Query psy7798
Match_columns 261
No_of_seqs 315 out of 1964
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 1.5E-33 3.2E-38 248.5 13.0 159 101-260 2-166 (339)
2 KOG0023|consensus 100.0 1.1E-28 2.4E-33 212.2 12.7 161 97-258 4-179 (360)
3 KOG0024|consensus 99.9 7.6E-28 1.7E-32 207.5 10.3 156 102-260 4-169 (354)
4 COG1062 AdhC Zn-dependent alco 99.9 1.8E-27 3.9E-32 206.7 11.7 159 101-260 1-185 (366)
5 PLN02740 Alcohol dehydrogenase 99.9 9.6E-27 2.1E-31 212.3 16.7 164 97-260 5-198 (381)
6 TIGR02818 adh_III_F_hyde S-(hy 99.9 1.5E-26 3.3E-31 210.1 16.4 158 103-260 2-185 (368)
7 cd08301 alcohol_DH_plants Plan 99.9 2.6E-26 5.5E-31 208.4 16.6 159 102-260 2-187 (369)
8 cd08300 alcohol_DH_class_III c 99.9 8E-26 1.7E-30 205.2 16.4 159 102-260 2-186 (368)
9 cd08281 liver_ADH_like1 Zinc-d 99.9 1.4E-25 2.9E-30 203.9 15.9 157 103-260 1-191 (371)
10 PLN02586 probable cinnamyl alc 99.9 1.4E-25 3E-30 203.3 15.7 160 99-258 9-181 (360)
11 COG0604 Qor NADPH:quinone redu 99.9 1.5E-25 3.4E-30 200.1 14.3 139 103-260 1-142 (326)
12 TIGR03451 mycoS_dep_FDH mycoth 99.9 2.4E-25 5.2E-30 201.3 15.7 158 102-260 1-176 (358)
13 cd08277 liver_alcohol_DH_like 99.9 3.6E-25 7.8E-30 200.7 16.4 158 102-260 2-184 (365)
14 PLN02827 Alcohol dehydrogenase 99.9 5.7E-25 1.2E-29 200.5 16.9 160 98-260 8-193 (378)
15 KOG0022|consensus 99.9 2.8E-25 6E-30 190.6 12.1 163 98-260 3-192 (375)
16 cd08239 THR_DH_like L-threonin 99.9 1.3E-24 2.7E-29 194.8 15.3 155 103-259 1-162 (339)
17 PLN02514 cinnamyl-alcohol dehy 99.9 1.8E-24 3.9E-29 195.7 16.2 159 100-258 7-178 (357)
18 TIGR02819 fdhA_non_GSH formald 99.9 1.7E-24 3.7E-29 198.3 15.6 155 102-259 2-184 (393)
19 PLN02178 cinnamyl-alcohol dehy 99.9 7.3E-24 1.6E-28 193.0 15.5 152 105-256 9-173 (375)
20 cd08299 alcohol_DH_class_I_II_ 99.9 1.9E-23 4E-28 190.2 17.0 159 101-260 6-190 (373)
21 TIGR02822 adh_fam_2 zinc-bindi 99.9 1.2E-23 2.7E-28 188.2 14.7 146 114-260 14-165 (329)
22 cd08230 glucose_DH Glucose deh 99.9 5.1E-23 1.1E-27 185.9 14.0 147 103-252 1-158 (355)
23 cd08231 MDR_TM0436_like Hypoth 99.9 1.1E-22 2.3E-27 183.9 15.8 155 104-258 2-175 (361)
24 cd08278 benzyl_alcohol_DH Benz 99.9 1.3E-22 2.8E-27 184.0 15.4 158 101-260 1-186 (365)
25 PRK09880 L-idonate 5-dehydroge 99.9 9.5E-23 2.1E-27 183.3 14.4 150 102-256 4-166 (343)
26 KOG1197|consensus 99.9 7.3E-23 1.6E-27 171.2 11.6 140 99-260 5-146 (336)
27 cd08279 Zn_ADH_class_III Class 99.9 2.9E-22 6.2E-27 181.5 16.2 157 103-260 1-182 (363)
28 cd08283 FDH_like_1 Glutathione 99.9 3.1E-22 6.6E-27 182.9 16.0 156 103-260 1-184 (386)
29 TIGR03201 dearomat_had 6-hydro 99.9 4.1E-22 9E-27 179.6 14.4 152 106-259 2-165 (349)
30 cd05279 Zn_ADH1 Liver alcohol 99.9 7E-22 1.5E-26 179.2 15.9 156 104-260 2-183 (365)
