Query psy7793
Match_columns 316
No_of_seqs 150 out of 397
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:59:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_C 80 kDa nuclear CAP bind 99.9 2.3E-25 7.9E-30 234.1 14.0 266 12-304 100-461 (771)
2 1hu3_A EIF4GII; heat repeat, t 99.3 5.9E-13 2E-17 123.3 5.8 95 15-113 144-245 (260)
3 2vso_E Eukaryotic initiation f 99.2 6.7E-12 2.3E-16 117.5 5.0 92 15-110 171-283 (284)
4 3rk6_A Polyadenylate-binding p 99.0 2.9E-10 1E-14 104.1 5.6 86 15-105 126-234 (234)
5 2i2o_A EIF4G-like protein; pro 98.5 1.4E-07 4.7E-12 85.8 5.5 93 16-111 102-210 (224)
6 1uw4_B UPF2, regulator of nons 83.8 0.76 2.6E-05 42.2 3.7 98 10-110 93-221 (248)
7 1ug3_A EIF4GI, eukaryotic prot 82.8 1.3 4.5E-05 41.7 5.0 94 207-303 80-177 (339)
8 1h2v_C 80 kDa nuclear CAP bind 38.2 33 0.0011 36.0 5.3 60 5-66 377-440 (771)
9 3l6a_A Eukaryotic translation 36.5 37 0.0013 32.2 5.0 91 207-304 82-175 (364)
10 1w33_A BbcrAsp-1; complement r 29.1 97 0.0033 26.9 5.9 19 178-200 50-68 (181)
11 4b89_A General negative regula 29.1 67 0.0023 29.3 5.0 100 11-111 123-231 (249)
12 4gmj_A CCR4-NOT transcription 27.5 58 0.002 29.3 4.3 101 10-111 97-208 (229)
13 2jvw_A Uncharacterized protein 26.4 57 0.0019 25.1 3.4 39 260-298 9-53 (88)
No 1
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=99.92 E-value=2.3e-25 Score=234.12 Aligned_cols=266 Identities=14% Similarity=0.215 Sum_probs=209.3
Q ss_pred cchhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCc---------hHHHHHHHH---HHHHHhhhChhhhHHH
Q psy7793 12 LVFHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTS---------SGRIFIKIL---FQELSEYMGLSKLNQK 75 (316)
Q Consensus 12 ~e~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~---------Svei~i~~L---Gq~L~e~~~~~~l~~~ 75 (316)
.+-..++.+.+|+|||+|++ | +++..+++ |++.++++ .+.+++..| |+.|.+..+. +++ +
T Consensus 100 ~~~~~~k~~lrFLa~L~n~~-V-v~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~~~~-~l~-~ 175 (771)
T 1h2v_C 100 NNYNEAVYLVRFLSDLVNCH-V-IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDA-EMD-R 175 (771)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-S-BCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHH-HHH-H
T ss_pred cChHHHHHHHHHHHHhccCC-e-ecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhcCHH-HHH-H
Confidence 35578999999999999999 8 89888877 77777654 444566555 9999999998 888 9
Q ss_pred HHhhchhhhh-hhcc-----h-----------hHHHHHHHHHHHHHHhcCCCCCCCccCcCCCCC--CCCcceeEee-cc
Q psy7793 76 IKDPFRPVAR-WKGK-----L-----------EKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVP--EEDKFTHLMT-LD 135 (316)
Q Consensus 76 I~erlr~~iL-~e~~-----i-----------~~r~q~~IE~Lf~ir~~~fk~~p~v~~eLdLve--~~dq~tH~i~-ld 135 (316)
|+++++. ++ +++. + +++++++++.|.++|+++++. |.+++.++.++ .+|+.+|.+. ++
T Consensus 176 lle~~~~-yl~~r~~~~~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~-~~iprp~~~f~~~l~d~~~H~lp~~~ 253 (771)
T 1h2v_C 176 IFANTES-YLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQE-RHILRPYLAFDSILCEALQHNLPPFT 253 (771)
