129
NI II ++L QENI+RGRGLL+R++LQAQ+ASP FT+VYAALV IINSKFP IGEL+L
Sbjct: 175 ISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELIL 234
Query: 130 NRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLE 189
R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+DS +E
Sbjct: 235 KRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDS---VE 291
Query: 190 PYSKHKLHHLRSLMC-MPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQ 248
+ L+ C + L +S + A+ ++ S +++KRVQYMIEV+
Sbjct: 292 V----AIGFLKE--CGLKLTQVSP-RGINAIFGRLRNILHES---EIDKRVQYMIEVMFA 341
Query: 249 VRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTL 308
VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NEEKY +
Sbjct: 342 VRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAI 401
Query: 309 RREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVALRRTIYL 364
++EIL ++E TI D TE NLV+ RRTIYL
Sbjct: 402 KKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYL 461
Query: 365 TIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRF 424
I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFGLLA RF
Sbjct: 462 AIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKFFGLLAGRF 514
Query: 425 CQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
C + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 515 CMLKKEYMESFEGIFKEQYDTIHRLETNKLRN 546
Score = 232 (86.7 bits), Expect = 3.5e-124, Sum P(2) = 3.5e-124
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 542 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 601
Query: 547 KIKD 550
++KD
Sbjct: 602 RLKD 605
>ZFIN|ZDB-GENE-060929-452 [details] [associations]
symbol:cwc22 "CWC22 spliceosome-associated protein
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
ZFIN:ZDB-GENE-060929-452 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 OrthoDB:EOG4JM7P4 EMBL:BC124357 IPI:IPI00491845
RefSeq:NP_001071037.1 UniGene:Dr.74197 ProteinModelPortal:Q08C72
GeneID:566033 KEGG:dre:566033 InParanoid:Q08C72 NextBio:20887991
ArrayExpress:Q08C72 Uniprot:Q08C72
Length = 985
Score = 1013 (361.7 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
Identities = 218/447 (48%), Positives = 283/447 (63%)
Query: 14 KTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNI 73
K + + + ++TGGAYIPPAKL++MQ I+DKSS+EYQR+SWE LKKSI+G +NKVN NI
Sbjct: 213 KETLDPILTRTGGAYIPPAKLRMMQAQITDKSSLEYQRMSWEALKKSINGLINKVNVSNI 272
Query: 74 GIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133
I ++L QENI+RGRGLL R+ILQAQAASP FT+VY+A+V IINSKFP IGEL+L R I
Sbjct: 273 ANIIQELLQENIVRGRGLLARSILQAQAASPIFTHVYSAVVAIINSKFPQIGELILKRLI 332
Query: 134 QQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSK 193
F++ ++RNDK C+ + F+ HL+NQ VAH PT+DS + K
Sbjct: 333 LNFRKGYRRNDKQQCLTASKFVGHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAISFLK 392
Query: 194 HKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDN 253
L+ P I++I F+ L + + +++KRVQYMIEV+ +RKD
Sbjct: 393 EC--GLKLTEVSPRG-INAI--FERLRNILH-------ESEIDKRVQYMIEVMFAIRKDG 440
Query: 254 FKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREIL 313
FKD P + E LDLV EED+FTH++ L+ +T+DILNVF+ DP +L NEEKY T++REIL
Sbjct: 441 FKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNTEDILNVFKLDPNFLENEEKYKTIKREIL 500
Query: 314 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVALRRTIYLTIHSS 369
+E TI D TE NLVA RRTIYL I SS
Sbjct: 501 DEGSSDSGDDAGGSGDDEDDDEEDEEAAAGEEQEKVTIFDQTEVNLVAFRRTIYLAIQSS 560
Query: 370 LDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINK 429
LDFEECAHKL++M Q ELC+++ +D Q RTYEKFFGLLA RFC + K
Sbjct: 561 LDFEECAHKLIKMDFPESQTKELCNMI-LDCCA------QQRTYEKFFGLLAGRFCLLKK 613
Query: 430 MYVAPLEQIFRESYSTVHRLDINKLRD 456
Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 614 EYMESFEAIFQEQYETIHRLETNKLRN 640
Score = 226 (84.6 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
Identities = 40/64 (62%), Positives = 53/64 (82%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVA+ FAH L+TD++ W VL C+ ++E+ TTSS RIF+KILFQEL YMGL KLN+
Sbjct: 636 NKLRNVARIFAHLLYTDSVPWSVLECVRMSEDTTTSSSRIFVKILFQELCAYMGLPKLNE 695
Query: 547 KIKD 550
++KD
Sbjct: 696 RLKD 699
>UNIPROTKB|B7WP27 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 Gene3D:1.25.40.180 HOGENOM:HOG000212368
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
EMBL:AC068194 EMBL:AC096587 HGNC:HGNC:29322 ChiTaRS:CWC22
IPI:IPI00917297 ProteinModelPortal:B7WP27 STRING:B7WP27
Ensembl:ENST00000295749 HOVERGEN:HBG054017 ArrayExpress:B7WP27
Bgee:B7WP27 Uniprot:B7WP27
Length = 908
Score = 1006 (359.2 bits), Expect = 7.2e-124, Sum P(2) = 7.2e-124
Identities = 216/458 (47%), Positives = 290/458 (63%)
Query: 5 ATQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIH 62
+ Q E + K + L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+
Sbjct: 108 SAQDEPATKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSIN 167
Query: 63 GSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFP 122
G +NKVN NI II ++L QENI+R RGLL+R++LQAQ+ASP FT+VYAALV IINSKFP
Sbjct: 168 GLINKVNISNISIIIQELLQENIVRDRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFP 227
Query: 123 SIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTN 182
IGEL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+
Sbjct: 228 QIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTD 287
Query: 183 DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYM 242
DS + K L+ P I++I F+ L + + +++KRVQYM
Sbjct: 288 DSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNILH-------ESEIDKRVQYM 335
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NE
Sbjct: 336 IEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENE 395
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE----TIIDNTETNLVAL 358
EKY +++EIL ++E TI D TE NLV+
Sbjct: 396 EKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSF 455
Query: 359 RRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFG 418
RRTIYL I SSLDFEECAHKLL+M+ Q ELC+++ +D Q RTYEKFFG
Sbjct: 456 RRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMI-LDCCA------QQRTYEKFFG 508
Query: 419 LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
LLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 509 LLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRN 546
Score = 232 (86.7 bits), Expect = 7.2e-124, Sum P(2) = 7.2e-124
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 542 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 601
Query: 547 KIKD 550
++KD
Sbjct: 602 RLKD 605
>UNIPROTKB|E9PU74 [details] [associations]
symbol:LOC500684 "Protein LOC500684" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
IPI:IPI00765240 Ensembl:ENSRNOT00000036640 RGD:1562981 OMA:SHENSYS
Uniprot:E9PU74
Length = 879
Score = 728 (261.3 bits), Expect = 1.9e-118, Sum P(3) = 1.9e-118
Identities = 151/308 (49%), Positives = 213/308 (69%)
Query: 6 TQQESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSV 65
++++ + K + L ++TGGAYIPPAKL++MQ+ I DK+S+ YQR+SWE LKKSI+G +
Sbjct: 108 SKKKKKKKKDEQDPLLTRTGGAYIPPAKLRMMQEQIMDKNSLAYQRMSWEALKKSINGLI 167
Query: 66 NKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIG 125
NKVN NI II ++L QENI+RGRGLL+R++LQAQ+ASP FT++YAALV IINSKFP IG
