Your job contains 1 sequence.
>psy7794
MEGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQKTENESKP
ESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKV
NTGNIGIIARKLFQENIFD
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7794
(139 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086707 - symbol:ncm "nucampholin" species:7227 "D... 252 4.3e-20 1
UNIPROTKB|F1MWG3 - symbol:CWC22 "Uncharacterized protein"... 238 7.7e-19 1
UNIPROTKB|F1RYP5 - symbol:CWC22 "Uncharacterized protein"... 238 7.7e-19 1
UNIPROTKB|J9P9J1 - symbol:CWC22 "Uncharacterized protein"... 238 7.8e-19 1
UNIPROTKB|E2RIF6 - symbol:CWC22 "Uncharacterized protein"... 238 7.9e-19 1
MGI|MGI:2136773 - symbol:Cwc22 "CWC22 spliceosome-associa... 235 1.6e-18 1
UNIPROTKB|B7WP74 - symbol:CWC22 "Pre-mRNA-splicing factor... 232 2.5e-18 1
RGD|1565385 - symbol:Cwc22 "CWC22 spliceosome-associated ... 232 3.4e-18 1
UNIPROTKB|B7WP27 - symbol:CWC22 "Pre-mRNA-splicing factor... 232 3.4e-18 1
UNIPROTKB|Q9HCG8 - symbol:CWC22 "Pre-mRNA-splicing factor... 232 3.4e-18 1
UNIPROTKB|Q5RA93 - symbol:CWC22 "Pre-mRNA-splicing factor... 232 3.4e-18 1
UNIPROTKB|Q52KN9 - symbol:cwc22 "Pre-mRNA-splicing factor... 231 3.6e-18 1
WB|WBGene00002957 - symbol:let-858 species:6239 "Caenorha... 231 4.3e-18 1
UNIPROTKB|Q17336 - symbol:let-858 "Pre-mRNA-splicing fact... 231 4.3e-18 1
UNIPROTKB|Q5ZKA3 - symbol:CWC22 "Pre-mRNA-splicing factor... 222 5.5e-18 2
ZFIN|ZDB-GENE-060929-452 - symbol:cwc22 "CWC22 spliceosom... 230 6.3e-18 1
RGD|1590641 - symbol:LOC680519 "similar to CG12750-PA" sp... 223 7.8e-18 1
UNIPROTKB|E9PU74 - symbol:LOC500684 "Protein LOC500684" s... 227 1.1e-17 1
UNIPROTKB|F1NI57 - symbol:CWC22 "Pre-mRNA-splicing factor... 220 6.0e-17 1
ASPGD|ASPL0000053315 - symbol:AN0289 species:162425 "Emer... 204 3.2e-15 1
POMBASE|SPBC13E7.01 - symbol:cwf22 "splicing factor Cwf22... 201 6.8e-15 1
TAIR|locus:2025797 - symbol:AT1G80930 "AT1G80930" species... 201 7.0e-15 1
DICTYBASE|DDB_G0267796 - symbol:DDB_G0267796 "initiation ... 195 3.2e-14 1
GENEDB_PFALCIPARUM|PFL1855w - symbol:PFL1855w "cell cycle... 149 2.7e-09 1
UNIPROTKB|Q8I540 - symbol:PFL1855w "Cell cycle control pr... 149 2.7e-09 1
TAIR|locus:504956291 - symbol:AT1G52325 "AT1G52325" speci... 101 1.5e-05 1
>FB|FBgn0086707 [details] [associations]
symbol:ncm "nucampholin" species:7227 "Drosophila
melanogaster" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0006911 SUPFAM:SSF48371
EMBL:AE014134 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
GeneTree:ENSGT00650000093379 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:AY061596
EMBL:AY089504 EMBL:BT100034 EMBL:BT031132 RefSeq:NP_609877.2
UniGene:Dm.11546 ProteinModelPortal:Q9VJ87 MINT:MINT-1003368
STRING:Q9VJ87 PaxDb:Q9VJ87 EnsemblMetazoa:FBtr0081088 GeneID:35099
KEGG:dme:Dmel_CG12750 CTD:35099 FlyBase:FBgn0086707
InParanoid:Q9VJ87 OMA:ETEDILN OrthoDB:EOG48GTJG PhylomeDB:Q9VJ87
GenomeRNAi:35099 NextBio:791857 Bgee:Q9VJ87 Uniprot:Q9VJ87
Length = 1330
Score = 252 (93.8 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 49/103 (47%), Positives = 65/103 (63%)
Query: 35 SGRKDQRDSTKQTPQNKQXXXXXXXXXXXXXXXXXNILSSKTGGAYIPPAKLKLMQQSIS 94
S + + T +T + + ++L+S+TGGAYIPPAKL++MQ I+
Sbjct: 345 SSKTPRHTETTETNADNETVTEPAAKITERQRKTVDVLTSRTGGAYIPPAKLRMMQSQIT 404
Query: 95 DKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENI 137
DKSS YQRI+WE LKKSIHG +NKVN NI II R+L +ENI
Sbjct: 405 DKSSAAYQRIAWEALKKSIHGYINKVNVTNIAIITRELLRENI 447
Score = 136 (52.9 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 3 GVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTP 48
G+FP+DNP+NTRF+INFFTSIGLGGLT D R+ +++ K P
Sbjct: 870 GLFPKDNPRNTRFSINFFTSIGLGGLT----DDLRRFLKNAPKSVP 911
