Query psy7792
Match_columns 138
No_of_seqs 176 out of 1648
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 18:58:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6n_A ATP-dependent RNA helic 99.8 5.6E-21 1.9E-25 140.1 7.6 81 1-81 108-188 (191)
2 2db3_A ATP-dependent RNA helic 99.8 9.2E-21 3.1E-25 153.5 7.2 80 1-80 354-433 (434)
3 2jgn_A DBX, DDX3, ATP-dependen 99.8 3E-20 1E-24 135.4 8.1 81 1-82 100-180 (185)
4 1t5i_A C_terminal domain of A 99.8 3.4E-20 1.2E-24 133.5 4.3 78 1-78 85-162 (172)
5 2hjv_A ATP-dependent RNA helic 99.8 2.8E-19 9.5E-24 127.4 6.7 67 1-68 89-155 (163)
6 1oyw_A RECQ helicase, ATP-depe 99.8 2.4E-19 8.1E-24 148.9 6.2 54 1-54 290-343 (523)
7 3eaq_A Heat resistant RNA depe 99.8 3.2E-19 1.1E-23 132.4 6.3 72 1-73 85-156 (212)
8 1fuk_A Eukaryotic initiation f 99.8 4.1E-19 1.4E-23 126.6 4.2 75 1-76 84-158 (165)
9 2rb4_A ATP-dependent RNA helic 99.8 8.2E-19 2.8E-23 126.1 5.6 70 1-71 88-163 (175)
10 2i4i_A ATP-dependent RNA helic 99.7 1.8E-18 6E-23 137.3 7.3 81 1-82 330-410 (417)
11 3i32_A Heat resistant RNA depe 99.7 3E-18 1E-22 133.9 5.9 69 1-70 82-150 (300)
12 2v1x_A ATP-dependent DNA helic 99.7 1.5E-18 5.1E-23 146.2 3.8 54 1-54 321-374 (591)
13 2yjt_D ATP-dependent RNA helic 99.5 1E-18 3.4E-23 125.3 0.0 69 1-70 84-152 (170)
14 3eiq_A Eukaryotic initiation f 99.7 8E-18 2.7E-22 133.2 3.6 80 1-81 334-413 (414)
15 2j0s_A ATP-dependent RNA helic 99.7 1.8E-17 6.1E-22 131.6 5.5 75 1-76 330-404 (410)
16 3i5x_A ATP-dependent RNA helic 99.7 7.1E-17 2.4E-21 133.6 7.5 66 1-67 396-461 (563)
17 3sqw_A ATP-dependent RNA helic 99.7 7.8E-17 2.7E-21 134.5 7.5 65 1-66 345-409 (579)
18 1xti_A Probable ATP-dependent 99.7 4.8E-17 1.6E-21 127.9 4.9 76 1-76 304-379 (391)
19 3pey_A ATP-dependent RNA helic 99.7 9.1E-17 3.1E-21 125.9 6.2 68 1-68 297-370 (395)
20 1s2m_A Putative ATP-dependent 99.7 9.7E-17 3.3E-21 126.8 6.2 75 1-76 312-386 (400)
21 3fht_A ATP-dependent RNA helic 99.6 1.1E-16 3.8E-21 126.4 5.4 76 1-76 320-401 (412)
22 1hv8_A Putative ATP-dependent 99.6 2.9E-16 1E-20 121.9 6.1 69 1-70 292-360 (367)
23 2z0m_A 337AA long hypothetical 99.6 2.6E-16 9E-21 121.0 5.6 66 1-68 270-335 (337)
24 1fuu_A Yeast initiation factor 99.6 5.6E-17 1.9E-21 127.4 0.0 77 1-78 313-389 (394)
25 3fmp_B ATP-dependent RNA helic 99.6 5.9E-17 2E-21 131.9 0.0 76 1-76 387-468 (479)
26 3oiy_A Reverse gyrase helicase 99.6 9.7E-16 3.3E-20 122.3 7.0 65 1-68 301-376 (414)
27 2ykg_A Probable ATP-dependent 99.6 2.5E-15 8.5E-20 127.0 6.5 52 1-54 465-516 (696)
28 4gl2_A Interferon-induced heli 99.5 9.5E-15 3.2E-19 123.5 8.7 50 1-53 468-517 (699)
29 1tf5_A Preprotein translocase 99.5 3.7E-15 1.3E-19 129.2 5.8 56 1-56 484-547 (844)
30 3fho_A ATP-dependent RNA helic 99.5 1.7E-15 5.7E-20 125.0 2.4 76 1-76 411-492 (508)
31 4a2p_A RIG-I, retinoic acid in 99.5 4.5E-15 1.5E-19 121.4 4.8 53 1-55 457-509 (556)
32 3tbk_A RIG-I helicase domain; 99.5 1.9E-15 6.6E-20 123.2 2.0 52 1-54 456-507 (555)
33 1yks_A Genome polyprotein [con 99.5 1.4E-14 4.9E-19 117.8 5.6 73 1-74 227-321 (440)
34 3jux_A Protein translocase sub 99.5 2.7E-14 9.1E-19 122.6 6.3 55 1-55 526-588 (822)
35 2whx_A Serine protease/ntpase/ 99.5 2.6E-14 8.9E-19 121.0 5.4 67 1-69 405-495 (618)
36 1wp9_A ATP-dependent RNA helic 99.5 5.7E-14 1.9E-18 111.6 6.0 54 1-55 423-476 (494)
37 2z83_A Helicase/nucleoside tri 99.4 6.3E-14 2.1E-18 114.5 5.8 53 1-54 240-313 (459)
38 4a2q_A RIG-I, retinoic acid in 99.4 5E-14 1.7E-18 121.6 5.1 52 1-54 698-749 (797)
39 4a2w_A RIG-I, retinoic acid in 99.4 1.1E-13 3.6E-18 121.8 6.5 53 1-55 698-750 (936)
40 3o8b_A HCV NS3 protease/helica 99.4 7.6E-14 2.6E-18 119.0 4.7 52 1-55 443-515 (666)
41 2wv9_A Flavivirin protease NS2 99.4 1.3E-13 4.6E-18 117.7 6.1 66 1-67 460-548 (673)
42 2jlq_A Serine protease subunit 99.4 1.1E-13 3.7E-18 112.7 5.2 52 1-53 238-310 (451)
43 2d7d_A Uvrabc system protein B 99.4 4.1E-13 1.4E-17 114.4 7.7 59 1-61 499-562 (661)
44 2fsf_A Preprotein translocase 99.4 2.5E-13 8.7E-18 117.8 5.9 55 1-55 493-584 (853)
45 1c4o_A DNA nucleotide excision 99.4 5.2E-13 1.8E-17 113.8 7.2 61 1-63 493-558 (664)
46 1gku_B Reverse gyrase, TOP-RG; 99.4 4.1E-13 1.4E-17 119.4 6.8 68 1-69 323-468 (1054)
47 4ddu_A Reverse gyrase; topoiso 99.4 7.2E-13 2.5E-17 118.3 8.3 66 1-69 358-504 (1104)
48 1nkt_A Preprotein translocase 99.4 1E-12 3.6E-17 114.4 7.8 39 17-55 580-618 (922)
49 1z5z_A Helicase of the SNF2/RA 99.3 3.7E-13 1.3E-17 103.4 3.5 54 1-54 169-224 (271)
50 3dmq_A RNA polymerase-associat 99.3 3.6E-12 1.2E-16 112.5 8.1 51 1-51 560-610 (968)
51 1gm5_A RECG; helicase, replica 99.3 2.4E-12 8.1E-17 111.6 6.5 54 1-54 643-697 (780)
52 2xgj_A ATP-dependent RNA helic 99.3 3.2E-12 1.1E-16 113.3 6.2 60 1-60 436-505 (1010)
53 3l9o_A ATP-dependent RNA helic 99.3 3.1E-12 1.1E-16 114.3 5.8 60 1-60 534-603 (1108)
54 2fwr_A DNA repair protein RAD2 99.3 5.6E-12 1.9E-16 102.1 6.3 54 1-54 398-454 (472)
55 3rc3_A ATP-dependent RNA helic 99.3 4.6E-12 1.6E-16 108.3 5.7 50 1-51 376-442 (677)
56 2xau_A PRE-mRNA-splicing facto 99.3 1.7E-12 5.8E-17 112.3 3.1 53 1-54 373-443 (773)
57 2v6i_A RNA helicase; membrane, 99.2 6.5E-12 2.2E-16 101.8 4.8 50 1-51 221-288 (431)
58 2oca_A DAR protein, ATP-depend 99.2 3.4E-12 1.2E-16 104.3 2.0 52 1-52 401-453 (510)
59 2va8_A SSO2462, SKI2-type heli 99.2 1.2E-11 4.2E-16 105.3 4.5 55 1-55 342-409 (715)
60 2zj8_A DNA helicase, putative 99.2 1.8E-11 6E-16 104.5 5.2 55 1-55 324-388 (720)
61 2p6r_A Afuhel308 helicase; pro 99.1 2.2E-11 7.4E-16 103.7 4.5 54 1-54 326-388 (702)
62 1z63_A Helicase of the SNF2/RA 99.1 4.1E-11 1.4E-15 97.7 4.4 54 1-54 398-453 (500)