31 cd08259 Zn_ADH5 Alcohol dehydr 99.9 9.5E-22 2.1E-26 174.7 16.3 157 103-260 1-162 (332)
32 cd05278 FDH_like Formaldehyde 99.9 5.1E-22 1.1E-26 178.0 14.6 156 103-260 1-167 (347)
33 COG1063 Tdh Threonine dehydrog 99.9 5.2E-22 1.1E-26 179.2 14.0 148 103-252 1-160 (350)
34 cd08296 CAD_like Cinnamyl alco 99.9 1.2E-21 2.5E-26 175.4 16.1 156 103-259 1-162 (333)
35 PRK13771 putative alcohol dehy 99.9 2.2E-21 4.7E-26 173.2 16.1 156 103-259 1-161 (334)
36 cd08233 butanediol_DH_like (2R 99.9 1.4E-21 3E-26 176.0 14.9 155 103-260 1-172 (351)
37 cd08263 Zn_ADH10 Alcohol dehyd 99.9 2.2E-21 4.7E-26 175.9 15.8 157 103-260 1-187 (367)
38 cd08285 NADP_ADH NADP(H)-depen 99.9 2.7E-21 5.8E-26 174.2 15.6 156 103-260 1-166 (351)
39 cd08260 Zn_ADH6 Alcohol dehydr 99.9 4E-21 8.7E-26 172.4 16.5 158 103-260 1-165 (345)
40 cd05284 arabinose_DH_like D-ar 99.9 2.9E-21 6.2E-26 172.8 15.3 157 103-259 1-166 (340)
41 cd08256 Zn_ADH2 Alcohol dehydr 99.9 4.1E-21 8.8E-26 172.9 15.3 155 103-260 1-174 (350)
42 cd08240 6_hydroxyhexanoate_dh_ 99.9 5.7E-21 1.2E-25 171.9 15.3 157 103-259 1-174 (350)
43 PRK10309 galactitol-1-phosphat 99.9 6.7E-21 1.5E-25 171.4 15.3 153 103-259 1-159 (347)
44 cd08264 Zn_ADH_like2 Alcohol d 99.9 9.8E-21 2.1E-25 168.3 15.8 156 103-260 1-162 (325)
45 cd08237 ribitol-5-phosphate_DH 99.9 4.1E-21 9E-26 172.7 13.4 145 103-255 3-156 (341)
46 cd08284 FDH_like_2 Glutathione 99.9 9.2E-21 2E-25 169.8 15.3 154 103-259 1-166 (344)
47 PRK09422 ethanol-active dehydr 99.9 1.1E-20 2.4E-25 168.8 15.8 156 103-260 1-162 (338)
48 PRK10083 putative oxidoreducta 99.9 1E-20 2.2E-25 169.4 15.4 155 103-260 1-160 (339)
49 cd08286 FDH_like_ADH2 formalde 99.9 1.3E-20 2.9E-25 169.0 15.7 157 103-260 1-166 (345)
50 cd05283 CAD1 Cinnamyl alcohol 99.8 1.7E-20 3.7E-25 168.1 15.3 151 105-255 2-165 (337)
51 cd08282 PFDH_like Pseudomonas 99.8 2E-20 4.4E-25 170.2 16.0 155 103-260 1-176 (375)
52 cd08266 Zn_ADH_like1 Alcohol d 99.8 2.3E-20 4.9E-25 165.9 15.9 157 103-259 1-165 (342)
53 PF08240 ADH_N: Alcohol dehydr 99.8 6.4E-21 1.4E-25 144.0 9.7 84 127-210 1-85 (109)
54 cd08298 CAD2 Cinnamyl alcohol 99.8 3.8E-20 8.3E-25 164.8 15.8 157 103-260 1-167 (329)
55 cd08246 crotonyl_coA_red croto 99.8 3.4E-20 7.5E-25 169.6 14.6 162 99-260 9-193 (393)
56 cd08254 hydroxyacyl_CoA_DH 6-h 99.8 8.1E-20 1.7E-24 162.8 15.2 158 103-260 1-165 (338)
57 TIGR01751 crot-CoA-red crotony 99.8 7.9E-20 1.7E-24 167.6 15.0 160 100-259 5-188 (398)
58 cd08261 Zn_ADH7 Alcohol dehydr 99.8 1.5E-19 3.3E-24 161.7 15.7 154 103-260 1-159 (337)
59 TIGR02817 adh_fam_1 zinc-bindi 99.8 7.3E-20 1.6E-24 163.4 13.5 137 105-260 2-143 (336)
60 cd08258 Zn_ADH4 Alcohol dehydr 99.8 1.8E-19 4E-24 159.5 16.0 157 103-260 1-164 (306)
61 cd08238 sorbose_phosphate_red 99.8 8.3E-20 1.8E-24 168.2 13.8 133 101-241 1-146 (410)