Sbjct: 168 NKVNICNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHLYAALVAIINSKFPQIG 227
Query: 126 ELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSD 185
EL+L R I F++ ++RNDK LC+ + F+AHL+NQ VAH PT+DS
Sbjct: 228 ELILKRLIINFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEILTLLLERPTDDSV 287
Query: 186 FSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEV 245
+ K L+ P I++I F+ L + V+ S +++KRVQYMIEV
Sbjct: 288 EVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNI----VHES---EIDKRVQYMIEV 335
Query: 246 LAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKY 305
+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ NEEKY
Sbjct: 336 MFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKY 395
Query: 306 TTLRREIL 313
+++EIL
Sbjct: 396 KVIKKEIL 403
Score = 241 (89.9 bits), Expect = 1.9e-118, Sum P(3) = 1.9e-118
Identities = 48/89 (53%), Positives = 61/89 (68%)
Query: 368 SSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQI 427
SSLDFEEC HKLL+M+ Q ELC+++ +D Q RTYEKFFGLLA RFC +
Sbjct: 440 SSLDFEECVHKLLKMEFAESQTKELCNMI-LDCCA------QQRTYEKFFGLLAGRFCML 492
Query: 428 NKMYVAPLEQIFRESYSTVHRLDINKLRD 456
K Y+ E IF+E Y+T+HRL+ NKLR+
Sbjct: 493 KKEYMESFESIFKEQYNTIHRLETNKLRN 521
Score = 232 (86.7 bits), Expect = 1.9e-118, Sum P(3) = 1.9e-118
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD++ W VL CI L+EE TTSS RIF+KI FQEL EYMGL KLN
Sbjct: 517 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 576
Query: 547 KIKD 550
++KD
Sbjct: 577 RLKD 580
>WB|WBGene00002957 [details] [associations]
symbol:let-858 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0007281
"germ cell development" evidence=IMP] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0009792 GO:GO:0040007 GO:GO:0005654 SUPFAM:SSF48371
GO:GO:0002119 GO:GO:0008380 GO:GO:0003677 GO:GO:0018996
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 GO:GO:0000790
GO:GO:0007369 Gene3D:1.25.40.180 GO:GO:0042078 EMBL:U19615
EMBL:Z81525 PIR:T21688 RefSeq:NP_496363.1 UniGene:Cel.5489
ProteinModelPortal:Q17336 DIP:DIP-26173N IntAct:Q17336
MINT:MINT-1105983 STRING:Q17336 PaxDb:Q17336
EnsemblMetazoa:F33A8.1.1 EnsemblMetazoa:F33A8.1.2 GeneID:174689
KEGG:cel:CELE_F33A8.1 UCSC:F33A8.1.1 CTD:174689 WormBase:F33A8.1
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368
InParanoid:Q17336 KO:K13100 OMA:SENFRRK NextBio:885078
GO:GO:0043073 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 Uniprot:Q17336
Length = 897
Score = 945 (337.7 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 202/443 (45%), Positives = 274/443 (61%)
Query: 14 KTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNI 73
K +IL ++TGGAYIPPAKL+LMQQ ISDK S +YQR++WE +KK IHG VN+VN N+
Sbjct: 150 KEPLDILRTRTGGAYIPPAKLRLMQQQISDKQSEQYQRMNWERMKKKIHGLVNRVNAKNL 209
Query: 74 GIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133
I R+L QEN+IR +GLL R I+QAQA SP F+NVYAAL +INSKFP +GELLL R I
Sbjct: 210 VQIVRELLQENVIRSKGLLCRDIIQAQAFSPGFSNVYAALAAVINSKFPHVGELLLRRLI 269
Query: 134 QQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSK 193
QFKRSF+RND+ + +N + FIAHL+NQQVAH PT+DS + K
Sbjct: 270 VQFKRSFRRNDRGVTVNVIKFIAHLINQQVAHEVLALEIMILMLEEPTDDSVEVAIAFLK 329
Query: 194 HKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDN 253
L L P S +A+ T+ S+ L++R+QYMIE Q+RKD
Sbjct: 330 ECGAKL--LEIAPAALNSVYDRLRAI--LMETE---RSENALDRRIQYMIETAMQIRKDK 382
Query: 254 FKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREIL 313
F +P VIEDLDL+ EED+ H + L+ D ++ LNVF+ DPE+ NEE Y +R+EI+
Sbjct: 383 FAAYPAVIEDLDLIEEEDQIIHTLNLEDAVDPENGLNVFKLDPEFEKNEEVYEEIRKEII 442
Query: 314 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKETIIDNTETNLVALRRTIYLTIHSSLDFE 373
E IIDNT+ NL A RR +YLT+ SSLD++
Sbjct: 443 GNADISDEDGGDELDDEEEGSDVEEAPKKTTE-IIDNTDQNLTAFRREVYLTMQSSLDYQ 501
Query: 374 ECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVA 433
E AHKLL+M++ ++ELC ++ +D Q RTYE+F+G+L +RFC++ Y
Sbjct: 502 EAAHKLLKMKIPDSMQNELCAML-VDCCA------QQRTYERFYGMLIERFCRLRLEYQQ 554
Query: 434 PLEQIFRESYSTVHRLDINKLRD 456
E++ +++YST+HR+DI KLR+
Sbjct: 555 YFEKLCQDTYSTIHRIDITKLRN 577
Score = 186 (70.5 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 488 KLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQK 547
KLRN+A+ AH L TDAI W +L+ + + EE+TTSSGRI+IK +F EL E MG+ KL+ +
Sbjct: 574 KLRNLARLIAHLLSTDAIDWKILADMKMTEEDTTSSGRIYIKYIFNELVEAMGMVKLHSR 633
Query: 548 IKDP 551
+ DP
Sbjct: 634 VTDP 637
>UNIPROTKB|Q17336 [details] [associations]
symbol:let-858 "Pre-mRNA-splicing factor CWC22 homolog"
species:6239 "Caenorhabditis elegans" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0009792 GO:GO:0040007
GO:GO:0005654 SUPFAM:SSF48371 GO:GO:0002119 GO:GO:0008380
GO:GO:0003677 GO:GO:0018996 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0000790 GO:GO:0007369 Gene3D:1.25.40.180
GO:GO:0042078 EMBL:U19615 EMBL:Z81525 PIR:T21688 RefSeq:NP_496363.1
UniGene:Cel.5489 ProteinModelPortal:Q17336 DIP:DIP-26173N
IntAct:Q17336 MINT:MINT-1105983 STRING:Q17336 PaxDb:Q17336
EnsemblMetazoa:F33A8.1.1 EnsemblMetazoa:F33A8.1.2 GeneID:174689
KEGG:cel:CELE_F33A8.1 UCSC:F33A8.1.1 CTD:174689 WormBase:F33A8.1
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368
InParanoid:Q17336 KO:K13100 OMA:SENFRRK NextBio:885078
GO:GO:0043073 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 Uniprot:Q17336
Length = 897
Score = 945 (337.7 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 202/443 (45%), Positives = 274/443 (61%)
Query: 14 KTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNI 73
K +IL ++TGGAYIPPAKL+LMQQ ISDK S +YQR++WE +KK IHG VN+VN N+
Sbjct: 150 KEPLDILRTRTGGAYIPPAKLRLMQQQISDKQSEQYQRMNWERMKKKIHGLVNRVNAKNL 209
Query: 74 GIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133
I R+L QEN+IR +GLL R I+QAQA SP F+NVYAAL +INSKFP +GELLL R I
Sbjct: 210 VQIVRELLQENVIRSKGLLCRDIIQAQAFSPGFSNVYAALAAVINSKFPHVGELLLRRLI 269
Query: 134 QQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSK 193
QFKRSF+RND+ + +N + FIAHL+NQQVAH PT+DS + K
Sbjct: 270 VQFKRSFRRNDRGVTVNVIKFIAHLINQQVAHEVLALEIMILMLEEPTDDSVEVAIAFLK 329
Query: 194 HKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDN 253
L L P S +A+ T+ S+ L++R+QYMIE Q+RKD
Sbjct: 330 ECGAKL--LEIAPAALNSVYDRLRAI--LMETE---RSENALDRRIQYMIETAMQIRKDK 382
Query: 254 FKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREIL 313
F +P VIEDLDL+ EED+ H + L+ D ++ LNVF+ DPE+ NEE Y +R+EI+
Sbjct: 383 FAAYPAVIEDLDLIEEEDQIIHTLNLEDAVDPENGLNVFKLDPEFEKNEEVYEEIRKEII 442
Query: 314 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKETIIDNTETNLVALRRTIYLTIHSSLDFE 373
E IIDNT+ NL A RR +YLT+ SSLD++
Sbjct: 443 GNADISDEDGGDELDDEEEGSDVEEAPKKTTE-IIDNTDQNLTAFRREVYLTMQSSLDYQ 501
Query: 374 ECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVA 433
E AHKLL+M++ ++ELC ++ +D Q RTYE+F+G+L +RFC++ Y
Sbjct: 502 EAAHKLLKMKIPDSMQNELCAML-VDCCA------QQRTYERFYGMLIERFCRLRLEYQQ 554
Query: 434 PLEQIFRESYSTVHRLDINKLRD 456
E++ +++YST+HR+DI KLR+
Sbjct: 555 YFEKLCQDTYSTIHRIDITKLRN 577
Score = 186 (70.5 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 488 KLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQK 547
KLRN+A+ AH L TDAI W +L+ + + EE+TTSSGRI+IK +F EL E MG+ KL+ +