63 3h1t_A Type I site-specific re 99.1 5.7E-11 1.9E-15 99.0 4.4 43 1-43 503-545 (590)
64 4a4z_A Antiviral helicase SKI2 99.1 1.2E-10 4.1E-15 103.2 5.9 51 1-52 429-490 (997)
65 2eyq_A TRCF, transcription-rep 99.1 1.1E-10 3.7E-15 104.8 5.3 54 1-54 868-922 (1151)
66 1z3i_X Similar to RAD54-like; 99.0 5.6E-10 1.9E-14 94.6 8.4 54 1-54 473-528 (644)
67 3mwy_W Chromo domain-containin 98.8 2.4E-09 8.1E-14 92.7 5.7 54 1-54 629-684 (800)
68 4f92_B U5 small nuclear ribonu 98.8 4.3E-09 1.5E-13 97.5 4.8 54 1-54 1243-1308(1724)
69 4f92_B U5 small nuclear ribonu 98.6 2E-08 6.9E-13 93.1 3.4 55 1-55 408-474 (1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.5 1E-07 3.6E-12 84.8 4.4 52 1-53 653-708 (1038)
71 2vl7_A XPD; helicase, unknown 96.5 0.0017 5.8E-08 53.7 3.8 52 2-53 435-520 (540)
72 2ipc_A Preprotein translocase 95.3 0.029 9.9E-07 49.7 6.0 38 18-55 662-699 (997)
73 3hgt_A HDA1 complex subunit 3; 77.9 22 0.00077 27.6 9.7 51 4-54 177-237 (328)
74 4a15_A XPD helicase, ATP-depen 66.9 8.3 0.00028 32.2 5.2 54 1-54 498-584 (620)
75 3crv_A XPD/RAD3 related DNA he 32.9 17 0.00057 29.7 1.6 25 2-26 442-473 (551)
76 4ap8_A Molybdopterin synthase 26.8 39 0.0013 22.7 2.3 42 32-75 85-126 (135)
77 1fm0_E Molybdopterin convertin 26.6 41 0.0014 23.0 2.4 43 32-76 82-124 (150)
78 2omd_A Molybdopterin-convertin 25.7 44 0.0015 22.9 2.5 43 32-76 86-128 (154)
79 2wp4_A Molybdopterin-convertin 25.4 44 0.0015 22.8 2.4 43 32-76 88-130 (147)
80 1a6b_B Momulv, zinc finger pro 25.2 50 0.0017 17.3 2.1 21 94-114 9-29 (40)
81 1u6p_A GAG polyprotein; MLV, A 24.8 44 0.0015 19.0 2.0 21 94-114 22-42 (56)
82 2q5w_E Molybdopterin-convertin 24.7 46 0.0016 22.7 2.4 43 32-76 80-122 (149)
83 3rpf_A Molybdopterin synthase 21.9 54 0.0018 22.4 2.3 43 32-76 79-121 (148)
No 1
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=140.14 Aligned_cols=81 Identities=75% Similarity=1.168 Sum_probs=73.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||+++++|+|+|++++||+||+|++++.|+||+||+||.|+.|.+++|+++.++......+++.+....+.+|++|.+
T Consensus 108 LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 108 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHS
T ss_pred EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHh
Confidence 69999999999999999999999999999999999999999999999999998778888999999999999999998765
Q ss_pred H
Q psy7792 81 L 81 (138)
Q Consensus 81 ~ 81 (138)
+
T Consensus 188 ~ 188 (191)
T 2p6n_A 188 L 188 (191)
T ss_dssp T
T ss_pred h
Confidence 4
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.82 E-value=9.2e-21 Score=153.50 Aligned_cols=80 Identities=51% Similarity=0.908 Sum_probs=75.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++|+++.++......+.+.+....+++|++|.+
T Consensus 354 LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 69999999999999999999999999999999999999999999999999998778888999999999999999998754
No 3
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=135.43 Aligned_cols=81 Identities=53% Similarity=0.951 Sum_probs=69.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+....+.+|+++..
T Consensus 100 LvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l~~ 178 (185)
T 2jgn_A 100 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLLVEAKQEVPSWLEN 178 (185)
T ss_dssp EEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG-GGGGHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh-hHHHHHHHHHHHHhccCCCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999887 7778888999999999999998877
Q ss_pred HH
Q psy7792 81 LE 82 (138)
Q Consensus 81 ~~ 82 (138)
+.
T Consensus 179 ~a 180 (185)
T 2jgn_A 179 MA 180 (185)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=3.4e-20 Score=133.50 Aligned_cols=78 Identities=37% Similarity=0.724 Sum_probs=68.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFL 78 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 78 (138)
||||+++++|+|+|++++|||||+|++++.|+||+||+||.|+.|.+++|+++.++...+..+++.+.....++|..+
T Consensus 85 LvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 85 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred EEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 699999999999999999999999999999999999999999999999999887566777888877776666776653
No 5
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.78 E-value=2.8e-19 Score=127.37 Aligned_cols=67 Identities=48% Similarity=0.831 Sum_probs=60.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+++.+.
T Consensus 89 lv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 89 LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEEYIG 155 (163)
T ss_dssp EEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHHHHT
T ss_pred EEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHHHHC
Confidence 699999999999999999999999999999999999999999999999999887 6666666666553
No 6
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.77 E-value=2.4e-19 Score=148.86 Aligned_cols=54 Identities=30% Similarity=0.608 Sum_probs=52.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||++++||||+|+|++|||||+|+++++|+||+||+||+|.+|.+++|+++.
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 699999999999999999999999999999999999999999999999999876
No 7
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.77 E-value=3.2e-19 Score=132.39 Aligned_cols=72 Identities=36% Similarity=0.626 Sum_probs=62.4
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhccc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQR 73 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 73 (138)
||||+++++|||+|+|++|||||+|++++.|+||+||+||.|+.|.+++|+++. +...+..+++.+......
