Query psy7792
Match_columns 138
No_of_seqs 176 out of 1648
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:57:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0341|consensus 100.0 9.3E-32 2E-36 215.0 6.8 133 1-134 475-609 (610)
2 KOG0331|consensus 99.9 4.9E-22 1.1E-26 164.8 8.1 84 1-85 395-478 (519)
3 COG0514 RecQ Superfamily II DN 99.9 5.9E-22 1.3E-26 166.6 7.9 60 1-61 284-343 (590)
4 KOG0328|consensus 99.8 1.3E-21 2.8E-26 151.7 6.1 79 1-80 320-398 (400)
5 KOG0336|consensus 99.8 1.2E-20 2.6E-25 152.3 9.9 87 1-88 519-605 (629)
6 KOG0335|consensus 99.8 7.2E-21 1.6E-25 156.1 7.1 80 1-81 391-470 (482)
7 PLN03137 ATP-dependent DNA hel 99.8 3.6E-21 7.9E-26 170.5 5.0 54 1-54 734-787 (1195)
8 PTZ00110 helicase; Provisional 99.8 1.9E-20 4.1E-25 157.8 9.0 84 1-85 431-514 (545)
9 KOG0333|consensus 99.8 6.6E-21 1.4E-25 157.0 5.9 80 1-81 571-651 (673)
10 PLN00206 DEAD-box ATP-dependen 99.8 5.7E-20 1.2E-24 154.0 7.6 81 1-82 422-502 (518)
11 PRK11057 ATP-dependent DNA hel 99.8 5.2E-20 1.1E-24 156.8 6.6 54 1-54 290-343 (607)
12 KOG0330|consensus 99.8 1.3E-19 2.7E-24 145.2 7.9 72 1-73 354-425 (476)
13 KOG0342|consensus 99.8 1.2E-19 2.7E-24 148.3 6.6 84 1-85 384-467 (543)
14 COG0513 SrmB Superfamily II DN 99.8 6.9E-20 1.5E-24 153.5 5.0 70 1-70 327-396 (513)
15 TIGR00614 recQ_fam ATP-depende 99.8 1.5E-19 3.2E-24 149.8 6.7 60 1-61 280-339 (470)
16 KOG0340|consensus 99.8 1.9E-19 4E-24 142.9 6.0 74 1-75 308-381 (442)
17 KOG0326|consensus 99.8 2E-19 4.3E-24 141.5 5.7 76 1-77 376-451 (459)
18 KOG0332|consensus 99.8 1.5E-18 3.3E-23 138.5 7.1 76 1-76 384-465 (477)
19 PRK04837 ATP-dependent RNA hel 99.8 4.2E-19 9E-24 145.1 3.6 69 1-70 309-377 (423)
20 TIGR01389 recQ ATP-dependent D 99.8 2.2E-18 4.8E-23 146.3 8.0 54 1-54 278-331 (591)
21 KOG0345|consensus 99.7 1.6E-18 3.4E-23 141.5 5.3 62 1-63 311-372 (567)
22 KOG0344|consensus 99.7 5.4E-18 1.2E-22 140.9 7.3 83 1-84 442-524 (593)
23 KOG0352|consensus 99.7 8.7E-18 1.9E-22 136.4 7.6 63 1-64 309-371 (641)
24 PRK10590 ATP-dependent RNA hel 99.7 8.4E-18 1.8E-22 138.9 5.5 69 1-70 299-367 (456)
25 KOG0348|consensus 99.7 2.1E-17 4.5E-22 136.8 6.6 66 1-67 501-566 (708)
26 PRK11192 ATP-dependent RNA hel 99.7 2.3E-17 5E-22 135.1 6.0 67 1-68 299-365 (434)
27 PRK11776 ATP-dependent RNA hel 99.7 2.5E-17 5.3E-22 136.0 5.9 67 1-68 296-362 (460)
28 PRK01297 ATP-dependent RNA hel 99.7 3.2E-17 6.8E-22 135.9 6.2 70 1-71 389-458 (475)
29 PRK11634 ATP-dependent RNA hel 99.7 3.4E-17 7.4E-22 140.1 6.3 67 1-68 299-365 (629)
30 KOG0338|consensus 99.7 4.6E-17 1E-21 134.2 6.8 65 1-66 480-544 (691)
31 KOG0351|consensus 99.7 4E-17 8.7E-22 143.8 6.6 55 1-55 539-593 (941)
32 KOG0350|consensus 99.7 3E-17 6.5E-22 134.9 4.9 68 1-68 487-554 (620)
33 PRK04537 ATP-dependent RNA hel 99.7 4E-17 8.6E-22 138.4 5.7 68 1-69 311-378 (572)
34 KOG0343|consensus 99.7 1.3E-16 2.9E-21 132.5 7.1 89 1-89 369-459 (758)
35 PTZ00424 helicase 45; Provisio 99.7 5.3E-17 1.2E-21 131.1 4.2 75 1-76 321-395 (401)
36 KOG0347|consensus 99.6 8E-17 1.7E-21 133.7 3.7 69 1-70 517-585 (731)
37 KOG0329|consensus 99.6 1.1E-16 2.4E-21 123.1 3.3 77 1-77 302-378 (387)
38 KOG0339|consensus 99.6 8E-16 1.7E-20 127.0 8.1 87 1-88 522-608 (731)
39 KOG0327|consensus 99.6 2E-16 4.4E-21 126.3 3.7 79 1-80 317-395 (397)
40 TIGR03817 DECH_helic helicase/ 99.6 7.2E-16 1.6E-20 134.1 5.2 69 1-69 333-402 (742)
41 KOG0334|consensus 99.6 5.6E-15 1.2E-19 129.2 9.2 91 1-92 667-757 (997)
42 KOG0353|consensus 99.6 1.1E-15 2.4E-20 123.1 3.0 78 1-79 371-491 (695)
43 KOG0346|consensus 99.5 1.4E-14 3E-19 117.9 5.4 63 6-69 362-424 (569)
44 KOG4284|consensus 99.5 1.9E-14 4.1E-19 121.7 6.2 63 1-63 326-388 (980)
45 PF00271 Helicase_C: Helicase 99.5 1.4E-14 3E-19 92.0 3.8 42 1-42 37-78 (78)
46 PRK12898 secA preprotein trans 99.5 5.3E-14 1.1E-18 120.4 6.5 54 1-54 525-586 (656)
47 PRK09200 preprotein translocas 99.4 3.4E-13 7.3E-18 117.5 9.4 55 1-55 480-542 (790)
48 PRK04914 ATP-dependent helicas 99.4 1.9E-13 4.1E-18 121.2 6.6 68 1-69 550-617 (956)
49 PRK13767 ATP-dependent helicas 99.3 2.4E-12 5.1E-17 114.0 6.9 54 1-54 344-398 (876)
50 TIGR00643 recG ATP-dependent D 99.3 1.1E-11 2.3E-16 106.5 10.5 52 1-52 512-564 (630)
51 PRK10917 ATP-dependent DNA hel 99.3 4.3E-12 9.2E-17 109.8 7.5 53 1-53 535-588 (681)
52 PHA02653 RNA helicase NPH-II; 99.3 2E-12 4.4E-17 111.5 4.2 54 1-55 450-515 (675)
53 TIGR03714 secA2 accessory Sec 99.3 2.5E-11 5.4E-16 105.4 9.4 54 1-55 476-538 (762)
54 COG1111 MPH1 ERCC4-like helica 99.2 1.6E-11 3.4E-16 101.5 7.0 53 1-54 429-481 (542)
55 TIGR00963 secA preprotein tran 99.2 3.6E-11 7.7E-16 104.1 9.2 55 1-55 457-518 (745)
56 PRK05298 excinuclease ABC subu 99.2 2E-11 4.3E-16 105.2 7.5 77 1-78 500-589 (652)
57 TIGR00580 mfd transcription-re 99.2 1.1E-11 2.5E-16 110.0 6.1 54 1-54 716-770 (926)
58 KOG0337|consensus 99.2 2.4E-12 5.3E-17 104.5 1.1 64 1-65 315-378 (529)
59 KOG0349|consensus 99.2 5E-12 1.1E-16 103.5 2.7 61 1-62 562-622 (725)
60 TIGR00631 uvrb excinuclease AB 99.2 3E-11 6.6E-16 104.1 7.0 61 1-63 496-561 (655)
61 PRK12906 secA preprotein trans 99.2 1.4E-11 3E-16 107.4 4.8 55 1-55 492-554 (796)
62 PRK13766 Hef nuclease; Provisi 99.2 3.5E-11 7.6E-16 105.0 7.3 53 1-54 427-479 (773)
63 TIGR01587 cas3_core CRISPR-ass 99.2 1E-11 2.2E-16 99.1 3.5 42 1-45 282-323 (358)
64 PRK09751 putative ATP-dependen 99.2 3.1E-11 6.8E-16 110.8 6.0 52 1-52 331-383 (1490)
65 smart00490 HELICc helicase sup 99.2 2.2E-11 4.8E-16 76.5 3.3 42 1-42 41-82 (82)
66 cd00079 HELICc Helicase superf 99.2 2.1E-11 4.5E-16 83.1 3.2 50 1-50 82-131 (131)
67 PRK10689 transcription-repair 99.1 2.7E-11 5.9E-16 109.6 3.0 53 1-53 865-918 (1147)
68 TIGR01970 DEAH_box_HrpB ATP-de 99.1 3.4E-11 7.5E-16 105.9 3.0 53 1-54 266-336 (819)
69 PRK12900 secA preprotein trans 99.0 5.5E-10 1.2E-14 98.8 8.0 55 1-55 650-712 (1025)
70 PRK11664 ATP-dependent RNA hel 99.0 1.2E-10 2.6E-15 102.4 3.3 53 1-54 269-339 (812)
71 PRK02362 ski2-like helicase; P 99.0 4.1E-10 8.9E-15 98.2 5.8 54 1-54 333-397 (737)
72 PRK11131 ATP-dependent RNA hel 99.0 2.4E-10 5.1E-15 103.8 3.7 53 1-54 341-411 (1294)
73 KOG0354|consensus 99.0 1.1E-09 2.4E-14 94.5 6.6 52 1-54 478-529 (746)
74 TIGR01967 DEAH_box_HrpA ATP-de 98.9 5.7E-10 1.2E-14 101.5 4.1 53 1-54 334-404 (1283)
75 TIGR00603 rad25 DNA repair hel 98.9 3E-09 6.5E-14 92.5 7.4 55 1-55 546-608 (732)
76 TIGR02621 cas3_GSU0051 CRISPR- 98.9 1.1E-09 2.4E-14 96.2 4.2 50 1-53 340-390 (844)
77 PHA02558 uvsW UvsW helicase; P 98.9 1.3E-09 2.9E-14 91.3 4.4 52 1-52 398-450 (501)
78 PRK00254 ski2-like helicase; P 98.8 6.6E-09 1.4E-13 90.5 6.6 54 1-54 325-388 (720)
79 COG1201 Lhr Lhr-like helicases 98.7 1.2E-08 2.5E-13 89.5 5.0 54 1-54 308-362 (814)
80 PRK01172 ski2-like helicase; P 98.7 2.1E-08 4.6E-13 86.7 5.5 53 1-54 315-378 (674)
81 PRK14701 reverse gyrase; Provi 98.5 2E-08 4.2E-13 93.7 1.1 52 1-52 382-454 (1638)
82 KOG4150|consensus 98.5 1.3E-07 2.7E-12 80.2 5.0 65 1-65 587-652 (1034)
83 PLN03142 Probable chromatin-re 98.4 4.2E-07 9E-12 81.9 6.6 47 1-47 544-590 (1033)
84 PRK05580 primosome assembly pr 98.4 3.8E-07 8.2E-12 79.3 5.6 51 1-51 484-546 (679)
85 TIGR00595 priA primosomal prot 98.3 1.1E-06 2.3E-11 74.2 6.2 54 1-54 316-382 (505)
86 PRK09401 reverse gyrase; Revie 98.3 1.1E-06 2.3E-11 80.4 5.9 39 1-39 380-429 (1176)
87 PRK09694 helicase Cas3; Provis 98.1 1.4E-05 3.1E-10 71.3 8.3 40 1-43 625-664 (878)
88 COG1205 Distinct helicase fami 98.0 2.3E-06 5E-11 76.1 2.2 54 1-54 368-422 (851)
89 PRK11448 hsdR type I restricti 97.9 1.4E-05 3.1E-10 72.9 4.8 41 1-41 760-800 (1123)
90 COG1061 SSL2 DNA or RNA helica 97.8 3.4E-05 7.4E-10 64.1 5.1 40 1-40 336-375 (442)
91 KOG0947|consensus 97.6 7.1E-05 1.5E-09 66.7 4.8 53 1-54 660-723 (1248)
92 TIGR01054 rgy reverse gyrase. 97.5 0.0001 2.2E-09 67.7 4.2 27 1-27 379-410 (1171)
93 COG1200 RecG RecG-like helicas 97.5 0.00022 4.7E-09 61.6 5.8 106 1-115 537-645 (677)
94 KOG0953|consensus 97.5 0.00017 3.7E-09 61.2 4.6 52 1-53 413-476 (700)
95 PRK12903 secA preprotein trans 97.4 0.0011 2.3E-08 59.1 9.3 54 2-55 479-540 (925)
96 KOG0948|consensus 97.4 9E-05 2E-09 64.8 2.6 58 1-58 476-543 (1041)
97 COG1197 Mfd Transcription-repa 97.4 0.0002 4.3E-09 65.0 4.7 54 1-54 859-913 (1139)
98 PRK12904 preprotein translocas 97.3 0.0012 2.6E-08 58.7 8.6 55 1-55 482-574 (830)
99 COG0556 UvrB Helicase subunit 97.2 0.00072 1.6E-08 57.4 5.2 53 1-54 500-557 (663)
100 KOG0390|consensus 96.9 0.00097 2.1E-08 58.8 4.0 50 1-50 652-701 (776)
101 KOG0950|consensus 96.9 0.0014 3.1E-08 58.5 5.0 60 1-61 552-617 (1008)
102 COG1204 Superfamily II helicas 96.9 0.0012 2.5E-08 58.5 4.2 54 1-54 344-408 (766)
103 PRK12899 secA preprotein trans 96.8 0.011 2.4E-07 53.3 9.7 54 2-55 621-682 (970)
104 PRK12326 preprotein translocas 96.8 0.0014 3.1E-08 57.4 4.0 54 2-55 480-548 (764)
105 KOG0926|consensus 96.7 0.00057 1.2E-08 60.4 1.2 53 1-54 634-704 (1172)
106 PRK13107 preprotein translocas 96.7 0.0041 8.9E-08 55.7 6.5 55 1-55 501-592 (908)
107 PRK13104 secA preprotein trans 96.7 0.0044 9.6E-08 55.5 6.7 55 1-55 496-588 (896)
108 COG4581 Superfamily II RNA hel 96.4 0.0035 7.6E-08 56.9 3.7 54 1-55 474-538 (1041)
109 COG1202 Superfamily II helicas 96.4 0.0015 3.3E-08 56.1 1.3 54 1-54 494-553 (830)
110 COG1203 CRISPR-associated heli 96.3 0.0046 1E-07 54.5 4.2 50 1-53 498-549 (733)
111 PRK12901 secA preprotein trans 96.3 0.007 1.5E-07 55.0 5.3 54 2-55 681-742 (1112)
112 PRK13103 secA preprotein trans 96.2 0.024 5.3E-07 50.9 8.2 54 2-55 502-592 (913)
113 COG4098 comFA Superfamily II D 96.2 0.018 3.9E-07 46.8 6.7 54 1-54 359-415 (441)
114 KOG0387|consensus 96.1 0.0045 9.7E-08 54.6 2.9 50 1-50 603-652 (923)
115 KOG0923|consensus 96.0 0.0046 1E-07 53.8 2.7 51 1-52 536-604 (902)
116 COG1643 HrpA HrpA-like helicas 96.0 0.0041 9E-08 55.5 2.5 53 1-54 317-387 (845)
117 KOG0924|consensus 95.8 0.0045 9.9E-08 54.1 1.7 52 1-53 627-696 (1042)
118 KOG0385|consensus 95.6 0.03 6.5E-07 49.6 6.0 50 1-50 544-593 (971)
119 KOG0922|consensus 95.6 0.0091 2E-07 51.7 2.5 53 1-54 320-390 (674)
120 KOG0384|consensus 95.4 0.017 3.6E-07 53.2 3.8 49 1-49 756-804 (1373)
121 KOG0920|consensus 95.3 0.012 2.5E-07 53.0 2.5 53 1-54 474-544 (924)
122 COG0553 HepA Superfamily II DN 95.1 0.04 8.6E-07 48.5 5.3 49 1-49 767-815 (866)
123 KOG0949|consensus 94.8 0.055 1.2E-06 49.2 5.1 67 1-69 992-1061(1330)
124 COG1198 PriA Primosomal protei 94.7 0.067 1.5E-06 47.3 5.4 50 1-50 538-599 (730)
125 PF13871 Helicase_C_4: Helicas 94.4 0.14 3E-06 40.4 6.0 69 1-69 65-144 (278)
126 KOG1000|consensus 93.9 0.054 1.2E-06 46.1 3.0 69 2-70 549-620 (689)
127 COG4889 Predicted helicase [Ge 93.8 0.078 1.7E-06 48.0 3.9 46 7-52 538-586 (1518)
128 TIGR01407 dinG_rel DnaQ family 93.5 0.06 1.3E-06 48.3 2.9 54 1-54 729-814 (850)
129 KOG1015|consensus 93.2 0.049 1.1E-06 49.6 1.8 49 1-49 1222-1270(1567)
130 TIGR00596 rad1 DNA repair prot 91.9 0.3 6.6E-06 43.8 5.1 47 2-51 431-511 (814)
131 KOG0388|consensus 91.7 0.16 3.5E-06 45.1 3.0 47 1-47 1099-1145(1185)
132 KOG0951|consensus 91.6 0.19 4.1E-06 47.0 3.4 52 1-52 637-700 (1674)
133 CHL00122 secA preprotein trans 91.3 1.4 3.1E-05 39.9 8.4 24 32-55 609-632 (870)
134 KOG0389|consensus 90.9 0.41 8.8E-06 42.8 4.7 54 1-54 833-888 (941)
135 TIGR02562 cas3_yersinia CRISPR 89.6 0.29 6.3E-06 45.0 2.8 40 1-43 842-881 (1110)
136 KOG0701|consensus 89.4 0.12 2.6E-06 49.1 0.4 42 1-42 358-399 (1606)
137 KOG0925|consensus 89.2 0.32 7E-06 41.5 2.6 53 1-54 317-387 (699)
138 KOG0952|consensus 88.9 2.6 5.7E-05 39.0 8.2 52 1-53 426-490 (1230)
139 KOG0386|consensus 88.9 0.76 1.7E-05 42.1 4.9 51 1-51 783-833 (1157)
140 TIGR00348 hsdR type I site-spe 88.8 1.1 2.3E-05 39.4 5.7 40 1-41 595-634 (667)
141 PF13307 Helicase_C_2: Helicas 88.8 0.74 1.6E-05 33.1 4.0 54 1-54 63-150 (167)
142 smart00492 HELICc3 helicase su 88.0 1.3 2.7E-05 31.3 4.7 26 1-26 52-79 (141)
143 KOG0392|consensus 87.5 0.63 1.4E-05 43.5 3.5 50 1-51 1399-1448(1549)
144 smart00491 HELICc2 helicase su 86.0 1.9 4.1E-05 30.4 4.7 24 2-25 52-79 (142)
145 COG1199 DinG Rad3-related DNA 82.9 2.3 4.9E-05 36.9 4.8 54 1-54 532-617 (654)
146 PRK08074 bifunctional ATP-depe 82.3 4.4 9.4E-05 37.1 6.5 54 1-54 808-893 (928)
147 COG4096 HsdR Type I site-speci 81.3 1 2.2E-05 40.5 2.0 39 2-40 486-524 (875)
148 PRK11747 dinG ATP-dependent DN 75.5 5.9 0.00013 35.1 5.0 25 1-25 589-615 (697)
149 PRK07246 bifunctional ATP-depe 72.7 14 0.00031 33.3 6.9 54 1-54 698-783 (820)
150 KOG1513|consensus 70.2 7.2 0.00016 35.6 4.2 67 3-69 863-940 (1300)