>UNIPROTKB|F1MWG3 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 GO:GO:0071013 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:DAAA02004113
IPI:IPI00708801 Ensembl:ENSBTAT00000028962 Uniprot:F1MWG3
Length = 899
Score = 238 (88.8 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 44/66 (66%), Positives = 57/66 (86%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NIGII ++
Sbjct: 123 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 182
Query: 132 LFQENI 137
L QENI
Sbjct: 183 LLQENI 188
Score = 137 (53.3 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLT 29
EG+ PRDNP+NTRFAINFFTSIGLGGLT
Sbjct: 611 EGLLPRDNPRNTRFAINFFTSIGLGGLT 638
>UNIPROTKB|F1RYP5 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 GO:GO:0071013 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:CU855527
Ensembl:ENSSSCT00000017430 Uniprot:F1RYP5
Length = 904
Score = 238 (88.8 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 44/66 (66%), Positives = 57/66 (86%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NIGII ++
Sbjct: 124 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 183
Query: 132 LFQENI 137
L QENI
Sbjct: 184 LLQENI 189
Score = 137 (53.3 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLT 29
EG+ PRDNP+NTRFAINFFTSIGLGGLT
Sbjct: 612 EGLLPRDNPRNTRFAINFFTSIGLGGLT 639
>UNIPROTKB|J9P9J1 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 CTD:57703
EMBL:AAEX03017820 EMBL:AAEX03017821 RefSeq:XP_545549.2
Ensembl:ENSCAFT00000049152 GeneID:488427 KEGG:cfa:488427
Uniprot:J9P9J1
Length = 908
Score = 238 (88.8 bits), Expect = 7.8e-19, P = 7.8e-19
Identities = 44/66 (66%), Positives = 57/66 (86%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NIGII ++
Sbjct: 125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 184
Query: 132 LFQENI 137
L QENI
Sbjct: 185 LLQENI 190
Score = 137 (53.3 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLT 29
EG+ PRDNP+NTRFAINFFTSIGLGGLT
Sbjct: 613 EGLLPRDNPRNTRFAINFFTSIGLGGLT 640
>UNIPROTKB|E2RIF6 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:AAEX03017820
EMBL:AAEX03017821 Ensembl:ENSCAFT00000022474 Uniprot:E2RIF6
Length = 914
Score = 238 (88.8 bits), Expect = 7.9e-19, P = 7.9e-19
Identities = 44/66 (66%), Positives = 57/66 (86%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NIGII ++
Sbjct: 124 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 183
Query: 132 LFQENI 137
L QENI
Sbjct: 184 LLQENI 189
Score = 137 (53.3 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLT 29
EG+ PRDNP+NTRFAINFFTSIGLGGLT
Sbjct: 614 EGLLPRDNPRNTRFAINFFTSIGLGGLT 641
>MGI|MGI:2136773 [details] [associations]
symbol:Cwc22 "CWC22 spliceosome-associated protein homolog
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 MGI:MGI:2136773
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 OrthoDB:EOG4JM7P4 ChiTaRS:CWC22 EMBL:AK045589
EMBL:AK132001 EMBL:AK077961 EMBL:AK149528 EMBL:BC003993
IPI:IPI00756701 IPI:IPI00757147 RefSeq:NP_085037.2
RefSeq:NP_766255.1 UniGene:Mm.288151 ProteinModelPortal:Q8C5N3
PhosphoSite:Q8C5N3 PaxDb:Q8C5N3 PRIDE:Q8C5N3
Ensembl:ENSMUST00000065889 Ensembl:ENSMUST00000111818
Ensembl:ENSMUST00000111821 GeneID:80744 KEGG:mmu:80744
InParanoid:Q8C5N3 OMA:VENEERY NextBio:350099 Bgee:Q8C5N3
CleanEx:MM_BC003993 Genevestigator:Q8C5N3 Uniprot:Q8C5N3
Length = 908
Score = 235 (87.8 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 44/66 (66%), Positives = 56/66 (84%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DKSS+ YQR+SWE LKKSI+G +NKVN NI II ++
Sbjct: 123 LLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 182
Query: 132 LFQENI 137
L QENI
Sbjct: 183 LLQENI 188
Score = 140 (54.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQ 52