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRRFKR 156 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHSSCCEE
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhcCcCee
Confidence 699999999999999999999999999999999999999999999999999987 677777777766554443
No 8
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.75 E-value=4.1e-19 Score=126.62 Aligned_cols=75 Identities=36% Similarity=0.790 Sum_probs=60.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+++.+....+.+|.
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSSCCCEECCS
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHccCccccCc
Confidence 699999999999999999999999999999999999999999999999999987 666666676666555555544
No 9
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=8.2e-19 Score=126.11 Aligned_cols=70 Identities=37% Similarity=0.738 Sum_probs=56.9
Q ss_pred CeecccccccCCCCCccEEEEcCCC------CCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhc
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEAR 71 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP------~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~ 71 (138)
||||+++++|+|+|++++|||||+| .++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+....
T Consensus 88 LvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 88 LITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQDHFNSSI 163 (175)
T ss_dssp EEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHHHHTCCC
T ss_pred EEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHHHhcCcc
Confidence 6999999999999999999999999 99999999999999999999999999887 5555666655554333
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=137.32 Aligned_cols=81 Identities=53% Similarity=0.951 Sum_probs=73.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||+++++|+|+|+|++||+||+|.++..|+||+||+||.|+.|.+++|+++. +......+.+.+....+.+|.++..
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~ 408 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLLVEAKQEVPSWLEN 408 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGG-GGGGHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccc-cHHHHHHHHHHHHHhcCcCCHHHHH
Confidence 699999999999999999999999999999999999999999999999999887 7788888999999999999998877
Q ss_pred HH
Q psy7792 81 LE 82 (138)
Q Consensus 81 ~~ 82 (138)
+.
T Consensus 409 ~~ 410 (417)
T 2i4i_A 409 MA 410 (417)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 11
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.73 E-value=3e-18 Score=133.86 Aligned_cols=69 Identities=38% Similarity=0.646 Sum_probs=56.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
||||+++++|||+|+|++|||||+|+++++|+||+||+||.|+.|.+++|+++. +...+..+++.....
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRR 150 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHHHHTCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHHHhCCc
Confidence 699999999999999999999999999999999999999999999999999987 666666666655443
No 12
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.72 E-value=1.5e-18 Score=146.17 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=52.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||++++||||+|+|++|||||+|.++++|+||+|||||+|++|.+++|+++.
T Consensus 321 lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 699999999999999999999999999999999999999999999999999876
No 13
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.54 E-value=1e-18 Score=125.26 Aligned_cols=69 Identities=41% Similarity=0.772 Sum_probs=61.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++++. +...+..+++.+...
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKVGRYIEEP 152 (170)
Confidence 699999999999999999999999999999999999999999999999999876 566666666654433
No 14
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.69 E-value=8e-18 Score=133.24 Aligned_cols=80 Identities=36% Similarity=0.754 Sum_probs=61.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFLAE 80 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 80 (138)
||||+++++|+|+|+|++||+||+|.++..|+||+||+||.|+.|.+++|+++. +...+..+++++.....++|..+.+
T Consensus 334 lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 334 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTCCCEECCC----
T ss_pred EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcCCccccChhhhh
Confidence 699999999999999999999999999999999999999999999999999887 7788888888888888888776554
Q ss_pred H
Q psy7792 81 L 81 (138)
Q Consensus 81 ~ 81 (138)
+
T Consensus 413 l 413 (414)
T 3eiq_A 413 L 413 (414)
T ss_dssp -
T ss_pred c
Confidence 3
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.69 E-value=1.8e-17 Score=131.61 Aligned_cols=75 Identities=37% Similarity=0.771 Sum_probs=68.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
||||+++++|+|+|+|++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+++++.....++|.
T Consensus 330 lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 330 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND-DIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGG-GHHHHHHHHHHTTCCCEECCS
T ss_pred EEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHH-HHHHHHHHHHHhCCCceeccc
Confidence 699999999999999999999999999999999999999999999999999987 777888888877766666654
No 16
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.67 E-value=7.1e-17 Score=133.59 Aligned_cols=66 Identities=39% Similarity=0.759 Sum_probs=60.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLL 67 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~ 67 (138)
||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++|+++. +...++.++...
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~~~ 461 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELEDAK 461 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHHHH
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchh-HHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999987 666666665543
No 17
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=7.8e-17 Score=134.46 Aligned_cols=65 Identities=40% Similarity=0.781 Sum_probs=60.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHL 66 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~ 66 (138)
||||+++++|||+|+|++|||||+|.+++.|+||+||+||+|+.|.+++|+++. +..++..++..
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~~ 409 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELEDA 409 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHHH
T ss_pred EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEccc-HHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999987 66666666554
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.66 E-value=4.8e-17 Score=127.88 Aligned_cols=76 Identities=38% Similarity=0.748 Sum_probs=66.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.++..++..+++.+....+++|.
T Consensus 304 lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 304 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 6999999999999999999999999999999999999999999999999999876667777777766555555554
No 19
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.65 E-value=9.1e-17 Score=125.88 Aligned_cols=68 Identities=37% Similarity=0.782 Sum_probs=61.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCC------CHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~------~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
||||+++++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+++.++......+.+.+.
T Consensus 297 lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 297 LITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 69999999999999999999999999 999999999999999999999999988766666666666554
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.65 E-value=9.7e-17 Score=126.81 Aligned_cols=75 Identities=39% Similarity=0.703 Sum_probs=64.9
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+++.+....+.+|.
T Consensus 312 Lv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 312 LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCS
T ss_pred EEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCCcccccc
Confidence 699999999999999999999999999999999999999999999999999887 666666666665554444444
No 21
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.64 E-value=1.1e-16 Score=126.36 Aligned_cols=76 Identities=38% Similarity=0.724 Sum_probs=65.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCC------CHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRI 74 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~------~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 74 (138)
||||+++++|+|+|++++||+||+|+ +...|+||+||+||.|+.|.+++++++.++...+..+++.+......+
T Consensus 320 lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 320 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp EEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred EEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 69999999999999999999999994 678999999999999999999999988766777777777776655555
Q ss_pred cH
Q psy7792 75 PP 76 (138)
Q Consensus 75 ~~ 76 (138)
+.
T Consensus 400 ~~ 401 (412)
T 3fht_A 400 DT 401 (412)
T ss_dssp --
T ss_pred CC
Confidence 43
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.63 E-value=2.9e-16 Score=121.88 Aligned_cols=69 Identities=42% Similarity=0.756 Sum_probs=61.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHh
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEA 70 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~ 70 (138)
||||+++++|+|+|++++||++++|+++.+|+||+||+||.|++|.+++++++. +...+..+++.++..
T Consensus 292 lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 292 LIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR-EYKKLRYIERAMKLK 360 (367)
T ss_dssp EEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT-SHHHHHHHHHHHTCC
T ss_pred EEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHH-HHHHHHHHHHHhCCC
Confidence 689999999999999999999999999999999999999999999999999887 666666666655443
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.62 E-value=2.6e-16 Score=121.02 Aligned_cols=66 Identities=45% Similarity=0.779 Sum_probs=57.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+. . +......+++.++
T Consensus 270 lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~-~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 270 LITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-N-EYWLEKEVKKVSQ 335 (337)
T ss_dssp EEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-S-CHHHHHHHC----
T ss_pred EEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-C-cHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999998 4 6666766665543
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.60 E-value=5.6e-17 Score=127.43 Aligned_cols=77 Identities=35% Similarity=0.762 Sum_probs=0.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPPFL 78 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 78 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+++++......+|..+
T Consensus 313 lv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 313 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchh-HHHHHHHHHHHhCCcccccCcch
Confidence 699999999999999999999999999999999999999999999999999887 66677777777776666666543
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.60 E-value=5.9e-17 Score=131.86 Aligned_cols=76 Identities=38% Similarity=0.724 Sum_probs=0.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCC------CHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD------DVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRI 74 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~------~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 74 (138)
||||+++++|||+|+|++|||||+|. +...|+||+||+||.|+.|.+++|+++.++...+..+.+.+......+
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 79999999999999999999999995 568999999999999999999999998766777777777776655554
Q ss_pred cH
Q psy7792 75 PP 76 (138)
Q Consensus 75 ~~ 76 (138)
+.