T ss_dssp HHHHHHH-HHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCC-SCCCCGGGGGTTTCCGGGCBCCCCCC
T ss_pred HHHHHHH-HHHhcCccchhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCC-cCCCchhhhccccccccccCCCCCCC
Confidence 9999999 65 4443 2 579999999999999999984 77777766665 5678899876 44
Q ss_pred CcCCccccCCceeeChhhhhhHHHHHHhhHhHcCCCCCCh-------hHHHHHHhhhhHHHHhhccC--Chhhh------
Q psy7793 136 GVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDD-------EETNLVALRRTIYLTIHSSL--DFEDC------ 200 (316)
Q Consensus 136 ~~~~~e~~L~~F~~d~~~~~~E~~y~~~k~eilg~~~~d~-------~e~~lv~lRr~IYLtimSSl--d~eEa------ 200 (316)
.+.+.+ ++.|. |-.++.+|.|+++..+ ...+ ..+.|++|++||+|+ +..||
T Consensus 254 ~p~~~~--------~~~yp-----~p~~~f~if~~~d~~e~~~~p~~~~id-r~l~re~ildIi~~~~~nrkecA~~Ll~ 319 (771)
T 1h2v_C 254 PPPHTE--------DSVYP-----MPRVIFRMFDYTDDPEGPVMPGSHSVE-RFVIEENLHCIIKSHWKERKTCAAQLVS 319 (771)
T ss_dssp CCCCCT--------TCCCC-----CCCBCCCCCCGGGCTTSSCCCCTTSHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcc--------cccCC-----ccceeeeccCCccccccccCCCcchHH-HHHHHHHHHHHHHHccCCHHHHHHHHhc
Confidence 333222 12222 3334455666433221 1233 778899999999999 66998
Q ss_pred ------------------------------------------hhh-hhchHHHHHHHHHHHhhhhccchhhHhHHHHHHH
Q psy7793 201 ------------------------------------------LIN-KMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFA 237 (316)
Q Consensus 201 ------------------------------------------~~~-r~~~~~F~~~F~~~Y~~i~~~e~n~Lrn~akff~ 237 (316)
+.+ +.|...|.+||+..|+++|+++++.+++++++|+
T Consensus 320 l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFS 399 (771)
T 1h2v_C 320 YPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFS 399 (771)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 555 7899999999999999999999999999999999
Q ss_pred HHHhhC--CcccchhceeEeCcCccCchhHHHHHHHHHHHHHHhChHHHHhhhcCCCchhhhcCCCCCC
Q psy7793 238 HQLFTD--AIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRD 304 (316)
Q Consensus 238 hLl~td--~l~w~vl~~I~ltE~dttss~RIfiK~lfqel~e~lGi~~l~~rl~d~~l~~~~~glFP~d 304 (316)
|.|+++ ..||+.|..+ ++.++++++|+|||.+||+++. |.- .+|+++ ++.+.+.+++|.+
T Consensus 400 hhLSNF~f~W~W~eW~~~--~e~~~~~p~r~Fik~ll~k~~R-LSy---~~rIk~-~lP~~~~~llp~~ 461 (771)
T 1h2v_C 400 HHLSNFQFRWSWEDWSDC--LSQDPESPKPKFVREVLEKCMR-LSY---HQRILD-IVPPTFSALCPSN 461 (771)
T ss_dssp HHHTTTTTCCCGGGGGGG--TTSCTTSHHHHHHHHHHHHHHH-TSC---HHHHHT-TSCGGGGGGSCCC
T ss_pred HHHhcCCcCccHHHhHHh--hcCCccCcHHHHHHHHHHHHHh-hhh---HHHHHH-hCcHHHHhhCCCC
Confidence 999999 6899988766 7889999999999999999985 332 468876 8889999999964
No 2
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=99.34 E-value=5.9e-13 Score=123.25 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=82.6
Q ss_pred hhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCchHHHHHHHH---HHHHHhhhChhhhHHHHHhhchhhhhhh
Q psy7793 15 HKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTSSGRIFIKIL---FQELSEYMGLSKLNQKIKDPFRPVARWK 87 (316)
Q Consensus 15 ~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~Svei~i~~L---Gq~L~e~~~~~~l~~~I~erlr~~iL~e 87 (316)
