BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7792
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 72/81 (88%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+VATDVASKGLDF I+HVINYDMP+++ENYVHRIGRTG SG TG+ATTFINK+ DESVL
Sbjct: 108 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
+DLK LLLEA+Q++PP L L
Sbjct: 168 MDLKALLLEAKQKVPPVLQVL 188
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+VAT VA++GLD +KHVIN+D+P D+E YVHRIGRTGR G GLAT+F N+ N ++
Sbjct: 100 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI-NIT 158
Query: 61 LDLKHLLLEARQRIPPFLAELESE 84
DL LL+EA+Q +P +L + E
Sbjct: 159 KDLLDLLVEAKQEVPSWLENMAYE 182
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+VAT VA++GLD +KHVIN+D+P D+E YVHRIGRTGR G GLAT+F N+ N ++
Sbjct: 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI-NIT 388
Query: 61 LDLKHLLLEARQRIPPFLAELESE 84
DL LL+EA+Q +P +L + E
Sbjct: 389 KDLLDLLVEAKQEVPSWLENMAYE 412
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 55/78 (70%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
++AT VAS+GLD + IKHVINYDMP +++YVHRIGRTGR G G AT+F + D ++
Sbjct: 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413
Query: 61 LDLKHLLLEARQRIPPFL 78
DL +L + Q +P FL
Sbjct: 414 ADLVKILEGSGQTVPDFL 431
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TDV ++GLD ++ +INYD+P++ E Y+HRIGR+GR G+ G+A F+ K++D VL
Sbjct: 294 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFV-KNDDIRVL 352
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ +P +A+L
Sbjct: 353 RDIEQYYSTQIDEMPMNVADL 373
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TDV ++GLD ++ +INYD+P++ E Y+HRIGR+GR G+ G+A F+ K++D VL
Sbjct: 294 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFV-KNDDIRVL 352
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ +P +A+L
Sbjct: 353 RDIEQYYSTQIDEMPMNVADL 373
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TDV ++GLD ++ +INYD+P++ E Y+HRIGR+GR G+ G+A F+ K++D +L
Sbjct: 330 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV-KNDDIRIL 388
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ +P +A+L
Sbjct: 389 RDIEQYYSTQIDEMPMNVADL 409
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TDV ++GLD ++ +INYD+P++ E Y+HRIGR+GR G+ G+A F+ K++D +L
Sbjct: 331 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV-KNDDIRIL 389
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ +P +A+L
Sbjct: 390 RDIEQYYSTQIDEMPMNVADL 410
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TDV ++GLD ++ +INYD+P++ E Y+HRIGR+GR G+ G+A F+ K++D +L
Sbjct: 331 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV-KNDDIRIL 389
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ +P +A+L
Sbjct: 390 RDIEQYYSTQIDEMPMNVADL 410
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+VAT++ +G+D E + NYDMP+D + Y+HR+ R GR G GLA TF++ ND +L
Sbjct: 304 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 363
Query: 61 LDLK 64
D++
Sbjct: 364 NDVQ 367
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TDV ++GLD ++ +INYD+P++ E Y+HRIGR+GR G+ G+A F+ K++D +L
Sbjct: 309 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV-KNDDIRIL 367
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ +P +A+L
Sbjct: 368 RDIEQYYSTQIDEMPMNVADL 388
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+VAT++ +G+D E + NYDMP+D + Y+HR+ R GR G GLA TF++ ND +L
Sbjct: 303 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 362
Query: 61 LDLK 64
D++
Sbjct: 363 NDVQ 366
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+VAT++ +G+D E + NYDMP+D + Y+HR+ R GR G GLA TF++ ND +L
Sbjct: 304 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 363
Query: 61 LDLK 64
D++
Sbjct: 364 NDVQ 367
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+VAT++ +G+D E + NYDMP+D + Y+HR+ R GR G GLA TF++ ND +L
Sbjct: 85 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 144
Query: 61 LDLK 64
D++
Sbjct: 145 NDVQ 148
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFI 51
++ TDVAS+GLD ++ VIN+D P D+ Y+HRIGRTGR G+ G A TFI
Sbjct: 270 LITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFI 51
+VATDVA++G+D E I VINYD+P + E+YVHR GRTGR+G G A +F+
Sbjct: 89 LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINK 53
++ATDV S+G+D ++ VINY +P + E+Y HRIGRTGR+GK G A + IN+
Sbjct: 292 LIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINR 344
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFI 51
+VATDVA++G+D ++ HV N+DMP + Y+HRIGRT R+G+ G A + +
Sbjct: 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESV- 59
+V TDV ++G+DF + V+ +P ++ NY+HRIGRT RSGK G + FI K V
Sbjct: 90 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 149
Query: 60 -LLDLKHLLLEARQRIPPFLAELESET 85
L D K++++ +++ P E++SE
Sbjct: 150 ELEDAKNIVIAKQEKYEP-SEEIKSEV 175
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESV- 59
+V TDV ++G+DF + V+ +P ++ NY+HRIGRT RSGK G + FI K V
Sbjct: 90 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 149
Query: 60 -LLDLKHLLLEARQRIPPFLAELESET 85
L D K++++ +++ P E++SE
Sbjct: 150 ELEDAKNIVIAKQEKYEP-SEEIKSEV 175
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESV- 59
+V TDV ++G+DF + V+ +P ++ NY+HRIGRT RSGK G + FI K V
Sbjct: 90 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 149
Query: 60 -LLDLKHLLLEARQRIPPFLAELESET 85
L D K++++ +++ P E++SE
Sbjct: 150 ELEDAKNIVIAKQEKYEP-SEEIKSEV 175
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFINKS 54
+V T+V ++G+D E++ VIN+D+P D E Y+HRIGRTGR GK GLA ++
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 55 NDESVL 60
+ ++L
Sbjct: 447 HSMNIL 452
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFINKS 54
+V T+V ++G+D E++ VIN+D+P D E Y+HRIGRTGR GK GLA ++
Sbjct: 336 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 395
Query: 55 NDESVL 60
+ ++L
Sbjct: 396 HSMNIL 401
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFINKS 54
+V T+V ++G+D E++ VIN+D+P D E Y+HRIGRTGR GK GLA ++
Sbjct: 320 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379
Query: 55 NDESVL 60
+ ++L
Sbjct: 380 HSMNIL 385
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFINKS 54
+V T+V ++G+D E++ VIN+D+P D E Y+HRIGRTGR GK GLA ++
Sbjct: 357 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 416
Query: 55 NDESVL 60
+ ++L
Sbjct: 417 HSMNIL 422
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESV- 59
+V TDV ++G+DF + V+ +P ++ NY+HRIGRT RSGK G + FI K V
Sbjct: 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 404
Query: 60 -LLDLKHLLLEARQRIPPFLAELESET 85
L D K++++ +++ P E++SE
Sbjct: 405 ELEDAKNIVIAKQEKYEP-SEEIKSEV 430
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESV- 59
+V TDV ++G+DF + V+ +P ++ NY+HRIGRT RSGK G + FI K V
Sbjct: 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 404
Query: 60 -LLDLKHLLLEARQRIPPFLAELESET 85
L D K++++ +++ P E++SE
Sbjct: 405 ELEDAKNIVIAKQEKYEP-SEEIKSEV 430
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESV- 59
+V TDV ++G+DF + V+ +P ++ NY+HRIGRT RSGK G + FI K V
Sbjct: 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 455
Query: 60 -LLDLKHLLLEARQRIPPFLAELESET 85
L D K++++ +++ P E++SE
Sbjct: 456 ELEDAKNIVIAKQEKYEP-SEEIKSEV 481
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKS 54