T Consensus 467 ~~ 468 (479)
T 3fmp_B 467 DT 468 (479)
T ss_dssp --
T ss_pred CC
Confidence 43
No 26
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.60 E-value=9.7e-16 Score=122.31 Aligned_cols=65 Identities=34% Similarity=0.553 Sum_probs=58.8
Q ss_pred Cee----cccccccCCCCC-ccEEEEcCCC--CCHHHHHHHhhccccCC----CcceEEEeeeCCCcHHHHHHHHHHHH
Q psy7792 1 MVA----TDVASKGLDFEE-IKHVINYDMP--DDVENYVHRIGRTGRSG----KTGLATTFINKSNDESVLLDLKHLLL 68 (138)
Q Consensus 1 Lva----T~~~~~GiD~~~-V~~VI~~dlP--~~~~~y~qr~GRagR~g----~~g~~i~~~~~~~~~~~~~~l~~~~~ 68 (138)
||| |+++++|||+|+ |++|||||+| .++.+|+||+||+||.| +.|.+++|+ ++...+..+++.+.
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 588 999999999999 9999999999 99999999999999988 589999999 36777777777776
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.57 E-value=2.5e-15 Score=126.96 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=35.3
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|++|||||+|+++++|+||+|| ||. +.|.++.+++..
T Consensus 465 LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 465 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp SEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 7999999999999999999999999999999999999 998 778998888765
No 28
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.55 E-value=9.5e-15 Score=123.46 Aligned_cols=50 Identities=28% Similarity=0.427 Sum_probs=43.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~ 53 (138)
||||+++++|||+|+|++|||||+|+|++.|+||+|||||.| .+++++.+
T Consensus 468 LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 468 LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 799999999999999999999999999999999999987765 44444443
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.54 E-value=3.7e-15 Score=129.24 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=53.2
Q ss_pred CeecccccccCCCC--------CccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCCc
Q psy7792 1 MVATDVASKGLDFE--------EIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSND 56 (138)
Q Consensus 1 LvaT~~~~~GiD~~--------~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~ 56 (138)
|||||+++||+|++ ++.+|||||+|.+.+.|+||+||+||.|.+|.+++|++..++
T Consensus 484 lIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 484 TIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 59999999999999 788999999999999999999999999999999999998753
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.53 E-value=1.7e-15 Score=124.97 Aligned_cols=76 Identities=34% Similarity=0.728 Sum_probs=49.9
Q ss_pred CeecccccccCCCCCccEEEEcCCC------CCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP------DDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRI 74 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP------~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 74 (138)
||||+++++|+|+|+|++||+||+| .++..|+||+||+||.|+.|.+++|+.+.++...+..+++.+......+
T Consensus 411 LVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 411 LVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRV 490 (508)
T ss_dssp CEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--
T ss_pred EEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccC
Confidence 7999999999999999999999999 8899999999999999999999999987767777777777766555555
Q ss_pred cH
Q psy7792 75 PP 76 (138)
Q Consensus 75 ~~ 76 (138)
+.
T Consensus 491 ~~ 492 (508)
T 3fho_A 491 PT 492 (508)
T ss_dssp --
T ss_pred CC
Confidence 54
No 31
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.53 E-value=4.5e-15 Score=121.44 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=31.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
||||+++++|||+|+|++|||||+|+++..|+||+|| ||. +.|.++.|+++.+
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 6999999999999999999999999999999999999 998 8899999998763
No 32
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.52 E-value=1.9e-15 Score=123.24 Aligned_cols=52 Identities=29% Similarity=0.505 Sum_probs=49.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|++|||||+|+++..|+||+|| ||. +.|.++.|+++.
T Consensus 456 LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 456 LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 6999999999999999999999999999999999999 998 889999999876
No 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.50 E-value=1.4e-14 Score=117.77 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=59.6
Q ss_pred CeecccccccCCCCCccEEEE-------------------cCCCCCHHHHHHHhhccccC-CCcceEEEeee--CCCcHH
Q psy7792 1 MVATDVASKGLDFEEIKHVIN-------------------YDMPDDVENYVHRIGRTGRS-GKTGLATTFIN--KSNDES 58 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~-------------------~dlP~~~~~y~qr~GRagR~-g~~g~~i~~~~--~~~~~~ 58 (138)
||||+++++|||+| |++||| |++|.++++|+||+||+||. |++|.+++|++ ...+..
T Consensus 227 LVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~ 305 (440)
T 1yks_A 227 ILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAH 305 (440)
T ss_dssp EEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTT
T ss_pred EEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhh
Confidence 69999999999999 999996 99999999999999999998 68999999973 333666
Q ss_pred HHHHHHHHHHHhcccC
Q psy7792 59 VLLDLKHLLLEARQRI 74 (138)
Q Consensus 59 ~~~~l~~~~~~~~~~~ 74 (138)
.+..++..+......+
T Consensus 306 ~l~~l~~~~~~~~~~l 321 (440)
T 1yks_A 306 HVCWLEASMLLDNMEV 321 (440)
T ss_dssp BHHHHHHHHHHTTSCC
T ss_pred hhhhhhHHhccccccc
Confidence 6666766654444433
No 34
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.48 E-value=2.7e-14 Score=122.62 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=51.8
Q ss_pred CeecccccccCCCC--------CccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFE--------EIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~--------~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+||||+++||+|++ .+.+|||+++|.+...|+||+||+||.|.+|.+++|++..+
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 59999999999998 55699999999999999999999999999999999999874
No 35
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.47 E-value=2.6e-14 Score=120.97 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=57.2
Q ss_pred CeecccccccCCCCCccEE--------------------EEcCCCCCHHHHHHHhhccccCCC-cceEEEeee---CCCc
Q psy7792 1 MVATDVASKGLDFEEIKHV--------------------INYDMPDDVENYVHRIGRTGRSGK-TGLATTFIN---KSND 56 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~V--------------------I~~dlP~~~~~y~qr~GRagR~g~-~g~~i~~~~---~~~~ 56 (138)
|||||++++|||++ |++| ||||+|.++++|+||+||+||.|. +|.+++|++ +. +
T Consensus 405 LVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~-d 482 (618)
T 2whx_A 405 VVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN-D 482 (618)
T ss_dssp EEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC-C
T ss_pred EEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchh-h
Confidence 69999999999997 9888 888889999999999999999975 899999997 44 6
Q ss_pred HHHHHHHHHHHHH
Q psy7792 57 ESVLLDLKHLLLE 69 (138)
Q Consensus 57 ~~~~~~l~~~~~~ 69 (138)
...+..+++.+..
T Consensus 483 ~~~l~~le~~i~l 495 (618)
T 2whx_A 483 EDHAHWTEAKMLL 495 (618)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HHHHHHHHhHhcc
Confidence 6666777766544
No 36
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.46 E-value=5.7e-14 Score=111.56 Aligned_cols=54 Identities=33% Similarity=0.503 Sum_probs=51.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
||||+++++|||+|++++||+||+|+++..|+||+||+||.|+ |.++.|+++..