151 PRK09401 reverse gyrase; Revie 67.9 11 0.00023 35.6 5.1 41 26-69 517-561 (1176)
152 COG0653 SecA Preprotein transl 67.6 5.5 0.00012 36.0 3.0 53 2-54 482-545 (822)
153 TIGR00604 rad3 DNA repair heli 67.3 11 0.00023 33.4 4.8 50 5-54 592-674 (705)
154 PF10593 Z1: Z1 domain; Inter 62.9 18 0.0004 27.7 4.8 51 4-54 142-193 (239)
155 PRK15483 type III restriction- 59.6 33 0.00072 31.9 6.5 70 1-70 505-583 (986)
156 COG1110 Reverse gyrase [DNA re 58.4 10 0.00022 35.3 3.1 41 25-68 526-570 (1187)
157 TIGR03117 cas_csf4 CRISPR-asso 58.0 47 0.001 29.4 7.0 25 1-25 526-560 (636)
158 PRK14873 primosome assembly pr 56.6 20 0.00044 31.7 4.6 53 1-54 475-539 (665)
159 KOG0391|consensus 55.4 27 0.00059 33.5 5.2 48 1-52 1332-1385(1958)
160 PF06862 DUF1253: Protein of u 51.9 41 0.00088 28.4 5.4 44 11-54 366-415 (442)
161 TIGR01054 rgy reverse gyrase. 50.7 10 0.00022 35.7 1.9 40 26-68 515-558 (1171)
162 KOG4439|consensus 49.6 18 0.00039 32.5 3.1 48 2-49 804-851 (901)
163 PF00098 zf-CCHC: Zinc knuckle 49.0 18 0.00039 16.3 1.7 17 97-113 2-18 (18)
164 COG3587 Restriction endonuclea 48.9 1.2E+02 0.0025 28.2 8.0 68 2-69 488-567 (985)
165 PRK14701 reverse gyrase; Provi 44.4 16 0.00035 35.6 2.2 40 26-68 494-537 (1638)
166 PRK12902 secA preprotein trans 43.7 14 0.00031 33.9 1.6 23 33-55 667-689 (939)
167 PLN02390 molybdopterin synthas 42.0 35 0.00076 23.1 3.0 44 32-77 58-101 (111)
168 COG1110 Reverse gyrase [DNA re 36.9 20 0.00044 33.5 1.5 22 5-26 395-417 (1187)
169 PHA03371 circ protein; Provisi 36.6 31 0.00067 26.6 2.3 47 6-52 29-89 (240)
170 cd00756 MoaE MoaE family. Memb 34.1 48 0.001 22.8 2.8 43 32-76 69-111 (124)
171 KOG1016|consensus 32.3 63 0.0014 29.9 3.7 50 1-50 794-843 (1387)
172 KOG2281|consensus 30.8 23 0.0005 31.6 0.9 47 2-49 330-376 (867)
173 COG0314 MoaE Molybdopterin con 30.7 58 0.0013 23.3 2.8 45 31-77 81-125 (149)
174 PRK10678 moaE molybdopterin gu 29.9 64 0.0014 23.1 2.9 44 32-77 82-125 (150)
175 COG1182 AcpD Acyl carrier prot 28.1 29 0.00063 26.2 0.9 22 19-40 97-118 (202)
176 KOG2340|consensus 27.0 1.7E+02 0.0037 25.8 5.3 46 9-54 616-668 (698)
177 PF13696 zf-CCHC_2: Zinc knuck 25.0 32 0.0007 18.1 0.5 20 94-113 7-26 (32)
178 KOG1002|consensus 24.6 1.4E+02 0.003 26.2 4.4 50 2-51 695-746 (791)
179 TIGR01916 F420_cofE F420-0:gam 23.3 1.7E+02 0.0036 22.8 4.3 43 8-52 104-168 (243)
180 PF14392 zf-CCHC_4: Zinc knuck 23.2 39 0.00084 19.1 0.7 18 96-113 32-49 (49)
181 PF13917 zf-CCHC_3: Zinc knuck 22.5 92 0.002 17.4 2.1 20 94-113 3-22 (42)
182 KOG0298|consensus 21.5 40 0.00087 32.2 0.7 43 2-44 1272-1314(1394)
183 TIGR02606 antidote_CC2985 puta 20.7 2.1E+02 0.0047 17.4 5.4 24 20-43 2-25 (69)
184 KOG0336|consensus 20.1 92 0.002 26.6 2.4 40 34-73 555-594 (629)
185 PF14475 Mso1_Sec1_bdg: Sec1-b 20.1 95 0.0021 17.3 1.8 23 56-78 19-41 (41)
186 PF10357 Kin17_mid: Domain of 20.1 1.7E+02 0.0038 20.4 3.5 29 26-54 62-94 (127)
187 KOG1133|consensus 20.1 1.8E+02 0.004 26.3 4.3 48 7-54 699-780 (821)
No 1
>KOG0341|consensus
Probab=99.97 E-value=9.3e-32 Score=215.04 Aligned_cols=133 Identities=74% Similarity=1.205 Sum_probs=125.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
|||||+++.|+|+|++.+|||||+|.++++|+||+||+||.|+.|.+.+|++...++..+.+++..+.+.++++|+.|..
T Consensus 475 LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~ 554 (610)
T KOG0341|consen 475 LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAE 554 (610)
T ss_pred EEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--HHHhhCCCCCCCCcCCCCCcccccccchHHHHHHHhhhcCCccccCcC
Q psy7792 81 LESETE--KFLDLGGDERGCAYCGGLGHRITACPKLEAVQTKAASSIGRRDYLNSN 134 (138)
Q Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~crr~~~~~~ 134 (138)
+....+ .+++. +.+.+|.||+|+||++++|+|++.++.+..++..|++|+.+.
T Consensus 555 L~~~~E~~~~a~~-~~~kGCayCgGLGHRItdCPKle~~~~k~~sn~gRkdy~~~~ 609 (610)
T KOG0341|consen 555 LAGPMEEETIADA-GGEKGCAYCGGLGHRITDCPKLEAQQNKQISNIGRKDYLGSG 609 (610)
T ss_pred hCCCccccccccC-CCccccccccCCCcccccCchhhhhcchhhhhhccccccCCC
Confidence 987666 34443 577899999999999999999999999999999999999875
No 2
>KOG0331|consensus
Probab=99.86 E-value=4.9e-22 Score=164.78 Aligned_cols=84 Identities=50% Similarity=0.827 Sum_probs=78.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
|||||+++||||+|+|++|||||+|.+++.|+||+||+||+|+.|.+++|++.. +......+.+.+.+..+.+|+.+..
T Consensus 395 LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~-~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 395 LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSD-NAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHH-HHHHHHHHHHHHHHccCCCChHHHH
Confidence 799999999999999999999999999999999999999999999999999987 8889999999999999999998776
Q ss_pred HHHHH
Q psy7792 81 LESET 85 (138)
Q Consensus 81 ~~~~~ 85 (138)
.....
T Consensus 474 ~~~~~ 478 (519)
T KOG0331|consen 474 YARVS 478 (519)
T ss_pred HHhhc
Confidence 65443
No 3
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=5.9e-22 Score=166.62 Aligned_cols=60 Identities=33% Similarity=0.564 Sum_probs=55.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLL 61 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~ 61 (138)
||||.+|+||||+|||++|||||+|.++++|+|++|||||+|.++.|++||++. |....+
T Consensus 284 iVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~-D~~~~~ 343 (590)
T COG0514 284 MVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPE-DIRWQR 343 (590)
T ss_pred EEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccc-cHHHHH
Confidence 699999999999999999999999999999999999999999999999999998 444333
No 4
>KOG0328|consensus
Probab=99.85 E-value=1.3e-21 Score=151.69 Aligned_cols=79 Identities=37% Similarity=0.744 Sum_probs=75.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||+||+++||||+|.|++|||||+|.+.+.|+||+||.||.|++|++|.|+... +...++++++++.....++|..+.+
T Consensus 320 LitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~-d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 320 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHH-HHHHHHHHHHHHhhhcccccchhhh
Confidence 689999999999999999999999999999999999999999999999999876 9999999999999999999987654
No 5
>KOG0336|consensus
Probab=99.84 E-value=1.2e-20 Score=152.27 Aligned_cols=87 Identities=44% Similarity=0.761 Sum_probs=83.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
|||||+++||||++||.+|+|||+|.+++.|+||+||+||+|+.|.+++|++.+ |..+...+.+.+....+++|..|-.
T Consensus 519 LvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~-D~~~a~eLI~ILe~aeQevPdeL~~ 597 (629)
T KOG0336|consen 519 LVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRN-DWSMAEELIQILERAEQEVPDELVR 597 (629)
T ss_pred EEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehh-hHHHHHHHHHHHHHhhhhCcHHHHH
Confidence 799999999999999999999999999999999999999999999999999987 9999999999999999999999988
Q ss_pred HHHHHHHH
Q psy7792 81 LESETEKF 88 (138)
Q Consensus 81 ~~~~~~~~ 88 (138)
.++.++..
T Consensus 598 mAeryk~~ 605 (629)
T KOG0336|consen 598 MAERYKLK 605 (629)
T ss_pred HHHHHHhh
Confidence 88877654
No 6
>KOG0335|consensus
Probab=99.83 E-value=7.2e-21 Score=156.12 Aligned_cols=80 Identities=54% Similarity=0.953 Sum_probs=76.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||++++||||+|+|++|||||+|.+...|+|||||+||+|..|.+++|++.. +......+.+.+.+.++++|+||.+
T Consensus 391 lVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~-~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 391 LVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK-NQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred EEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc-cchhHHHHHHHHHHhcccCcHHHHh
Confidence 699999999999999999999999999999999999999999999999999954 8889999999999999999999988
Q ss_pred H
Q psy7792 81 L 81 (138)
Q Consensus 81 ~ 81 (138)
+
T Consensus 470 ~ 470 (482)
T KOG0335|consen 470 L 470 (482)
T ss_pred h
Confidence 4
No 7
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.83 E-value=3.6e-21 Score=170.46 Aligned_cols=54 Identities=26% Similarity=0.517 Sum_probs=52.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||++|+||||+|+|++|||||+|.+++.|+||+|||||+|.+|.+|+||+..
T Consensus 734 LVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 734 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred EEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHH
Confidence 699999999999999999999999999999999999999999999999999876
No 8
>PTZ00110 helicase; Provisional
Probab=99.83 E-value=1.9e-20 Score=157.82 Aligned_cols=84 Identities=50% Similarity=0.852 Sum_probs=79.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||++++||||+|+|++|||||+|.++++|+||+||+||+|+.|.+++|+++. +......+.+.+....+.+|++|..
T Consensus 431 LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~-~~~~~~~l~~~l~~~~q~vp~~l~~ 509 (545)
T PTZ00110 431 MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPD-KYRLARDLVKVLREAKQPVPPELEK 509 (545)
T ss_pred EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcc-hHHHHHHHHHHHHHccCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999987 8888999999999999999999988
Q ss_pred HHHHH
Q psy7792 81 LESET 85 (138)
Q Consensus 81 ~~~~~ 85 (138)
+....
T Consensus 510 ~~~~~ 514 (545)
T PTZ00110 510 LSNER 514 (545)
T ss_pred HHHHh
Confidence 85433
No 9
>KOG0333|consensus
Probab=99.83 E-value=6.6e-21 Score=156.99 Aligned_cols=80 Identities=49% Similarity=0.847 Sum_probs=69.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH-HhcccCcHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL-EARQRIPPFLA 79 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~ 79 (138)
|||||+++||||+|+|.+|||||++++++.|+|||||+||+|+.|.+++|+++. +..++.+|+..+. ......|+.+.
T Consensus 571 lVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~-dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 571 LVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPA-DTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred EEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccc-hhHHHHHHHHHHHHhhhccCChhhc
Confidence 699999999999999999999999999999999999999999999999999998 7777778877766 44555666554
Q ss_pred HH
Q psy7792 80 EL 81 (138)
Q Consensus 80 ~~ 81 (138)
..
T Consensus 650 ~h 651 (673)
T KOG0333|consen 650 NH 651 (673)
T ss_pred cC
Confidence 43
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.81 E-value=5.7e-20 Score=154.04 Aligned_cols=81 Identities=37% Similarity=0.689 Sum_probs=76.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||++++||||+|+|++|||||+|.++++|+||+|||||.|..|.+++|+++. +...+..+.+.++..++.+|++|..
T Consensus 422 LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~-~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 422 IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEE-DRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchh-HHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 699999999999999999999999999999999999999999999999999876 7788899999999999999998876
Q ss_pred HH
Q psy7792 81 LE 82 (138)
Q Consensus 81 ~~ 82 (138)
..
T Consensus 501 ~~ 502 (518)
T PLN00206 501 SR 502 (518)
T ss_pred Ch
Confidence 53
No 11
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.80 E-value=5.2e-20 Score=156.82 Aligned_cols=54 Identities=30% Similarity=0.608 Sum_probs=52.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||++++||||+|+|++|||||+|.++++|+||+|||||+|.+|.+++|+++.
T Consensus 290 LVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~ 343 (607)
T PRK11057 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred EEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHH
Confidence 699999999999999999999999999999999999999999999999999987
No 12
>KOG0330|consensus
Probab=99.80 E-value=1.3e-19 Score=145.17 Aligned_cols=72 Identities=39% Similarity=0.739 Sum_probs=66.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhccc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR 73 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 73 (138)
|||||+++||+|+|+|++|||||+|.+...||||+||+||+|.+|.+|+|++.- |...+..|+..+.+...+
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqy-Dve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQY-DVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehh-hhHHHHHHHHHHhcCCCc
Confidence 699999999999999999999999999999999999999999999999999985 788888888888777655
No 13
>KOG0342|consensus
Probab=99.79 E-value=1.2e-19 Score=148.28 Aligned_cols=84 Identities=39% Similarity=0.610 Sum_probs=68.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
|||||+++||+|+|+|++||+||+|++++.||||+||+||.|+.|.+++++.|. +..+++.+++.-.+..+-.+.....