++ T+V ++G+D + V+NYD+P D Y+HRIGRTGR G+ G+A +F++
Sbjct: 297 LITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356
Query: 55 NDESVL 60
N ++L
Sbjct: 357 NSFNIL 362
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKS 54
++ T+V ++G+D + V+NYD+P D Y+HRIGRTGR G+ G+A +F++
Sbjct: 297 LITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356
Query: 55 NDESVL 60
N ++L
Sbjct: 357 NSFNIL 362
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFIN 52
+V +D+ ++G+D + + VIN+D P E Y+HRIGR+GR G GLA IN
Sbjct: 312 LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 363
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFINKS 54
+V T+V ++G+D ++ V+NYDMP D + Y+HRIGRTGR G+ G++ F++
Sbjct: 411 LVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470
Query: 55 NDESVLLDLKHLLLEARQRIP 75
+ ++ R+P
Sbjct: 471 KSWEEMNAIQEYFQRPITRVP 491
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKS 54
++ T+V ++G+D + V+NYD+P D Y+HRIGRTGR G+ G+A +F++
Sbjct: 89 LITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 148
Query: 55 NDESVL 60
N ++L
Sbjct: 149 NSFNIL 154
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKS 54
++ T+V ++G+D + V+NYD+P D Y+HRIGRTGR G+ G+A +F++
Sbjct: 91 LITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 150
Query: 55 NDESVL 60
N ++L
Sbjct: 151 NSFNIL 156
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKS 54
++ T+V ++G+D + V+NYD+P D Y+HRIGRTGR G+ G+A +F++
Sbjct: 90 LITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 149
Query: 55 NDESVL 60
N ++L
Sbjct: 150 NSFNIL 155
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFI 51
+V TD+ ++G+D + + VIN+D P E Y+HRIGR+GR G GLA I
Sbjct: 98 LVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI 148
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 6/57 (10%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFI 51
++ T+V ++G+D +++ V+N+D+P D E Y+HRIGRTGR GK GLA I
Sbjct: 88 LITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 144
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TD+ ++G+D +++ VINYD+P + ENY+HRIGR GR G+ G+A F+ + D +
Sbjct: 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAM 142
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
+L+ + +P +A L
Sbjct: 143 RELEKFYSTQIEELPSDIATL 163
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
++ TD+ ++G+D +++ VINYD+P + ENY+HRIGR GR G+ G+A + + D+ L
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTL 392
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ + + +P +A+L
Sbjct: 393 RDIETFYNTSIEEMPLNVADL 413
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
++ TD+ ++G+D +++ VINYD+P + ENY+HRIGR GR G+ G+A + + D+ L
Sbjct: 308 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTL 366
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
D++ + + +P +A+L
Sbjct: 367 RDIETFYNTSIEEMPLNVADL 387
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVL 60
+++TD+ ++G+D +++ VINYD+P + ENY+HRIGR GR G+ G+A F+ + D +
Sbjct: 314 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAM 372
Query: 61 LDLKHLLLEARQRIPPFLAEL 81
+L+ + +P +A L
Sbjct: 373 RELEKFYSTQIEELPSDIATL 393
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 41/55 (74%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55
+++TD+ ++G+D +++ VINYD+P + ENY+HRIGR GR G+ G+A F+ +
Sbjct: 313 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 367
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVH 33
+VATDVA++GLD ++ V++Y MPD E Y H
Sbjct: 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVH 33
+VATDVA++GLD ++ V++Y +PD E Y H
Sbjct: 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55
+VAT G++ ++ V+++D+P ++E+Y GR GR G A F + ++
Sbjct: 290 VVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPAD 344
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55
+VAT G++ ++ V+++D+P ++E+Y GR GR G A F + ++
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGR 40
+VAT G+D +++ VI++ M +ENY GR GR
Sbjct: 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR 360
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKT---GLATTFINKSNDE 57
++ +++ S+G +F+ H + +D+P + + RIGR R G+ + ++ K+ +
Sbjct: 560 LLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA-Q 618
Query: 58 SVLLDLKHLLLEARQRIPP 76
SVL+ H L+A + P
Sbjct: 619 SVLVRWYHEGLDAFEHTCP 637
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDES 58
+VAT V +GLD E+ V+ Y+ + R GRTGR + + DE+
Sbjct: 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEA 480
>pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|1 Chain 1, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|1 Chain 1, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|B Chain B, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 438
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 22/80 (27%)
Query: 13 FEEIKHVINYDMPDDVENYVHRIGRTGRSG---KTGLATTFINKSN-------------- 55
+E K V+ PD+V V R G GR G TGL +F+ K +
Sbjct: 38 YETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESE 97
Query: 56 -----DESVLLDLKHLLLEA 70
D +L D+ HLL+E
Sbjct: 98 PGSFKDRYILEDVPHLLIEG 117
>pdb|1L65|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ A +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELAKAIGR 52
>pdb|1L67|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++A +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSEADKAIGR 52
>pdb|1QTB|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L AV+++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAVKSELDKAIGR 52
>pdb|240L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTAGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|249L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTAGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|114L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +T+ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKTELDKAIGR 52
>pdb|221L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ SIGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKSIGR 52
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 80 ELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSNQADY 138
++ ++ E L DE G +Y +G PKL+ VQ K A +G+ + L++ Q D+
Sbjct: 438 DMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLD-VQVKTA--MGKEETLSTAQLDF 493
>pdb|4EXM|A Chain A, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|B Chain B, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|C Chain C, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|D Chain D, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
Length = 347
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 208 YTIGIGHLLTKSPSLNAAKSELDKAIGR 235
>pdb|4ARJ|A Chain A, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
pdb|4ARJ|B Chain B, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
Length = 339
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 192 YTIGIGHLLTKSPSLNAAKSELDKAIGR 219
>pdb|1D2W|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTMGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L41|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LYI|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L62|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2QB0|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker.