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 6999999999999999999999999999999999999999998 99999998764
No 37
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.45 E-value=6.3e-14 Score=114.47 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=47.2
Q ss_pred CeecccccccCCCCCccEEEE--------------------cCCCCCHHHHHHHhhccccCCC-cceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN--------------------YDMPDDVENYVHRIGRTGRSGK-TGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~--------------------~dlP~~~~~y~qr~GRagR~g~-~g~~i~~~~~~ 54 (138)
||||+++++|||+|+ ++||| ||+|.++++|+||+||+||.|. +|.++.|+++.
T Consensus 240 LVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 240 VITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred EEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 699999999999999 99999 8899999999999999999997 89999999875
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.44 E-value=5e-14 Score=121.61 Aligned_cols=52 Identities=27% Similarity=0.488 Sum_probs=36.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|++|||||+|+|+..|+||+|| ||. +.|.++.|+++.
T Consensus 698 LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 698 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp EEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 6999999999999999999999999999999999999 998 889999999775
No 39
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.43 E-value=1.1e-13 Score=121.79 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=37.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
||||+++++|||+|+|++|||||+|+|+..|+||+|| ||. +.|.++.|++...
T Consensus 698 LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 698 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp EEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHH
T ss_pred EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 6999999999999999999999999999999999999 998 7789999987653
No 40
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.42 E-value=7.6e-14 Score=118.98 Aligned_cols=52 Identities=35% Similarity=0.643 Sum_probs=48.1
Q ss_pred CeecccccccCCCCCccEEE----------EcC-----------CCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVI----------NYD-----------MPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI----------~~d-----------lP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
|||||+++||||++ |++|| ||| +|.+.++|+||+||+|| |++|. +.|+++.+
T Consensus 443 LVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e 515 (666)
T 3o8b_A 443 VVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGE 515 (666)
T ss_dssp EEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCC
T ss_pred EEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecch
Confidence 69999999999996 99988 788 99999999999999999 99999 99998764
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.42 E-value=1.3e-13 Score=117.68 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=55.3
Q ss_pred CeecccccccCCCCCccEEEE--------------------cCCCCCHHHHHHHhhccccC-CCcceEEEeee--CCCcH
Q psy7792 1 MVATDVASKGLDFEEIKHVIN--------------------YDMPDDVENYVHRIGRTGRS-GKTGLATTFIN--KSNDE 57 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~--------------------~dlP~~~~~y~qr~GRagR~-g~~g~~i~~~~--~~~~~ 57 (138)
||||+++++|||+| |++||| ||+|.++++|+||+||+||. |+.|.+++|+. ...+.
T Consensus 460 LVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~ 538 (673)
T 2wv9_A 460 VITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDT 538 (673)
T ss_dssp EEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCT
T ss_pred EEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHH
Confidence 69999999999999 999998 67999999999999999999 78999999973 23355
Q ss_pred HHHHHHHHHH
Q psy7792 58 SVLLDLKHLL 67 (138)
Q Consensus 58 ~~~~~l~~~~ 67 (138)
..+..++..+
T Consensus 539 ~~l~~ie~~~ 548 (673)
T 2wv9_A 539 MLAHWTEAKI 548 (673)
T ss_dssp TBHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.42 E-value=1.1e-13 Score=112.74 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=48.4
Q ss_pred CeecccccccCCCCCccEEEEcC--------------------CCCCHHHHHHHhhccccCCC-cceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYD--------------------MPDDVENYVHRIGRTGRSGK-TGLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~d--------------------lP~~~~~y~qr~GRagR~g~-~g~~i~~~~~ 53 (138)
||||+++++|||+|+ ++||||| +|.++++|+||+||+||.|. .|.+++|+..
T Consensus 238 LVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 238 VVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred EEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 699999999999999 9999999 99999999999999999998 8888888643
No 43
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.40 E-value=4.1e-13 Score=114.35 Aligned_cols=59 Identities=24% Similarity=0.416 Sum_probs=53.0
Q ss_pred CeecccccccCCCCCccEEEEcCC-----CCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM-----PDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLL 61 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl-----P~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~ 61 (138)
||||+++++|+|+|+|++||++|. |.+.++|+||+||+||. ..|.+++|+++. +..+..
T Consensus 499 LVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~-~~~~~~ 562 (661)
T 2d7d_A 499 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKI-TKSMEI 562 (661)
T ss_dssp EEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSC-CHHHHH
T ss_pred EEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCC-CHHHHH
Confidence 689999999999999999999997 99999999999999998 789999999886 444433
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.39 E-value=2.5e-13 Score=117.78 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=51.8
Q ss_pred CeecccccccCCCCC--------------------------------c-----cEEEEcCCCCCHHHHHHHhhccccCCC
Q psy7792 1 MVATDVASKGLDFEE--------------------------------I-----KHVINYDMPDDVENYVHRIGRTGRSGK 43 (138)
Q Consensus 1 LvaT~~~~~GiD~~~--------------------------------V-----~~VI~~dlP~~~~~y~qr~GRagR~g~ 43 (138)
+||||+++||+||+. | .+||||++|.+...|.||+||+||.|.
T Consensus 493 tIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 493 TIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp EEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred EEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCC
Confidence 599999999999997 4 599999999999999999999999999
Q ss_pred cceEEEeeeCCC
Q psy7792 44 TGLATTFINKSN 55 (138)
Q Consensus 44 ~g~~i~~~~~~~ 55 (138)
+|.+++|++..+
T Consensus 573 ~G~s~~fls~eD 584 (853)
T 2fsf_A 573 AGSSRFYLSMED 584 (853)
T ss_dssp CEEEEEEEETTS
T ss_pred CeeEEEEecccH
Confidence 999999999774
No 45
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.38 E-value=5.2e-13 Score=113.76 Aligned_cols=61 Identities=21% Similarity=0.389 Sum_probs=53.2
Q ss_pred CeecccccccCCCCCccEEEEcCC-----CCCHHHHHHHhhccccCCCcceEEEeeeCCCcHHHHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM-----PDDVENYVHRIGRTGRSGKTGLATTFINKSNDESVLLDL 63 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl-----P~~~~~y~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l 63 (138)
||||+++++|+|+|+|++||++|. |.+..+|+||+||+||.+ .|.+++|+++. +..+...+
T Consensus 493 LvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~-~~~~~~~i 558 (664)
T 1c4o_A 493 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV-SEAMQRAI 558 (664)
T ss_dssp EEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC-CHHHHHHH
T ss_pred EEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC-CHHHHHHH
Confidence 689999999999999999999998 999999999999999995 79999999876 44443333
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.38 E-value=4.1e-13 Score=119.35 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=53.6
Q ss_pred Cee----cccccccCCCCCc-cEEEEcCCC--------------------------------------------------
Q psy7792 1 MVA----TDVASKGLDFEEI-KHVINYDMP-------------------------------------------------- 25 (138)
Q Consensus 1 Lva----T~~~~~GiD~~~V-~~VI~~dlP-------------------------------------------------- 25 (138)
||| |+++++|||+|+| ++|||||+|
T Consensus 323 LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1054)
T 1gku_B 323 LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKK 402 (1054)
T ss_dssp EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHH
T ss_pred EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588 9999999999996 999999999
Q ss_pred ---------------------CCHHHHHHHhhccccCCCcc--eEEEeeeCCCcHHHHHHHHHHHHH
Q psy7792 26 ---------------------DDVENYVHRIGRTGRSGKTG--LATTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 26 ---------------------~~~~~y~qr~GRagR~g~~g--~~i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
.++.+|+||+||+||.|..| .+++|+... +...+..+++.+..
T Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 403 VMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp HHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred HhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 79999999999999988775 478887776 67777777777664
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.38 E-value=7.2e-13 Score=118.31 Aligned_cols=66 Identities=33% Similarity=0.549 Sum_probs=56.1
Q ss_pred Cee----cccccccCCCCC-ccEEEEcCCCC-------------------------------------------------
Q psy7792 1 MVA----TDVASKGLDFEE-IKHVINYDMPD------------------------------------------------- 26 (138)
Q Consensus 1 Lva----T~~~~~GiD~~~-V~~VI~~dlP~------------------------------------------------- 26 (138)
||| |++++||||+|+ |++|||||+|.
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~ 437 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEF 437 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 688 999999999999 99999999999
Q ss_pred -----------------------CHHHHHHHhhccccCCC----cceEEEeeeCCCcHHHHHHHHHHHHH
Q psy7792 27 -----------------------DVENYVHRIGRTGRSGK----TGLATTFINKSNDESVLLDLKHLLLE 69 (138)
Q Consensus 27 -----------------------~~~~y~qr~GRagR~g~----~g~~i~~~~~~~~~~~~~~l~~~~~~ 69 (138)
++.+|+||+|||||.|. .|.+++++ +|...+..+++.+..
T Consensus 438 ~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 438 VEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLLL 504 (1104)
T ss_dssp HHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHHH
T ss_pred HHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHhh
Confidence 88899999999999654 45666665 377888888887763
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.36 E-value=1e-12 Score=114.43 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=37.3
Q ss_pred cEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 17 KHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 17 ~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
.+||||++|.+...|.||+||+||.|.+|.+++|++..+
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred cEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 499999999999999999999999999999999999874
No 49
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.34 E-value=3.7e-13 Score=103.41 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=34.6
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceE--EEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLA--TTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~--i~~~~~~ 54 (138)
|++|+++++|||++.+++||+||+|||+..|.||+||++|.|+.+.+ +.|++..
T Consensus 169 L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 169 VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 58999999999999999999999999999999999999999987654 4455543
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.31 E-value=3.6e-12 Score=112.49 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=47.5
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFI 51 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~ 51 (138)
||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.+.++++.
T Consensus 560 LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 560 LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 699999999999999999999999999999999999999999988666554
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.30 E-value=2.4e-12 Score=111.56 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=50.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCC-CHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD-DVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~-~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|++||++|+|. +.+.|.||+||+||.|++|.+++++++.
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 79999999999999999999999996 7889999999999999999999999853
No 52
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.2e-12 Score=113.28 Aligned_cols=60 Identities=27% Similarity=0.410 Sum_probs=53.5
Q ss_pred CeecccccccCCCCCccEEEE----cCC----CCCHHHHHHHhhccccCCC--cceEEEeeeCCCcHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YDM----PDDVENYVHRIGRTGRSGK--TGLATTFINKSNDESVL 60 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~dl----P~~~~~y~qr~GRagR~g~--~g~~i~~~~~~~~~~~~ 60 (138)
||||+++++|||+|++++||+ ||. |.++..|+||+|||||.|. .|.+++++++..+...+
T Consensus 436 LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~ 505 (1010)
T 2xgj_A 436 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 505 (1010)
T ss_dssp EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHH
T ss_pred EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHH
Confidence 699999999999999999999 999 9999999999999999996 59999999876444333
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.1e-12 Score=114.28 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=48.9
Q ss_pred CeecccccccCCCCCccEEEEcCCC--------CCHHHHHHHhhccccCC--CcceEEEeeeCCCcHHHH
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMP--------DDVENYVHRIGRTGRSG--KTGLATTFINKSNDESVL 60 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP--------~~~~~y~qr~GRagR~g--~~g~~i~~~~~~~~~~~~ 60 (138)
||||+++++|||+|+|++||+++.| -++.+|+||+|||||.| ..|.+++++++..+...+
T Consensus 534 LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~ 603 (1108)
T 3l9o_A 534 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 603 (1108)
T ss_dssp EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHH
T ss_pred EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHH
Confidence 6999999999999999999988764 36778999999999999 689999998876444433
No 54
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.26 E-value=5.6e-12 Score=102.13 Aligned_cols=54 Identities=20% Similarity=0.412 Sum_probs=47.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCc---ceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKT---GLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~---g~~i~~~~~~ 54 (138)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+. ...+.|++..
T Consensus 398 Lv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 398 IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 79999999999999999999999999999999999999999954 3444456543
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.25 E-value=4.6e-12 Score=108.28 Aligned_cols=50 Identities=34% Similarity=0.549 Sum_probs=44.9
Q ss_pred CeecccccccCCCCCccEEEEcCC--------------CCCHHHHHHHhhccccCCCc---ceEEEee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM--------------PDDVENYVHRIGRTGRSGKT---GLATTFI 51 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl--------------P~~~~~y~qr~GRagR~g~~---g~~i~~~ 51 (138)
||||+++++|||+ +|++||++++ |.+.++|+||+|||||.|.. |.++.+.
T Consensus 376 LVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 376 LVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp EEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred EEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 6999999999999 9999999999 88999999999999999964 6666554
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.25 E-value=1.7e-12 Score=112.30 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=50.0
Q ss_pred CeecccccccCCCCCccEEEEcCC------------------CCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM------------------PDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl------------------P~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|+|++||++++ |.+.++|+||+|||||. .+|.++.|+++.
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 699999999999999999999888 99999999999999999 889999999754
No 57
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.22 E-value=6.5e-12 Score=101.79 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=42.9
Q ss_pred CeecccccccCCCCCccE-----------------EEEcCCCCCHHHHHHHhhccccCCC-cceEEEee
Q psy7792 1 MVATDVASKGLDFEEIKH-----------------VINYDMPDDVENYVHRIGRTGRSGK-TGLATTFI 51 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~-----------------VI~~dlP~~~~~y~qr~GRagR~g~-~g~~i~~~ 51 (138)
||||+++++|||+| +.+ ||+++.|.++++|+||+||+||.|. .+.+++|.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 69999999999999 654 6889999999999999999999985 45555554
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.20 E-value=3.4e-12 Score=104.33 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=47.7
Q ss_pred Ceec-ccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceEEEeee
Q psy7792 1 MVAT-DVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLATTFIN 52 (138)
Q Consensus 1 LvaT-~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~ 52 (138)
|||| +++++|+|+|+|++||++++|+++..|+|++||+||.|+.+..+.+++
T Consensus 401 Lv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 401 IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 6899 999999999999999999999999999999999999998775566555
No 59
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.18 E-value=1.2e-11 Score=105.27 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=46.3
Q ss_pred CeecccccccCCCCCccEEEE----cC-------CCCCHHHHHHHhhccccCC--CcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YD-------MPDDVENYVHRIGRTGRSG--KTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~d-------lP~~~~~y~qr~GRagR~g--~~g~~i~~~~~~~ 55 (138)
||||+++++|||+|++++||+ || .|.+..+|.||+|||||.| ..|.++.+++..+
T Consensus 342 lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 342 IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 699999999999999999999 99 8999999999999999988 4799999987753
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.17 E-value=1.8e-11 Score=104.51 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=50.7
Q ss_pred CeecccccccCCCCCccEEEE----cC----CCCCHHHHHHHhhccccCC--CcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YD----MPDDVENYVHRIGRTGRSG--KTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~d----lP~~~~~y~qr~GRagR~g--~~g~~i~~~~~~~ 55 (138)
||||+++++|||+|++++||+ || .|.++.+|+||+|||||.| ..|.++.+++..+
T Consensus 324 lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 324 VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 699999999999999999999 87 6999999999999999988 5799999998764
No 61
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.14 E-value=2.2e-11 Score=103.70 Aligned_cols=54 Identities=28% Similarity=0.512 Sum_probs=50.2
Q ss_pred CeecccccccCCCCCccEEEE----cC---CCCCHHHHHHHhhccccCC--CcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YD---MPDDVENYVHRIGRTGRSG--KTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~d---lP~~~~~y~qr~GRagR~g--~~g~~i~~~~~~ 54 (138)
||||+++++|||+|++++||+ || .|.++.+|+||+|||||.| ..|.++.+++..
