Query psy7794
Match_columns 139
No_of_seqs 211 out of 297
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 19:00:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7794.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7794hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 42.6 5.5 0.0004 23.9 1.7 13 81-93 22-34 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 37.4 7.4 0.00054 23.8 1.7 13 81-93 23-35 (57)
3 d1fsea_ a.4.6.2 (A:) Germinati 32.6 26 0.0019 20.4 3.7 36 104-139 31-66 (67)
4 d1l3la1 a.4.6.2 (A:170-234) Qu 23.5 42 0.003 19.3 3.5 57 82-138 6-65 (65)
5 d1p4wa_ a.4.6.2 (A:) Transcrip 23.3 26 0.0019 21.6 2.6 39 100-138 45-83 (87)
6 d1wtya_ a.24.16.2 (A:) Probabl 17.9 87 0.0064 20.5 4.6 33 104-138 36-68 (116)
7 d1asha_ a.1.1.2 (A:) Ascaris h 15.7 50 0.0037 21.7 2.9 21 99-119 127-147 (147)
8 d1joga_ a.24.16.2 (A:) Hypothe 14.9 1E+02 0.0073 20.6 4.3 35 104-138 50-87 (135)
9 d1qnta1 a.4.2.1 (A:92-176) O6- 14.7 30 0.0022 21.8 1.3 12 100-111 2-14 (85)
10 d1mgta1 a.4.2.1 (A:89-169) O6- 13.2 41 0.003 21.0 1.7 15 100-114 3-17 (81)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=42.59 E-value=5.5 Score=23.87 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=11.5
Q ss_pred CCHHHHHHHhhhc
Q psy7794 81 IPPAKLKLMQQSI 93 (139)
Q Consensus 81 Ipp~kl~~~~~~~ 93 (139)
|||.||.+||+=.
T Consensus 22 vp~~KL~aLqkVL 34 (50)
T d1zl8a1 22 VNNAKLASLQQVL 34 (50)
T ss_dssp STHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 9999999999854
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.39 E-value=7.4 Score=23.84 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=11.3
Q ss_pred CCHHHHHHHhhhc
Q psy7794 81 IPPAKLKLMQQSI 93 (139)
Q Consensus 81 Ipp~kl~~~~~~~ 93 (139)
+||.||.+||+=.
T Consensus 23 vp~~KL~aLqkVL 35 (57)
T d1y74a1 23 LPPQKLQALQRVL 35 (57)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 8999999998743
No 3
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=32.65 E-value=26 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhcCC
Q psy7794 104 ISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD 139 (139)
Q Consensus 104 ~~We~LkksInglvNkvn~sNI~~iv~ELF~eNlir 139 (139)
.+-...+..+..+..|+++.|-.+.+....+..+|+
T Consensus 31 is~~TV~~~~~~i~~Kl~v~~r~~lv~~a~~~Gli~ 66 (67)
T d1fsea_ 31 ISEKTVRNHISNAMQKLGVKGRSQAVVELLRMGELE 66 (67)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHccCcc
Confidence 456778899999999999999999999999988874
No 4
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=23.55 E-value=42 Score=19.31 Aligned_cols=57 Identities=5% Similarity=0.213 Sum_probs=39.3
Q ss_pred CHHHHHHHhhhccCCCchH---HHHHHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhcC
Q psy7794 82 PPAKLKLMQQSISDKSSVE---YQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIF 138 (139)
Q Consensus 82 pp~kl~~~~~~~~d~~s~e---yQR~~We~LkksInglvNkvn~sNI~~iv~ELF~eNli 138 (139)
.|--++-++--....+..| ---.+....+..+..+..|+++.|-.+.+.-..+..||
T Consensus 6 t~rE~~vl~l~~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv~~r~~l~~~a~~~glI 65 (65)
T d1l3la1 6 DPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 65 (65)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCC
Confidence 3433333333333344443 23356788999999999999999999999988887765
No 5
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=23.28 E-value=26 Score=21.59 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhcC
Q psy7794 100 EYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIF 138 (139)
Q Consensus 100 eyQR~~We~LkksInglvNkvn~sNI~~iv~ELF~eNli 138 (139)
+.--.+....+..+..+..|+++.|-.+.+......+|+
T Consensus 45 ~~l~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~gl~ 83 (87)
T d1p4wa_ 45 KKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMT 83 (87)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCS
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCC
Confidence 344456788999999999999999999999988888775
No 6
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]}
Probab=17.87 E-value=87 Score=20.48 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhcC
Q psy7794 104 ISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIF 138 (139)
Q Consensus 104 ~~We~LkksInglvNkvn~sNI~~iv~ELF~eNli 138 (139)
++|..||+-+.. .-+.+..=+.++++.|+..||
T Consensus 36 l~WK~lK~~L~~--~g~~~~spr~~~r~A~~~glI 68 (116)
T d1wtya_ 36 LAWKTLKTFLEL--QGLEARSPRAAIRGAFQVGLL 68 (116)
T ss_dssp HHHHHHHHHHHH--HTCCCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHH--cCCccCCHHHHHHHHHHcCCC
Confidence 689999998852 235677889999999999887
No 7
>d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=15.66 E-value=50 Score=21.71 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhh
Q psy7794 99 VEYQRISWETLKKSIHGSVNK 119 (139)
Q Consensus 99 ~eyQR~~We~LkksInglvNk 119 (139)
.+.++.+|.+|-+-|+..++|
T Consensus 127 ~~~~~~AW~~l~~~~~~~~~k 147 (147)
T d1asha_ 127 DEPTKQAWHEIGREFAKEINK 147 (147)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHcC
Confidence 477899999999999988765
No 8
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]}
Probab=14.87 E-value=1e+02 Score=20.61 Aligned_cols=35 Identities=11% Similarity=0.297 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhh-h--hhccCCcHHHHHHHHHHhhcC
Q psy7794 104 ISWETLKKSIHGS-V--NKVNTGNIGIIARKLFQENIF 138 (139)
Q Consensus 104 ~~We~LkksIngl-v--Nkvn~sNI~~iv~ELF~eNli 138 (139)
++|..||+-+..- + +.+...--++++++.|+.+||
T Consensus 50 laWK~lK~~L~~~g~~~~~~~~~spr~~~r~A~~~glI 87 (135)
T d1joga_ 50 LSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLI 87 (135)
T ss_dssp HHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHcCCC
Confidence 6898888887644 2 355666889999999999886
No 9
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.66 E-value=30 Score=21.76 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=9.7
Q ss_pred HHHHHH-HHHHHH
Q psy7794 100 EYQRIS-WETLKK 111 (139)
Q Consensus 100 eyQR~~-We~Lkk 111 (139)
.|||+. |++|++
T Consensus 2 ~F~~~~vw~~l~~ 14 (85)
T d1qnta1 2 SFTRQVLWKLLKV 14 (85)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhc
Confidence 588885 999985
No 10
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=13.22 E-value=41 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy7794 100 EYQRISWETLKKSIH 114 (139)
Q Consensus 100 eyQR~~We~LkksIn 114 (139)
+||+.-|++|-++|-
T Consensus 3 ~Fq~~V~~~l~~~IP 17 (81)
T d1mgta1 3 PFEKKVYEWLTKNVK 17 (81)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHhCC
Confidence 699999999977664
Done!