++..+.++||||||+++ | +++.++.+ |+++|+++++|+++.+| |+.|....+...++ .+|++++. ++++
T Consensus 144 ~r~lg~i~FIgeLy~~~-~-l~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~-~~f~~l~~-~~~~ 219 (260)
T 1hu3_A 144 RRSIGNIKFIGELFKLK-M-LTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMD-QYFNQMEK-IVKE 219 (260)
T ss_dssp HHHHHHHHHHHHHHTTT-C-SCHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCTTTHHHHH-HHHHHHHH-HHHS
T ss_pred HHHHhHHHHHHHHHhcC-C-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhCcccHHHHH-HHHHHHHH-HHhC
Confidence 45779999999999999 7 78777655 89999999999999999 99998854432666 99999999 9999
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCC
Q psy7793 88 GKLEKRVQYMIEVLAQVRKDNFKDFP 113 (316)
Q Consensus 88 ~~i~~r~q~~IE~Lf~ir~~~fk~~p 113 (316)
++++.|+||||+.++++|++|++..+
T Consensus 220 ~~ls~Rirfmi~~l~dLR~~~W~~~~ 245 (260)
T 1hu3_A 220 RKTSSRIRFMLQDVIDLRLCNWVSRR 245 (260)
T ss_dssp CSSCHHHHHHHHHHHHHHHTTTCC--
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999997544
No 3
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=99.21 E-value=6.7e-12 Score=117.54 Aligned_cols=92 Identities=10% Similarity=0.144 Sum_probs=79.6
Q ss_pred hhHhHHHHHHHHHhhcCccceeeeeeee----ccc----CCCCchHHHHHHHH---HHHHHhhhC---------hhhhHH
Q psy7793 15 HKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNE----EETTSSGRIFIKIL---FQELSEYMG---------LSKLNQ 74 (316)
Q Consensus 15 ~ql~n~~kFlaHL~n~~~V~~~eililq----LlE----~~Td~Svei~i~~L---Gq~L~e~~~---------~~~l~~ 74 (316)
++..+.++||||||+++ | +++.++.+ |++ .|+++++|+++++| |+.|....+ ...++
T Consensus 171 ~r~lg~i~FIgeLyk~~-~-l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md- 247 (284)
T 2vso_E 171 RRGLGLVRFIGFLYRLN-L-LTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLD- 247 (284)
T ss_dssp HHHHHHHHHHHHHHHTT-S-SCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHH-
T ss_pred HHHhhHHHHHHHHHhcc-C-CcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHH-
Confidence 46778899999999999 7 78777654 776 89999999999999 999988764 22556
Q ss_pred HHHhhchhhhhhhcchhHHHHHHHHHHHHHHhc-CCC
Q psy7793 75 KIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKD-NFK 110 (316)
Q Consensus 75 ~I~erlr~~iL~e~~i~~r~q~~IE~Lf~ir~~-~fk 110 (316)
.+|++++. +.+.++++.|+||||+.++++|++ |++
T Consensus 248 ~~f~~l~~-l~~~~~ls~RirFml~dlidLR~n~~W~ 283 (284)
T 2vso_E 248 SLFGILDN-IIQTAKISSRIKFKLIDIKELRHDKNWN 283 (284)
T ss_dssp HHHHHHHH-HHTTSCCCHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHH-HHhCCCCCHHHHHHHHHHHHHhcccCCC
Confidence 99999999 999999999999999999999997 884
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=98.99 E-value=2.9e-10 Score=104.13 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=73.1
Q ss_pred hhHhHHHHHHHHHhhc--------Cccceeeeee----ee----cccCCCCchHHHHHHHH---HHHHHh----hhChhh
Q psy7793 15 HKLRNVAKFFAHQLFT--------DAIGWHVLSC----IH----LNEEETTSSGRIFIKIL---FQELSE----YMGLSK 71 (316)
Q Consensus 15 ~ql~n~~kFlaHL~n~--------~~V~~~eili----lq----LlE~~Td~Svei~i~~L---Gq~L~e----~~~~~~ 71 (316)
++....++||||||++ + + +++.++ .+ ++++|+++++|+++++| |+.|.+ ..+. .
