RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7794
         (139 letters)



>gnl|CDD|239230 cd02901, Macro_Poa1p_like, Macro domain, Poa1p_like family. The
          macro domain is a high-affinity ADP-ribose binding
          module found in a variety of proteins as a stand-alone
          domain or in combination with other domains like in
          histone macroH2A and some PARPs (poly ADP-ribose
          polymerases). Some macro domains recognize poly
          ADP-ribose as a ligand. Previously identified as
          displaying an Appr-1"-p (ADP-ribose-1"-monophosphate)
          processing activity, the macro domain may play roles in
          distinct ADP-ribose pathways, such as the
          ADP-ribosylation of proteins, an important
          post-translational modification which occurs in DNA
          repair, transcription, chromatin biology, and long-term
          memory formation, among other processes. Members of
          this family show similarity to the yeast protein Poa1p,
          reported to be a phosphatase specific for Appr-1"-p, a
          tRNA splicing metabolite. Poa1p may play a role in tRNA
          splicing regulation.
          Length = 140

 Score = 28.4 bits (64), Expect = 0.76
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 4  VFPRDNPKNTRFAINFFTSIGLGGLTRY 31
          V  R +   +R+  N  T +  G  +RY
Sbjct: 63 VLERGSSLVSRYIYNLPTKVHYGPKSRY 90


>gnl|CDD|130918 TIGR01859, fruc_bis_ald_, fructose-1,6-bisphosphate aldolase, class
           II, various bacterial and amitochondriate protist.  This
           model represents of one of several subtypes of the class
           II fructose-1,6-bisphosphate aldolase, an enzyme of
           glycolysis. The subtypes are split into several models
           to allow separation of a family of tagatose bisphosphate
           aldolases. This form is found in Gram-positive bacteria,
           a variety of Gram-negative, and in amitochondriate
           protists. The class II enzymes share homology with
           tagatose bisphosphate aldolase but not with class I
           aldolase [Energy metabolism,
           Glycolysis/gluconeogenesis].
          Length = 282

 Score = 26.9 bits (60), Expect = 3.2
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 104 ISWETLKKSIHGSVNKVNTGNIGIIA-----RKLFQEN 136
           I  E +KK+I   + K+N      IA     RK+  E 
Sbjct: 211 IPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTEK 248


>gnl|CDD|224409 COG1492, CobQ, Cobyric acid synthase [Coenzyme metabolism].
          Length = 486

 Score = 27.2 bits (61), Expect = 3.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 88  LMQQSISDKSSVEYQRISWETLKKSIHGSVNKV 120
           +M + I  KS+VEY +     L  ++  S+ ++
Sbjct: 90  VMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL 122


>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
           dihydrolipoamide succinyltransferase.  This model
           represents an Actinobacterial clade of E2 enzyme, a
           component of the 2-oxoglutarate dehydrogenase complex
           involved in the TCA cycle. These proteins have multiple
           domains including the catalytic domain (pfam00198), one
           or two biotin domains (pfam00364) and an E3-component
           binding domain (pfam02817).
          Length = 579

 Score = 26.9 bits (59), Expect = 4.8
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 38  KDQRDSTKQTPQNKQKTENESKPESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKS 97
                +    P         + P ++ P +S +       G Y+ P   KL +    D S
Sbjct: 231 ARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGD------SGPYVTPLVRKLAKDKGVDLS 284

Query: 98  SV 99
           +V
Sbjct: 285 TV 286


>gnl|CDD|217641 pfam03616, Glt_symporter, Sodium/glutamate symporter. 
          Length = 368

 Score = 26.5 bits (59), Expect = 5.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 8  DNPKNTRFAINFFTSIGLGG 27
          D        + FFT+IGL  
Sbjct: 62 DASLQDPLMLAFFTTIGLSA 81


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.309    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,505,693
Number of extensions: 503052
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 16
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.7 bits)