EG+ PRDNP+NTRFAINFFTSIGLGGLT + + + Q P+ +Q
Sbjct: 612 EGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQ 662
>UNIPROTKB|B7WP74 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
HOGENOM:HOG000212368 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 EMBL:AC068194 EMBL:AC096587 HGNC:HGNC:29322
ChiTaRS:CWC22 IPI:IPI00917297 ProteinModelPortal:B7WP74
STRING:B7WP74 Ensembl:ENST00000404136 ArrayExpress:B7WP74
Bgee:B7WP74 Uniprot:B7WP74
Length = 745
Score = 232 (86.7 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 43/66 (65%), Positives = 56/66 (84%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NI II ++
Sbjct: 125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 184
Query: 132 LFQENI 137
L QENI
Sbjct: 185 LLQENI 190
Score = 139 (54.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 37/115 (32%), Positives = 53/115 (46%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQXXXXXXXXX 61
EG+ PRDNP+NTRFAINFFTSIGLGGLT + + + Q P +Q
Sbjct: 613 EGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDVEQNKSSPSSSS 672
Query: 62 XXXXXXXXNILSSKTGGAYIPPAKLKLMQQSISDKSSVE-YQRISWETLKKSIHG 115
+ S + + + + + SD SS+ + S ++K HG
Sbjct: 673 SASSSSESDSSDSDSDSS---DSSSESSSEE-SDSSSISSHSSASANDVRKKGHG 723
>RGD|1565385 [details] [associations]
symbol:Cwc22 "CWC22 spliceosome-associated protein homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 RGD:1565385
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 IPI:IPI00382207
Ensembl:ENSRNOT00000037684 UCSC:RGD:1565385 ArrayExpress:F1LY38
Uniprot:F1LY38
Length = 905
Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 43/66 (65%), Positives = 56/66 (84%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NI II ++
Sbjct: 126 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 185
Query: 132 LFQENI 137
L QENI
Sbjct: 186 LLQENI 191
Score = 138 (53.6 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQ 52
EG+ PRDNP+NTRFAINFFTSIGLGGLT + + + Q P +Q
Sbjct: 614 EGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDAEQ 664
>UNIPROTKB|B7WP27 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 Gene3D:1.25.40.180 HOGENOM:HOG000212368
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
EMBL:AC068194 EMBL:AC096587 HGNC:HGNC:29322 ChiTaRS:CWC22
IPI:IPI00917297 ProteinModelPortal:B7WP27 STRING:B7WP27
Ensembl:ENST00000295749 HOVERGEN:HBG054017 ArrayExpress:B7WP27
Bgee:B7WP27 Uniprot:B7WP27
Length = 908
Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 43/66 (65%), Positives = 56/66 (84%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NI II ++
Sbjct: 125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 184
Query: 132 LFQENI 137
L QENI
Sbjct: 185 LLQENI 190
Score = 139 (54.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 37/115 (32%), Positives = 53/115 (46%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQXXXXXXXXX 61
EG+ PRDNP+NTRFAINFFTSIGLGGLT + + + Q P +Q
Sbjct: 613 EGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDVEQNKSSPSSSS 672
Query: 62 XXXXXXXXNILSSKTGGAYIPPAKLKLMQQSISDKSSVE-YQRISWETLKKSIHG 115
+ S + + + + + SD SS+ + S ++K HG
Sbjct: 673 SASSSSESDSSDSDSDSS---DSSSESSSEE-SDSSSISSHSSASANDVRKKGHG 723
>UNIPROTKB|Q9HCG8 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IC] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0048024 Gene3D:1.25.40.180 eggNOG:NOG293831
KO:K13100 OMA:SENFRRK InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 CTD:57703 OrthoDB:EOG4JM7P4 EMBL:AB046824
EMBL:AK025635 EMBL:AK026978 EMBL:AC068194 EMBL:AC096587
EMBL:BC016651 EMBL:BC031216 EMBL:BC053573 EMBL:BC057826
EMBL:BC093952 EMBL:BC093954 IPI:IPI00177381 RefSeq:NP_065994.1
UniGene:Hs.311363 ProteinModelPortal:Q9HCG8 IntAct:Q9HCG8