T Consensus 126 ~r~lg~i~FIgELf~~l~~~~~~~~-~-l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~-~ 202 (234)
T 3rk6_A 126 KRFHAFVLFLGELYLNLEIKGTNGQ-V-TRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKM-D 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHCCEECTTSS-E-ECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-H
T ss_pred HHHHHHHHHHHHHHhhhcccccccc-h-hHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhhcchhhhHH-H
Confidence 4677889999999998 6 6 565552 22 46789999999999999 999997 4455 6
Q ss_pred hHHHHHhhchhhhhhhcchhHHHHHHHHHHHHHH
Q psy7793 72 LNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVR 105 (316)
Q Consensus 72 l~~~I~erlr~~iL~e~~i~~r~q~~IE~Lf~ir 105 (316)
++ .+|+|+++ +++++++++|+||||+.++++|
T Consensus 203 md-~~f~rl~~-i~~~~~ls~Rirfml~dlieLR 234 (234)
T 3rk6_A 203 ME-EIIQRIEN-VVLDANCSRDVKQMLLKLVELR 234 (234)
T ss_dssp HH-HHHHHHHH-HHHHCCCCHHHHHHHHHHHHHC
T ss_pred HH-HHHHHHHH-HHhCCCCCHHHHHHHHHHHHhC
Confidence 66 99999999 9999999999999999999987
No 5
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=98.46 E-value=1.4e-07 Score=85.80 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=75.1
Q ss_pred hHhHHHHHHHHHhhc----Cccceeee-----eeee-cccC---CCCchHHHHHHHH---HHHHHhhhChhhhHHHHHhh
Q psy7793 16 KLRNVAKFFAHQLFT----DAIGWHVL-----SCIH-LNEE---ETTSSGRIFIKIL---FQELSEYMGLSKLNQKIKDP 79 (316)
Q Consensus 16 ql~n~~kFlaHL~n~----~~V~~~ei-----lilq-LlE~---~Td~Svei~i~~L---Gq~L~e~~~~~~l~~~I~er 79 (316)
+....++|+|+||.+ + ++...+ .+++ |++. |+++++|+++++| |..|....+. .++ .+|.+
T Consensus 102 r~lG~i~FIgELf~~l~~~~-~~~~~l~~i~~~cl~~Ll~~~~~p~Ee~lEcl~~LL~tvG~~Ld~~~~~-~md-~~f~~ 178 (224)
T 2i2o_A 102 EWVCLVSFICNIFDYLKVNN-MPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKMNVQ-LMD-ELFNL 178 (224)
T ss_dssp HHHHHHHHHHHHHHHSCBTT-BCCGGGHHHHHHHHHHHTSHHHHTSHHHHHHHHHHHHHHHHHHHHHCHH-HHH-HHHHH
T ss_pred HHhHHHHHHHHHHhHhcccC-cchHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHcccHH-HHH-HHHHH
Confidence 455788999999999 6 423332 1233 7775 7889999999999 9999988775 666 99999
Q ss_pred chhhhhhhcchhHHHHHHHHHHHHHHhcCCCC
Q psy7793 80 FRPVARWKGKLEKRVQYMIEVLAQVRKDNFKD 111 (316)
Q Consensus 80 lr~~iL~e~~i~~r~q~~IE~Lf~ir~~~fk~ 111 (316)
+++++++.+.++.|++|||..++++|++|++.