T Consensus 384 L~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~-El~Flr~LK~lpl~~~e~~~~~~~~ 462 (543)
T KOG0342|consen 384 LVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPW-ELGFLRYLKKLPLEEFEFPPLKPED 462 (543)
T ss_pred EEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChh-HHHHHHHHhhCCCcccCCCCCCHHH
Confidence 699999999999999999999999999999999999999999999999999997 7888888875433333333333333
Q ss_pred HHHHH
Q psy7792 81 LESET 85 (138)
Q Consensus 81 ~~~~~ 85 (138)
+....
T Consensus 463 v~~~~ 467 (543)
T KOG0342|consen 463 VQSQL 467 (543)
T ss_pred HHHHH
Confidence 33333
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=6.9e-20 Score=153.46 Aligned_cols=70 Identities=49% Similarity=0.868 Sum_probs=64.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
|||||+++||||+++|++|||||+|.+++.|+||+||+||+|+.|.+++|+++.++...+..+++.....
T Consensus 327 LVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 327 LVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred EEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999999999865788888888876555
No 15
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1.5e-19 Score=149.82 Aligned_cols=60 Identities=30% Similarity=0.528 Sum_probs=55.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLL 61 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~ 61 (138)
||||++++||||+|+|++||||++|.+++.|+||+|||||+|.+|.+++|+++. +...++
T Consensus 280 LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~-d~~~~~ 339 (470)
T TIGR00614 280 VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA-DINRLR 339 (470)
T ss_pred EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh-HHHHHH
Confidence 699999999999999999999999999999999999999999999999999987 443333
No 16
>KOG0340|consensus
Probab=99.78 E-value=1.9e-19 Score=142.89 Aligned_cols=74 Identities=35% Similarity=0.677 Sum_probs=66.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIP 75 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 75 (138)
|||||+++||+|+|.|.+|||||+|.+|..|+||+||++|+|+.|.+|+++++. |...+..++....+...+.+
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~r-Dv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQR-DVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechh-hHHHHHHHHHHHhccccccc
Confidence 699999999999999999999999999999999999999999999999999977 77777777777666655443
No 17
>KOG0326|consensus
Probab=99.78 E-value=2e-19 Score=141.54 Aligned_cols=76 Identities=38% Similarity=0.681 Sum_probs=70.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 77 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 77 (138)
|||||.+.||||+++|++|||||+|+++++|+||+||+||.|..|.||++++.+ |...+..++..+......+|+.
T Consensus 376 LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLitye-drf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 376 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYE-DRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehh-hhhhHHHHHHHhccccccCCCc
Confidence 799999999999999999999999999999999999999999999999999997 8888888888888777777764
No 18
>KOG0332|consensus
Probab=99.75 E-value=1.5e-18 Score=138.48 Aligned_cols=76 Identities=36% Similarity=0.743 Sum_probs=67.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCC------CHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRI 74 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~------~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 74 (138)
||+|++++||||++.|+.|||||+|. ++++|+||+||+||.|+.|.+|+++.......++..|+++++.....+
T Consensus 384 LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 384 LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 69999999999999999999999994 699999999999999999999999988877788888888886665554
Q ss_pred cH
Q psy7792 75 PP 76 (138)
Q Consensus 75 ~~ 76 (138)
.+
T Consensus 464 ~~ 465 (477)
T KOG0332|consen 464 DP 465 (477)
T ss_pred CC
Confidence 44
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.75 E-value=4.2e-19 Score=145.11 Aligned_cols=69 Identities=43% Similarity=0.761 Sum_probs=61.4
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
|||||+++||||+|+|++|||||+|.+++.|+||+||+||+|+.|.+|+|+++. +...+..+++.+...
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~-~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE-YALNLPAIETYIGHS 377 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHH-HHHHHHHHHHHhCCC
Confidence 699999999999999999999999999999999999999999999999999886 566666666555444
No 20
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.75 E-value=2.2e-18 Score=146.26 Aligned_cols=54 Identities=37% Similarity=0.660 Sum_probs=52.4
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||++++||||+|+|++|||||+|.++++|+||+|||||+|..+.+++++++.
T Consensus 278 lVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 278 MVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred EEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHH
Confidence 699999999999999999999999999999999999999999999999999876
No 21
>KOG0345|consensus
Probab=99.74 E-value=1.6e-18 Score=141.47 Aligned_cols=62 Identities=42% Similarity=0.725 Sum_probs=56.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDL 63 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l 63 (138)
|+|||+++||||+|+|++||+||+|.++++|+||+||+||.|+.|.||+|+.+. ++.++..+
T Consensus 311 l~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~-E~aYveFl 372 (567)
T KOG0345|consen 311 LFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR-EEAYVEFL 372 (567)
T ss_pred EEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEeccc-HHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999996 55444433
No 22
>KOG0344|consensus
Probab=99.73 E-value=5.4e-18 Score=140.88 Aligned_cols=83 Identities=33% Similarity=0.667 Sum_probs=77.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||++++||||+.+|+.|||||+|.+.-+|+||+||+||+|+.|.||+||+.. +-...+.+...+...+.++|.++..
T Consensus 442 LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~-d~~~ir~iae~~~~sG~evpe~~m~ 520 (593)
T KOG0344|consen 442 LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQ-DMPRIRSIAEVMEQSGCEVPEKIMG 520 (593)
T ss_pred EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccc-cchhhhhHHHHHHHcCCcchHHHHh
Confidence 699999999999999999999999999999999999999999999999999986 8888999999999999999999877
Q ss_pred HHHH
Q psy7792 81 LESE 84 (138)
Q Consensus 81 ~~~~ 84 (138)
+..-
T Consensus 521 ~~k~ 524 (593)
T KOG0344|consen 521 IKKL 524 (593)
T ss_pred hhhh
Confidence 7653
No 23
>KOG0352|consensus
Probab=99.73 E-value=8.7e-18 Score=136.40 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=57.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLK 64 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~ 64 (138)
++||..|+||+|+|+|++|||||+|.|+..|+|+.|||||+|.++++-+||+.+ |...+..+.
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~-D~~~i~FLi 371 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQ-DKNALNFLV 371 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeeccc-chHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999987 555554443
No 24
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.71 E-value=8.4e-18 Score=138.88 Aligned_cols=69 Identities=48% Similarity=0.858 Sum_probs=62.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
||||++++||||+|+|++|||||+|.++++|+||+||+||+|..|.+++|+... +...+..+++.+...
T Consensus 299 LVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~-d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVD-EHKLLRDIEKLLKKE 367 (456)
T ss_pred EEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHH-HHHHHHHHHHHhcCC
Confidence 699999999999999999999999999999999999999999999999999886 777777777765544
No 25
>KOG0348|consensus
Probab=99.70 E-value=2.1e-17 Score=136.79 Aligned_cols=66 Identities=38% Similarity=0.644 Sum_probs=60.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLL 67 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~ 67 (138)
|+|||+++||||+|+|.+||+||.|.+++.|+||+||++|+|..|.+++|+.|. +..++..+++..
T Consensus 501 LLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~-Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 501 LLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPS-EAEYVNYLKKHH 566 (708)
T ss_pred EEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEeccc-HHHHHHHHHhhc
Confidence 689999999999999999999999999999999999999999999999999999 555666666543
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.69 E-value=2.3e-17 Score=135.06 Aligned_cols=67 Identities=43% Similarity=0.870 Sum_probs=60.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
||||++++||||+|+|++|||||+|.+.+.|+||+||+||+|..|.+++|++.. +...+..++.++.
T Consensus 299 LVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~-d~~~~~~i~~~~~ 365 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAH-DHLLLGKIERYIE 365 (434)
T ss_pred EEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHH-HHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999876 6666666665544
No 27
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.69 E-value=2.5e-17 Score=135.96 Aligned_cols=67 Identities=43% Similarity=0.696 Sum_probs=60.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
||||+++++|||+|+|++|||||+|.++++|+||+||+||+|+.|.+++|+++. +...+..+++.+.
T Consensus 296 LVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~-e~~~~~~i~~~~~ 362 (460)
T PRK11776 296 LVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPE-EMQRANAIEDYLG 362 (460)
T ss_pred EEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchh-HHHHHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999887 5666666666554
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.69 E-value=3.2e-17 Score=135.94 Aligned_cols=70 Identities=44% Similarity=0.826 Sum_probs=63.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEAR 71 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~ 71 (138)
||||+++++|||+++|++|||||+|.++.+|+||+||+||.|+.|.+++|++.. |...+..+++.+....
T Consensus 389 LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 389 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED-DAFQLPEIEELLGRKI 458 (475)
T ss_pred EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH-HHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999999999999999999999999876 6777777777765543
No 29
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.69 E-value=3.4e-17 Score=140.11 Aligned_cols=67 Identities=48% Similarity=0.872 Sum_probs=60.4
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
||||+++++|||+|+|++|||||+|.++++|+||+||+||+|+.|.+++|+++. +...+..+++.++
T Consensus 299 LVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~-e~~~l~~ie~~~~ 365 (629)
T PRK11634 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR-ERRLLRNIERTMK 365 (629)
T ss_pred EEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechH-HHHHHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999876 5666666665543
No 30
>KOG0338|consensus
Probab=99.68 E-value=4.6e-17 Score=134.23 Aligned_cols=65 Identities=46% Similarity=0.870 Sum_probs=60.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHL 66 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~ 66 (138)
|||||+++|||||+.|..||||++|.+.+.|+||+||++|+|+.|.+|+|+... +..+++.+.+.
T Consensus 480 LiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 480 LIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred EEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccc-cHHHHHHHHhh
Confidence 799999999999999999999999999999999999999999999999999887 77777777665
No 31
>KOG0351|consensus
Probab=99.68 E-value=4e-17 Score=143.75 Aligned_cols=55 Identities=29% Similarity=0.558 Sum_probs=53.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+|||.+|+||||+|||+.||||.+|++++.|+|++|||||+|..+.+++|+...+
T Consensus 539 ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D 593 (941)
T KOG0351|consen 539 IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYAD 593 (941)
T ss_pred EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhH
Confidence 5899999999999999999999999999999999999999999999999999873
No 32
>KOG0350|consensus
Probab=99.68 E-value=3e-17 Score=134.88 Aligned_cols=68 Identities=37% Similarity=0.663 Sum_probs=61.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
|||||+++||||+.+|..|||||+|.+..+|+||+||++|+|+.|.|+++.+..+...+.+.+++...
T Consensus 487 LIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 487 LICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred EEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 79999999999999999999999999999999999999999999999999999866666665555444
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.68 E-value=4e-17 Score=138.44 Aligned_cols=68 Identities=46% Similarity=0.720 Sum_probs=60.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
||||+++++|||+++|++|||||+|.+++.|+||+||+||.|+.|.+|+|+++. +...+..+++.+..
T Consensus 311 LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~i~~~~~~ 378 (572)
T PRK04537 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPDIEAYIEQ 378 (572)
T ss_pred EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHHHHHHHcC
Confidence 799999999999999999999999999999999999999999999999999876 55566666665543
No 34
>KOG0343|consensus
Probab=99.66 E-value=1.3e-16 Score=132.53 Aligned_cols=89 Identities=34% Similarity=0.602 Sum_probs=70.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHH--HHhcccCcHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLL--LEARQRIPPFL 78 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~l 78 (138)
|+|||+++||||+|.|+|||++|-|.++++||||+||++|.+..|.++++++|++++.++..+.+.. ......-|..+
T Consensus 369 LF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~ 448 (758)
T KOG0343|consen 369 LFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKL 448 (758)
T ss_pred EEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHh
Confidence 6899999999999999999999999999999999999999999999999999997677777776641 11122224445
Q ss_pred HHHHHHHHHHH
Q psy7792 79 AELESETEKFL 89 (138)
Q Consensus 79 ~~~~~~~~~~~ 89 (138)
..+....+.++
T Consensus 449 ~~i~~~l~~ll 459 (758)
T KOG0343|consen 449 TSIRNKLEALL 459 (758)
T ss_pred hhHHHHHHHHH
Confidence 55555554443
No 35
>PTZ00424 helicase 45; Provisional
Probab=99.66 E-value=5.3e-17 Score=131.09 Aligned_cols=75 Identities=36% Similarity=0.740 Sum_probs=65.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
||||+++++|||+|+|++|||||+|.++..|+||+||+||.|+.|.+++|+++. +...+..+++.+....++.++
T Consensus 321 LvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 321 LITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPD-DIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHH-HHHHHHHHHHHHCCcccccCc
Confidence 699999999999999999999999999999999999999999999999999876 666677777666655555443
No 36
>KOG0347|consensus
Probab=99.64 E-value=8e-17 Score=133.72 Aligned_cols=69 Identities=38% Similarity=0.639 Sum_probs=61.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
|||||+++||||||.|.+||||-+|.+.+-|+||.||++|++..|..++++.|. +...+..+-+.++..
T Consensus 517 LiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~-e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 517 LIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ-EVGPLKKLCKTLKKK 585 (731)
T ss_pred EEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH-HhHHHHHHHHHHhhc
Confidence 699999999999999999999999999999999999999999999999999998 455555555555544
No 37
>KOG0329|consensus
Probab=99.63 E-value=1.1e-16 Score=123.15 Aligned_cols=77 Identities=39% Similarity=0.729 Sum_probs=67.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 77 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 77 (138)
||||++|+||+|+..|+.|||||+|.++.+|+||+|||||.|.+|.+|+|++..++..++..+.........++|..
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 68999999999999999999999999999999999999999999999999998888777777766665555555553
No 38
>KOG0339|consensus
Probab=99.63 E-value=8e-16 Score=127.03 Aligned_cols=87 Identities=43% Similarity=0.670 Sum_probs=83.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
|||||+++||+|+++++.|||||+-.+++.|.||+||+||+|..|.+++|++.. |..+...|.+.+....+.+|+.|.+
T Consensus 522 lvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeK-Da~fAG~LVnnLe~agQnVP~~l~d 600 (731)
T KOG0339|consen 522 LVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEK-DAEFAGHLVNNLEGAGQNVPDELMD 600 (731)
T ss_pred EEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechh-hHHHhhHHHHHHhhccccCChHHHH
Confidence 699999999999999999999999999999999999999999999999999998 7889999999999999999999999
Q ss_pred HHHHHHHH
Q psy7792 81 LESETEKF 88 (138)
Q Consensus 81 ~~~~~~~~ 88 (138)
+......|
T Consensus 601 lamk~s~f 608 (731)
T KOG0339|consen 601 LAMKSSWF 608 (731)
T ss_pred HHhhhhhh
Confidence 99888655
No 39
>KOG0327|consensus
Probab=99.62 E-value=2e-16 Score=126.27 Aligned_cols=79 Identities=35% Similarity=0.751 Sum_probs=74.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||+|+.++||||+.++..|||||+|.+.++|+||+||+||.|++|.++.+++.. +...++++++++....+++|....+
T Consensus 317 lIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~-d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 317 LITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEE-DVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred EeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHh-hHHHHHhHHHhcCCcceecccchhh
Confidence 699999999999999999999999999999999999999999999999999887 8999999999999998888876544
No 40
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.60 E-value=7.2e-16 Score=134.09 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=58.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC-CcHHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS-NDESVLLDLKHLLLE 69 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~-~~~~~~~~l~~~~~~ 69 (138)
|||||++++|||+++|++|||||+|.++++|+||+|||||.|+.|.++++.+.. .|...+...++.++.
T Consensus 333 LVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 333 VATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred EEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcC
Confidence 699999999999999999999999999999999999999999999999998643 244455555555443
No 41
>KOG0334|consensus
Probab=99.58 E-value=5.6e-15 Score=129.23 Aligned_cols=91 Identities=41% Similarity=0.662 Sum_probs=82.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||++++||+|++++.+|||||+|...+.|+||+||+||+|++|.|++|+++. +..+..+|.+.+...++.+|..+..
T Consensus 667 LvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~-q~~~a~dl~~al~~~~~~~P~~l~~ 745 (997)
T KOG0334|consen 667 LVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPD-QLKYAGDLCKALELSKQPVPKLLQA 745 (997)
T ss_pred EEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChH-HhhhHHHHHHHHHhccCCCchHHHH
Confidence 699999999999999999999999999999999999999999999999999994 8888999999999999999988888
Q ss_pred HHHHHHHHHhhC
Q psy7792 81 LESETEKFLDLG 92 (138)
Q Consensus 81 ~~~~~~~~~~~~ 92 (138)
+..........+
T Consensus 746 l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 746 LSERFKAKQKAG 757 (997)
T ss_pred HHHHHHhhhhcc
Confidence 877776554444
No 42
>KOG0353|consensus
Probab=99.57 E-value=1.1e-15 Score=123.09 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=66.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHH-------------------------------------------Hhhc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVH-------------------------------------------RIGR 37 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~q-------------------------------------------r~GR 37 (138)
+|||-+|+||||.|+|++|||..+|++++.|+| +.||
T Consensus 371 ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgr 450 (695)
T KOG0353|consen 371 IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGR 450 (695)
T ss_pred EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccc
Confidence 589999999999999999999999999999999 8999
Q ss_pred cccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHH
Q psy7792 38 TGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLA 79 (138)
Q Consensus 38 agR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 79 (138)
|||++.++.+|+||.-. |......+..+.+...+.+-.++.