STRING:Q9HCG8 PhosphoSite:Q9HCG8 DMDM:296439380 PaxDb:Q9HCG8
PRIDE:Q9HCG8 Ensembl:ENST00000410053 GeneID:57703 KEGG:hsa:57703
UCSC:uc002unp.2 GeneCards:GC02M180809 H-InvDB:HIX0022794
HGNC:HGNC:29322 HPA:HPA036748 neXtProt:NX_Q9HCG8
PharmGKB:PA164718415 InParanoid:Q9HCG8 ChiTaRS:CWC22
GenomeRNAi:57703 NextBio:64575 ArrayExpress:Q9HCG8 Bgee:Q9HCG8
Genevestigator:Q9HCG8 Uniprot:Q9HCG8
Length = 908
Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 43/66 (65%), Positives = 56/66 (84%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NI II ++
Sbjct: 125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 184
Query: 132 LFQENI 137
L QENI
Sbjct: 185 LLQENI 190
Score = 139 (54.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 37/115 (32%), Positives = 53/115 (46%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQXXXXXXXXX 61
EG+ PRDNP+NTRFAINFFTSIGLGGLT + + + Q P +Q
Sbjct: 613 EGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDVEQNKSSPSSSS 672
Query: 62 XXXXXXXXNILSSKTGGAYIPPAKLKLMQQSISDKSSVE-YQRISWETLKKSIHG 115
+ S + + + + + SD SS+ + S ++K HG
Sbjct: 673 SASSSSESDSSDSDSDSS---DSSSESSSEE-SDSSSISSHSSASANDVRKKGHG 723
>UNIPROTKB|Q5RA93 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9601 "Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 EMBL:CR859125 RefSeq:NP_001125780.1 UniGene:Pab.19070
ProteinModelPortal:Q5RA93 GeneID:100172707 KEGG:pon:100172707
InParanoid:Q5RA93 Uniprot:Q5RA93
Length = 908
Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 43/66 (65%), Positives = 56/66 (84%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN NI II ++
Sbjct: 125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 184
Query: 132 LFQENI 137
L QENI
Sbjct: 185 LLQENI 190
Score = 139 (54.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 37/115 (32%), Positives = 53/115 (46%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQXXXXXXXXX 61
EG+ PRDNP+NTRFAINFFTSIGLGGLT + + + Q P +Q
Sbjct: 613 EGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDVEQNKSSPSSSS 672
Query: 62 XXXXXXXXNILSSKTGGAYIPPAKLKLMQQSISDKSSVE-YQRISWETLKKSIHG 115
+ S + + + + + SD SS+ + S ++K HG
Sbjct: 673 SASSSSESDSSDSDSDSS---DSSSESSSEE-SDSSSISSHSSASANDVRKKGHG 723
>UNIPROTKB|Q52KN9 [details] [associations]
symbol:cwc22 "Pre-mRNA-splicing factor CWC22 homolog"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 CTD:57703 EMBL:BC094259
RefSeq:NP_001089418.1 UniGene:Xl.41789 ProteinModelPortal:Q52KN9
GeneID:734468 KEGG:xla:734468 Xenbase:XB-GENE-1010542
Uniprot:Q52KN9
Length = 803
Score = 231 (86.4 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 74 SKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLF 133
++TGGAYIPPA+L++MQ+ I+DKSS+ YQR+SWE LKKSI+G VNKVN NIG I ++L
Sbjct: 174 TRTGGAYIPPARLRMMQEQITDKSSMAYQRMSWEALKKSINGLVNKVNVSNIGNIIQELL 233
Query: 134 QENI 137
QENI
Sbjct: 234 QENI 237
Score = 135 (52.6 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 29/51 (56%), Positives = 35/51 (68%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQ 52
+G+ P DNPKNTRFAINFFTSIGLGGLT D R+ +++ K KQ
Sbjct: 660 QGLLPMDNPKNTRFAINFFTSIGLGGLT----DELREHLKNAPKMIMTQKQ 706
>WB|WBGene00002957 [details] [associations]
symbol:let-858 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0007281
"germ cell development" evidence=IMP] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0009792 GO:GO:0040007 GO:GO:0005654 SUPFAM:SSF48371
GO:GO:0002119 GO:GO:0008380 GO:GO:0003677 GO:GO:0018996
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 GO:GO:0000790
GO:GO:0007369 Gene3D:1.25.40.180 GO:GO:0042078 EMBL:U19615
EMBL:Z81525 PIR:T21688 RefSeq:NP_496363.1 UniGene:Cel.5489
ProteinModelPortal:Q17336 DIP:DIP-26173N IntAct:Q17336
MINT:MINT-1105983 STRING:Q17336 PaxDb:Q17336