T Consensus 179 l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~ 210 (224)
T 2i2o_A 179 LRDGFLLQEDLSSMGRLLLLEILEFRAGGWKL 210 (224)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 99944666799999999999999999999974
No 6
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=83.80 E-value=0.76 Score=42.17 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=61.2
Q ss_pred CCcchhhHh-HHHHHHHHHhhcCccceeeeeeee----ccc--CC-----CCch-------HHHHHHHH---HHHHHhhh
Q psy7793 10 PGLVFHKLR-NVAKFFAHQLFTDAIGWHVLSCIH----LNE--EE-----TTSS-------GRIFIKIL---FQELSEYM 67 (316)
Q Consensus 10 ~~~e~~ql~-n~~kFlaHL~n~~~V~~~eililq----LlE--~~-----Td~S-------vei~i~~L---Gq~L~e~~ 67 (316)
++...+|-| +.++|+|+|||++ + ++.-+++. |+. .| ...+ +++++.+| |+.....+
T Consensus 93 n~~~~nQrRia~vkyLgELYny~-l-v~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~ 170 (248)
T 1uw4_B 93 NQPKFNQRRISSAKFLGELYNYR-M-VESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGS 170 (248)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHTT-S-SCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcchh
Confidence 444455544 6689999999999 6 66556554 221 11 2223 89999888 77664443
Q ss_pred ChhhhHHHHHhhchhhhh---------hhcchhHHHHHHHHHHHHHHhcCCC
Q psy7793 68 GLSKLNQKIKDPFRPVAR---------WKGKLEKRVQYMIEVLAQVRKDNFK 110 (316)
Q Consensus 68 ~~~~l~~~I~erlr~~iL---------~e~~i~~r~q~~IE~Lf~ir~~~fk 110 (316)
..+.++ ..+-.|+.-++ .+..++.+++||++.+++.=|.+++
T Consensus 171 ~~kkLd-~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~~~lrp~~~ 221 (248)
T 1uw4_B 171 SKRKLD-CFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIK 221 (248)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTTCC
T ss_pred hHHHHH-HHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHHhcccCc
Confidence 333444 44555554122 1335899999999999988554554
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=82.77 E-value=1.3 Score=41.67 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHhhhhccc---hhhHhHHHHHHHHHHhhCCccc-chhceeEeCcCccCchhHHHHHHHHHHHHHHhChH
Q psy7793 207 VAPLEQIFRESYSTVHRLD---INKLRNVAKFFAHQLFTDAIGW-HVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLS 282 (316)
Q Consensus 207 ~~~F~~~F~~~Y~~i~~~e---~n~Lrn~akff~hLl~td~l~w-~vl~~I~ltE~dttss~RIfiK~lfqel~e~lGi~ 282 (316)
...|.+.|..-++.+.++. |+.=..+|+|.|.++..+.+|. +++..+- ......-.+.-|+.-+|+.++.+.|.+
T Consensus 80 ~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~-~~l~~~g~~~~fl~~vl~~l~~~~g~~ 158 (339)
T 1ug3_A 80 TAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREIT-KPLRPLGKAASLLLEILGLLCKSMGPK 158 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHT-TTHHHHTCHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHcCHH
Confidence 5678888999999999887 5777899999999999999998 5665332 111122346689999999999999999
Q ss_pred HHHhhhcCCCchhhhcCCCCC
Q psy7793 283 KLNQKIKDPLLAPAMEGVFPR 303 (316)
Q Consensus 283 ~l~~rl~d~~l~~~~~glFP~ 303 (316)
.+..-+++..+. +..+||.