T Consensus 451 agrd~~~a~cilyy~~~-difk~ssmv~~e~~g~q~ly~mv~ 491 (695)
T KOG0353|consen 451 AGRDDMKADCILYYGFA-DIFKISSMVQMENTGIQKLYEMVR 491 (695)
T ss_pred cccCCCcccEEEEechH-HHHhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999776 666666677776666666555433
No 43
>KOG0346|consensus
Probab=99.52 E-value=1.4e-14 Score=117.94 Aligned_cols=63 Identities=35% Similarity=0.719 Sum_probs=53.9
Q ss_pred cccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHH
Q psy7792 6 VASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 6 ~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
-.+||||+.+|..|||||+|.++.+||||+||++|++++|.+++|+.|. +......++..+..
T Consensus 362 GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~-e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 362 GVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK-EEFGKESLESILKD 424 (569)
T ss_pred chhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch-HHhhhhHHHHHHhh
Confidence 3579999999999999999999999999999999999999999999998 44434555555444
No 44
>KOG4284|consensus
Probab=99.51 E-value=1.9e-14 Score=121.72 Aligned_cols=63 Identities=37% Similarity=0.697 Sum_probs=56.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDL 63 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l 63 (138)
||+||+.+||||-++|++|||.|+|.+-++|+||||||||.|..|.+|+|+....+..-+..|
T Consensus 326 LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 799999999999999999999999999999999999999999999999999877553444444
No 45
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.51 E-value=1.4e-14 Score=92.03 Aligned_cols=42 Identities=48% Similarity=0.884 Sum_probs=40.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSG 42 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g 42 (138)
||||+++++|||+|++++||++++|+++..|+|++||++|.|
T Consensus 37 li~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 37 LIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp EEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred EEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 689999999999999999999999999999999999999986
No 46
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=5.3e-14 Score=120.42 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=51.7
Q ss_pred CeecccccccCCCC---Ccc-----EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFE---EIK-----HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~---~V~-----~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
|||||+++||+|++ +|. +|||||+|.+...|+||+||+||.|.+|.+++|++..
T Consensus 525 lVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 525 TVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred EEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 59999999999999 777 9999999999999999999999999999999999986
No 47
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=3.4e-13 Score=117.54 Aligned_cols=55 Identities=31% Similarity=0.488 Sum_probs=52.4
Q ss_pred CeecccccccCCC---CCcc-----EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDF---EEIK-----HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~---~~V~-----~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+||||+++||+|+ ++|. +|||||+|.+...|.||+||+||.|.+|.+++|++..+
T Consensus 480 lIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 480 TVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred EEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 5999999999999 6999 99999999999999999999999999999999998863
No 48
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.43 E-value=1.9e-13 Score=121.23 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=54.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
||||+++++|+|++.+++|||||+|+||+.|.||+||++|.|+++.+..++-.. .......+...+..
T Consensus 550 LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~-~~t~~e~i~~~~~~ 617 (956)
T PRK04914 550 LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL-EGTAQERLFRWYHE 617 (956)
T ss_pred EEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC-CCCHHHHHHHHHhh
Confidence 699999999999999999999999999999999999999999988765555333 33344444444444
No 49
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.33 E-value=2.4e-12 Score=114.01 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=46.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccC-CCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRS-GKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~-g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|++||+|+.|.++.+|+||+||+||. |..+..+.+....
T Consensus 344 LVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 344 VVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred EEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 69999999999999999999999999999999999999976 4445555555443
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.32 E-value=1.1e-11 Score=106.49 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=49.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCC-CHHHHHHHhhccccCCCcceEEEeee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD-DVENYVHRIGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~-~~~~y~qr~GRagR~g~~g~~i~~~~ 52 (138)
||||+++++|||+|++++||+++.|. +.+.|.||+||+||.|++|.|++++.
T Consensus 512 LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 512 LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 69999999999999999999999997 68888999999999999999999983
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.31 E-value=4.3e-12 Score=109.78 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=49.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCC-CHHHHHHHhhccccCCCcceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD-DVENYVHRIGRTGRSGKTGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~-~~~~y~qr~GRagR~g~~g~~i~~~~~ 53 (138)
||||+++++|+|+|++++||++++|. ..+.|.|++||+||.|.+|.|+++++.
T Consensus 535 LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 535 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 69999999999999999999999997 578888999999999999999999953
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.29 E-value=2e-12 Score=111.48 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=49.9
Q ss_pred CeecccccccCCCCCccEEEEcC---CCC---------CHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD---MPD---------DVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d---lP~---------~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
|||||++++|||+++|++||++| .|. +.++|+||+|||||. ++|.++.|++..+
T Consensus 450 LVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 450 IISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 69999999999999999999999 676 888999999999999 7899999998763
No 53
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.26 E-value=2.5e-11 Score=105.43 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=50.7
Q ss_pred CeecccccccCCCC---------CccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFE---------EIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~---------~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+||||+++||+|++ .+.+|++|++|..... .||+||+||.|.+|.+++|++..+
T Consensus 476 lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 476 TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 59999999999999 9999999999998876 999999999999999999998863
No 54
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.6e-11 Score=101.54 Aligned_cols=53 Identities=34% Similarity=0.559 Sum_probs=50.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|+.||.|++-+|+-.++||.||+||. +.|.++++++..
T Consensus 429 LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 429 LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 79999999999999999999999999999999999999996 778999988766
No 55
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.24 E-value=3.6e-11 Score=104.13 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=51.9
Q ss_pred CeecccccccCCCCC-------ccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEE-------IKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~-------V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+||||.++||+|++. .-+||++++|.+...|.|++||+||.|.+|.+++|++..+
T Consensus 457 tIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 457 TIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred EEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 589999999999998 4499999999999999999999999999999999999873
No 56
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.24 E-value=2e-11 Score=105.24 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=63.7
Q ss_pred CeecccccccCCCCCccEEEEcCC-----CCCHHHHHHHhhccccCCCcceEEEeeeCC--------CcHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM-----PDDVENYVHRIGRTGRSGKTGLATTFINKS--------NDESVLLDLKHLL 67 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl-----P~~~~~y~qr~GRagR~g~~g~~i~~~~~~--------~~~~~~~~l~~~~ 67 (138)
||||+++++|+|+|++++||++|. |.+.++|+||+||+||. ..|.+++|++.. .+....+.+...+
T Consensus 500 lV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 578 (652)
T PRK05298 500 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAY 578 (652)
T ss_pred EEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999985 78999999999999996 789999999843 2455566666677
Q ss_pred HHhcccCcHHH
Q psy7792 68 LEARQRIPPFL 78 (138)
Q Consensus 68 ~~~~~~~~~~l 78 (138)
+.....+|...
T Consensus 579 ~~~~~~~~~~~ 589 (652)
T PRK05298 579 NEEHGITPKTI 589 (652)
T ss_pred hhccCCCChhH
Confidence 77777777643
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.23 E-value=1.1e-11 Score=110.01 Aligned_cols=54 Identities=22% Similarity=0.331 Sum_probs=50.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCC-CHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD-DVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~-~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|++||+++.|. +...|+||+||+||.|+.|.|++++.+.
T Consensus 716 LVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 716 LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 69999999999999999999999975 6889999999999999999999998653
No 58
>KOG0337|consensus
Probab=99.22 E-value=2.4e-12 Score=104.53 Aligned_cols=64 Identities=47% Similarity=0.835 Sum_probs=56.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKH 65 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~ 65 (138)
||.||+++||+|+|-...|||||+|.+..-|+||+||+.|+|+.|++++++.+. +...+-++..
T Consensus 315 lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~-~~~yl~DL~l 378 (529)
T KOG0337|consen 315 LVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVAST-DDPYLLDLQL 378 (529)
T ss_pred EEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecc-cchhhhhhhh
Confidence 689999999999999999999999999999999999999999999999999887 4444444443
No 59
>KOG0349|consensus
Probab=99.22 E-value=5e-12 Score=103.48 Aligned_cols=61 Identities=44% Similarity=0.795 Sum_probs=55.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLD 62 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~ 62 (138)
|||||+++||||+..+.++||..+|.+...|+||+||+||+.+-|.+|+++... .+..+..
T Consensus 562 lictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~-~ekvwyh 622 (725)
T KOG0349|consen 562 LICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATV-PEKVWYH 622 (725)
T ss_pred EEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeecc-chheeeh
Confidence 699999999999999999999999999999999999999999999999999765 4554443
No 60
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.20 E-value=3e-11 Score=104.09 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=52.7
Q ss_pred CeecccccccCCCCCccEEEEcC-----CCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD-----MPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDL 63 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d-----lP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l 63 (138)
||||+++++|+|+|+|++||++| .|.+..+|+||+|||||. ..|.+++|++.. ...+...+
T Consensus 496 LV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~-~~~~~~ai 561 (655)
T TIGR00631 496 LVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI-TDSMQKAI 561 (655)
T ss_pred EEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC-CHHHHHHH
Confidence 58899999999999999999999 899999999999999998 679999999865 44443333
No 61
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.4e-11 Score=107.36 Aligned_cols=55 Identities=25% Similarity=0.447 Sum_probs=52.3
Q ss_pred CeecccccccCCCC---Ccc-----EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFE---EIK-----HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~---~V~-----~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+|||+.++||+||+ +|. +||++++|.+...|.|+.||+||.|.+|.+..|++..+
T Consensus 492 tIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 492 TIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred EEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 58999999999994 899 99999999999999999999999999999999999874
No 62
>PRK13766 Hef nuclease; Provisional
Probab=99.20 E-value=3.5e-11 Score=105.02 Aligned_cols=53 Identities=36% Similarity=0.540 Sum_probs=47.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.++.++...
T Consensus 427 LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 427 LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 6999999999999999999999999999999999999999876 6677776543
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.19 E-value=1e-11 Score=99.12 Aligned_cols=42 Identities=31% Similarity=0.541 Sum_probs=37.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTG 45 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g 45 (138)
||||+++++|||++ +++||+++.| +++|+||+||+||.|+..
T Consensus 282 lvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~ 323 (358)
T TIGR01587 282 IVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKN 323 (358)
T ss_pred EEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCC
Confidence 69999999999995 8999999877 789999999999998653
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.17 E-value=3.1e-11 Score=110.78 Aligned_cols=52 Identities=31% Similarity=0.449 Sum_probs=45.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccC-CCcceEEEeee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRS-GKTGLATTFIN 52 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~-g~~g~~i~~~~ 52 (138)
||||+.+++|||+++|++||||+.|.++.+|+||+||+||. |..+.++.+..
T Consensus 331 LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 331 VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 69999999999999999999999999999999999999985 34455554433
No 65
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.16 E-value=2.2e-11 Score=76.53 Aligned_cols=42 Identities=52% Similarity=0.919 Sum_probs=40.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSG 42 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g 42 (138)
||+|+++++|+|++++++||.+++|+++..|.|++||++|.|
T Consensus 41 li~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 41 LVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred EEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 589999999999999999999999999999999999999975
No 66
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.16 E-value=2.1e-11 Score=83.10 Aligned_cols=50 Identities=46% Similarity=0.856 Sum_probs=46.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEe
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTF 50 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~ 50 (138)
|++|.++++|+|+|.+++||.+++|+++..|+|++||++|.|+.|.++.|
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 58999999999999999999999999999999999999999988877653
No 67
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.12 E-value=2.7e-11 Score=109.57 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=44.5
Q ss_pred CeecccccccCCCCCccEEEEcCCC-CCHHHHHHHhhccccCCCcceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP-DDVENYVHRIGRTGRSGKTGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP-~~~~~y~qr~GRagR~g~~g~~i~~~~~ 53 (138)
||||+++++|||+|+|++||..+.. .++..|+||+||+||.|+.|.+++++..
T Consensus 865 LVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 6999999999999999999933221 1345699999999999999999998754
No 68
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.11 E-value=3.4e-11 Score=105.86 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=48.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCC------------------HHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDD------------------VENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~------------------~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
|||||++++|||+++|++||++++|.. -++|.||+|||||. .+|.|+.+++..
T Consensus 266 lVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 266 VLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred EEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 699999999999999999999999963 34689999999999 799999999865
No 69
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=5.5e-10 Score=98.84 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=50.4
Q ss_pred CeecccccccCCCC---CccE-----EEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFE---EIKH-----VINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~---~V~~-----VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+||||.++||+||+ .|.. ||+++.|.+...|.|++||+||.|.+|.+++|++..+
T Consensus 650 tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 650 TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 59999999999999 6654 5999999999999999999999999999999999863
No 70
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.03 E-value=1.2e-10 Score=102.45 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=47.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCH------------------HHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDV------------------ENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~------------------~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
|||||++++|||+++|++||++++|... ++|+||+|||||. .+|.|+.+++..
T Consensus 269 lvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 269 VLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred EEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 6999999999999999999998888643 5899999999998 689999999865
No 71
>PRK02362 ski2-like helicase; Provisional
Probab=99.01 E-value=4.1e-10 Score=98.20 Aligned_cols=54 Identities=30% Similarity=0.481 Sum_probs=48.8
Q ss_pred CeecccccccCCCCCccEEEE----cC-----CCCCHHHHHHHhhccccCCCc--ceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YD-----MPDDVENYVHRIGRTGRSGKT--GLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~d-----lP~~~~~y~qr~GRagR~g~~--g~~i~~~~~~ 54 (138)
||||+++++|+|+|++++||+ || .|-+..+|.||+|||||.|.. |.++++....
T Consensus 333 LvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 333 ISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred EEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 699999999999999999998 77 689999999999999999864 8899988654
No 72
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.00 E-value=2.4e-10 Score=103.83 Aligned_cols=53 Identities=30% Similarity=0.450 Sum_probs=47.4
Q ss_pred CeecccccccCCCCCccEEEEcC---------------CCC---CHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD---------------MPD---DVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d---------------lP~---~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
|||||++++|||+|+|++||+++ +|. +.++|.||+|||||. .+|.|+.+|+..
T Consensus 341 IVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 341 VLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred EEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 69999999999999999999986 453 458999999999999 689999999865
No 73
>KOG0354|consensus
Probab=98.97 E-value=1.1e-09 Score=94.46 Aligned_cols=52 Identities=38% Similarity=0.532 Sum_probs=47.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+++|+.||-||...++-..+||.|| ||.. .|.++++++..
T Consensus 478 LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~ 529 (746)
T KOG0354|consen 478 LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGS 529 (746)
T ss_pred EEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcch
Confidence 7999999999999999999999999999999999999 8974 47888888744
No 74
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.94 E-value=5.7e-10 Score=101.48 Aligned_cols=53 Identities=26% Similarity=0.398 Sum_probs=48.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCC------------------CHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD------------------DVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~------------------~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
|||||++++|||+|+|++||++++|. |.++|.||+||+||.+ +|.|+.+|+..
T Consensus 334 VLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 334 VLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred EEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 68999999999999999999999653 5689999999999998 89999999865
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=3e-09 Score=92.46 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=48.5
Q ss_pred CeecccccccCCCCCccEEEEcCCC-CCHHHHHHHhhccccCCCcceE-------EEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP-DDVENYVHRIGRTGRSGKTGLA-------TTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP-~~~~~y~qr~GRagR~g~~g~~-------i~~~~~~~ 55 (138)
||+|+++.+|||+|++++||+++.| .+...|+||+||++|.+..+.+ +.|+++..
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 6899999999999999999999998 5999999999999998865554 78887664
No 76
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.90 E-value=1.1e-09 Score=96.21 Aligned_cols=50 Identities=22% Similarity=0.410 Sum_probs=42.4
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCc-ceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKT-GLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~-g~~i~~~~~ 53 (138)
||||+++++|||++. ++||++..| .++|+||+||+||.|+. +.+++++..
T Consensus 340 LVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 340 LVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred EeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 699999999999987 899998777 68999999999999985 444666644
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.90 E-value=1.3e-09 Score=91.33 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=45.0
Q ss_pred Ceec-ccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeee
Q psy7792 1 MVAT-DVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 1 LvaT-~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~ 52 (138)
|||| +++++|+|+|++++||++++|++...|+||+||++|.+.......+++
T Consensus 398 LvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 398 IVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred EEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 5788 899999999999999999999999999999999999876554444443
No 78
>PRK00254 ski2-like helicase; Provisional
Probab=98.83 E-value=6.6e-09 Score=90.52 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=46.4
Q ss_pred CeecccccccCCCCCccEEEE-------cCCCC-CHHHHHHHhhccccCC--CcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN-------YDMPD-DVENYVHRIGRTGRSG--KTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~-------~dlP~-~~~~y~qr~GRagR~g--~~g~~i~~~~~~ 54 (138)
||||+++++|+|+|.+++||+ ++.|. ....|.||+|||||.| ..|.++++..+.
