RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7794
         (139 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 34/128 (26%)

Query: 28  LTRYYGDSGRKDQRDS--TKQTPQNKQK---TENESK---------PESSEPKTSTNILS 73
            TR        D   +  T     +      T +E K              P+       
Sbjct: 271 TTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN- 326

Query: 74  SKTGGAYIPPAKLKLMQQSISDKSSV--EYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
                    P +L ++ +SI D  +    ++ ++ + L   I  S+N +         RK
Sbjct: 327 ---------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY----RK 373

Query: 132 LFQE-NIF 138
           +F   ++F
Sbjct: 374 MFDRLSVF 381


>3f4a_A Uncharacterized protein YGR203W; protein phosphatase,
           rhodanese-like family, structural genomics, PSI-2,
           protein structure initiative; HET: MSE; 1.80A
           {Saccharomyces cerevisiae} PDB: 3fs5_A*
          Length = 169

 Score = 26.6 bits (58), Expect = 2.5
 Identities = 5/57 (8%), Positives = 15/57 (26%)

Query: 72  LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGII 128
           + S     +    +  L  Q +   S    + +    L + +             ++
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGMDSYSITNVKYLDPTELHRWMQEGHTTTLREPFQVV 57


>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor,
           lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB:
           3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
          Length = 307

 Score = 26.1 bits (58), Expect = 5.0
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 77  GGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIA-----RK 131
           G + IP    K    +  D      + + +E L++S+ G +NKVNT     IA     RK
Sbjct: 211 GASAIPDNVRKSYLDAGGDLK--GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRK 268

Query: 132 LFQEN--IFD 139
           +  E+   FD
Sbjct: 269 VANEDKSQFD 278


>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase,
           metal-depdendent aldolase, lyase; 2.00A {Thermus
           aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
          Length = 305

 Score = 25.7 bits (57), Expect = 5.4
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 17/74 (22%)

Query: 77  GGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVN---------TGNIGI 127
           G + +PP  ++  + S  +    E   I  E +KK+I   + K+N         T  I  
Sbjct: 209 GASAVPPELVERFRASGGEIG--EAAGIHPEDIKKAISLGIAKINTDTDLRLAFTALI-- 264

Query: 128 IARKLFQEN--IFD 139
             R+   +N   FD
Sbjct: 265 --REALNKNPKEFD 276


>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla
           glycoprotein, secreted, storage protein, oxygen
           transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea
           pernyi}
          Length = 674

 Score = 25.7 bits (56), Expect = 7.7
 Identities = 7/47 (14%), Positives = 16/47 (34%)

Query: 90  QQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQEN 136
              ++D  +  +    W+         V K    +  I+AR++    
Sbjct: 333 TIYLNDSKANSFVGNYWQDNADLYGEEVTKDYQRSYEIVARQVLGAA 379


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0755    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,824,591
Number of extensions: 82320
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 7
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (23.8 bits)