T Consensus 326 lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 326 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 699999999999999999999 77 7999999999999999998 579999998876
No 62
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.10 E-value=4.1e-11 Score=97.66 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=43.1
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceE--EEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLA--TTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~--i~~~~~~ 54 (138)
||+|+++++|+|++.+++||+||+|+++..|.|++||++|.|+...+ +.|+...
T Consensus 398 l~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 398 VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 57999999999999999999999999999999999999999976554 3444443
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.08 E-value=5.7e-11 Score=99.04 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=40.7
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGK 43 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~ 43 (138)
||+|+++++|+|+|+|++||++++|+++..|+||+||+||.+.
T Consensus 503 lvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 503 LTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4788999999999999999999999999999999999999774
No 64
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.07 E-value=1.2e-10 Score=103.18 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=44.0
Q ss_pred CeecccccccCCCCCccEEEEcCCCC---------CHHHHHHHhhccccCC--CcceEEEeee
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPD---------DVENYVHRIGRTGRSG--KTGLATTFIN 52 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~---------~~~~y~qr~GRagR~g--~~g~~i~~~~ 52 (138)
||||+++++|||+|+ ..||++++|+ ++.+|+||+|||||.| ..|.++.++.
T Consensus 429 LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 429 LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 699999999999999 6666666766 9999999999999998 5677887773
No 65
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.06 E-value=1.1e-10 Score=104.76 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=50.3
Q ss_pred CeecccccccCCCCCccEEEEcCC-CCCHHHHHHHhhccccCCCcceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDM-PDDVENYVHRIGRTGRSGKTGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dl-P~~~~~y~qr~GRagR~g~~g~~i~~~~~~ 54 (138)
||||+++++|||+|++++||+++. +.++..|+||+||+||.|+.|.+++++.+.
T Consensus 868 LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 868 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 699999999999999999999998 579999999999999999999999998654
No 66
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.03 E-value=5.6e-10 Score=94.61 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=47.2
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcce--EEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGL--ATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~--~i~~~~~~ 54 (138)
||+|.++++|||++.+++||+||+|||+..|.|++||++|.|+... ++.|++..
T Consensus 473 L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 473 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp EEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred EEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 5899999999999999999999999999999999999999997654 44455543
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.4e-09 Score=92.70 Aligned_cols=54 Identities=15% Similarity=0.307 Sum_probs=46.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCcceE--EEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKTGLA--TTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~g~~--i~~~~~~ 54 (138)
|++|.+++.|||++.+++||+||+|+|+..++|++||+.|.|+...+ +-|++..
T Consensus 629 LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 629 LLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp EEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred EEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 68999999999999999999999999999999999999999976444 3345443
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.76 E-value=4.3e-09 Score=97.54 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=47.8
Q ss_pred CeecccccccCCCCCccEEEE----------cCCCCCHHHHHHHhhccccCCC--cceEEEeeeCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----------YDMPDDVENYVHRIGRTGRSGK--TGLATTFINKS 54 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----------~dlP~~~~~y~qr~GRagR~g~--~g~~i~~~~~~ 54 (138)
||||+++++|||+|++.+||. ...|-++.+|.|++|||||.|. .|.++++..+.
T Consensus 1243 LvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1243 VVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp EEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred EEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 699999999999999999993 3357789999999999999996 79999998776
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.58 E-value=2e-08 Score=93.09 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=47.9
Q ss_pred CeecccccccCCCCCccEEEE----cCC------CCCHHHHHHHhhccccCC--CcceEEEeeeCCC
Q psy7792 1 MVATDVASKGLDFEEIKHVIN----YDM------PDDVENYVHRIGRTGRSG--KTGLATTFINKSN 55 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~----~dl------P~~~~~y~qr~GRagR~g--~~g~~i~~~~~~~ 55 (138)
||||+++++|||+|.+++||+ ||. |-++.+|.|++|||||.| ..|.++.+.++.+
T Consensus 408 lvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 408 LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp EEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred EEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 699999999999999999996 553 568999999999999987 4789999888764
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.45 E-value=1e-07 Score=84.81 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=46.8
Q ss_pred CeecccccccCCCCCccEEEEcCCCCCHHHHHHHhhccccCCCc----ceEEEeeeC
Q psy7792 1 MVATDVASKGLDFEEIKHVINYDMPDDVENYVHRIGRTGRSGKT----GLATTFINK 53 (138)
Q Consensus 1 LvaT~~~~~GiD~~~V~~VI~~dlP~~~~~y~qr~GRagR~g~~----g~~i~~~~~ 53 (138)
||+|+.+.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 6999999999999999 789999999999999999999998754 778887753
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.53 E-value=0.0017 Score=53.73 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=26.6
Q ss_pred eecccccccCCCCC----ccEEEEcCCCCC-H-----------------------------HHHHHHhhccccCCCcceE
Q psy7792 2 VATDVASKGLDFEE----IKHVINYDMPDD-V-----------------------------ENYVHRIGRTGRSGKTGLA 47 (138)
Q Consensus 2 vaT~~~~~GiD~~~----V~~VI~~dlP~~-~-----------------------------~~y~qr~GRagR~g~~g~~ 47 (138)
|+|..+.+|||+|+ +++||++++|.. + ....|.+||+-|....--+
T Consensus 435 V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 435 VMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp EC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred EecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE
Confidence 48999999999996 899999999932 2 1235788888886554445
Q ss_pred EEeeeC
Q psy7792 48 TTFINK 53 (138)
Q Consensus 48 i~~~~~ 53 (138)
|.++.+
T Consensus 515 v~llD~ 520 (540)
T 2vl7_A 515 IYLCDS 520 (540)
T ss_dssp EEEESG
T ss_pred EEEEcc
Confidence 555544
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.25 E-value=0.029 Score=49.69 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=34.4
Q ss_pred EEEEcCCCCCHHHHHHHhhccccCCCcceEEEeeeCCC
Q psy7792 18 HVINYDMPDDVENYVHRIGRTGRSGKTGLATTFINKSN 55 (138)
Q Consensus 18 ~VI~~dlP~~~~~y~qr~GRagR~g~~g~~i~~~~~~~ 55 (138)
+||--..+.|..-=-|=.||+||-|.+|.+..|++-.+
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78998899998888899999999999999999998763
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=77.86 E-value=22 Score=27.57 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=35.3
Q ss_pred cccccccCC-----CCCccEEEEcCCCCCHHH-HHHHhhccccCC----CcceEEEeeeCC
Q psy7792 4 TDVASKGLD-----FEEIKHVINYDMPDDVEN-YVHRIGRTGRSG----KTGLATTFINKS 54 (138)
Q Consensus 4 T~~~~~GiD-----~~~V~~VI~~dlP~~~~~-y~qr~GRagR~g----~~g~~i~~~~~~ 54 (138)
|.+.+-|++ ....+.||-||.-+|+.. .+|.+-|+-|.| ++-.++-+++..