pdb|2QB0|D Chain D, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker
Length = 241
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L+H+L +Q P L + L + D G Y G+GH +T P L A +++
Sbjct: 71 LQHIL---KQAGPNIFEMLRIDEGLRLKIYKDTEGY-YTIGIGHLLTKSPSLNAAKSELD 126
Query: 123 SSIGR 127
+IGR
Sbjct: 127 KAIGR 131
>pdb|1L61|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPNLNAAKSELDKAIGR 52
>pdb|1SSW|A Chain A, Crystal Structure Of Phage T4 Lysozyme Mutant
Y24aY25AT26AI27AC54TC97A
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 89 LDLGGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGR 127
L + D G A G+GH +T P L A +++ +IGR
Sbjct: 15 LKIYKDTEGAA-AAGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|195L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L59|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LYG|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|146L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|248L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G GH +T P L A +++ +IGR
Sbjct: 25 YTAGAGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1PQI|A Chain A, T4 Lysozyme Core Repacking Mutant I118lCORE7TA
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LWG|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|123L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|119L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|125L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|118L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|224L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|122L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1PQK|A Chain A, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|B Chain B, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|C Chain C, Repacking Of The Core Of T4 Lysozyme By Automated Design
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|128L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|126L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G0L|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152v
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LYE|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|210L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 163
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1TLA|A Chain A, Hydrophobic Core Repacking And Aromatic-Aromatic
Interaction In The Thermostable Mutant Of T4 Lysozyme
Ser 117 (Right Arrow) Phe
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QTH|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
pdb|1QTH|B Chain B, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|196L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|127L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1PQM|A Chain A, T4 Lysozyme Core Repacking Mutant V149iT152VTA
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G0M|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152i
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|259L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|257L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|258L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|260L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1D3M|A Chain A, Methionine Core Mutation
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G1W|A Chain A, T4 Lysozyme Mutant C54tC97AQ105M
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LLH|A Chain A, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|145L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|129L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P2L|A Chain A, T4 Lysozyme Core Repacking Mutant V87iTA
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P7S|A Chain A, T4 Lysozyme Core Repacking Mutant V103iTA
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L80|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|233L|A Chain A, T4 Lysozyme Mutant M120l
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G06|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149s
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L77|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2L78|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|230L|A Chain A, T4 Lysozyme Mutant M6l
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QT7|A Chain A, E11n Mutant Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|144L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|130L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L79|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QTC|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|234L|A Chain A, T4 Lysozyme Mutant M106l
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G0Q|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149i
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LYF|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G0J|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152s
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L81|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QTD|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L39|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
pdb|1L40|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1C6P|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM ARGON
pdb|1C6Q|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6T|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM XENON
pdb|1LW9|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
pdb|2OE4|X Chain X, High Pressure Psuedo Wild Type T4 Lysozyme
pdb|2OE7|X Chain X, High-Pressure T4 Lysozyme
pdb|2OE9|X Chain X, High-Pressure Structure Of Pseudo-Wt T4 Lysozyme
pdb|2OEA|X Chain X, High-Pressure Structure Of Pseudo-Wt T4 Lysozyme
pdb|1L63|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
pdb|219L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CV6|A Chain A, T4 Lysozyme Mutant V149m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CV1|A Chain A, T4 Lysozyme Mutant V111m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CX7|A Chain A, T4 Lysozyme Methionine Core Mutant
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CUQ|A Chain A, T4 Lysozyme Mutant V103m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L82|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|198L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CU3|A Chain A, T4 Lysozyme Mutant V87m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QS9|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P2R|A Chain A, T4 Lysozyme Core Repacking Mutant I78vTA
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P64|A Chain A, T4 Lysozyme Core Repacking Mutant L133fTA
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P36|A Chain A, T4 Lyoszyme Core Repacking Mutant I100vTA
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1D3J|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LYH|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CV5|A Chain A, T4 Lysozyme Mutant L133m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CU0|A Chain A, T4 Lysozyme Mutant I78m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L93|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L91|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L87|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G0G|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152a
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CV4|A Chain A, T4 Lysozyme Mutant L118m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CU5|A Chain A, T4 Lysozyme Mutant L91m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1D3F|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LYJ|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|141L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1JQU|A Chain A, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|B Chain B, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|C Chain C, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|D Chain D, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|166L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3JR6|A Chain A, Sequential Reorganization Of Beta-Sheet Topology By
Insertion Of A Single Strand
pdb|3JR6|B Chain B, Sequential Reorganization Of Beta-Sheet Topology By
Insertion Of A Single Strand
pdb|3JR6|C Chain C, Sequential Reorganization Of Beta-Sheet Topology By
Insertion Of A Single Strand
pdb|3JR6|D Chain D, Sequential Reorganization Of Beta-Sheet Topology By
Insertion Of A Single Strand
Length = 170
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 97 GCAYCGGLGHRITACPKLEAVQTKAASSIGR 127
G + G+GH +T P L A +++ +IGR
Sbjct: 28 GIGHLLGIGHLLTKSPSLNAAKSELDKAIGR 58
>pdb|1CV3|A Chain A, T4 Lysozyme Mutant L121m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CUP|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|199L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CU2|A Chain A, T4 Lysozyme Mutant L84m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|165L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P46|A Chain A, T4 Lysozyme Core Repacking Mutant M106iTA