T Consensus 159 ~l~~~~~~s~l~--l~~f~P~ 177 (339)
T 1ug3_A 159 KVGTLWREAGLS--WKEFLPE 177 (339)
T ss_dssp HHHHHHHHTTCC--GGGTSCT
T ss_pred HHHHHHHHcCCC--HHHhCCC
Confidence 999998776676 6788885
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=38.21 E-value=33 Score=36.00 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=45.9
Q ss_pred hhhc--CCCcchhhHhHHHHHHHHHh-hcC-ccceeeeeeeecccCCCCchHHHHHHHHHHHHHhh
Q psy7793 5 ESLY--LPGLVFHKLRNVAKFFAHQL-FTD-AIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEY 66 (316)
Q Consensus 5 ~~~~--~~~~e~~ql~n~~kFlaHL~-n~~-~V~~~eililqLlE~~Td~Svei~i~~LGq~L~e~ 66 (316)
..+| .+.++...+++.+.++||.+ |++ ..+|+++... ++.+++++.++|++.+.+++..-
T Consensus 377 ~~lY~~i~~md~e~~~Rf~dwFShhLSNF~f~W~W~eW~~~--~e~~~~~p~r~Fik~ll~k~~RL 440 (771)
T 1h2v_C 377 EMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDC--LSQDPESPKPKFVREVLEKCMRL 440 (771)
T ss_dssp HHHHHTGGGBCHHHHHHHHHHHHHHHTTTTTCCCGGGGGGG--TTSCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHhcCCcCccHHHhHHh--hcCCccCcHHHHHHHHHHHHHhh
Confidence 4455 36799999999999999665 663 2557777544 68899999999999997777653
No 9
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=36.53 E-value=37 Score=32.20 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHhhhhccc---hhhHhHHHHHHHHHHhhCCcccchhceeEeCcCccCchhHHHHHHHHHHHHHHhChHH
Q psy7793 207 VAPLEQIFRESYSTVHRLD---INKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSK 283 (316)
Q Consensus 207 ~~~F~~~F~~~Y~~i~~~e---~n~Lrn~akff~hLl~td~l~w~vl~~I~ltE~dttss~RIfiK~lfqel~e~lGi~~ 283 (316)
...|.+.|..-++.+.+++ |.-=..+|.|.|.++..+.+|.+.+... ...++ +.-.|+ -+||-+..+.|-+.
T Consensus 82 ~~~~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~--l~~G~--~~~l~l-~vl~~~~k~~G~~~ 156 (364)
T 3l6a_A 82 SDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQP--LESGT--HFPLFL-LCLQQLAKLQDREW 156 (364)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHH--HGGGT--TTTHHH-HHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHH--hcccc--hHHHHH-HHHHHHHHhcCHHH
Confidence 4678888888888888887 4566789999999999999999866543 23332 233444 56799999999999
Q ss_pred HHhhhcCCCchhhhcCCCCCC
Q psy7793 284 LNQKIKDPLLAPAMEGVFPRD 304 (316)
Q Consensus 284 l~~rl~d~~l~~~~~glFP~d 304 (316)
+.+-++...+. +..+||-.
T Consensus 157 l~~l~~~sgl~--l~~FlPe~ 175 (364)
T 3l6a_A 157 LTELFQQSKVN--MQKMLPEI 175 (364)
T ss_dssp HHHHHHHHTCC--SGGGSCGG
T ss_pred HHHHHHHcCCC--HHHhCCcc
Confidence 88888544442 55567843
No 10
>1w33_A BbcrAsp-1; complement regulator, complement regulator acquiring surface protein, LYME borreliosis, factor H binding, TICK; 2.7A {Borrelia burgdorferi} PDB: 1w3z_A
Probab=29.14 E-value=97 Score=26.92 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=14.3
Q ss_pred HHHHHhhhhHHHHhhccCChhhh
Q psy7793 178 TNLVALRRTIYLTIHSSLDFEDC 200 (316)
Q Consensus 178 ~~lv~lRr~IYLtimSSld~eEa 200 (316)
.+..+.||.|| |||+|++.
T Consensus 50 ~ekm~iKRiiY----SSLnY~~~ 68 (181)
T 1w33_A 50 DIQMKIKRTLY----SSLDYKKE 68 (181)
T ss_dssp HHHHHHHHHHH----HHTTTCHH
T ss_pred HHHHHHHHHHH----hhccccHH
Confidence 44446778777 79999998
No 11
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=29.09 E-value=67 Score=29.30 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=71.0
Q ss_pred CcchhhHhHHHHHHHHHhhcCccce-eeeeeee--cccCCCCchHHHHHHHHHHHHHhhhCh------hhhHHHHHhhch
Q psy7793 11 GLVFHKLRNVAKFFAHQLFTDAIGW-HVLSCIH--LNEEETTSSGRIFIKILFQELSEYMGL------SKLNQKIKDPFR 81 (316)
Q Consensus 11 ~~e~~ql~n~~kFlaHL~n~~~V~~-~eililq--LlE~~Td~Svei~i~~LGq~L~e~~~~------~~l~~~I~erlr 81 (316)
..+-+.|.|+|.++|.+.-.+.-|+ |.-+.+. |++.-......+++.|+-+.|...... +.---.|..-|.