T Consensus 325 LvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 325 ITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred EEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 699999999999999999994 66665 4679999999999965 679999998764
No 79
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.73 E-value=1.2e-08 Score=89.50 Aligned_cols=54 Identities=31% Similarity=0.560 Sum_probs=50.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccc-cCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTG-RSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRag-R~g~~g~~i~~~~~~ 54 (138)
+|||+.++.|||+.+|+.||||.-|.+++..+||+||+| |.+..+..+.+....
T Consensus 308 vV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 308 VVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred EEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 599999999999999999999999999999999999999 788888888887664
No 80
>PRK01172 ski2-like helicase; Provisional
Probab=98.70 E-value=2.1e-08 Score=86.69 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=42.5
Q ss_pred CeecccccccCCCCCccEEEEcCC---------CCCHHHHHHHhhccccCCC--cceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM---------PDDVENYVHRIGRTGRSGK--TGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl---------P~~~~~y~qr~GRagR~g~--~g~~i~~~~~~ 54 (138)
||||+++++|+|+|... ||.+|. |-++.+|.||+|||||.|. .|.++.+....
T Consensus 315 LvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 315 IVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred EEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 69999999999999864 555554 4578899999999999984 56787776544
No 81
>PRK14701 reverse gyrase; Provisional
Probab=98.55 E-value=2e-08 Score=93.71 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=45.5
Q ss_pred Ceec----ccccccCCCCC-ccEEEEcCCCC---CHHHHHHHh-------------hccccCCCcceEEEeee
Q psy7792 1 MVAT----DVASKGLDFEE-IKHVINYDMPD---DVENYVHRI-------------GRTGRSGKTGLATTFIN 52 (138)
Q Consensus 1 LvaT----~~~~~GiD~~~-V~~VI~~dlP~---~~~~y~qr~-------------GRagR~g~~g~~i~~~~ 52 (138)
|||| ++++||||+|+ |++|||||+|+ +++.|.|.. ||+||+|.++.+++.+.
T Consensus 382 LVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 382 LIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred EEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhH
Confidence 6999 58999999998 99999999999 999999987 99999998777764443
No 82
>KOG4150|consensus
Probab=98.52 E-value=1.3e-07 Score=80.22 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=54.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC-cHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN-DESVLLDLKH 65 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~-~~~~~~~l~~ 65 (138)
+|||++++.|||+...+.|++.++|-++..+.|..|||||..+++.++.++.... |..++..-..
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~ 652 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDK 652 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHH
Confidence 5899999999999999999999999999999999999999999999888775443 3333333333
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.44 E-value=4.2e-07 Score=81.87 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=44.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceE
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLA 47 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~ 47 (138)
|++|.+++.|||+..+++||+||+||||..+.|++||+-|.|+...+
T Consensus 544 LLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V 590 (1033)
T PLN03142 544 LLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEV 590 (1033)
T ss_pred EEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceE
Confidence 68999999999999999999999999999999999999999986444
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.42 E-value=3.8e-07 Score=79.28 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=43.0
Q ss_pred CeecccccccCCCCCccEE--EEcCCCCC----------HHHHHHHhhccccCCCcceEEEee
Q psy7792 1 MVATDVASKGLDFEEIKHV--INYDMPDD----------VENYVHRIGRTGRSGKTGLATTFI 51 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~V--I~~dlP~~----------~~~y~qr~GRagR~g~~g~~i~~~ 51 (138)
||+|+++++|+|+|+|.+| ++.|.+-+ ...|+|++||+||.++.|.++..-
T Consensus 484 LVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT 546 (679)
T PRK05580 484 LIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQT 546 (679)
T ss_pred EEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEe
Confidence 6999999999999999998 45565543 367999999999999999988654
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=1.1e-06 Score=74.15 Aligned_cols=54 Identities=26% Similarity=0.474 Sum_probs=43.9
Q ss_pred CeecccccccCCCCCccEE--EEcCC----CC------CHHHHHHHhhccccCCCcceEEEe-eeCC
Q psy7792 1 MVATDVASKGLDFEEIKHV--INYDM----PD------DVENYVHRIGRTGRSGKTGLATTF-INKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~V--I~~dl----P~------~~~~y~qr~GRagR~g~~g~~i~~-~~~~ 54 (138)
||+|+.+++|+|+|+|.+| +++|. |+ ....|+|++||+||.++.|.++.. +++.
T Consensus 316 LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 316 LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred EEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 6999999999999999987 57775 43 257799999999999999988843 3443
No 86
>PRK09401 reverse gyrase; Reviewed
Probab=98.30 E-value=1.1e-06 Score=80.42 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=36.1
Q ss_pred Cee----cccccccCCCCC-ccEEEEcCCCC------CHHHHHHHhhccc
Q psy7792 1 MVA----TDVASKGLDFEE-IKHVINYDMPD------DVENYVHRIGRTG 39 (138)
Q Consensus 1 Lva----T~~~~~GiD~~~-V~~VI~~dlP~------~~~~y~qr~GRag 39 (138)
||+ ||+++||||+|+ |++|||||+|. ..+.|.||+||+-
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 578 799999999999 89999999999 7789999999995
No 87
>PRK09694 helicase Cas3; Provisional
Probab=98.09 E-value=1.4e-05 Score=71.27 Aligned_cols=40 Identities=33% Similarity=0.545 Sum_probs=36.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGK 43 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~ 43 (138)
||||+++++|||+ +++++|....| +++|+||+||++|.+.
T Consensus 625 LVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 625 LVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 6999999999999 68999998888 6799999999999876
No 88
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.03 E-value=2.3e-06 Score=76.06 Aligned_cols=54 Identities=30% Similarity=0.596 Sum_probs=49.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCC-CHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD-DVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~-~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
+++|+++.-|||+.++..||++..|. +..++.||.||+||.++.+..+.++..+
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 58999999999999999999999999 8999999999999999877777777633
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.90 E-value=1.4e-05 Score=72.92 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=39.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRS 41 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~ 41 (138)
||+++.+..|+|+|.|.+||.+++|.|...|+|++||+.|.
T Consensus 760 lVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 760 VVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred EEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 58899999999999999999999999999999999999995
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.79 E-value=3.4e-05 Score=64.06 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=38.4
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhcccc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGR 40 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR 40 (138)
||++.++.+|+|+|+++.+|......++..|+||+||.=|
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 5788999999999999999999999999999999999999
No 91
>KOG0947|consensus
Probab=97.63 E-value=7.1e-05 Score=66.74 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=41.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCC---------CHHHHHHHhhccccCC--CcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD---------DVENYVHRIGRTGRSG--KTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~---------~~~~y~qr~GRagR~g--~~g~~i~~~~~~ 54 (138)
|+||..|+||++-|. ++||.-.+-+ .|..|+|..|||||.| ..|.+|.+....
T Consensus 660 LFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 660 LFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 689999999999998 5555445554 4889999999999988 467777766544
No 92
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.50 E-value=0.0001 Score=67.68 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=24.9
Q ss_pred Cee----cccccccCCCCC-ccEEEEcCCCCC
Q psy7792 1 MVA----TDVASKGLDFEE-IKHVINYDMPDD 27 (138)
Q Consensus 1 Lva----T~~~~~GiD~~~-V~~VI~~dlP~~ 27 (138)
||| ||+++||||+|+ |++|||||+|+.
T Consensus 379 LVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 379 LIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred EEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 578 599999999999 899999999986
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.49 E-value=0.00022 Score=61.64 Aligned_cols=106 Identities=20% Similarity=0.165 Sum_probs=71.3
Q ss_pred CeecccccccCCCCCccEEEEcCCC-CCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhccc--CcHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP-DDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR--IPPF 77 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP-~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~ 77 (138)
||||.+.+-|||+|+...+|..|.= -..+...|=.||+||.+.++.|++++.+......-..+.-+ ....+. +.+
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im-~~t~DGF~IAE- 614 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIM-RETTDGFVIAE- 614 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHH-HhcCCcceehh-
Confidence 7999999999999999998888754 36888999999999999999999999887423222222222 222211 111
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCcCCCCCcccccccchH
Q psy7792 78 LAELESETEKFLDLGGDERGCAYCGGLGHRITACPKLE 115 (138)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (138)
.. --+.-.||-.+-+..+..+.+..+..+-.
T Consensus 615 ------~D-LklRGpGe~lG~rQSG~~~f~~Adl~~D~ 645 (677)
T COG1200 615 ------ED-LKLRGPGELLGTRQSGLPEFRVADLVRDY 645 (677)
T ss_pred ------hh-HhccCCccccCCcccCCcceEEeeHHhhH
Confidence 00 01222366667777777777776664433
No 94
>KOG0953|consensus
Probab=97.45 E-value=0.00017 Score=61.22 Aligned_cols=52 Identities=33% Similarity=0.530 Sum_probs=41.6
Q ss_pred CeecccccccCCCCCccEEEEcCCC---------CCHHHHHHHhhccccCCC---cceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP---------DDVENYVHRIGRTGRSGK---TGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP---------~~~~~y~qr~GRagR~g~---~g~~i~~~~~ 53 (138)
|||||+.+||+++ +++.||-|++- -....-.|=.|||||.|. .|.+.++...
T Consensus 413 lVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 413 LVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred EEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 6999999999997 77888888764 346778899999999885 4777776543
No 95
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.42 E-value=0.0011 Score=59.14 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=48.1
Q ss_pred eecccccccCCCCCcc--------EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 2 VATDVASKGLDFEEIK--------HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~--------~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
|||+.+|||.||.--. +||....|.|..-=-|-.||+||-|.+|.+..|++-.+
T Consensus 479 IATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 479 IATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred EecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 8999999999997333 89999999998777899999999999999999998763
No 96
>KOG0948|consensus
Probab=97.41 E-value=9e-05 Score=64.78 Aligned_cols=58 Identities=26% Similarity=0.471 Sum_probs=42.5
Q ss_pred CeecccccccCCCCCccEEEE----cCCCC----CHHHHHHHhhccccCCC--cceEEEeeeCCCcHH
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YDMPD----DVENYVHRIGRTGRSGK--TGLATTFINKSNDES 58 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~dlP~----~~~~y~qr~GRagR~g~--~g~~i~~~~~~~~~~ 58 (138)
|+||..|++|++-|.-..|+- ||=-. +--.|||..|||||.|. .|.+|+.++..-+..
T Consensus 476 LFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~ 543 (1041)
T KOG0948|consen 476 LFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQ 543 (1041)
T ss_pred HHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHH
Confidence 679999999999998554442 22111 45689999999999884 688999887554333
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.40 E-value=0.0002 Score=65.00 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=47.1
Q ss_pred CeecccccccCCCCCccEEEEcCCC-CCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP-DDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP-~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||-..+-|||+|+++.+|-.+.= -.++..+|=.||+||..+.+.|++++.+.
T Consensus 859 Lv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 859 LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred EEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 6999999999999999998776543 35889999999999999999999998753
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.33 E-value=0.0012 Score=58.72 Aligned_cols=55 Identities=25% Similarity=0.398 Sum_probs=48.9
Q ss_pred CeecccccccCCCCCc--------------------------------------cEEEEcCCCCCHHHHHHHhhccccCC
Q psy7792 1 MVATDVASKGLDFEEI--------------------------------------KHVINYDMPDDVENYVHRIGRTGRSG 42 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V--------------------------------------~~VI~~dlP~~~~~y~qr~GRagR~g 42 (138)
+||||+++||+|++-= =+||--..|.|..-=-|=.||+||-|
T Consensus 482 tIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQG 561 (830)
T PRK12904 482 TIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQG 561 (830)
T ss_pred EEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCC
Confidence 5999999999999742 27898889999888899999999999
Q ss_pred CcceEEEeeeCCC
Q psy7792 43 KTGLATTFINKSN 55 (138)
Q Consensus 43 ~~g~~i~~~~~~~ 55 (138)
.+|.+..|++-++
T Consensus 562 dpGss~f~lSleD 574 (830)
T PRK12904 562 DPGSSRFYLSLED 574 (830)
T ss_pred CCCceeEEEEcCc
Confidence 9999999999874
No 99
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.00072 Score=57.36 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=44.2
Q ss_pred CeecccccccCCCCCccEEEEcC-----CCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD-----MPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d-----lP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||--+.+-+|||+|.|.+|..+| +..+-.+.||-+|||+|. -.|.+|+|...-
T Consensus 500 LVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 500 LVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred EEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhh
Confidence 35557788999999999999987 556889999999999996 458999997643
No 100
>KOG0390|consensus
Probab=96.92 E-value=0.00097 Score=58.75 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=45.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEe
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTF 50 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~ 50 (138)
|.+|-|.+.||++-..+.||.||++|||+.=.|.++||-|+|++-.++.|
T Consensus 652 LlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 652 LLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 46788999999999999999999999999999999999999987655554
No 101
>KOG0950|consensus
Probab=96.91 E-value=0.0014 Score=58.48 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=47.7
Q ss_pred CeecccccccCCCCCccEEEEcCC----CCCHHHHHHHhhccccCCC--cceEEEeeeCCCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM----PDDVENYVHRIGRTGRSGK--TGLATTFINKSNDESVLL 61 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl----P~~~~~y~qr~GRagR~g~--~g~~i~~~~~~~~~~~~~ 61 (138)
++||+.++-|++.|..+++|-.-. +.+--.|.|++|||||.|- .|.+|+++.+. +...+.
T Consensus 552 l~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~-e~~~~~ 617 (1008)
T KOG0950|consen 552 LVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSS-EKKRVR 617 (1008)
T ss_pred EEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeecc-chhHHH
Confidence 579999999999999998887521 2356789999999999984 68899999887 443333
No 102
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.88 E-value=0.0012 Score=58.53 Aligned_cols=54 Identities=26% Similarity=0.438 Sum_probs=42.8
Q ss_pred CeecccccccCCCCCccEEEE----cC-----CCCCHHHHHHHhhccccCC--CcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YD-----MPDDVENYVHRIGRTGRSG--KTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~d-----lP~~~~~y~qr~GRagR~g--~~g~~i~~~~~~ 54 (138)
||||+.++.|+++|.=+.||- || .+-++-.|+|..|||||.| ..|.++.+.+..
T Consensus 344 lv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 344 LVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred EEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 689999999999998665553 66 5667889999999999988 456677666444
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.81 E-value=0.011 Score=53.32 Aligned_cols=54 Identities=30% Similarity=0.358 Sum_probs=48.5
Q ss_pred eecccccccCCCC---Ccc-----EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 2 VATDVASKGLDFE---EIK-----HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 2 vaT~~~~~GiD~~---~V~-----~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
|||+.++||.||. .|. +||--..|.|..---|=.||+||-|.+|.+..|++-.+
T Consensus 621 IATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 621 VATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred EeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 8999999999985 233 79999999999999999999999999999999998864
No 104
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.79 E-value=0.0014 Score=57.43 Aligned_cols=54 Identities=28% Similarity=0.422 Sum_probs=48.1
Q ss_pred eecccccccCCCCC----------cc-----EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 2 VATDVASKGLDFEE----------IK-----HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 2 vaT~~~~~GiD~~~----------V~-----~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
|||+.++||.||.- |. +||--..|.|..-=-|=.||+||-|.+|.+..|++-++
T Consensus 480 IATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 480 VSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred EEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 89999999999962 22 79999999999888999999999999999999998763
No 105
>KOG0926|consensus
Probab=96.74 E-value=0.00057 Score=60.40 Aligned_cols=53 Identities=32% Similarity=0.516 Sum_probs=42.5
Q ss_pred CeecccccccCCCCCccEEEEcCCC--------CCHHHH----------HHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP--------DDVENY----------VHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP--------~~~~~y----------~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
+|||++++--|-||+|++||..+-- ..+++| -||.|||||.| +|+|+=+|+..
T Consensus 634 VVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 634 VVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred EEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 5899999999999999999975433 333333 69999999986 58999988754
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=96.74 E-value=0.0041 Score=55.71 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=47.4
Q ss_pred CeecccccccCCCCC--------------------------------cc-----EEEEcCCCCCHHHHHHHhhccccCCC
Q psy7792 1 MVATDVASKGLDFEE--------------------------------IK-----HVINYDMPDDVENYVHRIGRTGRSGK 43 (138)
Q Consensus 1 LvaT~~~~~GiD~~~--------------------------------V~-----~VI~~dlP~~~~~y~qr~GRagR~g~ 43 (138)
+|||+.++||+|+.= |. +||--..|.|..-=-|=.||+||-|.