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|237L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|255L|A Chain A, Hydrolase
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G1V|A Chain A, T4 Lysozyme Mutant C54tC97AI58T
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|164L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|232L|A Chain A, T4 Lysozyme Mutant M120k
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|235L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|231L|A Chain A, T4 Lysozyme Mutant M106k
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|175L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|175L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P56|A Chain A, Duplication-Extension Of Helix A Of T4 Lysozyme
Length = 176
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QS5|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|236L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|238L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L55|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|131L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YSIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|229L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L54|A Chain A, The Structural And Thermodynamic Consequences Of Burying A
Charged Residue Within The Hydrophobic Core Of T4
Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P6Y|A Chain A, T4 Lysozyme Core Repacking Mutant M120y/ta
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P37|A Chain A, T4 Lysozyme Core Repacking Back-Revertant L102mCORE10
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L86|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|243L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L94|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|170L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSN 134
Y G+GH +T P L A +++ +IGR NSN
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR----NSN 55
>pdb|155L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CTW|A Chain A, T4 Lysozyme Mutant I78a
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2LC9|A Chain A, Solution Structure Of A Minor And Transiently Formed State
Of A T4 Lysozyme Mutant
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|239L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|244L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QT6|A Chain A, E11h Mutant Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1PQO|A Chain A, T4 Lysozyme Core Repacking Mutant L118iTA
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L0K|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|140L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1C63|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C64|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C65|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Xenon
pdb|200L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|158L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|162L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|218L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CU6|A Chain A, T4 Lysozyme Mutant L91a
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|247L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CVK|A Chain A, T4 Lysozyme Mutant L118a
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1CV0|A Chain A, T4 Lysozyme Mutant F104m
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|214L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1C6C|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 16 ATM
Argon
pdb|1C6D|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 16 ATM
Krypton
pdb|1C6E|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 2 ATM
Xenon
pdb|1C6F|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 32 ATM
Argon
pdb|1C6G|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 4 ATM
Krypton
pdb|1C6H|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 4 ATM
Xenon
pdb|1C6I|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C6J|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6K|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Xenon
pdb|181L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|182L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|183L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|184L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|185L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|186L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|187L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|188L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|1L83|A Chain A, A Cavity-Containing Mutant Of T4 Lysozyme Is Stabilized By
Buried Benzene
pdb|1L90|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
pdb|1NHB|A Chain A, Specificity Of Ligand Binding In A Buried Non-polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|3DMV|A Chain A, Free Of Ligand Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DMZ|A Chain A, Hexafluorobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN0|A Chain A, Pentafluorobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN1|A Chain A, Chloropentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN2|A Chain A, Bromopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN3|A Chain A, Iodopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN4|A Chain A, Iodobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN6|A Chain A, 1,3,5-Trifluoro-2,4,6-Trichlorobenzene Binding In The
Hydrophobic Cavity Of T4 Lysozyme L99a Mutant
pdb|3DMX|A Chain A, Benzene Binding In The Hydrophobic Cavity Of T4 Lysozyme
L99a Mutant
pdb|3HH3|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - 1,2-Dihydro-1,2-Azaborine
pdb|3HH4|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - Benzene As Control
pdb|3HH5|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - 1-Ethyl-2-Hydro-1,2-Azaborine
pdb|3HH6|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity -Ethylbenzene As Control
pdb|2LCB|A Chain A, Solution Structure Of A Minor And Transiently Formed State
Of A T4 Lysozyme Mutant
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L95|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|213L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|245L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|197L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|215L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|160L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|220L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|222L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L92|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QSQ|A Chain A, Cavity Creating Mutation
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|211L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L88|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|163L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P3N|A Chain A, Core Redesign Back-Revertant I103vCORE10
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1PQJ|A Chain A, T4 Lysozyme Core Repacking Mutant A111vCORE10TA
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3RUN|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
Length = 168
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QT5|A Chain A, D20e Mutant Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1EPY|A Chain A, T4 Lysozyme Mutant, T21hC54TC97AQ141HT142H
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1KS3|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G0P|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149g
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|147L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|254L|A Chain A, Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|156L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|143L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L76|A Chain A, Tolerance Of T4 Lysozyme To Proline Substitutions Within
The Long Interdomain Alpha-Helix Illustrates The
Adaptability Of Proteins To Potentially Destabilizing
Lesions
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1PQD|A Chain A, T4 Lysozyme Core Repacking Mutant Core10TA
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1KW5|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1KY0|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L0J|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|159L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1KW7|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1KY1|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|157L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|246L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QUG|A Chain A, E108v Mutant Of T4 Lysozyme
Length = 162
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|227L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|228L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1JTM|A Chain A, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Has Weak
Intrinsic Folding Propensity