Sbjct: 574 KLRNLARLIAHLLSTDAIDWKILADMKMTEEDTTSSGRIYIKYIFNELVEAMGMVKLHSR 633
Query: 548 IKDP 551
+ DP
Sbjct: 634 VTDP 637
>UNIPROTKB|F1NI57 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
GO:GO:0071013 Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
IPI:IPI00584173 EMBL:AADN02019987 Ensembl:ENSGALT00000014643
OMA:DESNGRD Uniprot:F1NI57
Length = 854
Score = 862 (308.5 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 188/394 (47%), Positives = 245/394 (62%)
Query: 6 TQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHG 63
T +E++ K + + ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G
Sbjct: 43 THEEATSKKKKEEVDPILTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSING 102
Query: 64 SVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPS 123
VNKVN NI I +L QENI+RGRGLL+R+ILQAQ ASP FT+VYAALV IINSKFP+
Sbjct: 103 LVNKVNVSNIENIIYELLQENIVRGRGLLSRSILQAQGASPIFTHVYAALVAIINSKFPN 162
Query: 124 IGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTND 183
IGEL+L R I F++ ++RNDK LC+ S F+AHL+NQ VAH PT+D
Sbjct: 163 IGELILKRLILNFRKGYRRNDKQLCLTSSKFVAHLMNQNVAHEVLCLEMLTLLLERPTDD 222
Query: 184 SDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMI 243
S + K L+ P I++I F L + K++ RVQYMI
Sbjct: 223 SIEVAIGFLKES--GLKLTEVSPRG-INAI--FDRLRHILH-------ESKIDMRVQYMI 270
Query: 244 EVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEE 303
EV+ VRKD FKD P + E LDLV EED+FTH++ L+ + +D+LNVF+ DP ++ NEE
Sbjct: 271 EVMFAVRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNPEDVLNVFKMDPNFMENEE 330
Query: 304 KYTTLRREILXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXNKETIIDNTETNLVALRRTI 362
KY L++EIL K T+ D TE NLV+ RRTI
Sbjct: 331 KYKALKKEILDEGDSESEPDQEAGSSDEEEEEDEEEDEDGQKVTVHDKTEINLVSFRRTI 390
Query: 363 YLTIHSSLDFEECAHKLLRMQLKPGQESELCHIV 396
YL I SSLDFEECAHKLL+M Q ELC+++
Sbjct: 391 YLAIQSSLDFEECAHKLLKMDFPESQTKELCNMI 424
Score = 523 (189.2 bits), Expect = 1.3e-71, Sum P(2) = 1.3e-71
Identities = 109/226 (48%), Positives = 139/226 (61%)
Query: 232 KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 291
+ K++ RVQYMIEV+ VRKD FKD P + E LDLV EED+FTH++ L+ + +D+LNV
Sbjct: 259 ESKIDMRVQYMIEVMFAVRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNPEDVLNV 318
Query: 292 FQYDPEYLMNEEKYTTLRREILXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXNKETIIDN 350
F+ DP ++ NEEKY L++EIL K T+ D
Sbjct: 319 FKMDPNFMENEEKYKALKKEILDEGDSESEPDQEAGSSDEEEEEDEEEDEDGQKVTVHDK 378
Query: 351 TETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQL 410
TE NLV+ RRTIYL I SSLDFEECAHKLL+M Q ELC+++ +D Q
Sbjct: 379 TEINLVSFRRTIYLAIQSSLDFEECAHKLLKMDFPESQTKELCNMI-LDCCA------QQ 431
Query: 411 RTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
RTYEKFFGLLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 432 RTYEKFFGLLAGRFCMLKKEYMESFEAIFKEQYDTIHRLETNKLRN 477
Score = 232 (86.7 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 45/64 (70%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD+I W VL CI L+EE TTSS RIF+KI FQELSEYMGL LN
Sbjct: 473 NKLRNVAKMFAHLLYTDSIPWSVLECIILSEETTTSSSRIFVKIFFQELSEYMGLPNLNA 532
Query: 547 KIKD 550
++KD
Sbjct: 533 RLKD 536
>TAIR|locus:2025797 [details] [associations]
symbol:AT1G80930 "AT1G80930" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006412 "translation" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 EMBL:CP002684
GO:GO:0005829 GO:GO:0005634 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 EMBL:AC011713
HOGENOM:HOG000212368 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 EMBL:AY139757 EMBL:BT004547
IPI:IPI00532679 PIR:C96842 RefSeq:NP_178208.1 UniGene:At.43915
ProteinModelPortal:Q9SAG7 STRING:Q9SAG7 PRIDE:Q9SAG7
EnsemblPlants:AT1G80930.1 GeneID:844433 KEGG:ath:AT1G80930
TAIR:At1g80930 InParanoid:Q9SAG7 OMA:DGHENGS PhylomeDB:Q9SAG7
ProtClustDB:CLSN2682123 Genevestigator:Q9SAG7 Uniprot:Q9SAG7
Length = 900
Score = 458 (166.3 bits), Expect = 2.5e-108, Sum P(3) = 2.5e-108
Identities = 91/172 (52%), Positives = 117/172 (68%)
Query: 13 PKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGN 72
P + + KTGG YIPP KL M + + DKSSVEYQR++W+ L+KSI+G VNKVN N
Sbjct: 318 PSENNAMALGKTGGVYIPPFKLARMMKEVEDKSSVEYQRLTWDALRKSINGLVNKVNASN 377
Query: 73 IGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRC 132
I I +LF EN+IRGRGL R+ +++Q ASP FT+V+AALV +IN+KFP + ELLL R
Sbjct: 378 IKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVINAKFPEVAELLLKRV 437
Query: 133 IQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDS 184
+ Q KR++KRNDK + +V FIAHLVNQQVA PT+DS
Sbjct: 438 VLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAEEIIALELVTILLGDPTDDS 489
Score = 437 (158.9 bits), Expect = 2.5e-108, Sum P(3) = 2.5e-108
Identities = 96/226 (42%), Positives = 139/226 (61%)
Query: 232 KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 291
+G+++KRVQY+IE L RK F+ P V +LDLV E+K++H ++LD D + L++
Sbjct: 525 EGEIDKRVQYLIESLFATRKAKFQGHPAVRPELDLV--EEKYSHDLSLDHEIDPETALDI 582
Query: 292 FQYDPEYLMNEEKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKETII-DN 350
F+ DP+++ NE+KY L++E+L ++ I D
Sbjct: 583 FKPDPDFVENEKKYEALKKELLGDEESEDEDGSDASSEDNDEEEDESDEEDEEQMRIRDE 642
Query: 351 TETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQL 410
TETNLV LRRTIYLTI SS+DFEE HKLL+++L+PGQE ELC I+ ++ Q
Sbjct: 643 TETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELC-IMLLECC------SQE 695
Query: 411 RTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
RTY +++GLL QRFC INK++ E+ F + YS +HRL+ NKLR+
Sbjct: 696 RTYLRYYGLLGQRFCMINKIHQENFEKCFVQQYSMIHRLETNKLRN 741
Score = 236 (88.1 bits), Expect = 2.5e-108, Sum P(3) = 2.5e-108
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAKFFAH L TDA+ WHVL+ I L EE+TTSS RIFIKILFQELSE++G+ LN+
Sbjct: 737 NKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNE 796
Query: 547 KIKDP 551
+++DP
Sbjct: 797 RLQDP 801
>UNIPROTKB|Q5ZKA3 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
EMBL:AJ720181 IPI:IPI00584173 RefSeq:NP_001026421.1
UniGene:Gga.22423 ProteinModelPortal:Q5ZKA3 STRING:Q5ZKA3
GeneID:424123 KEGG:gga:424123 CTD:57703 InParanoid:Q5ZKA3
OrthoDB:EOG4JM7P4 NextBio:20826498 Uniprot:Q5ZKA3
Length = 926
Score = 845 (302.5 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 186/394 (47%), Positives = 242/394 (61%)
Query: 6 TQQESSEPKTSTNI--LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHG 63
T +E++ K + + ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G
Sbjct: 115 THEEATSKKKKEEVDPILTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSING 174
Query: 64 SVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPS 123
VNKVN NI I +L QENI+RGRGLL+R+ILQAQ ASP FT+VYAALV IINSKFP+
Sbjct: 175 LVNKVNVSNIENIIHELLQENIVRGRGLLSRSILQAQGASPIFTHVYAALVAIINSKFPN 234
Query: 124 IGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTND 183
IGEL+L R I F++ ++RNDK LC+ S F+AHL+NQ VAH PT+D
Sbjct: 235 IGELILKRLILNFRKGYRRNDKQLCLTSSKFVAHLMNQNVAHEVLCLEMLTLLLERPTDD 294
Query: 184 SDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMI 243
S + K L+ P I++I F L + K++ RVQYMI
Sbjct: 295 SIEVAIGFLKES--GLKLTEVSPRG-INAI--FDRLRHILH-------ESKIDMRVQYMI 342
Query: 244 EVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEE 303