62 cd08245 CAD Cinnamyl alcohol d 99.8 2.1E-19 4.5E-24 160.1 15.3 155 104-259 1-161 (330)
63 cd08236 sugar_DH NAD(P)-depend 99.8 3.6E-19 7.8E-24 159.5 15.2 154 103-260 1-159 (343)
64 cd08235 iditol_2_DH_like L-idi 99.8 4.4E-19 9.6E-24 158.8 15.7 155 103-260 1-165 (343)
65 cd08292 ETR_like_2 2-enoyl thi 99.8 3.1E-19 6.6E-24 158.3 14.3 135 103-260 1-139 (324)
66 TIGR01202 bchC 2-desacetyl-2-h 99.8 3.3E-19 7.1E-24 158.2 13.8 135 103-254 2-140 (308)
67 cd08232 idonate-5-DH L-idonate 99.8 3.9E-19 8.5E-24 159.0 14.4 149 108-258 3-164 (339)
68 cd08287 FDH_like_ADH3 formalde 99.8 4.8E-19 1.1E-23 158.8 15.0 155 103-260 1-168 (345)
69 cd08291 ETR_like_1 2-enoyl thi 99.8 2.8E-19 6E-24 159.4 13.3 134 103-258 1-141 (324)
70 cd08262 Zn_ADH8 Alcohol dehydr 99.8 4.9E-19 1.1E-23 158.6 14.8 149 103-260 1-161 (341)
71 cd08297 CAD3 Cinnamyl alcohol 99.8 1.1E-18 2.3E-23 156.4 16.0 156 103-259 1-164 (341)
72 PLN02702 L-idonate 5-dehydroge 99.8 9E-19 1.9E-23 158.6 15.7 155 102-259 17-180 (364)
73 cd05285 sorbitol_DH Sorbitol d 99.8 6E-19 1.3E-23 158.4 14.4 152 106-260 2-162 (343)
74 cd08234 threonine_DH_like L-th 99.8 9.3E-19 2E-23 156.1 15.1 154 103-260 1-159 (334)
75 PRK05396 tdh L-threonine 3-deh 99.8 7.9E-19 1.7E-23 157.4 14.5 150 103-253 1-158 (341)
76 KOG0025|consensus 99.8 7.4E-19 1.6E-23 149.6 12.2 138 101-260 18-160 (354)
77 cd08274 MDR9 Medium chain dehy 99.8 2E-18 4.3E-23 154.9 15.5 154 103-260 1-177 (350)
78 cd08290 ETR 2-enoyl thioester 99.8 1.2E-18 2.7E-23 155.8 13.5 137 103-260 1-146 (341)
79 cd08265 Zn_ADH3 Alcohol dehydr 99.8 3.2E-18 7E-23 156.3 15.2 146 114-260 38-203 (384)
80 cd05281 TDH Threonine dehydrog 99.8 5.6E-18 1.2E-22 152.0 14.4 150 103-253 1-158 (341)
81 cd08242 MDR_like Medium chain 99.8 7.1E-18 1.5E-22 149.7 14.9 149 103-260 1-155 (319)
82 PRK10754 quinone oxidoreductas 99.8 5.6E-18 1.2E-22 150.7 14.1 138 102-260 1-140 (327)
83 TIGR00692 tdh L-threonine 3-de 99.8 6.8E-18 1.5E-22 151.3 13.8 144 109-253 5-156 (340)
84 cd08248 RTN4I1 Human Reticulon 99.8 7.4E-18 1.6E-22 151.2 13.1 138 103-259 1-157 (350)
85 cd08276 MDR7 Medium chain dehy 99.8 2.6E-17 5.6E-22 146.3 16.4 157 103-260 1-160 (336)
86 cd08250 Mgc45594_like Mgc45594 99.8 2.1E-17 4.5E-22 147.1 14.9 134 102-260 1-139 (329)
87 PTZ00354 alcohol dehydrogenase 99.7 2.8E-17 6E-22 146.1 14.8 137 102-260 1-140 (334)
88 cd08293 PTGR2 Prostaglandin re 99.7 1.2E-17 2.5E-22 149.9 12.4 122 115-260 23-152 (345)
89 cd08270 MDR4 Medium chain dehy 99.7 2.9E-17 6.3E-22 144.4 14.2 130 103-258 1-131 (305)
90 cd08249 enoyl_reductase_like e 99.7 1.4E-17 2.9E-22 149.5 12.3 141 103-258 1-142 (339)
91 cd05280 MDR_yhdh_yhfp Yhdh and 99.7 4.3E-17 9.3E-22 144.5 14.0 137 103-257 1-140 (325)
92 cd08247 AST1_like AST1 is a cy 99.7 4.9E-17 1.1E-21 146.4 14.2 139 104-260 2-151 (352)