pdb|1JTN|A Chain A, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Region Has
Weak Intrinsic Folding Propensity
pdb|1JTN|B Chain B, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Region Has
Weak Intrinsic Folding Propensity
Length = 178
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1C60|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C61|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C62|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Xenon
pdb|1L85|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|161L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1I6S|A Chain A, T4 Lysozyme Mutant C54tC97AN101A
Length = 164
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|142L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1C66|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Argon
pdb|1C67|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Krypton
pdb|1C68|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Xenon
pdb|251L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|209L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 167
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1P5C|A Chain A, Circular Permutation Of Helix A In T4 Lysozyme
pdb|1P5C|B Chain B, Circular Permutation Of Helix A In T4 Lysozyme
pdb|1P5C|C Chain C, Circular Permutation Of Helix A In T4 Lysozyme
pdb|1P5C|D Chain D, Circular Permutation Of Helix A In T4 Lysozyme
Length = 167
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 14 YTIGIGHLLTKSPSLNAAKSELDKAIGR 41
>pdb|212L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 168
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|253L|A Chain A, Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2B6T|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6W|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6X|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6Y|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B6Z|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B70|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B72|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B73|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B74|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B75|A Chain A, T4 Lysozyme Mutant L99a At 150 Mpa
pdb|2OTY|X Chain X, 1,2-Dichlorobenzene In Complex With T4 Lysozyme L99a
pdb|2OTZ|X Chain X, N-Methylaniline In Complex With T4 Lysozyme L99a
pdb|2OU0|X Chain X, 1-Methylpyrrole In Complex With T4 Lysozyme L99a
pdb|2RAY|X Chain X, Beta-chlorophenetole In Complex With T4 Lysozyme L99a
pdb|2RAZ|X Chain X, 4-(Methylthio)nitrobenzene In Complex With T4 Lysozyme
L99a
pdb|2RB0|X Chain X, 2,6-Difluorobenzylbromide Complex With T4 Lysozyme L99a
pdb|2RB2|X Chain X, 3-Methylbenzylazide In Complex With T4 Lysozyme L99a
pdb|2RB1|X Chain X, 2-Ethoxyphenol In Complex With T4 Lysozyme L99a
Length = 162
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1C6L|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Argon
pdb|1C6M|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Krypton
pdb|1C6N|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Xenon
pdb|1L84|A Chain A, A Cavity-Containing Mutant Of T4 Lysozyme Is Stabilized By
Buried Benzene
pdb|1L89|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|252L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3DKE|X Chain X, Polar And Non-Polar Cavities In Phage T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QUO|A Chain A, L99aE108V MUTANT OF T4 LYSOZYME
Length = 162
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QUD|A Chain A, L99g Mutant Of T4 Lysozyme
Length = 162
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3DN8|A Chain A, Iodopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant (Seleno Version)
pdb|3DNA|A Chain A, Iodobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant (Seleno Version)
Length = 164
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QUH|A Chain A, L99gE108V MUTANT OF T4 LYSOZYME
Length = 162
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|4EPI|A Chain A, The Crystal Structure Of Pesticin-T4 Lysozyme Hybrid
Stabilized By Engineered Disulfide Bonds
Length = 330
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 191 YTIGIGHLLTKSPSLNAAKSELDKAIGR 218
>pdb|4GBR|B Chain B, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 163
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3SB9|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme R76hR80H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB9|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme R76hR80H BY SYNTHETIC
SYMMETRIZATION
pdb|3SBA|A Chain A, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|B Chain B, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|C Chain C, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|D Chain D, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|E Chain E, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|F Chain F, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
Length = 165
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 28 YTIGIGHLLTKSPSLNAAKSELDKAIGR 55
>pdb|138L|A Chain A, Rapid Crystallization Of T4 Lysozyme By Intermolecular
Disulfide Crosslinking
Length = 164
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1ZYT|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (A82r1)
Length = 164
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2O4W|A Chain A, T4 Lysozyme Circular Permutant
Length = 171
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 14 YTIGIGHLLTKSPSLNAAKSELDKAIGR 41
>pdb|1LPY|A Chain A, Multiple Methionine Substitutions In T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3G3W|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (T151r1) At
291 K
pdb|3G3X|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (T151r1) At
100 K
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2IGC|A Chain A, Structure Of Spin Labeled T4 Lysozyme Mutant T115r1a
pdb|2NTG|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r7
pdb|2OU8|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r1 At
Room Temperature
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2O79|A Chain A, T4 Lysozyme With C-Terminal Extension
Length = 170
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G0K|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152c
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1D3N|A Chain A, Methionine Core Mutation
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3SB8|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB8|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB8|C Chain C, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
Length = 165
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 28 YTIGIGHLLTKSPSLNAAKSELDKAIGR 55
>pdb|2HUK|A Chain A, Crystal Structure Of T4 Lysozyme V131c Synthetic Dimer
pdb|3G3V|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1) At
291 K
pdb|1ZUR|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1f)
pdb|1ZWN|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1b)
pdb|2A4T|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r7)
pdb|2CUU|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (v131r1)
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1G07|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149c
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2NTH|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant L118r1
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LWK|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QSB|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QTZ|A Chain A, D20c Mutant Of T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3SB6|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB6|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB7|A Chain A, Cu-Mediated Trimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB7|B Chain B, Cu-Mediated Trimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
Length = 165
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 28 YTIGIGHLLTKSPSLNAAKSELDKAIGR 55
>pdb|2OU9|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r1R119A
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2HUM|A Chain A, Crystal Structure Of T4 Lysozyme D72c Synthetic Dimer
pdb|2HUM|B Chain B, Crystal Structure Of T4 Lysozyme D72c Synthetic Dimer
Length = 164
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|115L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKVELDKAIGR 52
>pdb|1CX6|A Chain A, T4 Lysozyme Substituted With Selenomethionine
Length = 164
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|173L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L16|A Chain A, Structural Analysis Of The Temperature-Sensitive Mutant Of
Bacteriophage T4 Lysozyme, Glycine 156 (Right Arrow)
Aspartic Acid
Length = 164
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L27|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|111L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKNELDKAIGR 52
>pdb|1L04|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