EV+ VRKD FKD P + E LDLV EED+FTH++ L+ + +D+LNVF+ DP ++ NEE
Sbjct: 343 EVMFAVRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNPEDVLNVFKMDPNFMENEE 402
Query: 304 KYTTLRREILXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXNKETIIDNTETNLVALRRTI 362
KY L++EIL K T+ D TE NLV TI
Sbjct: 403 KYKALKKEILDEGDSESEPDQEAGSSDEEEEEDEEEDEDGQKVTVHDKTEINLVPSVGTI 462
Query: 363 YLTIHSSLDFEECAHKLLRMQLKPGQESELCHIV 396
YL I SSLDFEECAHKLL+M Q ELC+++
Sbjct: 463 YLAIQSSLDFEECAHKLLKMDFPESQTKELCNMI 496
Score = 504 (182.5 bits), Expect = 3.5e-69, Sum P(2) = 3.5e-69
Identities = 107/226 (47%), Positives = 136/226 (60%)
Query: 232 KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 291
+ K++ RVQYMIEV+ VRKD FKD P + E LDLV EED+FTH++ L+ + +D+LNV
Sbjct: 331 ESKIDMRVQYMIEVMFAVRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNPEDVLNV 390
Query: 292 FQYDPEYLMNEEKYTTLRREILXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXNKETIIDN 350
F+ DP ++ NEEKY L++EIL K T+ D
Sbjct: 391 FKMDPNFMENEEKYKALKKEILDEGDSESEPDQEAGSSDEEEEEDEEEDEDGQKVTVHDK 450
Query: 351 TETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQL 410
TE NLV TIYL I SSLDFEECAHKLL+M Q ELC+++ +D Q
Sbjct: 451 TEINLVPSVGTIYLAIQSSLDFEECAHKLLKMDFPESQTKELCNMI-LDCCA------QQ 503
Query: 411 RTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
RTYEKFFGLLA RFC + K Y+ E IF+E Y T+HRL+ NKLR+
Sbjct: 504 RTYEKFFGLLAGRFCMLKKEYMESFEAIFKEQYDTIHRLETNKLRN 549
Score = 232 (86.7 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 45/64 (70%), Positives = 52/64 (81%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
+KLRNVAK FAH L+TD+I W VL CI L+EE TTSS RIF+KI FQELSEYMGL LN
Sbjct: 545 NKLRNVAKMFAHLLYTDSIPWSVLECIILSEETTTSSSRIFVKIFFQELSEYMGLPNLNA 604
Query: 547 KIKD 550
++KD
Sbjct: 605 RLKD 608
>POMBASE|SPBC13E7.01 [details] [associations]
symbol:cwf22 "splicing factor Cwf22" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 PomBase:SPBC13E7.01 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 GO:GO:0045292 eggNOG:NOG293831 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
OrthoDB:EOG4KPXKV EMBL:D89100 PIR:T39492 IntAct:Q9P6R9
STRING:Q9P6R9 KEGG:spo:SPBC13E7.01 NextBio:20801084 Uniprot:Q9P6R9
Length = 887
Score = 822 (294.4 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
Identities = 173/386 (44%), Positives = 243/386 (62%)
Query: 12 EPKTSTN-ILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNT 70
+PK ++ +++GG YIPPAKLK +Q ++D ++ EYQR+ WE LKKSI+G +NKVN
Sbjct: 77 DPKAQIKKLMETRSGGTYIPPAKLKALQAQLTDVNTPEYQRMQWEALKKSINGLINKVNK 136
Query: 71 GNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLN 130
NI I +LFQENIIRGR L R+I++AQAAS FT +YAA+ +IN+KFP IGELLL
Sbjct: 137 SNIRDIIPELFQENIIRGRALYCRSIMKAQAASLPFTPIYAAMTAVINTKFPQIGELLLT 196
Query: 131 RCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEP 190
R I QF++SF+RNDK++CI+S +FIAHL+NQ++AH PTNDS +E
Sbjct: 197 RLIVQFRKSFQRNDKSMCISSSSFIAHLINQKIAHEIVGLQILAVLLERPTNDS---IE- 252
Query: 191 YSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVR 250
+ L + + + S +++ + F T ++ +G+LE+R Q++IEVL Q R
Sbjct: 253 IAVMLLREIGAYLAEV-----STRAYNGVFERFRTILH---EGQLERRTQFIIEVLFQTR 304
Query: 251 KDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRR 310
KD FK+ P + ++LDLV EED+ TH ++LD D Q+ L +F YDP+Y NE+KY ++
Sbjct: 305 KDKFKNNPTIPQELDLVEEEDQITHYISLDDNLDVQESLGIFHYDPDYEENEKKYDAIKH 364
Query: 311 EILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKETIIDNTETNLVALRRTIYLTIHSSL 370
EIL K +ID T +LV LR++IYLTI SS+
Sbjct: 365 EILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQVIDQTNASLVNLRKSIYLTIMSSV 424
Query: 371 DFEECAHKLLRMQLKPGQESELCHIV 396
DFEEC HKLL++ L GQE ELC++V
Sbjct: 425 DFEECCHKLLKIDLPEGQEIELCNMV 450
Score = 478 (173.3 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
Identities = 96/225 (42%), Positives = 139/225 (61%)
Query: 232 KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 291
+G+LE+R Q++IEVL Q RKD FK+ P + ++LDLV EED+ TH ++LD D Q+ L +
Sbjct: 286 EGQLERRTQFIIEVLFQTRKDKFKNNPTIPQELDLVEEEDQITHYISLDDNLDVQESLGI 345
Query: 292 FQYDPEYLMNEEKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKETIIDNT 351
F YDP+Y NE+KY ++ EIL K +ID T
Sbjct: 346 FHYDPDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQVIDQT 405
Query: 352 ETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLR 411
+LV LR++IYLTI SS+DFEEC HKLL++ L GQE ELC++V I+ + Q R
Sbjct: 406 NASLVNLRKSIYLTIMSSVDFEECCHKLLKIDLPEGQEIELCNMV-IECN------SQER 458
Query: 412 TYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
TY KF+GL+ +RFC++++ + + EQ F+ Y T+HR + N+LR+
Sbjct: 459 TYAKFYGLIGERFCKLSRTWRSTYEQCFKNYYETIHRYETNRLRN 503
Score = 194 (73.4 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
Identities = 34/65 (52%), Positives = 50/65 (76%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
++LRN+A FFA+ L TD+IGW V C+ L E++TT+S RIF+KI+FQE+ E +GL L +
Sbjct: 499 NRLRNIALFFANLLSTDSIGWEVYDCVRLTEDDTTASSRIFLKIMFQEIVEALGLKSLVE 558
Query: 547 KIKDP 551
++ DP
Sbjct: 559 RLHDP 563
>DICTYBASE|DDB_G0267796 [details] [associations]
symbol:DDB_G0267796 "initiation factor eIF-4 gamma,
MA3 domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
dictyBase:DDB_G0267796 SUPFAM:SSF48371 GO:GO:0003677
EMBL:AAFI02000003 GO:GO:0005681 GO:GO:0003743 GO:GO:0000398
Gene3D:1.25.40.180 eggNOG:NOG293831 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 OMA:VENEERY
RefSeq:XP_647313.1 ProteinModelPortal:Q55G70 STRING:Q55G70
EnsemblProtists:DDB0233565 GeneID:8616124 KEGG:ddi:DDB_G0267796
InParanoid:Q55G70 Uniprot:Q55G70
Length = 925
Score = 789 (282.8 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
Identities = 198/510 (38%), Positives = 287/510 (56%)
Query: 7 QQESS---EPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHG 63
Q E S E K I + GG YIPP KL +MQ+ I DKSS EYQR+ W+ L+KSI+G
Sbjct: 308 QSEKSIKIEEKVLDAISKDRAGGVYIPPFKLAMMQKQIQDKSSPEYQRMEWDALRKSING 367
Query: 64 SVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPS 123
+NKV+ N+ IA +LF ENIIRGRGLL ++I+ AQ S FTNVY AL+ IIN+K P
Sbjct: 368 LINKVSYSNVKNIAVELFGENIIRGRGLLCQSIMVAQQVSLPFTNVYGALIAIINTKIPD 427
Query: 124 IGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTND 183
IGELLL R I QFK+SF+RNDK +CI S F+AHLVNQQV+ PT+D
Sbjct: 428 IGELLLKRLIDQFKKSFRRNDKPICIASTRFVAHLVNQQVSGILVPLEILTLLLDKPTDD 487
Query: 184 SDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMI 243
S +E L ++L + S Q+F ++ + F ++ +G++EKR QY I
Sbjct: 488 S---VEVAVNFFLECGQTLQEL------SSQTFNSIFARFKAILH---EGEIEKRTQYQI 535
Query: 244 EVL-AQVRKDNFKDFPDVIEDLDLVPEEDKFTH-LMTLDGVKDTQDILNVFQYDPEYLMN 301
E L QVR NF P +I +D+V ED+ TH ++++ +T+ LN F+ D ++L N
Sbjct: 536 EELFKQVRL-NFPQHPALIPSMDVVEIEDQITHDTLSIEENYNTETFLNFFKVDDKFLEN 594
Query: 302 EEKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKE---------------- 345
+E+Y ++R IL + +
Sbjct: 595 QEQYKQVKRSILGDSSSEEEDEDEDGNKNNVDSSSDDDSDDDDDDDDDDNYKPPITAGKV 654
Query: 346 ---TII-DNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTS 401
T+I D T+TNL+ LR+TIYL I SS DFEECAHKLL+++++ G E E+C+++ I
Sbjct: 655 INTTVIEDKTDTNLINLRKTIYLAIMSSKDFEECAHKLLKLKIQ-GHEDEICNML-IQCC 712
Query: 402 LWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVI 461