T Consensus 123 ~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k~SkiFkPPNPWt~~IL~lL~ 202 (249)
T 4b89_A 123 AIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLI 202 (249)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGTTCSSSSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcccCCccCCCCchHHHHHHHHH
Confidence 3577889999999999983332333 4444444 677777778889999998888766311 122226777788
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHhcCCCC
Q psy7793 82 PVARWKGKLEKRVQYMIEVLAQVRKDNFKD 111 (316)
Q Consensus 82 ~~iL~e~~i~~r~q~~IE~Lf~ir~~~fk~ 111 (316)
. +-+..++..-++|-||.||.-=+-+.++
T Consensus 203 E-ly~~~~LKlnlkFEIEvL~k~l~l~l~~ 231 (249)
T 4b89_A 203 E-LNEKANWKLSLTFEVEVLLKSFNLTTKS 231 (249)
T ss_dssp H-HHHHSCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred H-HHhCcchhHhHHHHHHHHHHHcCCChHh
Confidence 7 7888888889999999999865555544
No 12
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=27.48 E-value=58 Score=29.31 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=67.7
Q ss_pred CCcchhhHhHHHHHHHHHhhcCccce-eeeeeee--cccCCCCc--hHHHHHHHHHHHHHhhhC------hhhhHHHHHh
Q psy7793 10 PGLVFHKLRNVAKFFAHQLFTDAIGW-HVLSCIH--LNEEETTS--SGRIFIKILFQELSEYMG------LSKLNQKIKD 78 (316)
Q Consensus 10 ~~~e~~ql~n~~kFlaHL~n~~~V~~-~eililq--LlE~~Td~--Svei~i~~LGq~L~e~~~------~~~l~~~I~e 78 (316)
+..+-..|+|+|.++|.+.-.+..|+ |.-+.+. |+|.-..+ ...+++.|+.+.|..... ...---.|..
T Consensus 97 ~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~iFkPPNPW~~~IL~ 176 (229)
T 4gmj_A 97 NFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMN 176 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTSTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCCcCCCCChhHHHHHH
Confidence 44677789999999999984443444 4444444 56654333 477788888877766531 1122226777
Q ss_pred hchhhhhhhcchhHHHHHHHHHHHHHHhcCCCC
Q psy7793 79 PFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKD 111 (316)
Q Consensus 79 rlr~~iL~e~~i~~r~q~~IE~Lf~ir~~~fk~ 111 (316)
-|.. +-+..++.-.++|-||.||.-=.-++++
T Consensus 177 lL~E-ly~~~~lKlnlkFEIEvLfk~l~~~~~~ 208 (229)
T 4gmj_A 177 VLAE-LHQEHDLKLNLKFEIEVLCKNLALDINE 208 (229)
T ss_dssp HHHH-HHHCTTSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHH-HHhCccchhhHHHHHHHHHHHcCCChhh
Confidence 7777 7777888888999999999865555544
No 13
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=26.44 E-value=57 Score=25.12 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=31.3
Q ss_pred cCchhHHHHHHHHHHHHHHhChHHHHhhh------cCCCchhhhc
Q psy7793 260 TTSSGRIFIKILFQELSEYMGLSKLNQKI------KDPLLAPAME 298 (316)
Q Consensus 260 ttss~RIfiK~lfqel~e~lGi~~l~~rl------~d~~l~~~~~ 298 (316)
.+|---|=++-+..+||+..|-+.|-+|+ .||+++.++.
T Consensus 9 nnPLHGvtLE~ilt~Lv~~YGW~~L~~~i~I~CF~~~PSikSSLK 53 (88)
T 2jvw_A 9 NNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLK 53 (88)
T ss_dssp SCTTSSCCHHHHHHHHHHHTCHHHHHHHTTSSSTTSSCCHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHhCHHHHHhhcccccCCCCCchHHHHH
Confidence 55555566788999999999999999998 4888887653
Done!