pdb|1L05|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C8Q|A Chain A, Contribution Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1D9W|A Chain A, Bacteriophage T4 Lysozyme Mutant
Length = 164
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1DYA|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3CDT|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L30|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L49|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L23|A Chain A, Enhanced Protein Thermostability From Site-Directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L12|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L51|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L60|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L07|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L44|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L48|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L06|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C8S|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L37|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|171L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A ++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSALDKAIGR 52
>pdb|1L47|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L68|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKAELDKAIGR 52
>pdb|1L38|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L45|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L98|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3FI5|A Chain A, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|B Chain B, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|C Chain C, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|D Chain D, Crystal Structure Of T4 Lysozyme Mutant R96w
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3CDO|A Chain A, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|B Chain B, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|C Chain C, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|D Chain D, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C80|A Chain A, T4 Lysozyme Mutant R96y At Room Temperature
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L46|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|206L|A Chain A, Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNASKSELDKAIGR 52
>pdb|1L42|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
pdb|1L43|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L11|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1DYD|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L10|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L20|A Chain A, Enhanced Protein Thermostability From Designed Mutations
That Interact With Alpha-helix Dipoles
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L14|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1DYG|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L52|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|168L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|C Chain C, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|D Chain D, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|E Chain E, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L57|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1DYC|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L24|A Chain A, Enhanced Protein Thermostability From Site-directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|149L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L15|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L74|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3CDV|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3CDQ|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C7W|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L36|A Chain A, Toward A Simplification Of The Protein Folding Problem: A
Stabilizing Polyalanine Alpha-Helix Engineered In T4
Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L09|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L18|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1DYF|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L34|A Chain A, High-Resolution Structure Of The Temperature-Sensitive
Mutant Of Phage Lysozyme, Arg 96 (Right Arrow) His
pdb|3F8V|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L56|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3CDR|A Chain A, R96q Mutant Of Wildtype Phage T4 Lysozyme At 298 K
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L32|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LYD|A Chain A, Crystal Structure Of T4-Lysozyme Generated From Synthetic
Coding Dna Expressed In Escherichia Coli
pdb|2LZM|A Chain A, Structure Of Bacteriophage T4 Lysozyme Refined At 1.7
Angstroms Resolution
pdb|3LZM|A Chain A, Structural Studies Of Mutants Of T4 Lysozyme That Alter
Hydrophobic Stabilization
pdb|4LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|5LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|6LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|7LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L97|A Chain A, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L97|B Chain B, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L96|A Chain A, Structure Of A Hinge-bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L25|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L17|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1KNI|A Chain A, Stabilizing Disulfide Bridge Mutant Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L01|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3L2X|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme Mutant
115-119rx
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C82|A Chain A, Bacteriophage Lysozyme T4 Lysozyme Mutant K85aR96H
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C7Y|A Chain A, Mutant R96a Of T4 Lysozyme In Wildtype Background At 298k
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L29|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L13|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L58|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L02|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L31|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L00|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L22|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1T6H|A Chain A, Crystal Structure T4 Lysozyme Incorporating An Unnatural
Amino Acid P-Iodo-L-Phenylalanine At Position 153
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L33|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1DYE|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1B6I|A Chain A, T4 Lysozyme Mutant With Cys 54 Replaced By Thr, Cys 97
Replaced By Ala, Thr 21 Replaced By Cys And Lys 124
Replaced By Cys (C54t,C97a,T21c,K124c)
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C81|A Chain A, Mutant K85a Of T4 Lysozyme In Wildtype Background At Room
Temperature
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C8R|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L28|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|169L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|C Chain C, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|D Chain D, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|E Chain E, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|150L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|B Chain B, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|C Chain C, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|D Chain D, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|256L|A Chain A, Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3HWL|A Chain A, Crystal Structure Of T4 Lysozyme With The Unnatural Amino
Acid P- Acetyl-L-Phenylalanine Incorporated At Position
131
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L35|A Chain A, Structure Of A Thermostable Disulfide-Bridge Mutant Of
Phage T4 Lysozyme Shows That An Engineered Crosslink In
A Flexible Region Does Not Increase The Rigidity Of The
Folded Protein
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|108L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKIELDKAIGR 52
>pdb|1L99|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3K2R|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme Mutant
K65v1R76V1
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1DYB|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1SWY|A Chain A, Use Of A Halide Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination
pdb|1SX2|A Chain A, Use Of A Halide Binding Site To Bypass The 1000-Atom Limit
To Structure Determination By Direct Methods
pdb|1SX7|A Chain A, Use Of An Ion-Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination By Direct Methods
pdb|1SWZ|A Chain A, Use Of An Ion-Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination By Direct Methods