Q RTY F+G L+QRFC INK+Y ++ F E Y+ +HRL+ N+ R+ +
Sbjct: 713 ------SQERTYLPFYGNLSQRFCMINKIYRDLFDRCFAEQYAVIHRLETNRFRNIAKMY 766
Query: 462 NVVVKINGL--TRLQFLYLSSNVVSNYDKL 489
+ + L T LQ+++++ N ++ ++
Sbjct: 767 AHLFFTDALPWTTLQYVHINENETNSASRI 796
Score = 214 (80.4 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
Identities = 35/65 (53%), Positives = 52/65 (80%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
++ RN+AK +AH FTDA+ W L +H+NE ET S+ RIFIKILFQE++E++G+ KLN+
Sbjct: 757 NRFRNIAKMYAHLFFTDALPWTTLQYVHINENETNSASRIFIKILFQEMAEFLGIQKLNE 816
Query: 547 KIKDP 551
+++DP
Sbjct: 817 RLQDP 821
>ASPGD|ASPL0000053315 [details] [associations]
symbol:AN0289 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0005737 SUPFAM:SSF48371
GO:GO:0008380 EMBL:BN001308 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 EMBL:AACD01000005
eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 RefSeq:XP_657893.1
STRING:Q5BGP1 GeneID:2876063 KEGG:ani:AN0289.2 OrthoDB:EOG4KPXKV
Uniprot:Q5BGP1
Length = 868
Score = 685 (246.2 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 143/295 (48%), Positives = 195/295 (66%)
Query: 19 ILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIAR 78
+L+ ++GG YIPPA+L+ +Q I+DK+S EYQR++WE LKKSI+G +NKVN NI I
Sbjct: 106 LLNMRSGGTYIPPARLRALQAQITDKTSKEYQRMAWEALKKSINGLINKVNVSNIKYIVP 165
Query: 79 KLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKR 138
+LF EN++RGRGL R+I++AQAAS FT +YAA+ I+N+K P +GELLL+R I QF++
Sbjct: 166 ELFGENLVRGRGLFCRSIMKAQAASLPFTPIYAAMAAIVNTKLPQVGELLLSRLIIQFRK 225
Query: 139 SFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSKHKLHH 198
+FKRNDKA+CI+S TFIAHL NQQV H PT+DS ++ H
Sbjct: 226 AFKRNDKAVCISSTTFIAHLCNQQVVHEMLAAQILLLLLHKPTDDSVEIAVGLTREVGQH 285
Query: 199 LRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFP 258
L M P+ ++ F + + ++KRVQYMIEVL QVRKD +KD P
Sbjct: 286 LEE-MSGPI----ALAVFDQFRNILH-------EADIDKRVQYMIEVLFQVRKDRYKDNP 333
Query: 259 DVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREIL 313
+ E+LDLV EED+ TH + LD +TQD LN+F+YDP++ +EE Y L+ EIL
Sbjct: 334 AIKEELDLVEEEDQITHRIGLDDEIETQDGLNIFKYDPQWEEHEEAYKKLKAEIL 388
Score = 435 (158.2 bits), Expect = 4.6e-63, Sum P(2) = 4.6e-63
Identities = 97/222 (43%), Positives = 133/222 (59%)
Query: 235 LEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQY 294
++KRVQYMIEVL QVRKD +KD P + E+LDLV EED+ TH + LD +TQD LN+F+Y
Sbjct: 310 IDKRVQYMIEVLFQVRKDRYKDNPAIKEELDLVEEEDQITHRIGLDDEIETQDGLNIFKY 369
Query: 295 DPEYLMNEEKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKETIIDNTETN 354
DP++ +EE Y L+ EIL + I D + T+
Sbjct: 370 DPQWEEHEEAYKKLKAEILGEGSDDEDESGEDDESSDEESEEE-----RQMDIKDQSNTD 424
Query: 355 LVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYE 414
LV LRRTIYLTI SS+DFEEC HKL+++ L G E EL ++ I+ Q RTY
Sbjct: 425 LVNLRRTIYLTIMSSIDFEECCHKLMKISLPAGLEPELPSMI-IECC------SQERTYS 477
Query: 415 KFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
KF+GL+ +RF +IN+++ E F + Y T+HR + N+LR+
Sbjct: 478 KFYGLIGERFAKINRLWSDLFENAFAKYYDTIHRYETNRLRN 519
Score = 244 (91.0 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
++LRN+A+FF H L TDA+GWHVLS IHLNEEETTSS RIFIKILFQ+L+E++GL KL +
Sbjct: 515 NRLRNIARFFGHMLSTDALGWHVLSVIHLNEEETTSSSRIFIKILFQDLAEHLGLPKLRE 574
Query: 547 KIKD 550
++ D
Sbjct: 575 RMTD 578
>GENEDB_PFALCIPARUM|PFL1855w [details] [associations]
symbol:PFL1855w "cell cycle control protein,
putative" species:5833 "Plasmodium falciparum" [GO:0051726
"regulation of cell cycle" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0051726 EMBL:AE014188
GO:GO:0016070 Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 RefSeq:XP_001350777.1
ProteinModelPortal:Q8I540 IntAct:Q8I540 MINT:MINT-1580329
EnsemblProtists:PFL1855w:mRNA GeneID:811423 KEGG:pfa:PFL1855w
EuPathDB:PlasmoDB:PF3D7_1238300 HOGENOM:HOG000283489
ProtClustDB:CLSZ2848125 Uniprot:Q8I540
Length = 967
Score = 522 (188.8 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 118/294 (40%), Positives = 175/294 (59%)
Query: 23 KTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQ 82
K GG YIPP KL+ ++ +++K SV YQ+ W LKK I+ VNKVN NI + +LF+
Sbjct: 402 KAGGVYIPPFKLERLKTEVTNKKSVLYQKQEWMKLKKKINNIVNKVNIDNISEVCYELFE 461
Query: 83 ENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKR 142
N+IRG+GL +R ++ AQ +SP FTNV+ L+ I+NSKFP+IG L + R I F+R++KR
Sbjct: 462 CNLIRGKGLFSRALIHAQLSSPAFTNVFTCLLCIVNSKFPNIGLLTIQRIILHFRRAYKR 521
Query: 143 NDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSKHKLHHLRSL 202
NDK LC N+V FIAH++NQ++ H TNDS + Y ++ L +
Sbjct: 522 NDKILCFNTVKFIAHMINQRIVHEIVGLQLCSLLLQNITNDS-VQVCTYFLAEVGELYTN 580
Query: 203 MCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIE 262
+C + I F L+ D+ +G++ + QY IE L RK+NFKDFP V +
Sbjct: 581 ICRK--GLDII--FDRLK-----DIIQ--EGQINIKTQYDIEKLWNYRKNNFKDFPSVHD 629
Query: 263 DLDLVPEEDKFTH-LMTLDGVKDTQDILNVFQYDP--EYLMNEEKYTTLRREIL 313
DL+L+ EEDK H + LD ++Q+ LN+F+ P +Y E ++ + E+L
Sbjct: 630 DLNLIDEEDKIVHEIDILDESFNSQEELNIFREVPYEQYEEEENEWKHISEELL 683
Score = 234 (87.4 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 48/114 (42%), Positives = 73/114 (64%)
Query: 343 NKETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSL 402
N E I D TE L+ LR+ +YL+I SSL +EEC HKLL++ +K G E E+C+++ ID
Sbjct: 758 NHEEIHDMTEQYLINLRKNVYLSIMSSLSYEECVHKLLKLNIKKGYEIEICNML-IDCCC 816
Query: 403 WGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
+T++KF+ L A+R C++ K+Y E+ F S++T HRL+ KLR+
Sbjct: 817 ME------KTFQKFYALQAERLCKLKKIYQENFEKCFDNSFNTAHRLETAKLRN 864
Score = 189 (71.6 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 38/64 (59%), Positives = 44/64 (68%)
Query: 488 KLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQK 547
KLRN +KFFAH L+TDAI W + I L EE+TTSS RIFIKIL QEL+ +GL K
Sbjct: 861 KLRNCSKFFAHLLYTDAISWSIFKIIKLTEEDTTSSTRIFIKILLQELTNNLGLQAFYHK 920
Query: 548 IKDP 551
I P
Sbjct: 921 INHP 924
Score = 45 (20.9 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 229 NSSKGKLEKRV---QYMIEVLAQVRKDNFKDFPD 259
N K K++K+ + ++V + +RKDN K PD
Sbjct: 95 NYRKEKIKKKKDEKELKVKVASHIRKDNNK-IPD 127
Score = 37 (18.1 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 211 SSIQSFQALESFFSTD---VYNSSKGKLEKR 238
SS +S + + + S+D VYN + K +KR
Sbjct: 169 SSKRSREKKKEWSSSDNSSVYNMKRNKKDKR 199
>UNIPROTKB|Q8I540 [details] [associations]
symbol:PFL1855w "Cell cycle control protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0051726 "regulation of cell
cycle" evidence=ISS] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0051726 EMBL:AE014188 GO:GO:0016070
Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 RefSeq:XP_001350777.1
ProteinModelPortal:Q8I540 IntAct:Q8I540 MINT:MINT-1580329
EnsemblProtists:PFL1855w:mRNA GeneID:811423 KEGG:pfa:PFL1855w
EuPathDB:PlasmoDB:PF3D7_1238300 HOGENOM:HOG000283489
ProtClustDB:CLSZ2848125 Uniprot:Q8I540
Length = 967
Score = 522 (188.8 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 118/294 (40%), Positives = 175/294 (59%)
Query: 23 KTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQ 82
K GG YIPP KL+ ++ +++K SV YQ+ W LKK I+ VNKVN NI + +LF+
Sbjct: 402 KAGGVYIPPFKLERLKTEVTNKKSVLYQKQEWMKLKKKINNIVNKVNIDNISEVCYELFE 461