T Consensus 501 tIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGD 580 (908)
T PRK13107 501 TIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGD 580 (908)
T ss_pred EEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCC
Confidence 599999999999962 21 68888888887777899999999999
Q ss_pred cceEEEeeeCCC
Q psy7792 44 TGLATTFINKSN 55 (138)
Q Consensus 44 ~g~~i~~~~~~~ 55 (138)
+|.+..|++-++
T Consensus 581 PGss~f~lSlED 592 (908)
T PRK13107 581 AGSSRFYLSMED 592 (908)
T ss_pred CCceeEEEEeCc
Confidence 999999999864
No 107
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.74 E-value=0.0044 Score=55.51 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=46.5
Q ss_pred CeecccccccCCCCC---------------------------------cc-----EEEEcCCCCCHHHHHHHhhccccCC
Q psy7792 1 MVATDVASKGLDFEE---------------------------------IK-----HVINYDMPDDVENYVHRIGRTGRSG 42 (138)
Q Consensus 1 LvaT~~~~~GiD~~~---------------------------------V~-----~VI~~dlP~~~~~y~qr~GRagR~g 42 (138)
+||||+++||+|+.= |. +||--..+.|..-=-|=.||+||-|
T Consensus 496 tIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQG 575 (896)
T PRK13104 496 TIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQG 575 (896)
T ss_pred EEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCC
Confidence 599999999999962 11 6777778888777788999999999
Q ss_pred CcceEEEeeeCCC
Q psy7792 43 KTGLATTFINKSN 55 (138)
Q Consensus 43 ~~g~~i~~~~~~~ 55 (138)
.+|.+-.|++-++
T Consensus 576 DPGss~f~lSleD 588 (896)
T PRK13104 576 DPGSSRFYLSLED 588 (896)
T ss_pred CCCceEEEEEcCc
Confidence 9999999998764
No 108
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.0035 Score=56.89 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=41.4
Q ss_pred CeecccccccCCCCCccEEEEcCCC---------CCHHHHHHHhhccccCCC--cceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP---------DDVENYVHRIGRTGRSGK--TGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP---------~~~~~y~qr~GRagR~g~--~g~~i~~~~~~~ 55 (138)
|+||.++++||+.|. +.|+...+- -++..|+|..|||||.|. .|.+|+...+..
T Consensus 474 vFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 474 VFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred EeehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 579999999999997 444444433 368899999999999885 588888755443
No 109
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=96.35 E-value=0.0015 Score=56.07 Aligned_cols=54 Identities=20% Similarity=0.425 Sum_probs=42.3
Q ss_pred CeecccccccCCCCCccEEEE---cCCCC-CHHHHHHHhhccccCC--CcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN---YDMPD-DVENYVHRIGRTGRSG--KTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~---~dlP~-~~~~y~qr~GRagR~g--~~g~~i~~~~~~ 54 (138)
+|+|-+++-|+|+|.-..|+- .+.-| ++..|.|..|||||.+ ..|.+++++.+.
T Consensus 494 VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 494 VVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred EeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 488999999999998664432 23333 7899999999999988 468888888764
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.33 E-value=0.0046 Score=54.53 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=40.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCC--CcceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSG--KTGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g--~~g~~i~~~~~ 53 (138)
+|||.+.+-|+|+. .+++|- =|..+.+.+||.||.+|.| ..|.++.+...
T Consensus 498 vVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 498 VVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred EEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 58999999999985 677665 4677889999999999999 56777776543
No 111
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.32 E-value=0.007 Score=54.99 Aligned_cols=54 Identities=26% Similarity=0.487 Sum_probs=48.4
Q ss_pred eecccccccCCCC---Ccc-----EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 2 VATDVASKGLDFE---EIK-----HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 2 vaT~~~~~GiD~~---~V~-----~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
|||+.+|||-||. .|. +||--..|.|..---|=.||+||-|.+|.+..|++-.+
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 8999999999996 332 78998999999999999999999999999999998764
No 112
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.23 E-value=0.024 Score=50.94 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=47.0
Q ss_pred eecccccccCCCC--------------------------------Ccc-----EEEEcCCCCCHHHHHHHhhccccCCCc
Q psy7792 2 VATDVASKGLDFE--------------------------------EIK-----HVINYDMPDDVENYVHRIGRTGRSGKT 44 (138)
Q Consensus 2 vaT~~~~~GiD~~--------------------------------~V~-----~VI~~dlP~~~~~y~qr~GRagR~g~~ 44 (138)
|||+.+|||-||. .|. +||--..|.|..-=-|=.||+||-|.+
T Consensus 502 IATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDP 581 (913)
T PRK13103 502 IATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDP 581 (913)
T ss_pred EeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCC
Confidence 8999999999994 122 688888999988888999999999999
Q ss_pred ceEEEeeeCCC
Q psy7792 45 GLATTFINKSN 55 (138)
Q Consensus 45 g~~i~~~~~~~ 55 (138)
|.+-.|++-++
T Consensus 582 GsS~f~lSlED 592 (913)
T PRK13103 582 GSSRFYLSLED 592 (913)
T ss_pred CceEEEEEcCc
Confidence 99999999864
No 113
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.018 Score=46.83 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=39.1
Q ss_pred CeecccccccCCCCCccEE-EEcCCC-CCHHHHHHHhhccccCCC-cceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHV-INYDMP-DDVENYVHRIGRTGRSGK-TGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~V-I~~dlP-~~~~~y~qr~GRagR~g~-~g~~i~~~~~~ 54 (138)
||+|.+++||+-+|+|+.+ +.-.-+ -+-++.+|-.||+||.-. +.--+.|+...
T Consensus 359 LiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 359 LITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred EEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 6899999999999999974 444433 467889999999998543 33334444443
No 114
>KOG0387|consensus
Probab=96.10 E-value=0.0045 Score=54.63 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=45.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEe
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTF 50 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~ 50 (138)
|++|-|.+.|+++-..+-||.||+-|||++=.|..-||-|.|++-.+++|
T Consensus 603 LLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 603 LLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred EEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 67899999999999999999999999999999999999999987555554
No 115
>KOG0923|consensus
Probab=96.05 E-value=0.0046 Score=53.82 Aligned_cols=51 Identities=29% Similarity=0.470 Sum_probs=42.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCC------------------CHHHHHHHhhccccCCCcceEEEeee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD------------------DVENYVHRIGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~------------------~~~~y~qr~GRagR~g~~g~~i~~~~ 52 (138)
++||++++--|-|++|.+||.=++.+ +-++=.||.|||||.| +|.|+=+|+
T Consensus 536 VLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 536 VLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred EEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 47999999999999999999654433 4556689999999986 589999987
No 116
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.0041 Score=55.54 Aligned_cols=53 Identities=26% Similarity=0.470 Sum_probs=44.6
Q ss_pred CeecccccccCCCCCccEEEEcCCC------------------CCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP------------------DDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP------------------~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
++||++++-+|-|++|++||.-++- -+-++-.||.|||||-+ +|.|+=+|+..
T Consensus 317 VlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 317 VLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred EEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHH
Confidence 5899999999999999999976543 34677899999999974 69999999753
No 117
>KOG0924|consensus
Probab=95.83 E-value=0.0045 Score=54.13 Aligned_cols=52 Identities=33% Similarity=0.523 Sum_probs=43.6
Q ss_pred CeecccccccCCCCCccEEEEcC------------------CCCCHHHHHHHhhccccCCCcceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD------------------MPDDVENYVHRIGRTGRSGKTGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d------------------lP~~~~~y~qr~GRagR~g~~g~~i~~~~~ 53 (138)
+|||++++--|-++.+.+||..+ .|-+-++=-||.|||||.| +|.|+-+|+.
T Consensus 627 IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 627 IVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred EEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 58999999999999999999865 3445566689999999976 5899998875
No 118
>KOG0385|consensus
Probab=95.64 E-value=0.03 Score=49.58 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=45.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEe
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTF 50 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~ 50 (138)
|++|=|.|-||++...+.||.||--|||..=+|..-||-|.|+...+++|
T Consensus 544 lLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 544 LLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred EEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 58999999999999999999999999999999999999999987665554
No 119
>KOG0922|consensus
Probab=95.55 E-value=0.0091 Score=51.69 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=44.7
Q ss_pred CeecccccccCCCCCccEEEEcC------------------CCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD------------------MPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d------------------lP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
++||++++--|-|+.|.+||.-+ .|-|-++=.||.|||||.| +|.++=+|+.+
T Consensus 320 IlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~ 390 (674)
T KOG0922|consen 320 ILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTES 390 (674)
T ss_pred EEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHH
Confidence 58999999999999999998654 2456778899999999975 59999999865
No 120
>KOG0384|consensus
Probab=95.40 E-value=0.017 Score=53.18 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=44.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEE
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~ 49 (138)
|++|=|.|.||++...+.||.||--|||..=+|...||-|.|++..+-+
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 6899999999999999999999999999999999999999998654433
No 121
>KOG0920|consensus
Probab=95.31 E-value=0.012 Score=53.02 Aligned_cols=53 Identities=25% Similarity=0.455 Sum_probs=42.6
Q ss_pred CeecccccccCCCCCccEEEEcC--------CCCC----------HHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD--------MPDD----------VENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d--------lP~~----------~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
++||+.++-.|-|+||-+||... +-.+ -..=.||.|||||. .+|.|+-+|+..
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 57999999999999999999754 3322 33447999999997 569999999765
No 122
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.15 E-value=0.04 Score=48.47 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=43.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEE
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~ 49 (138)
|++|-+.+.|++....++||+||+.|++....|...|+-|.|++..+-.
T Consensus 767 lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 767 LLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred EEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEE
Confidence 4678899999999999999999999999999999999999987644333
No 123
>KOG0949|consensus
Probab=94.79 E-value=0.055 Score=49.21 Aligned_cols=67 Identities=28% Similarity=0.283 Sum_probs=43.8
Q ss_pred CeecccccccCCCCCccEEEEcC-CCCCHHHHHHHhhccccCCC--cceEEEeeeCCCcHHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD-MPDDVENYVHRIGRTGRSGK--TGLATTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d-lP~~~~~y~qr~GRagR~g~--~g~~i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
|+||..++.||+-|--..|+--| +--++-.|-|..|||||.|- .|.++.+=-| ...+.+-+...+..
T Consensus 992 lfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP--~~kv~rLlts~L~d 1061 (1330)
T KOG0949|consen 992 LFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP--RQKVQRLLTSLLPD 1061 (1330)
T ss_pred EEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCc--HHHHHHHHHHhhhc
Confidence 58999999999987544444444 44578999999999999884 3554444323 33444444444433
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.68 E-value=0.067 Score=47.32 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=38.8
Q ss_pred CeecccccccCCCCCccEEEEcC------CCC------CHHHHHHHhhccccCCCcceEEEe
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD------MPD------DVENYVHRIGRTGRSGKTGLATTF 50 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d------lP~------~~~~y~qr~GRagR~g~~g~~i~~ 50 (138)
||-|...+.|.|+|+|..|.-.| .|+ ...-+.|=.|||||.+++|.++.-
T Consensus 538 LiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 538 LIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred eecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 57899999999999999865444 222 255678999999999888777664
No 125
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.38 E-value=0.14 Score=40.40 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=47.1
Q ss_pred CeecccccccCCCCC--------ccEEEEcCCCCCHHHHHHHhhccccCCCcce-EEEeeeCC--CcHHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEE--------IKHVINYDMPDDVENYVHRIGRTGRSGKTGL-ATTFINKS--NDESVLLDLKHLLLE 69 (138)
Q Consensus 1 LvaT~~~~~GiD~~~--------V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~-~i~~~~~~--~~~~~~~~l~~~~~~ 69 (138)
+|.|++++-||-+.+ -+.-|...+||+...-+|-.||+-|.++..- .+.++... .+..+...+.+.+..
T Consensus 65 ~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~va~rL~s 144 (278)
T PF13871_consen 65 AIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFASTVARRLES 144 (278)
T ss_pred EEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 367888998987763 2355678999999999999999999997433 23333322 144555555555544
No 126
>KOG1000|consensus
Probab=93.89 E-value=0.054 Score=46.08 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=50.7
Q ss_pred eecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceE-EEe--eeCCCcHHHHHHHHHHHHHh
Q psy7792 2 VATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLA-TTF--INKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~-i~~--~~~~~~~~~~~~l~~~~~~~ 70 (138)
++-.++++||++...+.|+...+||||.-.+|.=-|+-|.|+++.+ |.| .....|+.++..+.+.+...
T Consensus 549 lsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 549 LSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred EEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999988888888865433 333 33444667777666655443
No 127
>COG4889 Predicted helicase [General function prediction only]
Probab=93.76 E-value=0.078 Score=48.03 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=38.8
Q ss_pred ccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCC---CcceEEEeee
Q psy7792 7 ASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSG---KTGLATTFIN 52 (138)
Q Consensus 7 ~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g---~~g~~i~~~~ 52 (138)
+++|+|+|..+.||.||+-.++-..+|.+||+-|-. +-|..|+-+.
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 678999999999999999999999999999998733 3477776553
No 128
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.55 E-value=0.06 Score=48.32 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=38.1
Q ss_pred CeecccccccCCCCCcc--EEEEcCCCC----CH--------------------------HHHHHHhhccccCCCcceEE
Q psy7792 1 MVATDVASKGLDFEEIK--HVINYDMPD----DV--------------------------ENYVHRIGRTGRSGKTGLAT 48 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~--~VI~~dlP~----~~--------------------------~~y~qr~GRagR~g~~g~~i 48 (138)
|++|+.+.+|||+++.. .||-..+|- ++ ..+.|-+||.-|..+..-++
T Consensus 729 Llgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 729 LLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred EEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 68999999999999766 566667663 11 22467889998877655566
Q ss_pred EeeeCC
Q psy7792 49 TFINKS 54 (138)
Q Consensus 49 ~~~~~~ 54 (138)
.+++..
T Consensus 809 ~ilD~R 814 (850)
T TIGR01407 809 VILDRR 814 (850)
T ss_pred EEEccc
Confidence 666554
No 129
>KOG1015|consensus
Probab=93.20 E-value=0.049 Score=49.56 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=44.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEE
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~ 49 (138)
||+|-+.+.||++-..+.||.||..|||.-=+|.+=|+-|.|+.--++.
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 6899999999999999999999999999999999999999997654444
No 130
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=91.91 E-value=0.3 Score=43.84 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=33.4
Q ss_pred eecccccccCCCCC----------------------c----------cEEEEcCCCCCHHHHHH--HhhccccCCCcceE
Q psy7792 2 VATDVASKGLDFEE----------------------I----------KHVINYDMPDDVENYVH--RIGRTGRSGKTGLA 47 (138)
Q Consensus 2 vaT~~~~~GiD~~~----------------------V----------~~VI~~dlP~~~~~y~q--r~GRagR~g~~g~~ 47 (138)
|+|.+...|+|++. + ++||.|++=.+.-.-+| |.||.||. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 56888889999997 6 89999996555555555 66666665 445
Q ss_pred EEee
Q psy7792 48 TTFI 51 (138)
Q Consensus 48 i~~~ 51 (138)
+.++
T Consensus 508 yfL~ 511 (814)
T TIGR00596 508 YFLY 511 (814)
T ss_pred EEEE
Confidence 4444
No 131
>KOG0388|consensus
Probab=91.67 E-value=0.16 Score=45.08 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=42.4
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceE
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLA 47 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~ 47 (138)
|++|-+.+.||++...+.||.||--|+|..=.|...||-|-|+.-.+
T Consensus 1099 LLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1099 LLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred EEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 57899999999999999999999999999999999999999975443
No 132
>KOG0951|consensus
Probab=91.56 E-value=0.19 Score=46.99 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=38.8
Q ss_pred CeecccccccCCCCCccEEEE----cCCC------CCHHHHHHHhhccccCC--CcceEEEeee
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YDMP------DDVENYVHRIGRTGRSG--KTGLATTFIN 52 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~dlP------~~~~~y~qr~GRagR~g--~~g~~i~~~~ 52 (138)
||+|-.++.|+++|.-..+|- ||+- -++-.-+|+.|||||.+ ..|..|..-.
T Consensus 637 lvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 637 LVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred EEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 689999999999999666663 5543 35889999999999866 3455555433
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=91.26 E-value=1.4 Score=39.86 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.6
Q ss_pred HHHhhccccCCCcceEEEeeeCCC
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
-|=.||+||-|.+|.+-.|++-++
T Consensus 609 nQLrGRaGRQGDPG~s~f~lSLED 632 (870)
T CHL00122 609 NQLRGRAGRQGDPGSSRFFLSLED 632 (870)
T ss_pred HHHhccccCCCCCCcceEEEEecc
Confidence 356789999999999999998764
No 134
>KOG0389|consensus
Probab=90.94 E-value=0.41 Score=42.81 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=42.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCC--cceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGK--TGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~--~g~~i~~~~~~ 54 (138)
|++|-+.|-||++-..+.||.||+.-||-.=.|.--|+-|.|+ +-.++-+++..
T Consensus 833 LLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 833 LLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred EEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 5789999999999999999999999887666666666666664 34455567665
No 135
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=89.62 E-value=0.29 Score=45.02 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=33.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGK 43 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~ 43 (138)
+|+|.+.+-|+|+ |.+++|- -|..+.+.+|+.||..|.|.