T Consensus 177 tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 177 SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 556666776 678899999999999987 589888877763 345566666655
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=66.88 E-value=8.3 Score=32.25 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=30.7
Q ss_pred Ceec--ccccccCCCC--CccEEEEcCCCCC-------------------HH----------HHHHHhhccccCCCcceE
Q psy7792 1 MVAT--DVASKGLDFE--EIKHVINYDMPDD-------------------VE----------NYVHRIGRTGRSGKTGLA 47 (138)
Q Consensus 1 LvaT--~~~~~GiD~~--~V~~VI~~dlP~~-------------------~~----------~y~qr~GRagR~g~~g~~ 47 (138)
|++| -.+.+|||++ ..+.||...+|-- .- ...|-+||+=|....--+
T Consensus 498 L~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~ 577 (620)
T 4a15_A 498 IFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGA 577 (620)
T ss_dssp EEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEE
T ss_pred EEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEE
Confidence 3454 3899999998 5778999998832 11 125889998887765556
Q ss_pred EEeeeCC
Q psy7792 48 TTFINKS 54 (138)
Q Consensus 48 i~~~~~~ 54 (138)
+.++++.
T Consensus 578 v~llD~R 584 (620)
T 4a15_A 578 CVILDKR 584 (620)
T ss_dssp EEEECGG
T ss_pred EEEEccc
Confidence 6666543
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=32.88 E-value=17 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=20.2
Q ss_pred eec--ccccccCCCC-----CccEEEEcCCCC
Q psy7792 2 VAT--DVASKGLDFE-----EIKHVINYDMPD 26 (138)
Q Consensus 2 vaT--~~~~~GiD~~-----~V~~VI~~dlP~ 26 (138)
++| ..+.+|||++ .++.||-..+|-
T Consensus 442 ~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 442 GSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp EEESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred EEEecceecccccccccCCcceeEEEEEcCCC
Confidence 455 5899999999 478899988874
No 76
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=26.78 E-value=39 Score=22.75 Aligned_cols=42 Identities=12% Similarity=0.255 Sum_probs=23.6
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCc
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIP 75 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 75 (138)
+||+|+. ..|.....+...++. ....+......+...+...|
T Consensus 85 ~HR~G~l-~~ge~~v~Vav~s~H-R~~Af~A~~~~id~lK~~~P 126 (135)
T 4ap8_A 85 FHRLGLV-PVSEASIIIAVSSAH-RAASLEAVSYAIDTLKAKVP 126 (135)
T ss_dssp EEECEEE-ETTSEEEEEEEEESS-HHHHHHHHHHHHHHHHHHSC
T ss_pred hhhcccc-cCCCeEEEEEEEccC-HHHHHHHHHHHHHHHhhcCC
Confidence 4677766 556666666666665 44445544555544444443
No 77
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=26.58 E-value=41 Score=22.99 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=24.7
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
+||+|+. ..|.....+...++. ....+......+...+.+.|-
T Consensus 82 ~HR~G~l-~vGe~~v~VaVss~H-R~~Af~A~~~~iD~lK~~aPi 124 (150)
T 1fm0_E 82 IHRIGEL-WPGDEIVFVGVTSAH-RSSAFEAGQFIMDYLKTRAPF 124 (150)
T ss_dssp EEECEEE-CTTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEccc-CCCCEEEEEEEEcCc-HHHHHHHHHHHHHHHHhcCCE
Confidence 4667766 556655555555665 555555555555555555543
No 78
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=25.67 E-value=44 Score=22.93 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=27.2
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
+||+|+. ..|.....+...++. ....+......+...+.+.|-
T Consensus 86 ~HR~G~l-~vGe~iv~VaVss~H-R~~Af~A~~~~iD~lK~~aPi 128 (154)
T 2omd_A 86 HHRLGLV-KIGEPSFLVLAVGGH-REETFKACRYAVDETKKRVPI 128 (154)
T ss_dssp EEECEEE-ETTSCCEEEEEEESS-HHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEccc-CCCCeEEEEEEeccC-HHHHHHHHHHHHHHHHhhCCE
Confidence 4677766 567766666666666 555566666666666555554
No 79
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=25.36 E-value=44 Score=22.76 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
+||+|+. ..|.....+...++. ....+...+..+...+.+.|-
T Consensus 88 ~HR~G~l-~vGe~~v~VaVss~H-R~~Af~A~~~~iD~lK~~aPi 130 (147)
T 2wp4_A 88 AHRTGEL-QIGDAAVVIGASAPH-RAEAFDAARMCIELLKQEVPI 130 (147)
T ss_dssp EEECEEE-CTTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEccc-CCCCeEEEEEEeccC-HHHHHHHHHHHHHHHHhhCCE
Confidence 4677766 556655555555655 555555555565555555543
No 80
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=25.16 E-value=50 Score=17.35 Aligned_cols=21 Identities=48% Similarity=1.002 Sum_probs=17.2
Q ss_pred CCCCCCcCCCCCcccccccch
Q psy7792 94 DERGCAYCGGLGHRITACPKL 114 (138)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ 114 (138)
....|.+|+..||...+|++.
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSS
T ss_pred CCCeeeECCCCCcchhhCcCC
Confidence 345799999999999999654
No 81
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=24.84 E-value=44 Score=18.96 Aligned_cols=21 Identities=48% Similarity=1.002 Sum_probs=17.2
Q ss_pred CCCCCCcCCCCCcccccccch
Q psy7792 94 DERGCAYCGGLGHRITACPKL 114 (138)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ 114 (138)
....|.+|+..||...+|++.
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTC
T ss_pred CCCcceeCCCCCcccccCcCC
Confidence 344799999999999999763
No 82
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=24.65 E-value=46 Score=22.71 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
+||+|+. ..|.....+...++. ....+......+...+.+.|-
T Consensus 80 ~HR~G~l-~vGe~~v~VaVss~H-R~~Af~A~~~~iD~lK~~aPi 122 (149)
T 2q5w_E 80 VHRIGPL-QISDIAVLIAVSSPH-RKDAYRANEYAIERIKEIVPI 122 (149)
T ss_dssp EEECEEE-CTTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEccc-CCCCeEEEEEEEccc-HHHHHHHHHHHHHHHHhhCCE
Confidence 4666666 556655555555555 555555555555555555554
No 83
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=21.91 E-value=54 Score=22.38 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=25.2
Q ss_pred HHHhhccccCCCcceEEEeeeCCCcHHHHHHHHHHHHHhcccCcH
Q psy7792 32 VHRIGRTGRSGKTGLATTFINKSNDESVLLDLKHLLLEARQRIPP 76 (138)
Q Consensus 32 ~qr~GRagR~g~~g~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (138)
+||+|+. ..|.....+...++. ....+......+...+.+.|-
T Consensus 79 ~HR~G~l-~~Ge~~v~VaVss~H-R~~Af~A~~~~id~lK~~~Pi 121 (148)
T 3rpf_A 79 AHSLGDV-LIGQSSFLCVSMGKN-RKNALELYENFIEDFKHNAPI 121 (148)
T ss_dssp EEEEEEE-ETTCEEEEEEEEESS-HHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEccc-CCCCEEEEEEEEccc-HHHHHHHHHHHHHHHHhcCCE
Confidence 5777776 566666666666665 555555555555555554443
Done!