Query psy7794
Match_columns 139
No_of_seqs 211 out of 297
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vso_E Eukaryotic initiation f 98.9 2.1E-10 7.1E-15 93.5 1.7 62 74-137 3-64 (284)
2 3rk6_A Polyadenylate-binding p 85.1 0.39 1.3E-05 38.1 2.1 30 106-135 16-47 (234)
3 1zl8_A LIN-7; heterodimer, alp 43.3 11 0.00038 24.2 1.7 13 81-93 25-37 (53)
4 3pev_B Nucleoporin GLE1; RECA, 42.0 24 0.00083 29.0 4.0 34 100-133 35-70 (297)
5 1wwp_A Hypothetical protein TT 32.6 43 0.0015 23.2 3.5 31 104-138 36-69 (119)
6 2rrd_A BLM HRDC domain, HRDC d 32.3 3.3 0.00011 28.8 -2.4 35 81-117 2-36 (101)
7 1wty_A Hypothetical protein TT 30.6 77 0.0026 21.8 4.6 33 104-138 37-69 (119)
8 1lq7_A Alpha3W; three helix bu 26.9 36 0.0012 22.3 2.1 32 85-116 10-44 (67)
9 1ydi_B Alpha-actinin 4; cell a 25.9 38 0.0013 18.6 1.7 16 105-120 2-17 (26)
10 2jpc_A SSRB; DNA binding prote 24.3 78 0.0027 18.3 3.2 34 105-138 26-59 (61)
No 1
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=98.93 E-value=2.1e-10 Score=93.50 Aligned_cols=62 Identities=10% Similarity=0.219 Sum_probs=40.6
Q ss_pred CCCCCCCCCHHHHHHHhhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhc
Q psy7794 74 SKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENI 137 (139)
Q Consensus 74 Sr~GG~YIpp~kl~~~~~~~~d~~s~eyQR~~We~LkksInglvNkvn~sNI~~iv~ELF~eNl 137 (139)
.+++|+|+||++.+.++.+..+.++ .|+..|++|+|+|+|++||||.+|+..|+.+|+..|+
T Consensus 3 ~~s~~~w~P~~~~~~~~~~~~~~~~--~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~ 64 (284)
T 2vso_E 3 VPSANRWVPKFKSKKTEKKLAPDGK--TELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIAN 64 (284)
T ss_dssp ----CCCCCC-----------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCChhhhcccccccCCCcc--cccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 4688999999999887655433222 2788999999999999999999999999999999876
No 2
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=85.09 E-value=0.39 Score=38.11 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhhhcc--CCcHHHHHHHHHHh
Q psy7794 106 WETLKKSIHGSVNKVN--TGNIGIIARKLFQE 135 (139)
Q Consensus 106 We~LkksInglvNkvn--~sNI~~iv~ELF~e 135 (139)
=+.|++.++|++||++ .+|...++.+++..
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~ 47 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAET 47 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHH
Confidence 4679999999999999 99999999887764
No 3
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=43.30 E-value=11 Score=24.23 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=11.5
Q ss_pred CCHHHHHHHhhhc
Q psy7794 81 IPPAKLKLMQQSI 93 (139)
Q Consensus 81 Ipp~kl~~~~~~~ 93 (139)
+||.||.+||+=.