T Consensus 842 ~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 842 VLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 5899999999997 4566654 47899999999999998775
No 136
>KOG0701|consensus
Probab=89.44 E-value=0.12 Score=49.11 Aligned_cols=42 Identities=29% Similarity=0.546 Sum_probs=38.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSG 42 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g 42 (138)
|++|.++..|+|++.++.|+.++.|....+|+|+.||+-..+
T Consensus 358 L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 358 LIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred HHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 578999999999999999999999999999999999995543
No 137
>KOG0925|consensus
Probab=89.20 E-value=0.32 Score=41.48 Aligned_cols=53 Identities=26% Similarity=0.457 Sum_probs=42.8
Q ss_pred CeecccccccCCCCCccEEEEcCC------------------CCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM------------------PDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl------------------P~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
+|+|+.++--+-++.|.+||.-++ |-+-.+=.||.|||||. ++|.+.-+|+.+
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 478999999999999999997654 44566778999999885 678999998754
No 138
>KOG0952|consensus
Probab=88.91 E-value=2.6 Score=39.02 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=38.2
Q ss_pred CeecccccccCCCCCccEEEEcCCC-----C------CHHHHHHHhhccccCC--CcceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP-----D------DVENYVHRIGRTGRSG--KTGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP-----~------~~~~y~qr~GRagR~g--~~g~~i~~~~~ 53 (138)
|+||..++=|+++|+ .+||..+-+ + ..-.-+|-.|||||.+ ..|.+|.+-+.
T Consensus 426 L~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~ 490 (1230)
T KOG0952|consen 426 LCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTR 490 (1230)
T ss_pred EEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecc
Confidence 689999999999998 455554433 2 2456799999999965 56777766543
No 139
>KOG0386|consensus
Probab=88.89 E-value=0.76 Score=42.08 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=45.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFI 51 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~ 51 (138)
|.+|-+.+.|++++..+.||.||--|+|....|+--||-|.|+.-.+-++.
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 568899999999999999999999999999999999999999765555544
No 140
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=88.80 E-value=1.1 Score=39.41 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=33.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRS 41 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~ 41 (138)
||+++.+..|.|.|.++.++-.-+-.+. .++|.+||+-|.
T Consensus 595 lIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 595 LIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 5788999999999999988876655554 689999999993
No 141
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=88.77 E-value=0.74 Score=33.09 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=32.1
Q ss_pred Ceecc--cccccCCCCC--ccEEEEcCCCC-CHH--------H---------------------HHHHhhccccCCCcce
Q psy7792 1 MVATD--VASKGLDFEE--IKHVINYDMPD-DVE--------N---------------------YVHRIGRTGRSGKTGL 46 (138)
Q Consensus 1 LvaT~--~~~~GiD~~~--V~~VI~~dlP~-~~~--------~---------------------y~qr~GRagR~g~~g~ 46 (138)
|+++. .+.+|||+++ ++.||-..+|- ++. . ..|-+||+-|..+.--
T Consensus 63 l~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g 142 (167)
T PF13307_consen 63 LLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYG 142 (167)
T ss_dssp EEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EE
T ss_pred EEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcE
Confidence 45666 7899999994 78899999883 211 1 1467999988887766
Q ss_pred EEEeeeCC
Q psy7792 47 ATTFINKS 54 (138)
Q Consensus 47 ~i~~~~~~ 54 (138)
++.++++.
T Consensus 143 ~i~llD~R 150 (167)
T PF13307_consen 143 VIILLDSR 150 (167)
T ss_dssp EEEEESGG
T ss_pred EEEEEcCc
Confidence 66666554
No 142
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=88.03 E-value=1.3 Score=31.27 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred CeecccccccCCCCC--ccEEEEcCCCC
Q psy7792 1 MVATDVASKGLDFEE--IKHVINYDMPD 26 (138)
Q Consensus 1 LvaT~~~~~GiD~~~--V~~VI~~dlP~ 26 (138)
|++|.-+.+|||+++ ++.||-..+|-
T Consensus 52 L~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 52 LLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEccceecceecCCCCeeEEEEEecCC
Confidence 467777999999985 57898888883
No 143
>KOG0392|consensus
Probab=87.46 E-value=0.63 Score=43.54 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=44.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFI 51 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~ 51 (138)
|.+|-+.|-|+++-..+.||.++--|||..=.|.+-||-|.|++ ..+++|
T Consensus 1399 lLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK-rvVNVy 1448 (1549)
T KOG0392|consen 1399 LLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK-RVVNVY 1448 (1549)
T ss_pred EEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc-eeeeee
Confidence 47899999999999999999999999999999999999999986 344443
No 144
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=86.00 E-value=1.9 Score=30.40 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=19.2
Q ss_pred eeccc--ccccCCCCC--ccEEEEcCCC
Q psy7792 2 VATDV--ASKGLDFEE--IKHVINYDMP 25 (138)
Q Consensus 2 vaT~~--~~~GiD~~~--V~~VI~~dlP 25 (138)
+++.- +.+|||+++ ++.||-..+|
T Consensus 52 ~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 52 LAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred EEEeCCeeecceecCCCccEEEEEEecC
Confidence 45555 899999985 6789998888
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.93 E-value=2.3 Score=36.92 Aligned_cols=54 Identities=22% Similarity=0.315 Sum_probs=39.5
Q ss_pred CeecccccccCCCC--CccEEEEcCCCCC------------------------------HHHHHHHhhccccCCCcceEE
Q psy7792 1 MVATDVASKGLDFE--EIKHVINYDMPDD------------------------------VENYVHRIGRTGRSGKTGLAT 48 (138)
Q Consensus 1 LvaT~~~~~GiD~~--~V~~VI~~dlP~~------------------------------~~~y~qr~GRagR~g~~g~~i 48 (138)
+|+|..+.+|+|++ ..+.||...+|-- +....|-+||+=|.-...-++
T Consensus 532 lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 532 LVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 58999999999998 5578888887742 334578899998866555555
Q ss_pred EeeeCC
Q psy7792 49 TFINKS 54 (138)
Q Consensus 49 ~~~~~~ 54 (138)
.++...
T Consensus 612 vllD~R 617 (654)
T COG1199 612 VLLDKR 617 (654)
T ss_pred EEeccc
Confidence 555543
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=82.31 E-value=4.4 Score=37.05 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=36.8
Q ss_pred CeecccccccCCCCC--ccEEEEcCCCC-CH-----------------------------HHHHHHhhccccCCCcceEE
Q psy7792 1 MVATDVASKGLDFEE--IKHVINYDMPD-DV-----------------------------ENYVHRIGRTGRSGKTGLAT 48 (138)
Q Consensus 1 LvaT~~~~~GiD~~~--V~~VI~~dlP~-~~-----------------------------~~y~qr~GRagR~g~~g~~i 48 (138)
|++|..|.+|||+|. ++.||-..+|- +| -.+.|-+||.=|....--++
T Consensus 808 LlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 808 LLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred EEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE
Confidence 578899999999994 57888877764 11 11256678887777554456
Q ss_pred EeeeCC
Q psy7792 49 TFINKS 54 (138)
Q Consensus 49 ~~~~~~ 54 (138)
.++++.
T Consensus 888 ~ilD~R 893 (928)
T PRK08074 888 FVLDRR 893 (928)
T ss_pred EEecCc
Confidence 666554
No 147
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=81.26 E-value=1 Score=40.45 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=35.3
Q ss_pred eecccccccCCCCCccEEEEcCCCCCHHHHHHHhhcccc
Q psy7792 2 VATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGR 40 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR 40 (138)
|+.+.+.-|||+|.|..++-+-.-.|...|-|.+||.=|
T Consensus 486 itvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 486 ITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred EehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 556788889999999999999999999999999999866
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=75.49 E-value=5.9 Score=35.07 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.2
Q ss_pred CeecccccccCCCCC--ccEEEEcCCC
Q psy7792 1 MVATDVASKGLDFEE--IKHVINYDMP 25 (138)
Q Consensus 1 LvaT~~~~~GiD~~~--V~~VI~~dlP 25 (138)
|++|..|.+|||+|+ +++||...+|
T Consensus 589 L~g~~sf~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 589 LFGLQSFAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred EEEeccccccccCCCCceEEEEEEcCC
Confidence 578899999999984 7889888877
No 149
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=72.75 E-value=14 Score=33.35 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=34.9
Q ss_pred CeecccccccCCCC--CccEEEEcCCC----CC--------------------------HHHHHHHhhccccCCCcceEE
Q psy7792 1 MVATDVASKGLDFE--EIKHVINYDMP----DD--------------------------VENYVHRIGRTGRSGKTGLAT 48 (138)
Q Consensus 1 LvaT~~~~~GiD~~--~V~~VI~~dlP----~~--------------------------~~~y~qr~GRagR~g~~g~~i 48 (138)
|++|..|.+|+|+| +...||-..+| .+ .-.+.|-+||.=|....--++
T Consensus 698 LlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv 777 (820)
T PRK07246 698 LLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV 777 (820)
T ss_pred EEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE
Confidence 57899999999996 45556666666 22 112356778888876543355
Q ss_pred EeeeCC
Q psy7792 49 TFINKS 54 (138)
Q Consensus 49 ~~~~~~ 54 (138)
.++++.
T Consensus 778 ~ilD~R 783 (820)
T PRK07246 778 LILDRR 783 (820)
T ss_pred EEECCc
Confidence 565544
No 150
>KOG1513|consensus
Probab=70.19 E-value=7.2 Score=35.61 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=42.1
Q ss_pred ecccccccCCCCCcc--------EEEEcCCCCCHHHHHHHhhccccCCCcc--eEEEeee-CCCcHHHHHHHHHHHHH
Q psy7792 3 ATDVASKGLDFEEIK--------HVINYDMPDDVENYVHRIGRTGRSGKTG--LATTFIN-KSNDESVLLDLKHLLLE 69 (138)
Q Consensus 3 aT~~~~~GiD~~~V~--------~VI~~dlP~~~~~y~qr~GRagR~g~~g--~~i~~~~-~~~~~~~~~~l~~~~~~ 69 (138)
-+.+++-||-++.=+ .=|-+.|||+...=||.-||+-|..+.+ .-+.+++ -..+.++...+.+-+..
T Consensus 863 ISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRFAS~VAKRLES 940 (1300)
T KOG1513|consen 863 ISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRFASIVAKRLES 940 (1300)
T ss_pred eehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHHHHHHHHHHHh
Confidence 455677788776433 3355789999999999999999987632 2222333 23344555555555443
No 151
>PRK09401 reverse gyrase; Reviewed
Probab=67.87 E-value=11 Score=35.64 Aligned_cols=41 Identities=37% Similarity=0.585 Sum_probs=29.3
Q ss_pred CCHHHHHHHhhccccC--C--CcceEEEeeeCCCcHHHHHHHHHHHHH
Q psy7792 26 DDVENYVHRIGRTGRS--G--KTGLATTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 26 ~~~~~y~qr~GRagR~--g--~~g~~i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
.++.+|+|-+||+.|. | .+|.+++++. +...+..+.+.+.-
T Consensus 517 pd~~tYiqasGRtSrl~~gg~t~glsv~l~d---d~~~~~~l~~~~~~ 561 (1176)
T PRK09401 517 PDVTTYIQASGRTSRLYAGGLTKGLSVLLVD---DEKLFESLKKKLRW 561 (1176)
T ss_pred cCcchheecccchhcccCCCccceeEEEEec---CHHHHHHHHHHHHH
Confidence 5677899999999983 3 3688888874 55566666665553
No 152
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=67.63 E-value=5.5 Score=36.02 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=35.4
Q ss_pred eecccccccCCCCCcc-----------EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 2 VATDVASKGLDFEEIK-----------HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~-----------~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
|||+.++||-|+.--. +||--.--.+-.==-|=.||+||-|.+|.+..|++-.
T Consensus 482 iATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 482 IATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred cccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 7999999999996222 2333222111111126679999999999999888765
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.27 E-value=11 Score=33.39 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=35.9
Q ss_pred ccccccCCCCC--ccEEEEcCCCC-CH------------------------------HHHHHHhhccccCCCcceEEEee
Q psy7792 5 DVASKGLDFEE--IKHVINYDMPD-DV------------------------------ENYVHRIGRTGRSGKTGLATTFI 51 (138)
Q Consensus 5 ~~~~~GiD~~~--V~~VI~~dlP~-~~------------------------------~~y~qr~GRagR~g~~g~~i~~~ 51 (138)
.-+++|||+++ ++.||-..+|- ++ ....|-+||+=|..+.--+|.++
T Consensus 592 Gk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 592 GKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred CcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 56889999984 78999999985 21 11257788888877665566666
Q ss_pred eCC
Q psy7792 52 NKS 54 (138)
Q Consensus 52 ~~~ 54 (138)
+..
T Consensus 672 D~R 674 (705)
T TIGR00604 672 DKR 674 (705)
T ss_pred ehh
Confidence 544
No 154
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=62.85 E-value=18 Score=27.69 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=42.9
Q ss_pred cccccccCCCCCccEEEEcCCCCCHHHHHHHhhccc-cCCCcceEEEeeeCC
Q psy7792 4 TDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTG-RSGKTGLATTFINKS 54 (138)
Q Consensus 4 T~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRag-R~g~~g~~i~~~~~~ 54 (138)
=+.++||+-++........--|++..++.|+.=+-| |.|-...+-+|.++.
T Consensus 142 Gn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~ 193 (239)
T PF10593_consen 142 GNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEE 193 (239)
T ss_pred CccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHH
Confidence 357889999999988888888999999999998888 888677787777554
No 155
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=59.60 E-value=33 Score=31.85 Aligned_cols=70 Identities=9% Similarity=0.139 Sum_probs=51.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccC---------CCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRS---------GKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~---------g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
|++-.++.+|-|-|+|=.+..+.-..+.-.-.|.+||.-|. ....+.++++.......+...|.+..+..
T Consensus 505 ifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI~~~ 583 (986)
T PRK15483 505 LFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEINSD 583 (986)
T ss_pred EEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHHHhh
Confidence 35667889999999999999999888888899999998552 22234556665554677777777666554
No 156
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=58.42 E-value=10 Score=35.31 Aligned_cols=41 Identities=32% Similarity=0.571 Sum_probs=29.5
Q ss_pred CCCHHHHHHHhhcccc--CC--CcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 25 PDDVENYVHRIGRTGR--SG--KTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 25 P~~~~~y~qr~GRagR--~g--~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
-.++.+|+|-+||+.| +| ..|.++.++. +...+..+.+.+.
T Consensus 526 vPD~~TYIQaSGRtSRLyaGglTkGlSvvlvd---d~~~f~~L~krm~ 570 (1187)
T COG1110 526 VPDVRTYIQASGRTSRLYAGGLTKGLSVVLVD---DPEVFEGLIKRMS 570 (1187)
T ss_pred ecChhhheeccchHhhhhccccccceEEEEec---CHHHHHHHHHHHH
Confidence 3578899999999998 33 3678888874 4456666666654
No 157
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=57.97 E-value=47 Score=29.37 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.8
Q ss_pred CeecccccccCCC----------CCccEEEEcCCC
Q psy7792 1 MVATDVASKGLDF----------EEIKHVINYDMP 25 (138)
Q Consensus 1 LvaT~~~~~GiD~----------~~V~~VI~~dlP 25 (138)
|++|+.|-+|||+ ..+..||...+|
T Consensus 526 L~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 526 LIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred EEeCCccccccccCCccCCCCCCCcccEEEEEeCC
Confidence 5789999999999 358899998888
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=56.57 E-value=20 Score=31.68 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=34.1
Q ss_pred CeecccccccCCCCCccEEEEcC------CCC------CHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD------MPD------DVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d------lP~------~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||.|..+..-+. +++..|+..| .|+ ...-+.|-.||+||.++.|.++....+.
T Consensus 475 lVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 475 VVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred EEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 577873222222 4677766555 332 2455688999999999899988875443
No 159
>KOG0391|consensus
Probab=55.41 E-value=27 Score=33.51 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=35.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHH------HHHHHhhccccCCCcceEEEeee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVE------NYVHRIGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~------~y~qr~GRagR~g~~g~~i~~~~ 52 (138)
|++|-..+-||++-..+.||.||--||+. ...||||++ |+ -+.+=|++
T Consensus 1332 ILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt-RD---VHIYRLIS 1385 (1958)
T KOG0391|consen 1332 ILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT-RD---VHIYRLIS 1385 (1958)
T ss_pred EEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc-cc---eEEEEeec
Confidence 35677788999999999999999988854 567788777 43 23444554
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=51.92 E-value=41 Score=28.41 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=33.1
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhccccCCC------cceEEEeeeCC
Q psy7792 11 LDFEEIKHVINYDMPDDVENYVHRIGRTGRSGK------TGLATTFINKS 54 (138)
Q Consensus 11 iD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~------~g~~i~~~~~~ 54 (138)
..+..|+.||-|.+|..+.=|-.-+.-.+.... ...++++|+.-
T Consensus 366 y~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 366 YRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred ceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 456789999999999999988776655543332 46788888876
No 161
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=50.74 E-value=10 Score=35.70 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=28.3
Q ss_pred CCHHHHHHHhhcccc--CC--CcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 26 DDVENYVHRIGRTGR--SG--KTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 26 ~~~~~y~qr~GRagR--~g--~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
.++.+|+|-+||+.| +| .+|.+++++. +...+..+.+.+.