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L08|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|139L|A Chain A, Rapid Crystallization Of T4 Lysozyme By Intermolecular
Disulfide Crosslinking
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 243 YTIGIGHLLTKSPSLNAAKSELDKAIGR 270
>pdb|1C69|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C6A|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6B|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Xenon
pdb|1L69|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L75|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 233 YTIGIGHLLTKSPSLNAAKSELDKAIGR 260
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 236 YTIGIGHLLTKSPSLNAAKSELDKAIGR 263
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 248 YTIGIGHLLTKSPSLNAAKSELDKAIGR 275
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 229 YTIGIGHLLTKSPSLNAAKSELDKAIGR 256
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 241 YTIGIGHLLTKSPSLNAAKSELDKAIGR 268
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 226 YTIGIGHLLTKSPSLNAAKSELDKAIGR 253
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 230 YTIGIGHLLTKSPSLNAAKSELDKAIGR 257
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 247 YTIGIGHLLTKSPSLNAAKSELDKAIGR 274
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 262 YTIGIGHLLTKSPSLNAAKSELDKAIGR 289
>pdb|1L73|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|223L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|225L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|226L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|177L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|178L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3FA0|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 162
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3F9L|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C83|A Chain A, Bacteriophage T4 Lysozyme Mutant D89a In Wildtype
Background At Room Temperature
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1LGU|A Chain A, T4 Lysozyme Mutant L99aM102Q
pdb|1LGW|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 2-Fluoroaniline
pdb|1LGX|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 3,5-Difluoroaniline
pdb|1LI2|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY PHENOL
pdb|1LI3|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 3-Chlorophenol
pdb|1LI6|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 5-Methylpyrrole
pdb|1OV5|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-
Allylphenol
pdb|1OV7|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-Allyl-6-
Methyl-Phenol
pdb|1OVH|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-Chloro-6-
Methyl-Aniline
pdb|1OVJ|A Chain A, T4 Lysozyme Cavity Mutant L99a/m102q Bound With
3-fluoro-2- Methyl_aniline
pdb|1OVK|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH N-Allyl-
Aniline
pdb|1OWY|A Chain A, T4 Lysozyme Cavity Mutant L99a/m102q Bound With 2-propyl-
Aniline
pdb|1OWZ|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 4-
Fluorophenethyl Alcohol
pdb|1XEP|A Chain A, Catechol In Complex With T4 Lysozyme L99aM102Q
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|216L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
pdb|216L|B Chain B, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKWELDKAIGR 52
>pdb|1L71|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L21|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3FAD|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3C7Z|A Chain A, T4 Lysozyme Mutant D89aR96H AT ROOM TEMPERATURE
Length = 164
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L70|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1QT4|A Chain A, T26q Mutant Of T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YQIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L72|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|109L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKKELDKAIGR 52
>pdb|2RBN|A Chain A, N-Phenylglycinonitrile In Complex With T4 Lysozyme
L99aM102Q
pdb|2RBO|A Chain A, 2-Nitrothiophene In Complex With T4 Lysozyme L99aM102Q
pdb|2RBP|A Chain A, 2-(N-Propylthio)ethanol In Complex With T4 Lysozyme
L99aM102Q
pdb|2RBQ|A Chain A, 3-Methylbenzylazide In Complex With T4 L99aM102Q
pdb|2RBR|A Chain A, 2-Phenoxyethanol In Complex With T4 Lysozyme L99aM102Q
pdb|2RBS|A Chain A, (r)(+)-3-chloro-1-phenyl-1-propanol In Complex With T4
Lysozyme L99a/m102q
Length = 162
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|190L|A Chain A, A Helix Initiation Signal In T4 Lysozyme Identified By
Polyalanine Mutagenesis
Length = 164
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|191L|A Chain A, A Helix Initiation Signal In T4 Lysozyme Identified By
Polyalanine Mutagenesis
Length = 164
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3SBB|C Chain C, Disulphide-Mediated Tetramer Of T4 Lysozyme R76cR80C BY
SYNTHETIC Symmetrization
Length = 165
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 28 YTIGIGHLLTKSPSLNAAKSELDKAIGR 55
>pdb|1L50|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|1L19|A Chain A, Enhanced Protein Thermostability From Designed Mutations
That Interact With Alpha-helix Dipoles
Length = 164
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPDLNAAKSELDKAIGR 52
>pdb|1L53|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3SB5|B Chain B, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|A Chain A, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|C Chain C, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|D Chain D, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
Length = 165
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 28 YTIGIGHLLTKSPSLNAAKSELDKAIGR 55
>pdb|3GUI|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY--Apo Structure
Length = 164
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPDLNAAKSELDKAIGR 52
>pdb|1L03|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|110L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKLELDKAIGR 52
>pdb|1L26|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-helix But Do Not Alter Protein Stability
Length = 164
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|172L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|112L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKPELDKAIGR 52
>pdb|1L66|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A ++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAASELDKAIGR 52
>pdb|3HT6|A Chain A, 2-Methylphenol In Complex With T4 Lysozyme L99aM102Q
pdb|3HT7|A Chain A, 2-Ethylphenol In Complex With T4 Lysozyme L99aM102Q
pdb|3HT8|A Chain A, 5-chloro-2-methylphenol In Complex With T4 Lysozyme
L99a/m102q
pdb|3HT9|A Chain A, 2-Methoxyphenol In Complex With T4 Lysozyme L99aM102Q
pdb|3HTB|A Chain A, 2-Propylphenol In Complex With T4 Lysozyme L99aM102Q
pdb|3HTD|A Chain A, (Z)-Thiophene-2-Carboxaldoxime In Complex With T4 Lysozyme
L99aM102Q
pdb|3HTF|A Chain A, 4-Chloro-1h-Pyrazole In Complex With T4 Lysozyme L99aM102Q
pdb|3HTG|A Chain A, 2-Ethoxy-3,4-Dihydro-2h-Pyran In Complex With T4 Lysozyme
L99aM102Q
pdb|3HU8|A Chain A, 2-Ethoxyphenol In Complex With T4 Lysozyme L99aM102Q
pdb|3HU9|A Chain A, Nitrosobenzene In Complex With T4 Lysozyme L99aM102Q
pdb|3HUA|A Chain A, 4,5,6,7-Tetrahydroindole In Complex With T4 Lysozyme
L99aM102Q
pdb|3HUK|A Chain A, Benzylacetate In Complex With T4 Lysozyme L99aM102Q
Length = 164
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPDLNAAKSELDKAIGR 52
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 265 YTIGIGHLLTKSPSLNAAKSELDKAIGR 292
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 262 YTIGIGHLLTKSPSLNAAKSELDKAIGR 289
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 265 YTIGIGHLLTKSPSLNAAKSELDKAIGR 292
>pdb|217L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
pdb|3L64|A Chain A, T4 Lysozyme S44eWT
Length = 164
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKEELDKAIGR 52
>pdb|1QT8|A Chain A, T26h Mutant Of T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YHIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|113L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKRELDKAIGR 52
>pdb|3HUQ|A Chain A, Thieno[3,2-B]thiophene In Complex With T4 Lysozyme
L99aM102Q
Length = 162
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPDLNAAKSELDKAIGR 52
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGR-TGRSGKTGLATT 49
++AT VA +G+D E VI Y+ +V + GR R K L T+
Sbjct: 456 LIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGRGRARDSKCFLLTS 505
>pdb|2QAR|C Chain C, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|F Chain F, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 163
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 26 YTIGIGHLLTKSPSLNAAKSELDKAIGR 53
>pdb|1QT3|A Chain A, T26d Mutant Of T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YDIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|120L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L + +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNSAKSELDKAIGR 52
>pdb|1T8G|A Chain A, Crystal Structure Of Phage T4 Lysozyme Mutant
L32aL33AT34AC54TC97AE108V