EnsemblMetazoa:F33A8.1.1 EnsemblMetazoa:F33A8.1.2 GeneID:174689
KEGG:cel:CELE_F33A8.1 UCSC:F33A8.1.1 CTD:174689 WormBase:F33A8.1
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368
InParanoid:Q17336 KO:K13100 OMA:SENFRRK NextBio:885078
GO:GO:0043073 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 Uniprot:Q17336
Length = 897
Score = 231 (86.4 bits), Expect = 4.3e-18, P = 4.3e-18
Identities = 43/68 (63%), Positives = 55/68 (80%)
Query: 70 NILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIA 129
+IL ++TGGAYIPPAKL+LMQQ ISDK S +YQR++WE +KK IHG VN+VN N+ I
Sbjct: 154 DILRTRTGGAYIPPAKLRLMQQQISDKQSEQYQRMNWERMKKKIHGLVNRVNAKNLVQIV 213
Query: 130 RKLFQENI 137
R+L QEN+
Sbjct: 214 RELLQENV 221
Score = 111 (44.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 3 GVFPRDNPKNTRFAINFFTSIGLGGLT 29
G+FPR NP + RF+INFFT IGLGGLT
Sbjct: 645 GLFPRTNPNSARFSINFFTMIGLGGLT 671
Score = 33 (16.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 30 RYYGDSGRKDQRDSTKQ 46
R+ D RK +RD +++
Sbjct: 864 RHDSDDDRKTRRDRSEE 880
>UNIPROTKB|Q17336 [details] [associations]
symbol:let-858 "Pre-mRNA-splicing factor CWC22 homolog"
species:6239 "Caenorhabditis elegans" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0009792 GO:GO:0040007
GO:GO:0005654 SUPFAM:SSF48371 GO:GO:0002119 GO:GO:0008380
GO:GO:0003677 GO:GO:0018996 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0000790 GO:GO:0007369 Gene3D:1.25.40.180
GO:GO:0042078 EMBL:U19615 EMBL:Z81525 PIR:T21688 RefSeq:NP_496363.1
UniGene:Cel.5489 ProteinModelPortal:Q17336 DIP:DIP-26173N
IntAct:Q17336 MINT:MINT-1105983 STRING:Q17336 PaxDb:Q17336
EnsemblMetazoa:F33A8.1.1 EnsemblMetazoa:F33A8.1.2 GeneID:174689
KEGG:cel:CELE_F33A8.1 UCSC:F33A8.1.1 CTD:174689 WormBase:F33A8.1
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368
InParanoid:Q17336 KO:K13100 OMA:SENFRRK NextBio:885078
GO:GO:0043073 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 Uniprot:Q17336
Length = 897
Score = 231 (86.4 bits), Expect = 4.3e-18, P = 4.3e-18
Identities = 43/68 (63%), Positives = 55/68 (80%)
Query: 70 NILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIA 129
+IL ++TGGAYIPPAKL+LMQQ ISDK S +YQR++WE +KK IHG VN+VN N+ I
Sbjct: 154 DILRTRTGGAYIPPAKLRLMQQQISDKQSEQYQRMNWERMKKKIHGLVNRVNAKNLVQIV 213
Query: 130 RKLFQENI 137
R+L QEN+
Sbjct: 214 RELLQENV 221
Score = 111 (44.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 3 GVFPRDNPKNTRFAINFFTSIGLGGLT 29
G+FPR NP + RF+INFFT IGLGGLT
Sbjct: 645 GLFPRTNPNSARFSINFFTMIGLGGLT 671
Score = 33 (16.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 30 RYYGDSGRKDQRDSTKQ 46
R+ D RK +RD +++
Sbjct: 864 RHDSDDDRKTRRDRSEE 880
>UNIPROTKB|Q5ZKA3 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
EMBL:AJ720181 IPI:IPI00584173 RefSeq:NP_001026421.1
UniGene:Gga.22423 ProteinModelPortal:Q5ZKA3 STRING:Q5ZKA3
GeneID:424123 KEGG:gga:424123 CTD:57703 InParanoid:Q5ZKA3
OrthoDB:EOG4JM7P4 NextBio:20826498 Uniprot:Q5ZKA3
Length = 926
Score = 222 (83.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 74 SKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLF 133
++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G VNKVN NI I +L
Sbjct: 133 TRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLVNKVNVSNIENIIHELL 192
Query: 134 QENI 137
QENI
Sbjct: 193 QENI 196
Score = 141 (54.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 30/51 (58%), Positives = 36/51 (70%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQ 52
EG+ PRDNP+NTRFAINFFTSIGLGGLT D R+ +++ K KQ
Sbjct: 616 EGLLPRDNPRNTRFAINFFTSIGLGGLT----DELREHLKNAPKMIMTQKQ 662
Score = 34 (17.0 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 30 RYYGDSGRKDQRDSTKQ 46
R Y D R DQ S ++
Sbjct: 45 RRYSDDSRYDQEYSRRE 61
