RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7793
(316 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 1e-09
Identities = 61/349 (17%), Positives = 105/349 (30%), Gaps = 120/349 (34%)
Query: 3 MMESLYLPGLVFHKLRNV-----AKFFAHQ---LFT-------DAIG---WHVLSCIH-- 42
+ Y L+ L NV F L T D + +S H
Sbjct: 238 LKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 43 --LNEEETTSSGRIFIKIL---FQELSEYM------GLSKLNQKIKDPFRPVARWKG--- 88
L +E S + +K L Q+L + LS + + I+D +A W
Sbjct: 296 MTLTPDEVKS---LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---LATWDNWKH 349
Query: 89 ----KLEKRVQYMIEVL-AQVRKDNFKD---FPDVIEDLDLVPEEDKFTHLMTLDGVKDT 140
KL ++ + VL + F FP +P L
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP---PSAH-IPTI-------LLS----- 393
Query: 141 QDIL--NVFQYDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLDFE 198
++ +V + D ++N+ L + L ++ + ++I S + E
Sbjct: 394 --LIWFDVIKSDVMVVVNK-----LHKYSLVEKQPKES-----------TISIPS-IYLE 434
Query: 199 DCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDA--------IGWHVL 250
++ E+ +HR ++ F + L IG H L
Sbjct: 435 ------------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-L 481
Query: 251 SCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEG 299
I E T LF+ + ++ L QKI+ A G
Sbjct: 482 KNIEHPERMT----------LFRMV--FLDFRFLEQKIRHDSTAWNASG 518
Score = 39.8 bits (92), Expect = 0.001
Identities = 26/243 (10%), Positives = 67/243 (27%), Gaps = 67/243 (27%)
Query: 106 KDNFKDF-PDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPE----YLMN--EE 158
KD F +++ D +D +++ ++ I+ D L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIM--SKDAVSGTLRLFWTLLS 73
Query: 159 KYTTLRREILGDEDEDD---------EETNLVALRRTIYLTIHSSLDFEDCLINKMYV-- 207
K + ++ + + + E ++ +Y+ L ++ + K V
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 208 --------APLEQIFRESYSTVH--------RLDINKLRNVAKFFAHQLFTDAIGWHVLS 251
L ++ + + ++ + I W
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK---VQCKMDFKIFW---- 186
Query: 252 CIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRF 311
++L + + +L L KL +I + + D+ N +
Sbjct: 187 -LNLKNCNSPET------VLEM-------LQKLLYQIDPNWTSRS-------DHSSNIKL 225
Query: 312 AIN 314
I+
Sbjct: 226 RIH 228
Score = 38.3 bits (88), Expect = 0.004
Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 32/199 (16%)
Query: 36 HVLSCIHLNEEETTSSGRIFIKILFQELS-EYMGLSKLNQKIKDPFRPVAR---WKGKLE 91
H S + +E+T S I ++ EL + L++ I D +
Sbjct: 412 HKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 92 KRVQYMIEVLA-----QVRKDNFKDFPDVIEDLDLVPEEDKFTHLMT-LDGVKDTQDILN 145
QY + + F V D + E K H T + + L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKIRHDSTAWNASGSILNTLQ 525
Query: 146 VFQYDPEYLM-NEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLDFEDCLINK 204
++ Y+ N+ KY L IL L + + + ++ L+
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAIL---------DFLPKIEENLICSKYT------DLLRI 570
Query: 205 MYVAPLEQIFRESYSTVHR 223
+A E IF E++ V R
Sbjct: 571 ALMAEDEAIFEEAHKQVQR 589
Score = 37.5 bits (86), Expect = 0.005
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 25/165 (15%)
Query: 96 YMIEVLAQVRKDNFKDFPDVIEDL-----DLVPEEDKFTHLMTLDGVKDTQDILNVFQYD 150
Y I+ R D+ + I + L+ + L+ L V++ + N F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLS 265
Query: 151 PEYLM-----------NEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIH-SSLDFE 198
+ L+ + T + + DE +L+ YL L E
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPRE 321
Query: 199 DCLINKMYVAPLEQIFRESYSTVHR---LDINKLRNVAKFFAHQL 240
N ++ + + R+ +T ++ +KL + + + L
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A
3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Length = 771
Score = 56.4 bits (135), Expect = 5e-09
Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
Query: 192 HSSLDFEDCLINKMYVAP-LEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVL 250
+++L E C + + L Q Y + ++ + +F+H L W
Sbjct: 353 YTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWE 412
Query: 251 SCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTR 310
++ S F++ + ++ +Q+I D + P + P + +
Sbjct: 413 DWSDCLSQDPESPKPKFVREVLEKCMRLSY----HQRILDIVP-PTFSALCPSNPTCIYK 467
Query: 311 FA 312
+
Sbjct: 468 YG 469
Score = 40.6 bits (94), Expect = 6e-04
Identities = 8/74 (10%), Positives = 22/74 (29%)
Query: 9 LPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMG 68
L + + +F+H L W ++ S F++ + ++
Sbjct: 383 LDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSY 442
Query: 69 LSKLNQKIKDPFRP 82