T Consensus 25 vp~~KL~aLq~VL 37 (53)
T 1zl8_A 25 VNNAKLASLQQVL 37 (53)
T ss_dssp STHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999854
No 4
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=41.97 E-value=24 Score=29.00 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCC--cHHHHHHHHH
Q psy7794 100 EYQRISWETLKKSIHGSVNKVNTG--NIGIIARKLF 133 (139)
Q Consensus 100 eyQR~~We~LkksInglvNkvn~s--NI~~iv~ELF 133 (139)
.-=+..|-++||.||..||.++.+ .|..|..+|-
T Consensus 35 ~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~ 70 (297)
T 3pev_B 35 VNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELT 70 (297)
T ss_dssp HHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHH
Confidence 456888999999999999999744 4555555443
No 5
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=32.61 E-value=43 Score=23.20 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=26.3
Q ss_pred HHHHHHHHHH---hhhhhhccCCcHHHHHHHHHHhhcC
Q psy7794 104 ISWETLKKSI---HGSVNKVNTGNIGIIARKLFQENIF 138 (139)
Q Consensus 104 ~~We~LkksI---nglvNkvn~sNI~~iv~ELF~eNli 138 (139)
.+|+.+|.-+ .|+ .+..-++++.++|+.+||
T Consensus 36 lawk~~k~~l~~~~g~----~~~s~rd~~r~a~~~glI 69 (119)
T 1wwp_A 36 AFWKALQAYLREKEGL----EGASPKGVIRLAREVGLL 69 (119)
T ss_dssp HHHHHHHHHHHHHHCC----CCCSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHcCCC
Confidence 5899999888 553 488999999999999987
No 6
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=32.31 E-value=3.3 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=20.9
Q ss_pred CCHHHHHHHhhhccCCCchHHHHHHHHHHHHHHhhhh
Q psy7794 81 IPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSV 117 (139)
Q Consensus 81 Ipp~kl~~~~~~~~d~~s~eyQR~~We~LkksInglv 117 (139)
|||||.+++...++. ..+++..-|++|+.-=..+-
T Consensus 2 ~~~~~~~~~~~~~s~--~~e~~~~l~~~L~~wR~~~A 36 (101)
T 2rrd_A 2 IPEFKQKALVAKVSQ--REEMVKKCLGELTEVCKSLG 36 (101)
T ss_dssp CCCCSCSSCCCSSSH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHhhccccc--ccHHHHHHHHHHHHHHHHHH
Confidence 788887755443332 25677777777765444333
No 7
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=30.63 E-value=77 Score=21.79 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhcC
Q psy7794 104 ISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIF 138 (139)
Q Consensus 104 ~~We~LkksInglvNkvn~sNI~~iv~ELF~eNli 138 (139)
.+|+.+|.-+.. ..+.+..-++++.++|+.+||
T Consensus 37 lawk~~k~~l~~--~g~~~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 37 LAWKTLKTFLEL--QGLEARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp HHHHHHHHHHHH--HTCCCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHH--cCCCCCCHHHHHHHHHHcCCC
Confidence 689999988843 344689999999999999987
No 8
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=26.93 E-value=36 Score=22.30 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=21.0
Q ss_pred HHHHHhhhcc---CCCchHHHHHHHHHHHHHHhhh
Q psy7794 85 KLKLMQQSIS---DKSSVEYQRISWETLKKSIHGS 116 (139)
Q Consensus 85 kl~~~~~~~~---d~~s~eyQR~~We~LkksIngl 116 (139)
|.+++.+.+. .-.-.|--+..|+.|||.|..+
T Consensus 10 kvkaleekvkalggggrieelkkkweelkkkieel 44 (67)
T 1lq7_A 10 KVKALEEKVKALGGGGRIEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Confidence 4455554332 3344566788999999999865
No 9
>1ydi_B Alpha-actinin 4; cell adhesion, structural protein; 1.80A {Homo sapiens}
Probab=25.88 E-value=38 Score=18.57 Aligned_cols=16 Identities=38% Similarity=0.769 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhhc
Q psy7794 105 SWETLKKSIHGSVNKV 120 (139)
Q Consensus 105 ~We~LkksInglvNkv 120 (139)
.||.|.-.|..-+|.+
T Consensus 2 ~WeqL~t~~~r~~nei 17 (26)
T 1ydi_B 2 GWEQLLTTIARTINEV 17 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5999888887777654
No 10
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.32 E-value=78 Score=18.28 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhcC
Q psy7794 105 SWETLKKSIHGSVNKVNTGNIGIIARKLFQENIF 138 (139)
Q Consensus 105 ~We~LkksInglvNkvn~sNI~~iv~ELF~eNli 138 (139)
+-...+..+..+..|+...|-.+.+.-.++.+++
T Consensus 26 s~~tV~~~~~~~~~kl~~~~~~~l~~~~~~~g~~ 59 (61)
T 2jpc_A 26 SIKTVETHRMNMMRKLQVHKVTELLNCARRMRLI 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSCCC
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 4566788889999999999999999988877765
Done!