>ZFIN|ZDB-GENE-060929-452 [details] [associations]
symbol:cwc22 "CWC22 spliceosome-associated protein
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
ZFIN:ZDB-GENE-060929-452 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 OrthoDB:EOG4JM7P4 EMBL:BC124357 IPI:IPI00491845
RefSeq:NP_001071037.1 UniGene:Dr.74197 ProteinModelPortal:Q08C72
GeneID:566033 KEGG:dre:566033 InParanoid:Q08C72 NextBio:20887991
ArrayExpress:Q08C72 Uniprot:Q08C72
Length = 985
Score = 230 (86.0 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 43/64 (67%), Positives = 54/64 (84%)
Query: 74 SKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLF 133
++TGGAYIPPAKL++MQ I+DKSS+EYQR+SWE LKKSI+G +NKVN NI I ++L
Sbjct: 221 TRTGGAYIPPAKLRMMQAQITDKSSLEYQRMSWEALKKSINGLINKVNVSNIANIIQELL 280
Query: 134 QENI 137
QENI
Sbjct: 281 QENI 284
Score = 144 (55.7 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQT-PQNKQ 52
EG+FPRDNP+NTRFAINFFTSIGLGGLT D R+ +++ K QN++
Sbjct: 707 EGLFPRDNPRNTRFAINFFTSIGLGGLT----DELREHLKNAPKMIMTQNQE 754
>RGD|1590641 [details] [associations]
symbol:LOC680519 "similar to CG12750-PA" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 RGD:1590641
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379 OrthoDB:EOG4JM7P4
IPI:IPI00766583 Ensembl:ENSRNOT00000058354 UCSC:RGD:1590641
Uniprot:D3ZEL0
Length = 453
Score = 223 (83.6 bits), Expect = 7.8e-18, P = 7.8e-18
Identities = 41/66 (62%), Positives = 56/66 (84%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I++K+S+ YQR+SWE +KKSI+G +NKVN NI II ++
Sbjct: 126 LLTRTGGAYIPPAKLRMMQEQITEKTSLAYQRMSWEAMKKSINGLINKVNICNISIIIQE 185
Query: 132 LFQENI 137
L QENI
Sbjct: 186 LLQENI 191
>UNIPROTKB|E9PU74 [details] [associations]
symbol:LOC500684 "Protein LOC500684" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
IPI:IPI00765240 Ensembl:ENSRNOT00000036640 RGD:1562981 OMA:SHENSYS
Uniprot:E9PU74
Length = 879
Score = 227 (85.0 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 43/66 (65%), Positives = 55/66 (83%)
Query: 72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
L ++TGGAYIPPAKL++MQ+ I DK+S+ YQR+SWE LKKSI+G +NKVN NI II ++
Sbjct: 122 LLTRTGGAYIPPAKLRMMQEQIMDKNSLAYQRMSWEALKKSINGLINKVNICNISIIIQE 181
Query: 132 LFQENI 137
L QENI
Sbjct: 182 LLQENI 187
Score = 132 (51.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLT 29
EG+ PR+NP+NTRFAINFFTSIGLGGLT
Sbjct: 588 EGLLPRNNPRNTRFAINFFTSIGLGGLT 615
Score = 32 (16.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 34 DSGRKDQRDSTKQT 47
+ GR+DQR +T
Sbjct: 719 EGGREDQRHQEGRT 732
>UNIPROTKB|F1NI57 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
GO:GO:0071013 Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
IPI:IPI00584173 EMBL:AADN02019987 Ensembl:ENSGALT00000014643
OMA:DESNGRD Uniprot:F1NI57
Length = 854
Score = 220 (82.5 bits), Expect = 6.0e-17, P = 6.0e-17
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 74 SKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLF 133
++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G VNKVN NI I +L
Sbjct: 61 TRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLVNKVNVSNIENIIYELL 120
Query: 134 QENI 137
QENI
Sbjct: 121 QENI 124
Score = 141 (54.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/51 (58%), Positives = 36/51 (70%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQ 52
EG+ PRDNP+NTRFAINFFTSIGLGGLT D R+ +++ K KQ
Sbjct: 544 EGLLPRDNPRNTRFAINFFTSIGLGGLT----DELREHLKNAPKMIMTQKQ 590
>ASPGD|ASPL0000053315 [details] [associations]
symbol:AN0289 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0005737 SUPFAM:SSF48371
GO:GO:0008380 EMBL:BN001308 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 EMBL:AACD01000005
eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 RefSeq:XP_657893.1