T Consensus 515 pd~~tyiqasgrtsr~~~g~~t~gls~~~~~---~~~~~~~l~~~~~ 558 (1171)
T TIGR01054 515 PDARTYIQASGRTSRLYAGGLTKGLSIVLVD---DPEAFEALKKRLK 558 (1171)
T ss_pred cCccceeEccChhhhcccCCcCCceEEEEec---CHHHHHHHHHHHh
Confidence 567789999999998 33 4688888875 4455555555544
No 162
>KOG4439|consensus
Probab=49.56 E-value=18 Score=32.51 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=40.0
Q ss_pred eecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEE
Q psy7792 2 VATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~ 49 (138)
++=.+.+-||++-..+|+|..|+=|||.-=-|.+-|.-|.|++-.++.
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 344567789999999999999999999999999999999997644443
No 163
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=48.95 E-value=18 Score=16.29 Aligned_cols=17 Identities=47% Similarity=1.036 Sum_probs=13.9
Q ss_pred CCCcCCCCCcccccccc
Q psy7792 97 GCAYCGGLGHRITACPK 113 (138)
Q Consensus 97 ~~~~~~~~~~~~~~~~~ 113 (138)
.|-.|+..||...+|++
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 47889999999888853
No 164
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=48.86 E-value=1.2e+02 Score=28.17 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=48.0
Q ss_pred eecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCC--CcceE----------EEeeeCCCcHHHHHHHHHHHHH
Q psy7792 2 VATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSG--KTGLA----------TTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g--~~g~~----------i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
.+--++-+|-|=|+|=.++-.....|..+=.|++||.=|.- +.|.- ++++.+..+..++..|.+..+.
T Consensus 488 FS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~LqkEI~~ 567 (985)
T COG3587 488 FSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQKEIND 567 (985)
T ss_pred eehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHHHHHHH
Confidence 34456779999999999999999999999999999987632 22222 2344444466677766665543
No 165
>PRK14701 reverse gyrase; Provisional
Probab=44.40 E-value=16 Score=35.64 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=28.1
Q ss_pred CCHHHHHHHhhcccc--CC--CcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 26 DDVENYVHRIGRTGR--SG--KTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 26 ~~~~~y~qr~GRagR--~g--~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
.++.+|+|-+||+.| +| .+|.+++++. +...+..+.+.+.
T Consensus 494 pd~~tyiqasgrtsrl~~gg~tkgls~~~~d---~~~~~~~l~~~~~ 537 (1638)
T PRK14701 494 PDVRTYIQASGRTSRLFAGGITKGASVLIVD---DPEIFNALIRQMR 537 (1638)
T ss_pred cCcccceeccchhhhccCCCcCCceEEEEec---CHHHHHHHHHHHh
Confidence 567789999999998 33 4688888875 4455555555444
No 166
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=43.70 E-value=14 Score=33.91 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.1
Q ss_pred HHhhccccCCCcceEEEeeeCCC
Q psy7792 33 HRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 33 qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
|=.||+||-|.+|.+..|++-++
T Consensus 667 QLRGRaGRQGDPGsSrFflSLED 689 (939)
T PRK12902 667 QLRGRAGRQGDPGSTRFFLSLED 689 (939)
T ss_pred HhhcccccCCCCCcceEEEEech
Confidence 55689999999999999998764
No 167
>PLN02390 molybdopterin synthase catalytic subunit
Probab=42.05 E-value=35 Score=23.14 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=28.8
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 77 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 77 (138)
+||+|+. ..|.....+...++. ....+......+...+.+.|=|
T Consensus 58 ~HR~G~l-~vge~~v~v~v~s~H-R~~Af~A~~~~id~lK~~vPIW 101 (111)
T PLN02390 58 AHRLGPV-PVGETSVFVAVSSVH-RADALDACKFLIDELKASVPIW 101 (111)
T ss_pred EEeeecc-cCCCEEEEEEEECCC-HHHHHHHHHHHHHHHhhcCCEE
Confidence 5777776 566766666666666 5555666666666666666654
No 168
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=36.94 E-value=20 Score=33.46 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=19.2
Q ss_pred ccccccCCCC-CccEEEEcCCCC
Q psy7792 5 DVASKGLDFE-EIKHVINYDMPD 26 (138)
Q Consensus 5 ~~~~~GiD~~-~V~~VI~~dlP~ 26 (138)
.++-||||+| .++++|.|++|+
T Consensus 395 G~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 395 GVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cceeecCCchhheeEEEEecCCc
Confidence 3677999999 788999999995
No 169
>PHA03371 circ protein; Provisional
Probab=36.62 E-value=31 Score=26.58 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=30.1
Q ss_pred cccccCCCCCccEE-EEcCCCC-------------CHHHHHHHhhccccCCCcceEEEeee
Q psy7792 6 VASKGLDFEEIKHV-INYDMPD-------------DVENYVHRIGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 6 ~~~~GiD~~~V~~V-I~~dlP~-------------~~~~y~qr~GRagR~g~~g~~i~~~~ 52 (138)
+++|-||+|.=+-+ |-.|.+. +--.|+|.||||--.|..-.-+.|..
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl~ 89 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYLS 89 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEEc
Confidence 46788999976655 5334333 45578999999966665444444443
No 170
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=34.07 E-value=48 Score=22.79 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=25.2
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
+||+|+. ..|.....|...++. ....+......+...+.+.|=
T Consensus 69 ~HR~G~l-~vGe~~v~i~v~a~h-R~~af~A~~~~id~lK~~~Pi 111 (124)
T cd00756 69 IHRVGRL-PPGEAIVLVAVSSPH-RKEAFEACEFLIDRLKHRAPI 111 (124)
T ss_pred EEEEccc-CCCCEEEEEEEecCC-HHHHHHHHHHHHHHHHhhCCE
Confidence 4666665 556655555555555 555566666666666655554
No 171
>KOG1016|consensus
Probab=32.27 E-value=63 Score=29.88 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=43.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEe
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTF 50 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~ 50 (138)
|++|-+...||++-..+-+|-||.-|++--=.|.+-|+-|.|++--+++|
T Consensus 794 llstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 794 LLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred eehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 46788888999998888999999999999889999999999987666665
No 172
>KOG2281|consensus
Probab=30.76 E-value=23 Score=31.61 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=36.9
Q ss_pred eecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEE
Q psy7792 2 VATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATT 49 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~ 49 (138)
+.+|+.+++.|++.-+.|+-+..+..--.||-|+|++ ++|+-.++..
T Consensus 330 ~~~~~~gk~~~v~~kdlv~~~~~~f~~~EYI~Ragwt-pdgkyvwvq~ 376 (867)
T KOG2281|consen 330 FENDAEGKIYDVPLKDLVQPFHCLFEDVEYIARAGWT-PDGKYVWVQV 376 (867)
T ss_pred Eeeccccceeccchhhcccccccccccceeeeecccc-CCCcEEEEEE
Confidence 4678889999999999999988887766898888888 6676544443
No 173
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=30.66 E-value=58 Score=23.30 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=29.9
Q ss_pred HHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHH
Q psy7792 31 YVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 77 (138)
Q Consensus 31 y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 77 (138)
.+||+|+. ..|...+.+...++. ....+......+...+.+.|=|
T Consensus 81 i~HriG~l-~~Ge~~v~v~v~s~H-R~~Af~a~~~~id~lK~~aPiW 125 (149)
T COG0314 81 IIHRIGEL-KIGEAIVLVGVASAH-RKEAFEACEYIIDRLKHRAPIW 125 (149)
T ss_pred EEEeeccc-cCCCcEEEEEEeccc-HHHHHHHHHHHHHHHHhhCCce
Confidence 46778877 666666666666665 5566666666776777666655
No 174
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=29.92 E-value=64 Score=23.09 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPF 77 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 77 (138)
+||+|+. ..|.....+...++. ....+......+...+.++|=|
T Consensus 82 ~HR~G~l-~~Ge~~v~Vav~s~H-R~~Af~A~~~~id~lK~~vPIW 125 (150)
T PRK10678 82 IHRVGEL-WPGDEIVFVGVTSAH-RSSAFEAGQFIMDYLKTRAPFW 125 (150)
T ss_pred EEeEecc-cCCCEEEEEEEECCC-HHHHHHHHHHHHHHHhhcCCeE
Confidence 5666666 456655555555555 4455555555666666666654
No 175
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=28.08 E-value=29 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.753 Sum_probs=19.4
Q ss_pred EEEcCCCCCHHHHHHHhhcccc
Q psy7792 19 VINYDMPDDVENYVHRIGRTGR 40 (138)
Q Consensus 19 VI~~dlP~~~~~y~qr~GRagR 40 (138)
..||.+|....+|+-.+-|+|.
T Consensus 97 M~Nf~iPa~LK~yiD~i~~aGk 118 (202)
T COG1182 97 MYNFNIPAQLKAYIDHIAVAGK 118 (202)
T ss_pred ccccCCCHHHHHHHHHHhcCCc
Confidence 4589999999999999999874
No 176
>KOG2340|consensus
Probab=26.97 E-value=1.7e+02 Score=25.80 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=31.9
Q ss_pred ccCCCCCccEEEEcCCCCCHHHH---HHHhhccccCC----CcceEEEeeeCC
Q psy7792 9 KGLDFEEIKHVINYDMPDDVENY---VHRIGRTGRSG----KTGLATTFINKS 54 (138)
Q Consensus 9 ~GiD~~~V~~VI~~dlP~~~~~y---~qr~GRagR~g----~~g~~i~~~~~~ 54 (138)
+--++..|+.||.|.+|.+|.=| +..++|+.-.| ....+..++++-
T Consensus 616 rR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 616 RRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred hhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 45678899999999999998766 44555554222 334566677765
No 177
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=25.05 E-value=32 Score=18.13 Aligned_cols=20 Identities=40% Similarity=0.853 Sum_probs=16.3
Q ss_pred CCCCCCcCCCCCcccccccc
Q psy7792 94 DERGCAYCGGLGHRITACPK 113 (138)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~ 113 (138)
+.--|..|...||.+.+|+.
T Consensus 7 ~~Y~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 7 PGYVCHRCGQKGHWIQDCPT 26 (32)
T ss_pred CCCEeecCCCCCccHhHCCC
Confidence 34568999999999999864
No 178
>KOG1002|consensus
Probab=24.60 E-value=1.4e+02 Score=26.25 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=36.0
Q ss_pred eecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCC--cceEEEee
Q psy7792 2 VATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGK--TGLATTFI 51 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~--~g~~i~~~ 51 (138)
|+-.+.+-.+++-....|+..|+=|++.--.|.--|.-|.|+ +-.++.|+
T Consensus 695 vSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~ 746 (791)
T KOG1002|consen 695 VSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFC 746 (791)
T ss_pred EEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEee
Confidence 444566667888889999999999999877776666666664 44555554
No 179
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=23.32 E-value=1.7e+02 Score=22.76 Aligned_cols=43 Identities=23% Similarity=0.453 Sum_probs=29.7
Q ss_pred cccCCCCCcc--EEEEcCCCCCHHHHHHH--------------------hhccccCCCcceEEEeee
Q psy7792 8 SKGLDFEEIK--HVINYDMPDDVENYVHR--------------------IGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 8 ~~GiD~~~V~--~VI~~dlP~~~~~y~qr--------------------~GRagR~g~~g~~i~~~~ 52 (138)
.-|||-+++. +|+. +|.+|..--.+ .||+.|.|..|.+|-+..
T Consensus 104 nAGID~SN~~~g~v~L--LP~DPd~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~~gvAIG~aG 168 (243)
T TIGR01916 104 NAGIDESNVGNGELLL--LPEDPDASAEKIRRGLRELTGVDVGVIITDTNGRPFREGQVGVAIGAAG 168 (243)
T ss_pred ccccccccCCCCeEEe--cCCChHHHHHHHHHHHHHHHCCCEEEEEECCCCCccccCCCCeeeeccC
Confidence 3499999885 4444 68876544332 357888888888888764
No 180
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=23.18 E-value=39 Score=19.14 Aligned_cols=18 Identities=50% Similarity=1.062 Sum_probs=14.1
Q ss_pred CCCCcCCCCCcccccccc
Q psy7792 96 RGCAYCGGLGHRITACPK 113 (138)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~ 113 (138)
.-|..|+..+|...+|++
T Consensus 32 ~~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 32 RFCFHCGRIGHSDKECPK 49 (49)
T ss_pred hhhcCCCCcCcCHhHcCC
Confidence 358889999998888753
No 181
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=22.48 E-value=92 Score=17.38 Aligned_cols=20 Identities=35% Similarity=0.828 Sum_probs=15.9
Q ss_pred CCCCCCcCCCCCcccccccc
Q psy7792 94 DERGCAYCGGLGHRITACPK 113 (138)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~ 113 (138)
....|..|+..||..-+|+.
T Consensus 3 ~~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 3 ARVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCCcCcccCCCCcchhhCCC
Confidence 34579999999999888864
No 182
>KOG0298|consensus
Probab=21.49 E-value=40 Score=32.22 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=37.6
Q ss_pred eecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCc
Q psy7792 2 VATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKT 44 (138)
Q Consensus 2 vaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~ 44 (138)
+-+...+-|+++-...+|+..++=-++..=.|-+||.-|.|+.
T Consensus 1272 l~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1272 LFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred EEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccc
Confidence 3445567899999999999999999999999999999999974
No 183
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=20.68 E-value=2.1e+02 Score=17.37 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEcCCCCCHHHHHHHhhccccCCC
Q psy7792 20 INYDMPDDVENYVHRIGRTGRSGK 43 (138)
Q Consensus 20 I~~dlP~~~~~y~qr~GRagR~g~ 43 (138)
.++.+|...+.|++..-..||.++
T Consensus 2 ~~isL~~~~~~~i~~~V~sG~Y~s 25 (69)
T TIGR02606 2 TSVSLGEHLESFIRSQVQSGRYGS 25 (69)
T ss_pred ceeecCHHHHHHHHHHHHCCCCCC
Confidence 367899999999999999999765
No 184
>KOG0336|consensus
Probab=20.09 E-value=92 Score=26.61 Aligned_cols=40 Identities=28% Similarity=0.244 Sum_probs=16.4
Q ss_pred HhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhccc
Q psy7792 34 RIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR 73 (138)
Q Consensus 34 r~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 73 (138)
|.|||||-|..-..++--....-......+++..+...++
T Consensus 555 rtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPde 594 (629)
T KOG0336|consen 555 RTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDE 594 (629)
T ss_pred ccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHH
Confidence 4455555444444444333333333333333333333333
No 185
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=20.09 E-value=95 Score=17.31 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHhcccCcHHH
Q psy7792 56 DESVLLDLKHLLLEARQRIPPFL 78 (138)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~~~l 78 (138)
+.-+-+.+.+++.+..+..|+||
T Consensus 19 dT~v~r~l~~yY~~k~~~~P~WL 41 (41)
T PF14475_consen 19 DTHVHRVLRKYYTEKGRPFPGWL 41 (41)
T ss_pred hhHHHHHHHHHHHHcCCCCCCcC
Confidence 55567788889998888888875
No 186
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=20.06 E-value=1.7e+02 Score=20.37 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=21.9
Q ss_pred CCHHHHHHHhhcccc----CCCcceEEEeeeCC
Q psy7792 26 DDVENYVHRIGRTGR----SGKTGLATTFINKS 54 (138)
Q Consensus 26 ~~~~~y~qr~GRagR----~g~~g~~i~~~~~~ 54 (138)
.++..|++-.||.|- ....|+-|.++..+
T Consensus 62 ~sLT~FvkyLgr~G~~~Vdetekg~~I~yID~~ 94 (127)
T PF10357_consen 62 TSLTEFVKYLGREGKCKVDETEKGWFISYIDRS 94 (127)
T ss_dssp SSHHHHHHHHTTTTSEEEEEETTEEEEEE--SS
T ss_pred chHHHHHHHHhhCCeeEeecCCCceEEEeeCCC
Confidence 379999999999983 22569999999886
No 187
>KOG1133|consensus
Probab=20.06 E-value=1.8e+02 Score=26.34 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=35.3
Q ss_pred ccccCCCCC--ccEEEEcCCCCC--------------------------------HHHHHHHhhccccCCCcceEEEeee
Q psy7792 7 ASKGLDFEE--IKHVINYDMPDD--------------------------------VENYVHRIGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 7 ~~~GiD~~~--V~~VI~~dlP~~--------------------------------~~~y~qr~GRagR~g~~g~~i~~~~ 52 (138)
+++||++.| .+.||-.++|-- +..--|.+|||-|-.+.--+|.+++
T Consensus 699 lSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 699 LSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 468999974 678999888832 1123478999999888878888875
Q ss_pred CC
Q psy7792 53 KS 54 (138)
Q Consensus 53 ~~ 54 (138)
..
T Consensus 779 ~R 780 (821)
T KOG1133|consen 779 KR 780 (821)
T ss_pred hh
Confidence 54
Done!