RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7791
(551 letters)
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 262
Score = 117 bits (294), Expect = 2e-30
Identities = 32/237 (13%), Positives = 82/237 (34%), Gaps = 24/237 (10%)
Query: 55 ETLKKSIHGSVNKVNTGNIGIIAR--KLFQENIIRGRGLLTRTILQAQAASPTFTNVYAA 112
+ L+ I K + + + ++ + + R + P +Y
Sbjct: 1 DHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTT 60
Query: 113 LVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEI 172
LV ++N++ + G + I+Q K S K N+ + V F++ LVN V ++ +
Sbjct: 61 LVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAM 120
Query: 173 LTLLVETPTND------SDFSLE------PYSKHKLHH-----LRSLMCMPLWWISSIQS 215
V + D+ + P+ +L+ + + ++ Q
Sbjct: 121 FENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQK 180
Query: 216 F-QALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEED 271
+ ++ D + E+ + + + +++KD +++ + L
Sbjct: 181 THVPMLQVWTADKPHPQ----EEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILC 233
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 99.7 bits (248), Expect = 3e-24
Identities = 31/233 (13%), Positives = 76/233 (32%), Gaps = 19/233 (8%)
Query: 57 LKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDI 116
++K ++ ++KV T + RKL ++ + + ++ + A L+
Sbjct: 8 VRKLLYKDLSKVTTEKVLRQMRKLPWQDQ-EVKDYVICCMINIWNVKYNSIHCVANLLAG 66
Query: 117 INSKFPSIGELLLNRCIQQFKRSFKRNDKALC---INSVTFIAHLVNQQVAHEIIVLEIL 173
+ +G +++ ++ + + N I+S F+ L N ++ ++ L
Sbjct: 67 LVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTL 126
Query: 174 TLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISS--------------IQSFQAL 219
N L +R L+C L + FQ
Sbjct: 127 YSFTSFGVNPDGSPSSLDPPEHLFRIR-LVCTILDTCGQYFDRGSSKRKLDCFLVYFQRY 185
Query: 220 ESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDK 272
+ + + + YMI ++ + K + E + V + ++
Sbjct: 186 VWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLER 238
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 84.1 bits (207), Expect = 7e-19
Identities = 34/252 (13%), Positives = 89/252 (35%), Gaps = 55/252 (21%)
Query: 48 EYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGL--LTRTILQAQAASPT 105
+ + I + L + + +NK+ + +++ + L + + + P+
Sbjct: 2 DPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPS 61
Query: 106 FTNVYAALVDIINSKFPSIGE----------LLLNRCIQQFKRSFKRND----------- 144
F+ YA + + + + + LLLNRC ++F++ +D
Sbjct: 62 FSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEA 121
Query: 145 ---------------------KALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTND 183
+ I ++ FI L ++ E I+ + + L++ +
Sbjct: 122 ASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE 181
Query: 184 SDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMI 243
S L L L+ + ++ ++ +F+ + K R+++M+
Sbjct: 182 S-----------LECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFML 230
Query: 244 EVLAQVRKDNFK 255
+ + +R N+
Sbjct: 231 QDVIDLRLCNWV 242
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 31.7 bits (72), Expect = 0.068
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 319 DDEDGDDEEDEDEEESEAEEGEKENKETIIDN 350
D+ED D +D D+ E + + EN E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQE 34
Score = 31.7 bits (72), Expect = 0.070
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 313 LGDEDED----DEDGDDEEDEDEEESEAEEGEKENKETIIDNTETNLVALRRTI-YLT 365
+ D +++ D D +E++ ++ AEE +EN E + R T Y+T
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMT 58
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 33.0 bits (75), Expect = 0.085
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 285 TQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEGEKENK 344
+ ++VF + ++ EK T + +L DDE G +E+ D + A + NK
Sbjct: 330 LPNFMDVFTWSLPFVG--EKVTEMLVNVLNICS-DDELGSEEDGFDGATAAARKEVIRNK 386
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 30.7 bits (69), Expect = 0.45
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 302 EEKYTTL---RREIL-GDEDEDDEDGDDEEDEDEEESEAEEGEKENKETIIDNTETN 354
+KY + R I+ G E E ++ E +E E E ++ D+ E
Sbjct: 56 LQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 28.6 bits (64), Expect = 0.60
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 298 YLMNEEKYTTLRREILGDEDEDDEDGDDEE-DEDEEESEAEEGEKENKET 346
Y Y + LG + + + + DE E +E E EKEN +
Sbjct: 49 YFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLS 98
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 28.9 bits (64), Expect = 0.73
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 390 SELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRL 449
+L + H+D S L L Q + + ++ + L
Sbjct: 17 EQLLLVTHLDLSHNRLRAL----PPALAALRCLEVLQASDNALENVDGVANLPRLQELLL 72
Query: 450 DINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRN 491
N+L+ + + RL L L N + + ++
Sbjct: 73 CNNRLQQ----SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 28.7 bits (64), Expect = 0.91
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 291 VFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEE 338
+ +Y+ + + + Y L +E + GDD+E + ++ + +E
Sbjct: 91 ILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDE 138
Score = 26.0 bits (57), Expect = 7.9
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 296 PEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESE 335
PE+ E T +DDE D+ +D+E+ +
Sbjct: 109 PEHAKINETDT-------FGPGDDDEIQFDDIGDDDEDID 141
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 29.5 bits (65), Expect = 1.00
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 6/123 (4%)
Query: 280 DGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEG 339
D++ F DP + T L ED DD++ +DEED D++ ++ +
Sbjct: 41 AEEARLSDLITGFV-DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Query: 340 -----EKENKETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCH 394
+E + ++ + + + + + +L P Q L +
Sbjct: 100 IDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVN 159
Query: 395 IVH 397
+
Sbjct: 160 SMR 162
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 29.2 bits (64), Expect = 1.3
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 405 LFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVV 464
L +Q+ GL A ++N+ + + I T L N + D +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-------I 322
Query: 465 VKINGLTRLQFLYLSSNVVSNYDKLRN 491
++ LT+LQ L+ ++N VS+ L N
Sbjct: 323 SPVSSLTKLQRLFFANNKVSDVSSLAN 349
>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly
(Drosophila lebanonensis) [TaxId: 7225]}
Length = 254
Score = 27.7 bits (61), Expect = 3.6
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 192 SKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQ 248
+ L P I++I S + VY++SK + LA+
Sbjct: 115 TTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVV----SFTNSLAK 167
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh
{Thermus aquaticus [TaxId: 271]}
Length = 88
Score = 25.4 bits (56), Expect = 7.2
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 492 VAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMG 540
VA+ F ++ +A+G VL E+ + + + +++ L E +G
Sbjct: 47 VARDFVERVREEALGKQVL--------ESLTPAEVILATVYEALKEALG 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.384
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,988,364
Number of extensions: 94419
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 36
Length of query: 551
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 461
Effective length of database: 1,171,896
Effective search space: 540244056
Effective search space used: 540244056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)