STRING:Q5BGP1 GeneID:2876063 KEGG:ani:AN0289.2 OrthoDB:EOG4KPXKV
Uniprot:Q5BGP1
Length = 868
Score = 204 (76.9 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 37/67 (55%), Positives = 52/67 (77%)
Query: 71 ILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIAR 130
+L+ ++GG YIPPA+L+ +Q I+DK+S EYQR++WE LKKSI+G +NKVN NI I
Sbjct: 106 LLNMRSGGTYIPPARLRALQAQITDKTSKEYQRMAWEALKKSINGLINKVNVSNIKYIVP 165
Query: 131 KLFQENI 137
+LF EN+
Sbjct: 166 ELFGENL 172
Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLT 29
EG+FP DNP+NTRF+IN+FTSIG G LT
Sbjct: 586 EGLFPTDNPRNTRFSINYFTSIGFGVLT 613
>POMBASE|SPBC13E7.01 [details] [associations]
symbol:cwf22 "splicing factor Cwf22" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 PomBase:SPBC13E7.01 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 GO:GO:0045292 eggNOG:NOG293831 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
OrthoDB:EOG4KPXKV EMBL:D89100 PIR:T39492 IntAct:Q9P6R9
STRING:Q9P6R9 KEGG:spo:SPBC13E7.01 NextBio:20801084 Uniprot:Q9P6R9
Length = 887
Score = 201 (75.8 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 37/67 (55%), Positives = 51/67 (76%)
Query: 71 ILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIAR 130
++ +++GG YIPPAKLK +Q ++D ++ EYQR+ WE LKKSI+G +NKVN NI I
Sbjct: 85 LMETRSGGTYIPPAKLKALQAQLTDVNTPEYQRMQWEALKKSINGLINKVNKSNIRDIIP 144
Query: 131 KLFQENI 137
+LFQENI
Sbjct: 145 ELFQENI 151
Score = 101 (40.6 bits), Expect = 0.00033, P = 0.00033
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 1 MEGVFPRDNPKNTRFAINFFTSIGLGGLT 29
+ G+FP D +N RF+IN+FTSIGLG LT
Sbjct: 569 LHGLFPVDEARNVRFSINYFTSIGLGALT 597
>TAIR|locus:2025797 [details] [associations]
symbol:AT1G80930 "AT1G80930" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006412 "translation" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 EMBL:CP002684
GO:GO:0005829 GO:GO:0005634 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 EMBL:AC011713
HOGENOM:HOG000212368 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 EMBL:AY139757 EMBL:BT004547
IPI:IPI00532679 PIR:C96842 RefSeq:NP_178208.1 UniGene:At.43915
ProteinModelPortal:Q9SAG7 STRING:Q9SAG7 PRIDE:Q9SAG7
EnsemblPlants:AT1G80930.1 GeneID:844433 KEGG:ath:AT1G80930
TAIR:At1g80930 InParanoid:Q9SAG7 OMA:DGHENGS PhylomeDB:Q9SAG7
ProtClustDB:CLSN2682123 Genevestigator:Q9SAG7 Uniprot:Q9SAG7
Length = 900
Score = 201 (75.8 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 44/106 (41%), Positives = 57/106 (53%)
Query: 32 YGDSGRKDQRDSTKQTPQNKQXXXXXXXXXXXXXXXXXNILSSKTGGAYIPPAKLKLMQQ 91
Y DS R R + + K+ + KTGG YIPP KL M +
Sbjct: 285 YDDSQRDKLRKEDSRKREEKKIEVPKPKLAELNPSENNAMALGKTGGVYIPPFKLARMMK 344
Query: 92 SISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENI 137
+ DKSSVEYQR++W+ L+KSI+G VNKVN NI I +LF EN+
Sbjct: 345 EVEDKSSVEYQRLTWDALRKSINGLVNKVNASNIKNIIPELFAENL 390
Score = 139 (54.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 24/29 (82%), Positives = 28/29 (96%)
Query: 1 MEGVFPRDNPKNTRFAINFFTSIGLGGLT 29
+E +FP+DNPKNTRFAINFFTSIGLGG+T
Sbjct: 807 LESIFPKDNPKNTRFAINFFTSIGLGGIT 835
>DICTYBASE|DDB_G0267796 [details] [associations]
symbol:DDB_G0267796 "initiation factor eIF-4 gamma,
MA3 domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
dictyBase:DDB_G0267796 SUPFAM:SSF48371 GO:GO:0003677
EMBL:AAFI02000003 GO:GO:0005681 GO:GO:0003743 GO:GO:0000398
Gene3D:1.25.40.180 eggNOG:NOG293831 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 OMA:VENEERY
RefSeq:XP_647313.1 ProteinModelPortal:Q55G70 STRING:Q55G70
EnsemblProtists:DDB0233565 GeneID:8616124 KEGG:ddi:DDB_G0267796
InParanoid:Q55G70 Uniprot:Q55G70
Length = 925
Score = 195 (73.7 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 41/100 (41%), Positives = 57/100 (57%)