Length = 164
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH T P L A +++ +IGR
Sbjct: 25 YTIGIGHAATKSPSLNAAKSELDKAIGR 52
>pdb|137L|A Chain A, Structural Basis Of Amino Acid Alpha Helix Propensity
pdb|137L|B Chain B, Structural Basis Of Amino Acid Alpha Helix Propensity
Length = 164
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKFELDKAIGR 52
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 260 YTIGIGHLLTKSPSLNAAKSELDKAIGR 287
>pdb|1D2Y|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ ++GR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAMGR 52
>pdb|148L|E Chain E, A Covalent Enzyme-Substrate Intermediate With Saccharide
Distortion In A Mutant T4 Lysozyme
pdb|180L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|180L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|1QTV|A Chain A, T26e Apo Structure Of T4 Lysozyme
Length = 164
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YEIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 39 YTIGIGHLLTKSPSLNAAKSELDKAIGR 66
>pdb|3GUJ|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY-- Benzene Binding
pdb|3GUK|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY-- Toluene Binding
pdb|3GUK|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY-- Toluene Binding
pdb|3GUL|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY-- Ethylbenzene Binding
pdb|3GUL|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY-- Ethylbenzene Binding
pdb|3GUM|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY--P- Xylene Binding
pdb|3GUM|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY--P- Xylene Binding
pdb|3GUN|A Chain A, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY-- Aniline Binding
pdb|3GUN|B Chain B, T4 Lysozyme M102eL99A MUTANT WITH BURIED CHARGE IN APOLAR
CAVITY-- Aniline Binding
pdb|3GUO|A Chain A, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
Cavity-- Phenol Binding
pdb|3GUO|B Chain B, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
Cavity-- Phenol Binding
pdb|3GUP|A Chain A, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
Cavity-- Pyridine Binding
pdb|3GUP|B Chain B, T4 Lysozyme M102e/l99a Mutant With Buried Charge In Apolar
Cavity-- Pyridine Binding
Length = 164
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPDLNAAKSELDKAIGR 52
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 262 YTIGIGHLLTKSPSLNAAKSELDKAIGR 289
>pdb|167L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|167L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 261 YTIGIGHLLTKSPSLNAAKSELDKAIGR 288
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 273 YTIGIGHLLTKSPSLNAAKSELDKAIGR 300
>pdb|107L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKGELDKAIGR 52
>pdb|4E97|A Chain A, T4 Lysozyme L99aM102H WITH 2-Mercaptoethanol Bound
pdb|4E97|B Chain B, T4 Lysozyme L99aM102H WITH 2-Mercaptoethanol Bound
pdb|4EKP|A Chain A, T4 Lysozyme L99aM102H WITH NITROBENZENE BOUND
pdb|4EKP|B Chain B, T4 Lysozyme L99aM102H WITH NITROBENZENE BOUND
pdb|4EKQ|A Chain A, T4 Lysozyme L99aM102H WITH 4-Nitrophenol Bound
pdb|4EKQ|B Chain B, T4 Lysozyme L99aM102H WITH 4-Nitrophenol Bound
pdb|4EKR|A Chain A, T4 Lysozyme L99aM102H WITH 2-Cyanophenol Bound
pdb|4EKR|B Chain B, T4 Lysozyme L99aM102H WITH 2-Cyanophenol Bound
pdb|4EKS|A Chain A, T4 Lysozyme L99aM102H WITH ISOXAZOLE BOUND
pdb|4EKS|B Chain B, T4 Lysozyme L99aM102H WITH ISOXAZOLE BOUND
Length = 187
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 48 YTIGIGHLLTKSPDLNAAKSELDKAIGR 75
>pdb|2HUL|A Chain A, Crystal Structure Of T4 Lysozyme S44c Synthetic Dimer
Length = 164
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKCELDKAIGR 52
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRS 41
++AT VA +GLD +E VI Y + V N + + GR+
Sbjct: 468 LIATTVAEEGLDIKECNIVIRYGL---VTNEIAMVQARGRA 505
>pdb|241L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G GH +T P L A +++ +IGR
Sbjct: 25 YTIGAGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2Q9E|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant S44r1
pdb|2Q9E|B Chain B, Structure Of Spin-Labeled T4 Lysozyme Mutant S44r1
pdb|2Q9E|C Chain C, Structure Of Spin-Labeled T4 Lysozyme Mutant S44r1
Length = 164
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A + + +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKCELDKAIGR 52
>pdb|250L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G GH +T P L A +++ +IGR
Sbjct: 25 YTIGAGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|2E1X|A Chain A, Nmr Structure Of The Hiv-2 Nucleocapsid Protein
pdb|2IWJ|A Chain A, Solution Structure Of The Zn Complex Of Hiv-2 Ncp(23-49)
Peptide, Encompassing Protein Cchc-Linker, Distal Cchc
Zn- Binding Motif And C-Terminal Tail
Length = 27
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 96 RGCAYCGGLGHRITACPKLEA 116
+GC CG GH + CP+ +A
Sbjct: 6 QGCWKCGKTGHVMAKCPERQA 26
>pdb|2A51|A Chain A, Structure Of The (13-51) Domain Of The Nucleocapsid
Protein Ncp8 From Sivlhoest
Length = 39
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 95 ERGCAYCGGLGHRITACPK 113
+ GC CG HR CPK
Sbjct: 21 QEGCWNCGSKEHRFAQCPK 39
>pdb|1T8F|A Chain A, Crystal Structure Of Phage T4 Lysozyme Mutant
R14aK16AI17AK19AT21AE22AC54TC97A
Length = 164
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 103 GLGHRITACPKLEAVQTKAASSIGR 127
G+GH +T P L A +++ +IGR
Sbjct: 28 GIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|152L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
Length = 164
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 25 YTIGIGHLLTKSPSLNAAKSELDKAIGR 52
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 100 YCGGLGHRITACPKLEAVQTKAASSIGR 127
Y G+GH +T P L A +++ +IGR
Sbjct: 254 YTIGIGHLLTKSPSLNAAKSELDKAIGR 281
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGR-TGRSGKTGLATT 49
++AT VA +G+D + VI Y+ +V + GR R K L T+
Sbjct: 456 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 505
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGR-TGRSGKTGLATT 49
++AT VA +G+D + VI Y+ +V + GR R K L T+
Sbjct: 464 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 513
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49
++AT VA +G+D + V+ Y+ +V + GR +G + T
Sbjct: 698 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGR-TGRSGKTGLATT 49
++AT VA +G+D + VI Y+ +V + GR R K L T+
Sbjct: 465 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 514
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 28 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 82
Query: 123 SSIGR 127
+ + R
Sbjct: 83 NEVER 87
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 28 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 82
Query: 123 SSIGR 127
+ + R
Sbjct: 83 NEVER 87
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 28 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 82
Query: 123 SSIGR 127
+ + R
Sbjct: 83 NEVER 87
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 27 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 81
Query: 123 SSIGR 127
+ + R
Sbjct: 82 NEVER 86
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 28 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 82
Query: 123 SSIGR 127
+ + R
Sbjct: 83 NEVER 87
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 28 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 82
Query: 123 SSIGR 127
+ + R
Sbjct: 83 NEVER 87
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 28 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 82
Query: 123 SSIGR 127
+ + R
Sbjct: 83 NEVER 87
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 28 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 82
Query: 123 SSIGR 127
+ + R
Sbjct: 83 NEVER 87
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 LKHLLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAA 122
L ++LEAR R+ L ++ K++DLGG +Y G +RI K ++T
Sbjct: 27 LNVVVLEARDRVGGRTYTLRNQKVKYVDLGG-----SYVGPTQNRILRLAKELGLETYKV 81
Query: 123 SSIGR 127
+ + R
Sbjct: 82 NEVER 86
>pdb|3QAO|A Chain A, The Crystal Structure Of The N-Terminal Domain Of A
Merr-Like Transcriptional Regulator From Listeria
Monocytogenes Egd-E
Length = 249
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 56 DESVLLDL-KHLLLEARQRIPPFLAELE 82
D++V LD +HLL+E +QRI LA L+
Sbjct: 76 DKNVALDXQRHLLIEKKQRIETXLATLD 103
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49
++AT VA +G+D + V+ Y+ +V + GR +G + T
Sbjct: 698 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49
++AT VA +G+D + V+ Y+ +V + GR +G + T
Sbjct: 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 505
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 66 LLLEARQRIPPFLAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLEAVQT 119
L+LEAR R+ + +E K++D+GG AY G +RI K ++T
Sbjct: 48 LVLEARDRVGGRTYTVRNEHVKWVDVGG-----AYVGPTQNRILRLSKELGIET 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,942,760
Number of Sequences: 62578
Number of extensions: 146887
Number of successful extensions: 840
Number of sequences better than 100.0: 466
Number of HSP's better than 100.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 476
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)