++ + F
Sbjct: 443 HQRILDIVPPTFSA 456
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.006
Identities = 68/401 (16%), Positives = 105/401 (26%), Gaps = 134/401 (33%)
Query: 5 ESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVL-----SCIHLNEE----------ETT 49
E+ YL G H L AK T ++ + I
Sbjct: 92 ENCYLEGNDIHAL--AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 50 SSGR-----IF-----IKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIE 99
G IF F+EL + + + + G L K +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEEL----------RDLYQTYHVLV---GDLIKFSAETLS 196
Query: 100 VLAQVRKDNFKDFP---DV---IEDLDLVPEEDKFTHL---MTLDGVKDTQ-----DILN 145
L + D K F ++ +E+ P++D + L GV Q
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV--IQLAHYVVTAK 254
Query: 146 VFQYDPEYLMNEEKYTTLRREIL--------GDEDEDDEETNLVALRRTIYLTIHSSLDF 197
+ + P L + K T + L D E + A+ ++ + +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 198 ----------EDCLINK------MYV---APLEQIFRESYSTVHRLDINK-----LRNVA 233
ED L N M EQ+ T L K L N A
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 234 KFFAHQLFTDAIGWHVLS---------CIHLNEEETTSSGRIFIKILFQELSEYMGLSKL 284
K V+S + L + SG +I F E
Sbjct: 375 KNL------------VVSGPPQSLYGLNLTL-RKAKAPSGLDQSRIPFSE---------- 411
Query: 285 NQKIK-------------DPLLAPAMEGVFPRDNPKNTRFA 312
+K+K LL PA + + N F
Sbjct: 412 -RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Score = 30.8 bits (69), Expect = 0.81
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 27/85 (31%)
Query: 5 ESLYLPGLVFH-----KLR----NVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIF 55
+ + +P V+ LR ++++ + + W E TT
Sbjct: 453 KDIQIP--VYDTFDGSDLRVLSGSISERIVDCIIRLPVKW----------ETTTQFKATH 500
Query: 56 IKILF--QELSEYMGLSKLNQKIKD 78
I + F S GL L + KD
Sbjct: 501 I-LDFGPGGAS---GLGVLTHRNKD 521
Score = 28.1 bits (62), Expect = 5.0
Identities = 54/340 (15%), Positives = 88/340 (25%), Gaps = 133/340 (39%)
Query: 8 YLPGLVFHKLRN---------VAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKI 58
+ PG + L+ A A W E S R I +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAE-----TDSW----------ESFFVSVRKAITV 302
Query: 59 LFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQ-------YMI--------EVLAQ 103
LF ++G+ + + + + LE ++ M+ +V
Sbjct: 303 LF-----FIGV-----RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 104 VRKDNFKDFPD---------------VI----EDLD-LVPEEDKFTHLMTLD--GVKDTQ 141
V K N P V+ + L L K LD + ++
Sbjct: 353 VNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 142 DILNV-FQYDP-------EYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHS 193
L ++ P L + L I D +++ N ++ +Y T
Sbjct: 412 RKLKFSNRFLPVASPFHSHLL---VPASDL---INKDLVKNNVSFNAKDIQIPVYDTF-- 463
Query: 194 SLDFEDCLINKMYVAPLEQIFRE-SYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSC 252
D D R S S R+ + + W
Sbjct: 464 --DGSD--------------LRVLSGSISERI------------VDCIIRLPVKW----- 490
Query: 253 IHLNEEETTSSGRIFIKILF--QELSEYMGLSKLNQKIKD 290
E TT I + F S GL L + KD
Sbjct: 491 -----ETTTQFKATHI-LDFGPGGAS---GLGVLTHRNKD 521
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.12
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 16/40 (40%)
Query: 277 EYMGLSKLNQKIK--DPLLAPAMEGVFPRDNPKNTRFAIN 314
E L KL +K APA+ AI
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL--------------AIK 43
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 29.6 bits (67), Expect = 0.50
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 20/92 (21%)
Query: 15 HKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQ 74
+L AK A N EE F+ + + L++ +S
Sbjct: 26 PELYTAAKHCAKTHLAQLQ----------NTEE-------FLHLPHRLLTDI--ISDGVP 66
Query: 75 KIKDPFRPVARW-KGKLEKRVQYMIEVLAQVR 105
++P + W E+R + + ++
Sbjct: 67 CSQNPTEAIEAWINFNKEEREAFAESLRTSLK 98
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 28.9 bits (64), Expect = 1.6
Identities = 22/175 (12%), Positives = 43/175 (24%), Gaps = 21/175 (12%)
Query: 84 ARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTH------LMTLDGV 137
R + +E + +V ++ V E+ + F + +
Sbjct: 64 EREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLL 123
Query: 138 KDTQDILNVFQ-YDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLD 196
+ V + M + + + + T A L +H S
Sbjct: 124 AEGFRPRGVLAFIGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGS-- 181
Query: 197 FEDCLINKMYVAPLEQIFRESYSTV-----------HRLDINKLRNVAKFFAHQL 240
D ++ + + R Y H L R F H L
Sbjct: 182 -RDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPLMARVGLAFLEHWL 235
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 29.2 bits (66), Expect = 2.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 85 RWKGKLEKRVQYMIEVLAQVRKDNFKDFP 113
+W G R+++ +EV+ VR+ DF
Sbjct: 182 QWGGDYRNRMRFAVEVVRAVRERVGNDFI 210
>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 2.03A {Bacillus halodurans c-125}
Length = 803
Score = 29.1 bits (64), Expect = 2.4
Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 24/106 (22%)
Query: 8 YLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSG------------RIF 55
YL + ++ A F L + G+ V S E+
Sbjct: 469 YLRDTAYPIMKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIGEKGYAVSSATTMDLSL 528
Query: 56 IKILFQ---ELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMI 98
I F + ++ + I + F ++ + I
Sbjct: 529 IAECFDNCIQAAKRLS-------IDEDFV--KALSDAKQRLLPLQI 565
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.9 bits (65), Expect = 2.5
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 85 RWKGKLEKRVQYMIEVLAQVRKDNFKDFP--------DVIEDLDLVPEEDKFTHLMTLDG 136
++ G LE R ++ +E L +V+ D V + E D + D
Sbjct: 190 KYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADS 249
Query: 137 VKDTQDILNV 146
+ D+ ++
Sbjct: 250 L---VDMWDI 256
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein;
2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10
PDB: 1j8y_F
Length = 297
Score = 28.3 bits (64), Expect = 3.2
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 10/62 (16%)
Query: 20 VAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMG--LSKLNQKIK 77
+ +++ + I FIKI++ ELS G K
Sbjct: 45 LVFSLTNKIKERLKNEKPPTYI--------ERREWFIKIVYDELSNLFGGDKEPKVIPDK 96
Query: 78 DP 79
P
Sbjct: 97 IP 98
Score = 28.3 bits (64), Expect = 3.2
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 10/62 (16%)
Query: 232 VAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMG--LSKLNQKIK 289
+ +++ + I FIKI++ ELS G K
Sbjct: 45 LVFSLTNKIKERLKNEKPPTYI--------ERREWFIKIVYDELSNLFGGDKEPKVIPDK 96
Query: 290 DP 291
P
Sbjct: 97 IP 98
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 27.9 bits (63), Expect = 3.7
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 15 HKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLN- 73
H + +A + F D + EE F+++ Q+L E + L KLN
Sbjct: 149 HHVHYLATEYLETHFRD---------VSSTEE--------FLELSPQKLKEVISLEKLNV 191
Query: 74 QKIKDPFRPVARW-KGKLEKRVQYMIEVLAQVR 105
+ F V RW E R +M +V++ +
Sbjct: 192 GNERYVFEAVIRWIAHDTEIRKVHMKDVMSALW 224
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 27.6 bits (62), Expect = 5.5
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 19/93 (20%)
Query: 15 HKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLN- 73
+L A + F + +EE F + F + +++ ++
Sbjct: 157 SQLALKAADMIRRNFHK---------VIQDEE--------FYTLPFHLIRDWLSDLEITV 199
Query: 74 QKIKDPFRPVARW-KGKLEKRVQYMIEVLAQVR 105
+ F V +W + E+R +Y E+ +R
Sbjct: 200 DSEEVLFETVLKWVQRNAEERERYFEELFKLLR 232
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 27.6 bits (62), Expect = 6.5
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 85 RWKGKLEKRVQYMIEVLAQVRKDNFKDFP 113
+ G LE R++ + E+L +
Sbjct: 198 EYGGSLENRMRLLRELLEDTLDECAGRAA 226
>2a2f_X Exocyst complex component SEC15; all helical structure, protein
transport; 2.50A {Drosophila melanogaster}
Length = 325
Score = 26.9 bits (59), Expect = 8.0
Identities = 21/189 (11%), Positives = 58/189 (30%), Gaps = 27/189 (14%)
Query: 126 DKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALR- 184
D + ++ V ++IL+ Q+ P + N E+Y + ++ +
Sbjct: 14 DHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPF 73
Query: 185 --------RTIYLTIHSSLDFEDCL------INKMYVAPLEQIFRESYSTVHRLDINKLR 230
+++ + F + L + M + S+S + +
Sbjct: 74 SRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVF-RQP 132
Query: 231 NVAKFFAHQLFTDA---------IGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGL 281
++ Q+ D + V + + + +F ++ +E
Sbjct: 133 SITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSVSQTPSAMFHVA--RQDAEKQVG 190
Query: 282 SKLNQKIKD 290
++ KI +
Sbjct: 191 LRICSKIDE 199
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 27.0 bits (60), Expect = 9.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 137 VKDTQDILNVFQYDPEYLMNEEK 159
VK D+ F+ DP YL + +
Sbjct: 316 VKRRTDLTGAFKLDPVYLKHSHQ 338
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,938,871
Number of extensions: 303179
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 50
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)