Query: 38 KDQRDSTKQTPQNKQXXXXXXXXXXXXXXXXXNILSSKTGGAYIPPAKLKLMQQSISDKS 97
K++++ T NK+ I + GG YIPP KL +MQ+ I DKS
Sbjct: 292 KEEKEETSSNNNNKKEQSEKSIKIEEKVLDA--ISKDRAGGVYIPPFKLAMMQKQIQDKS 349
Query: 98 SVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENI 137
S EYQR+ W+ L+KSI+G +NKV+ N+ IA +LF ENI
Sbjct: 350 SPEYQRMEWDALRKSINGLINKVSYSNVKNIAVELFGENI 389
Score = 117 (46.2 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 3 GVFPRDNPKNTRFAINFFTSIGLGGLT 29
G+FP+DN KNTR+AINFFTSI LG LT
Sbjct: 829 GIFPKDNQKNTRYAINFFTSISLGALT 855
>GENEDB_PFALCIPARUM|PFL1855w [details] [associations]
symbol:PFL1855w "cell cycle control protein,
putative" species:5833 "Plasmodium falciparum" [GO:0051726
"regulation of cell cycle" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0051726 EMBL:AE014188
GO:GO:0016070 Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 RefSeq:XP_001350777.1
ProteinModelPortal:Q8I540 IntAct:Q8I540 MINT:MINT-1580329
EnsemblProtists:PFL1855w:mRNA GeneID:811423 KEGG:pfa:PFL1855w
EuPathDB:PlasmoDB:PF3D7_1238300 HOGENOM:HOG000283489
ProtClustDB:CLSZ2848125 Uniprot:Q8I540
Length = 967
Score = 149 (57.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 75 KTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQ 134
K GG YIPP KL+ ++ +++K SV YQ+ W LKK I+ VNKVN NI + +LF+
Sbjct: 402 KAGGVYIPPFKLERLKTEVTNKKSVLYQKQEWMKLKKKINNIVNKVNIDNISEVCYELFE 461
Query: 135 ENI 137
N+
Sbjct: 462 CNL 464
Score = 99 (39.9 bits), Expect = 0.00059, P = 0.00059
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 3 GVFPRDNPKNTRFAINFFTSIGLGGLT 29
G+FP +N +N RF INFFT+IGLG LT
Sbjct: 932 GLFPTNNAQNIRFCINFFTAIGLGALT 958
>UNIPROTKB|Q8I540 [details] [associations]
symbol:PFL1855w "Cell cycle control protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0051726 "regulation of cell
cycle" evidence=ISS] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0051726 EMBL:AE014188 GO:GO:0016070
Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 RefSeq:XP_001350777.1
ProteinModelPortal:Q8I540 IntAct:Q8I540 MINT:MINT-1580329
EnsemblProtists:PFL1855w:mRNA GeneID:811423 KEGG:pfa:PFL1855w
EuPathDB:PlasmoDB:PF3D7_1238300 HOGENOM:HOG000283489
ProtClustDB:CLSZ2848125 Uniprot:Q8I540
Length = 967
Score = 149 (57.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 75 KTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQ 134
K GG YIPP KL+ ++ +++K SV YQ+ W LKK I+ VNKVN NI + +LF+
Sbjct: 402 KAGGVYIPPFKLERLKTEVTNKKSVLYQKQEWMKLKKKINNIVNKVNIDNISEVCYELFE 461
Query: 135 ENI 137
N+
Sbjct: 462 CNL 464
Score = 99 (39.9 bits), Expect = 0.00059, P = 0.00059
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 3 GVFPRDNPKNTRFAINFFTSIGLGGLT 29
G+FP +N +N RF INFFT+IGLG LT
Sbjct: 932 GLFPTNNAQNIRFCINFFTAIGLGALT 958
>TAIR|locus:504956291 [details] [associations]
symbol:AT1G52325 "AT1G52325" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GO:GO:0003743 InterPro:IPR003891
Pfam:PF02847 IPI:IPI00525693 RefSeq:NP_683421.1 UniGene:At.20580
UniGene:At.52154 EnsemblPlants:AT1G52325.1 GeneID:841663
KEGG:ath:AT1G52325 OMA:ETFESIF PhylomeDB:F4ICW3 Uniprot:F4ICW3
Length = 145
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 2 EGVFPRDNPKNTRFAINFFTSIGLGGLTR 30
E +FP+D+ KNT F+I FFT IGLGG+T+
Sbjct: 86 ESIFPKDHRKNTLFSIIFFTKIGLGGITQ 114
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 139 122 0.00091 102 3 11 23 0.41 31
29 0.49 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 546 (58 KB)
Total size of DFA: 117 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.81u 0.08s 10.89t Elapsed: 00:00:07
Total cpu time: 10.81u 0.08s 10.89t Elapsed: 00:00:07
Start: Thu Aug 15 13:41:52 2013 End: Thu Aug 15 13:41:59 2013