Query: 83 ENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKR 142
N+IRG+GL +R ++ AQ +SP FTNV+ L+ I+NSKFP+IG L + R I F+R++KR
Sbjct: 462 CNLIRGKGLFSRALIHAQLSSPAFTNVFTCLLCIVNSKFPNIGLLTIQRIILHFRRAYKR 521
Query: 143 NDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSKHKLHHLRSL 202
NDK LC N+V FIAH++NQ++ H TNDS + Y ++ L +
Sbjct: 522 NDKILCFNTVKFIAHMINQRIVHEIVGLQLCSLLLQNITNDS-VQVCTYFLAEVGELYTN 580
Query: 203 MCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIE 262
+C + I F L+ D+ +G++ + QY IE L RK+NFKDFP V +
Sbjct: 581 ICRK--GLDII--FDRLK-----DIIQ--EGQINIKTQYDIEKLWNYRKNNFKDFPSVHD 629
Query: 263 DLDLVPEEDKFTH-LMTLDGVKDTQDILNVFQYDP--EYLMNEEKYTTLRREIL 313
DL+L+ EEDK H + LD ++Q+ LN+F+ P +Y E ++ + E+L
Sbjct: 630 DLNLIDEEDKIVHEIDILDESFNSQEELNIFREVPYEQYEEEENEWKHISEELL 683
Score = 234 (87.4 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 48/114 (42%), Positives = 73/114 (64%)
Query: 343 NKETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSL 402
N E I D TE L+ LR+ +YL+I SSL +EEC HKLL++ +K G E E+C+++ ID
Sbjct: 758 NHEEIHDMTEQYLINLRKNVYLSIMSSLSYEECVHKLLKLNIKKGYEIEICNML-IDCCC 816
Query: 403 WGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
+T++KF+ L A+R C++ K+Y E+ F S++T HRL+ KLR+
Sbjct: 817 ME------KTFQKFYALQAERLCKLKKIYQENFEKCFDNSFNTAHRLETAKLRN 864
Score = 189 (71.6 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 38/64 (59%), Positives = 44/64 (68%)
Query: 488 KLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQK 547
KLRN +KFFAH L+TDAI W + I L EE+TTSS RIFIKIL QEL+ +GL K
Sbjct: 861 KLRNCSKFFAHLLYTDAISWSIFKIIKLTEEDTTSSTRIFIKILLQELTNNLGLQAFYHK 920
Query: 548 IKDP 551
I P
Sbjct: 921 INHP 924
Score = 45 (20.9 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 229 NSSKGKLEKRV---QYMIEVLAQVRKDNFKDFPD 259
N K K++K+ + ++V + +RKDN K PD
Sbjct: 95 NYRKEKIKKKKDEKELKVKVASHIRKDNNK-IPD 127
Score = 37 (18.1 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 211 SSIQSFQALESFFSTD---VYNSSKGKLEKR 238
SS +S + + + S+D VYN + K +KR
Sbjct: 169 SSKRSREKKKEWSSSDNSSVYNMKRNKKDKR 199
>RGD|1590641 [details] [associations]
symbol:LOC680519 "similar to CG12750-PA" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 RGD:1590641
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379 OrthoDB:EOG4JM7P4
IPI:IPI00766583 Ensembl:ENSRNOT00000058354 UCSC:RGD:1590641
Uniprot:D3ZEL0
Length = 453
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 152/312 (48%), Positives = 215/312 (68%)
Query: 5 ATQQESS---EPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSI 61
+TQ+E + + K + L ++TGGAYIPPAKL++MQ+ I++K+S+ YQR+SWE +KKSI
Sbjct: 108 STQEEPTSKKKKKDEQDPLLTRTGGAYIPPAKLRMMQEQITEKTSLAYQRMSWEAMKKSI 167
Query: 62 HGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKF 121
+G +NKVN NI II ++L QENI+RGRGLL+R++LQAQ+ASP FT++YAALV IINSKF
Sbjct: 168 NGLINKVNICNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHLYAALVAIINSKF 227
Query: 122 PSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPT 181
P IGEL+L R I F++ ++RNDK LC+ + F+AHL NQ VAH PT
Sbjct: 228 PQIGELILKRLIINFRKGYRRNDKQLCLTASKFVAHLTNQNVAHEVLCLEILTLLLERPT 287
Query: 182 NDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQY 241
+DS + K L+ P I++I F+ L + V+ S +++KRVQY
Sbjct: 288 DDSVEVAIGFLKEC--GLKLTQVSPRG-INAI--FERLRNI----VHES---EIDKRVQY 335
Query: 242 MIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMN 301
MIEV+ VRKD FKD P ++E LDLV E+D+FTH++ L+ + +D+LNVF+ DP ++ N
Sbjct: 336 MIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMEN 395
Query: 302 EEKYTTLRREIL 313
EEKY +++EIL
Sbjct: 396 EEKYKVIKKEIL 407
>CGD|CAL0000928 [details] [associations]
symbol:orf19.1771 species:5476 "Candida albicans" [GO:0005684
"U2-type spliceosomal complex" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 CGD:CAL0000928 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
KO:K13100 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 EMBL:AACQ01000104 EMBL:AACQ01000105
RefSeq:XP_714376.1 RefSeq:XP_714416.1 ProteinModelPortal:Q59XY0
STRING:Q59XY0 GeneID:3643938 GeneID:3643966 KEGG:cal:CaO19.1771
KEGG:cal:CaO19.9340 Uniprot:Q59XY0
Length = 648
Score = 240 (89.5 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 49/115 (42%), Positives = 72/115 (62%)
Query: 49 YQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTN 108
YQR W KK+I + ++ NI +LFQ N++R +GL R I++ Q T
Sbjct: 20 YQRTKWIETKKNIKQLLQQLTPSNIKQTVLQLFQINLLRYQGLFIREIMKQQIRITTNAE 79
Query: 109 VYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQV 163
+Y +L+ IINSK P IGELL+NR + QFK+++ +N+K L +S+ FI L+NQQV
Sbjct: 80 LYGSLISIINSKIPEIGELLINRLVLQFKKNYLQNNKNLINSSIIFICQLINQQV 134
Score = 224 (83.9 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 60/223 (26%), Positives = 110/223 (49%)
Query: 243 IEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNE 302
IE + ++ +++FK+ + LDLV EDK TH++TL+ ++D LNVF D EYL +E
Sbjct: 222 IEYILKLARNDFKNISIIKNGLDLVETEDKETHVITLEDKLYSRDHLNVFSVDEEYLDHE 281
Query: 303 EKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKETIIDNTETNLVALRRTI 362
+Y L++EIL +E I D +++ L+ ++T+
Sbjct: 282 NEYIELKKEILGETDHEDENENEIQVIETTKNY--------EEKITDMSQSELLQYQKTV 333
Query: 363 YLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWG--LFGD-------QLRTY 413
YLTI SS+ +E HKLL++ K ++++ + T+ + D Q +TY
Sbjct: 334 YLTIMSSMSSDEAVHKLLKLNFKSKIKNKIKNKTKTKTNSNDNEILADMVIKCCSQEKTY 393
Query: 414 EKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRD 456
K++G++ ++ N + ++F+ Y + + N LR+
Sbjct: 394 SKYYGIIGEKLISRNDHWHNLFIKLFKYYYDIIENFETNSLRN 436
Score = 115 (45.5 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 22/71 (30%), Positives = 44/71 (61%)
Query: 481 NVVSNYD--KLRNVAKFFAHQLFTDAIGW-HVLSCIHLNEEETTSSGRIFIKILFQELSE 537
+++ N++ LRN+ KFF H +D + S I L E++T + RI +K +FQE+ E
Sbjct: 424 DIIENFETNSLRNLGKFFGHLFASDKLALDQAWSNIKLTEQDTNPAKRILLKFIFQEMIE 483
Query: 538 YMGLSKLNQKI 548
+G++++ +++
Sbjct: 484 ELGINEVKERL 494
>SGD|S000003510 [details] [associations]
symbol:CWC22 "Spliceosome-associated protein that is required
for pre-mRNA splicing" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005684 "U2-type spliceosomal complex" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SGD:S000003510
GO:GO:0005737 SUPFAM:SSF48371 EMBL:BK006941 GO:GO:0003677
GO:GO:0003723 GO:GO:0000398 Gene3D:1.25.40.180 GO:GO:0005684
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
OrthoDB:EOG4KPXKV EMBL:Z73063 PIR:S64613 RefSeq:NP_011794.3
RefSeq:NP_011800.3 ProteinModelPortal:P53333 DIP:DIP-1869N
IntAct:P53333 MINT:MINT-408252 STRING:P53333 PaxDb:P53333
PeptideAtlas:P53333 EnsemblFungi:YGR278W GeneID:853195
GeneID:853201 KEGG:sce:YGR278W KEGG:sce:YGR284C CYGD:YGR278w
HOGENOM:HOG000112091 OMA:QITHRIG NextBio:973356
Genevestigator:P53333 GermOnline:YGR278W Uniprot:P53333
Length = 577
Score = 142 (55.0 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 33/128 (25%), Positives = 62/128 (48%)
Query: 40 SISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQ- 98
+I D+ +++QR +WE ++ + ++ + N+ R LFQ NI+ GR ++ + ++
Sbjct: 5 TIQDED-IKFQRENWEMIRSHVSPIISNLTMDNLQESHRDLFQVNILIGRNIICKNVVDF 63
Query: 99 -AQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAH 157
+ +AL+ ++NS P IGE L + F + F R D C N + ++
Sbjct: 64 TLNKQNGRLIPALSALIALLNSDIPDIGETLAKELMLMFVQQFNRKDYVSCGNILQCLSI 123
Query: 158 LVNQQVAH 165
L V H
Sbjct: 124 LFLYDVIH 131
Score = 130 (50.8 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 32/110 (29%), Positives = 60/110 (54%)
Query: 347 IIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLF 406
I D T TN V ++ IYL + SSL +E AHKLL++++ + + I+ I +SL
Sbjct: 280 IYDMTSTNDVEFKKKIYLVLKSSLSGDEAAHKLLKLKIANNLKKSVVDII-IKSSL---- 334
Query: 407 GDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYST-VHRLDINKLR 455
Q T+ KF+ +L++R ++ + + F ++Y+ + + ++LR
Sbjct: 335 --QESTFSKFYSILSERMITFHRSWQTAYNETFEQNYTQDIEDYETDQLR 382
Score = 120 (47.3 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 487 DKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 546
D+LR + KF+ H + + + L I L EEE+ GRIFIK LFQEL +GL +L
Sbjct: 379 DQLRILGKFWGHLISYEFLPMDCLKIIKLTEEESCPQGRIFIKFLFQELVNELGLDELQL 438
Query: 547 KI 548
++
Sbjct: 439 RL 440
Score = 48 (22.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 408 DQLRTYEKFFG-LLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVK 466
DQLR KF+G L++ F ++ + + L + E R+ I L ++ +N +
Sbjct: 379 DQLRILGKFWGHLISYEFLPMDCLKIIKLTE---EESCPQGRIFIKFLFQEL--VNEL-- 431
Query: 467 INGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQL-FTDAIGWHVLS 511
GL LQ L L+S+ + L A+ + + F AIG +L+
Sbjct: 432 --GLDELQ-LRLNSSKLDGMFPLEGDAEHIRYSINFFTAIGLGLLT 474
>UNIPROTKB|F1M323 [details] [associations]
symbol:F1M323 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 IPI:IPI00562844
Ensembl:ENSRNOT00000029211 OMA:IERRVEY Uniprot:F1M323
Length = 226
Score = 195 (73.7 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 48/140 (34%), Positives = 71/140 (50%)
Query: 234 KLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQ 293
++ RVQYMIEV+ + KD FKD ++E LDL+ E FTH+++L+ +D+LNVF+
Sbjct: 82 EINTRVQYMIEVM--LAKDRFKDQSVILEGLDLLEEGGHFTHMLSLEDDYSPEDVLNVFK 139
Query: 294 YDPEYLMNEEKYTTLRREILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNK---ETII-D 349
P ++ NEEKY ++ EIL + + II D
Sbjct: 140 TGPSFMENEEKYKAIKNEILDEGDSDSNTDREVGNSEEEEEEEEEVEGQEEGGQKVIIRD 199
Query: 350 NTETNLVALRRTIYLTIHSS 369
TE +LV+ T YL I S+
Sbjct: 200 RTEISLVSFHHTTYLAIQST 219
Score = 94 (38.1 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 138 RSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDS 184
+ +RNDK C+ + F+AHL+NQ VAH PT+DS
Sbjct: 7 KGHQRNDKQRCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDS 53
>UNIPROTKB|F1LX25 [details] [associations]
symbol:F1LX25 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR016021 InterPro:IPR016024 SUPFAM:SSF48371
GO:GO:0016070 Gene3D:1.25.40.180 IPI:IPI00948250
Ensembl:ENSRNOT00000065422 Uniprot:F1LX25
Length = 211
Score = 195 (73.7 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 38/80 (47%), Positives = 57/80 (71%)
Query: 234 KLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQ 293
++ KRVQYMIEV+ VRKD FK P ++E LDLV E+ +FT ++ L+ + +D+ NVF+
Sbjct: 86 EVNKRVQYMIEVMFAVRKDGFKGHPVILEGLDLVEEDCQFTQMLPLEDNYNPEDV-NVFK 144
Query: 294 YDPEYLMNEEKYTTLRREIL 313
DP ++ N EKY +++EIL
Sbjct: 145 TDPNFMENGEKYKVIKKEIL 164
Score = 184 (69.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 52/156 (33%), Positives = 82/156 (52%)
Query: 133 IQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYS 192
I F++ ++RND+ LC+ + F+AHL+NQ V H PT+DS + +
Sbjct: 2 ILNFRKGYQRNDQ-LCLTASKFVAHLINQNVPHEVLCLEMLTLLLERPTDDSVEVADDF- 59
Query: 193 KHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKD 252
LR C L + + + + F D+ N ++ KRVQYMIEV+ VRKD
Sbjct: 60 ------LRE--CGLL--APGVT--RGINAIF--DLRNILH-EVNKRVQYMIEVMFAVRKD 104
Query: 253 NFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDI 288
FK P ++E LDLV E+ +FT ++ L+ + +D+
Sbjct: 105 GFKGHPVILEGLDLVEEDCQFTQMLPLEDNYNPEDV 140
Score = 67 (28.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 346 TIIDNTETNLVALRRTIYLTIHSS 369
TI D TE NL++ RTIYL I S+
Sbjct: 181 TIRDKTEINLLSFHRTIYLAIQST 204
>UNIPROTKB|Q5C9Z4 [details] [associations]
symbol:NOM1 "Nucleolar MIF4G domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0005730 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 eggNOG:NOG300777 EMBL:AY576779 EMBL:AF107455
EMBL:BC007902 IPI:IPI00145593 RefSeq:NP_612409.1 UniGene:Hs.15825
ProteinModelPortal:Q5C9Z4 IntAct:Q5C9Z4 MINT:MINT-1185381
STRING:Q5C9Z4 PhosphoSite:Q5C9Z4 DMDM:74707675 PaxDb:Q5C9Z4
PRIDE:Q5C9Z4 DNASU:64434 Ensembl:ENST00000275820 GeneID:64434
KEGG:hsa:64434 UCSC:uc003wmy.3 CTD:64434 GeneCards:GC07P156742
HGNC:HGNC:13244 MIM:611269 neXtProt:NX_Q5C9Z4 PharmGKB:PA25946
HOGENOM:HOG000044155 HOVERGEN:HBG098839 InParanoid:Q5C9Z4
OMA:LSLIFTR OrthoDB:EOG4CRKZQ GenomeRNAi:64434 NextBio:66459
Bgee:Q5C9Z4 CleanEx:HS_NOM1 Genevestigator:Q5C9Z4 Uniprot:Q5C9Z4
Length = 860
Score = 122 (48.0 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 358 LRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFF 417
+RR I+ TI +S DF + KLL++ LK QE E+ H++ +D L Q +TY F+
Sbjct: 655 IRRNIFCTIMTSEDFLDAFEKLLKLGLKDQQEREIIHVL-MDCCL------QEKTYNPFY 707
Query: 418 GLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLT 471
LA +FC+ + + + + + + L + V ++ ++K L+
Sbjct: 708 AFLASKFCEYERRFQMTFQFSIWDKFRDLENLPATNFSNLVHLVAHLLKTKSLS 761
Score = 99 (39.9 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 43/173 (24%), Positives = 79/173 (45%)
Query: 5 ATQQESSEPKTSTNILSSKT----GGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKS 60
A +E SE + ++ K+ G YIPP ++ ++++ K E +R LKK
Sbjct: 311 AEDEEKSENSSEDGDITDKSLCGSGEKYIPP-HVRQAEETVDFKKKEELER-----LKKH 364
Query: 61 IHGSVNKVNTGNIGIIARKLFQENIIRGR----GLLTRTILQA---QAASPTFTNV-YAA 112
+ G +N+++ N+ I+ +L + + R LT ++ A +A P+ + +
Sbjct: 365 VKGLLNRLSEPNMASISGQLEELYMAHSRKDMNDTLTSALMGACVTASAMPSRLMMEHVL 424
Query: 113 LVDIINSKFP-SIGELLLNRCIQQFKRSFKRNDKAL-CINSVTFIAHLVNQQV 163
LV I++ +G L +++F +K + C N T IAHL N V
Sbjct: 425 LVSILHHTVGIEVGAHFLEAVVRKFDAIYKYGSEGKECDNLFTVIAHLYNFHV 477
Score = 38 (18.4 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 4/23 (17%), Positives = 15/23 (65%)
Query: 236 EKRVQYMIEVLAQVRKDNFKDFP 258
+ R+++M+E + ++ ++ + P
Sbjct: 542 QTRIRFMLETMLALKNNDMRKIP 564
>UNIPROTKB|E1B8C2 [details] [associations]
symbol:LOC618228 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
GeneTree:ENSGT00550000075087 OMA:LSLIFTR EMBL:DAAA02012148
EMBL:DAAA02012149 IPI:IPI00839345 Ensembl:ENSBTAT00000043572
Uniprot:E1B8C2
Length = 847
Score = 117 (46.2 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 358 LRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFF 417
+RR I+ T+ +S DF + KLL++ LK QE E+ H++ +D L Q +TY F+
Sbjct: 648 VRRNIFCTVMTSEDFLDAFEKLLKLGLKDQQEREIVHVL-VDCCL------QEKTYNPFY 700
Query: 418 GLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGL 470
LA +FC + + + + + + L + V ++ ++K L
Sbjct: 701 AFLAGKFCAYERRFQMTFQFSIWDKFRDLENLSATSFANLVHLVAHLLKTKSL 753
Score = 101 (40.6 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 41/168 (24%), Positives = 75/168 (44%)
Query: 6 TQQESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSV 65
++ S +T L + GG Y+PP ++ ++++ + E +R LKK + G +
Sbjct: 310 SETPSEAVRTDDQSLG-ENGGKYVPP-HVRRVEETEDAQKKEELER-----LKKQVKGLI 362
Query: 66 NKVNTGNIGIIARKLFQENIIRGR----GLLTRTILQAQAAS---PT-FTNVYAALVDII 117
N+++ N+ I+ +L + + R LT +L A A P + LV ++
Sbjct: 363 NRLSEPNLASISSQLEELYMGHSRKDMNATLTTVVLSACAPDTVMPARLLMEHVLLVSVL 422
Query: 118 NSKFP-SIGELLLNRCIQQFKRSFK-RNDKALCINSVTFIAHLVNQQV 163
+ +G L +++F ++K R D C N IAHL N V
Sbjct: 423 HRTVGLEVGAHFLEAVVRRFDDAYKSRRDGKECDNLFAVIAHLYNFHV 470
Score = 40 (19.1 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 236 EKRVQYMIEVLAQVRKDNFKDFP 258
+ RV++M+E L ++ ++ + P
Sbjct: 535 QTRVRFMLETLLALKNNDVRKIP 557
>ZFIN|ZDB-GENE-060503-321 [details] [associations]
symbol:nom1 "nucleolar protein with MIF4G domain 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
ZFIN:ZDB-GENE-060503-321 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
GeneTree:ENSGT00550000075087 EMBL:BX247878 IPI:IPI00486578
Ensembl:ENSDART00000115152 ArrayExpress:F1REG2 Bgee:F1REG2
Uniprot:F1REG2
Length = 835
Score = 113 (44.8 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 44/171 (25%), Positives = 77/171 (45%)
Query: 7 QQESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVN 66
+ ES + + L+ T G Y+PP ++++ K E ++ LK+S+ G +N
Sbjct: 292 EAESEQKNPESQELNPATTGKYVPPH----LREAADSKRKAELEK-----LKRSVKGLIN 342
Query: 67 KVNTGNIGIIARKLFQENIIRGRGLLTRT---ILQAQAASPTFTNV-----YAALVDIIN 118
+++ N+ I+ +L + + R + T IL A +P + LV +++
Sbjct: 343 RLSQPNMASISSQLEELYMNTSRKDMNDTLTDILLAACVTPALMPERLLMEHILLVSVLH 402
Query: 119 -SKFPSIGELLLNRCIQQFKRSFKR---NDKALCINSVTFIAHLVNQQVAH 165
S +G L ++QF R + DK C N V+ IAHL N V H
Sbjct: 403 YSVGLEVGAHFLETVVRQFDRIYSELDGTDKE-CDNLVSIIAHLYNFHVVH 452
Score = 104 (41.7 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 358 LRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFF 417
+RR I+ + SS DF + KLLR+ LK QE E+ H++ +D L Q + + +F+
Sbjct: 629 VRRNIFCVLMSSEDFLDAYEKLLRLGLKDQQEREIVHVL-MDCCL------QEKMFNRFY 681
Query: 418 GLLAQRFCQINKMY 431
+LA++ C ++ +
Sbjct: 682 AVLAEKLCSHDRRF 695
Score = 38 (18.4 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 4/23 (17%), Positives = 15/23 (65%)
Query: 236 EKRVQYMIEVLAQVRKDNFKDFP 258
+ R+++M+E + ++ ++ + P
Sbjct: 515 QTRIRFMLETMMALKNNDMRKIP 537
>TAIR|locus:504956291 [details] [associations]
symbol:AT1G52325 "AT1G52325" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GO:GO:0003743 InterPro:IPR003891
Pfam:PF02847 IPI:IPI00525693 RefSeq:NP_683421.1 UniGene:At.20580
UniGene:At.52154 EnsemblPlants:AT1G52325.1 GeneID:841663
KEGG:ath:AT1G52325 OMA:ETFESIF PhylomeDB:F4ICW3 Uniprot:F4ICW3
Length = 145
Score = 91 (37.1 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 368 SSLDFEECAHKLLRMQLKPGQESELCHIV 396
SSLDFEE HKLL+++L+ GQ ELC +V
Sbjct: 2 SSLDFEEAGHKLLKIRLEQGQGMELCVMV 30
Score = 90 (36.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 518 EETTSSGRIFIKILFQELSEYMGLSKLNQKIKDP 551
E++TSS IF+K LF +LSE + + LN+K++DP
Sbjct: 46 EDSTSSSLIFLKTLFLQLSELLRIKLLNEKLQDP 79
>MGI|MGI:1861749 [details] [associations]
symbol:Nom1 "nucleolar protein with MIF4G domain 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0016070 "RNA metabolic process" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 MGI:MGI:1861749 SUPFAM:SSF48371
GO:GO:0005730 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 eggNOG:NOG300777 GeneTree:ENSGT00550000075087
CTD:64434 HOGENOM:HOG000044155 HOVERGEN:HBG098839 OMA:LSLIFTR
OrthoDB:EOG4CRKZQ EMBL:AK148406 EMBL:AC171500 IPI:IPI00652660
RefSeq:NP_001028629.2 UniGene:Mm.262815 ProteinModelPortal:Q3UFM5
STRING:Q3UFM5 PhosphoSite:Q3UFM5 PRIDE:Q3UFM5
Ensembl:ENSMUST00000001611 GeneID:433864 KEGG:mmu:433864
UCSC:uc008wuj.1 InParanoid:Q3UFM5 NextBio:409051 Bgee:Q3UFM5
CleanEx:MM_GM1040 Genevestigator:Q3UFM5 Uniprot:Q3UFM5
Length = 854
Score = 124 (48.7 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 44/145 (30%), Positives = 69/145 (47%)
Query: 358 LRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFF 417
+RR I+ T+ +S DF + KLL++ LK QE E+ HI+ +D L Q +TY F+
Sbjct: 649 VRRIIFCTLMTSEDFLDAFEKLLKLGLKDQQEREIVHIL-MDCCL------QEKTYNPFY 701
Query: 418 GLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLY 477
LA +FC + + + F+ S R D+ L D N+V + L R + L
Sbjct: 702 AFLASKFCDYERRF----QMTFQFSIWDKFR-DLENL-PDTKFSNLVHLLAHLLRTKSLP 755
Query: 478 LSSNVVSNYDKLRNVAKFFAHQLFT 502
LS V + +L F ++ T
Sbjct: 756 LSVLKVVEFSELDKPRVHFLRRVLT 780
Score = 82 (33.9 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 36/153 (23%), Positives = 71/153 (46%)
Query: 21 SSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKL 80
S ++G YIPP +L + + D E + LKK + G +N+++ N+ I+ +L
Sbjct: 326 SVESGEKYIPP---RLRNEEVIDVHKKE----ELDRLKKHVKGLINRLSEPNMASISGQL 378
Query: 81 FQENIIRGR----GLLTRTILQA---QAASPTFTNV-YAALVDIINSKFP-SIGELLLNR 131
+ + R LT ++ A +A P+ + + LV I++ +G L
Sbjct: 379 EELYMAHSRKDMNDTLTTALMDACVTASAMPSRLMMEHVFLVSILHHTVGIEVGACFLEA 438
Query: 132 CIQQFKRSFKRNDKALCINSV-TFIAHLVNQQV 163
+++F ++ + ++++ T IAHL N V
Sbjct: 439 VVKKFDAIYRDGGEGKELDNLFTMIAHLYNFHV 471
Score = 40 (19.1 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 236 EKRVQYMIEVLAQVRKDNFKDFP 258
+ RV++M+E + ++ ++ + P
Sbjct: 536 QNRVRFMLETMLALKNNDLRKIP 558
>UNIPROTKB|F1P1C9 [details] [associations]
symbol:NOM1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
GeneTree:ENSGT00550000075087 OMA:LSLIFTR EMBL:AADN02000357
IPI:IPI00581152 Ensembl:ENSGALT00000010388 Uniprot:F1P1C9
Length = 825
Score = 104 (41.7 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 40/145 (27%), Positives = 66/145 (45%)
Query: 358 LRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFF 417
+RR+I+ + +S DF + KLL++ LK QE E+ H++ L+ Q +TY F+
Sbjct: 619 IRRSIFCVLMTSEDFMDAFEKLLKLGLKDQQEREIVHVI-----LYCCL--QEKTYNPFY 671
Query: 418 GLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLY 477
LA + C + + + F+ S R D+ L + N+V + L R + L
Sbjct: 672 AFLASKICGYERRF----QVTFQFSIWDKIR-DLGNLSASA-ISNLVSLLVHLVRTKSLP 725
Query: 478 LSSNVVSNYDKLRNVAKFFAHQLFT 502
LS V + L F Q+ T
Sbjct: 726 LSVLKVIEFGDLDKPKVRFLRQVLT 750
Score = 98 (39.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 38/149 (25%), Positives = 69/149 (46%)
Query: 28 YIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIA---RKLFQEN 84
Y+PP +++ Q+++ DK E R LKK ++G +N+++ N+ I +L+ N
Sbjct: 302 YVPP-QVRKAQEALDDKKREELGR-----LKKMVNGLINRLSEPNLSSITGQLEELYMAN 355
Query: 85 IIRGRG-LLTRTILQA---QAASPTFTNV-YAALVDIINSKFPS-IGELLLNRCIQQFKR 138
+ LT ++ A A P + + LV +++ + +G L +++F
Sbjct: 356 SRKDMNETLTSILMNACVTAVAMPARLMMEHVLLVSVLHHTVGTEVGAHFLEAVVKKFDE 415
Query: 139 SFKRNDKA--LCINSVTFIAHLVNQQVAH 165
R+D C N + IAHL N V H
Sbjct: 416 -LSRSDAEGKECENLLALIAHLYNFHVVH 443
Score = 43 (20.2 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 234 KLEKRVQYMIEVLAQVRKDNFKDFP 258
K + RV++M+E + +R ++ + P
Sbjct: 504 KDQTRVRFMLETMLALRNNDMRKIP 528
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 551 508 0.00086 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 612 (65 KB)
Total size of DFA: 287 KB (2151 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.15u 0.08s 39.23t Elapsed: 00:00:14
Total cpu time: 39.16u 0.08s 39.24t Elapsed: 00:00:14
Start: Thu Aug 15 13:36:55 2013 End: Thu Aug 15 13:37:09 2013