93 cd08244 MDR_enoyl_red Possible 99.7 8.4E-17 1.8E-21 142.5 14.8 137 103-260 1-142 (324)
94 cd08252 AL_MDR Arginate lyase 99.7 6.7E-17 1.4E-21 144.1 13.9 139 103-260 1-144 (336)
95 cd08271 MDR5 Medium chain dehy 99.7 1E-16 2.2E-21 141.7 14.4 139 103-260 1-141 (325)
96 cd08273 MDR8 Medium chain dehy 99.7 1.1E-16 2.4E-21 142.3 14.7 135 104-260 2-139 (331)
97 cd05188 MDR Medium chain reduc 99.7 5.6E-17 1.2E-21 139.4 11.8 127 129-259 1-133 (271)
98 cd08253 zeta_crystallin Zeta-c 99.7 1.3E-16 2.8E-21 140.4 14.0 141 103-260 1-144 (325)
99 cd08272 MDR6 Medium chain dehy 99.7 1.7E-16 3.7E-21 140.0 14.8 141 103-260 1-144 (326)
100 cd08295 double_bond_reductase_ 99.7 1.4E-16 3E-21 142.8 13.4 132 103-260 8-151 (338)
101 cd08243 quinone_oxidoreductase 99.7 2.4E-16 5.1E-21 139.0 14.6 140 103-260 1-142 (320)
102 cd05276 p53_inducible_oxidored 99.7 4.4E-16 9.6E-21 136.7 15.2 135 103-259 1-138 (323)
103 TIGR02825 B4_12hDH leukotriene 99.7 2.3E-16 5E-21 140.6 12.3 115 115-260 19-138 (325)
104 cd08294 leukotriene_B4_DH_like 99.7 5.5E-16 1.2E-20 137.8 13.9 128 102-260 2-143 (329)
105 PLN03154 putative allyl alcoho 99.7 9.8E-16 2.1E-20 138.3 15.7 134 101-260 7-158 (348)
106 TIGR02823 oxido_YhdH putative 99.7 7.4E-16 1.6E-20 136.8 14.2 134 104-255 1-137 (323)
107 cd08289 MDR_yhfp_like Yhfp put 99.7 7.2E-16 1.6E-20 136.9 13.4 135 103-255 1-138 (326)
108 cd05286 QOR2 Quinone oxidoredu 99.7 1.7E-15 3.7E-20 132.8 15.1 133 105-260 2-136 (320)
109 cd08288 MDR_yhdh Yhdh putative 99.7 1.3E-15 2.9E-20 135.1 14.1 133 103-253 1-136 (324)
110 cd05289 MDR_like_2 alcohol deh 99.7 1.3E-15 2.8E-20 133.2 13.8 138 103-259 1-143 (309)
111 cd05282 ETR_like 2-enoyl thioe 99.7 9E-16 2E-20 135.9 12.5 124 115-260 14-138 (323)
112 cd08268 MDR2 Medium chain dehy 99.6 2.5E-15 5.5E-20 132.5 14.3 140 103-259 1-143 (328)
113 TIGR02824 quinone_pig3 putativ 99.6 6.1E-15 1.3E-19 129.9 14.6 136 103-260 1-139 (325)
114 TIGR03366 HpnZ_proposed putati 99.6 6.8E-16 1.5E-20 135.1 8.3 97 159-255 1-116 (280)
115 cd08275 MDR3 Medium chain dehy 99.6 7.1E-15 1.5E-19 130.5 15.0 133 106-260 3-138 (337)
116 cd08267 MDR1 Medium chain dehy 99.6 4.5E-15 9.7E-20 130.8 12.5 125 116-259 15-142 (319)
117 cd08251 polyketide_synthase po 99.6 8.5E-15 1.8E-19 127.8 12.5 118 122-260 2-120 (303)
118 cd08269 Zn_ADH9 Alcohol dehydr 99.6 8.9E-15 1.9E-19 128.9 12.0 120 114-260 6-129 (312)
119 cd08241 QOR1 Quinone oxidoredu 99.6 6.1E-14 1.3E-18 123.2 14.6 134 103-259 1-138 (323)
120 cd05288 PGDH Prostaglandin deh 99.5 1.7E-13 3.6E-18 121.8 14.0 120 114-260 19-145 (329)
121 cd05195 enoyl_red enoyl reduct 99.5 1.2E-13 2.5E-18 119.4 10.9 108 128-260 1-108 (293)
122 KOG1198|consensus 99.5 5.3E-13 1.1E-17 120.0 13.0 119 115-256 20-147 (347)
123 smart00829 PKS_ER Enoylreducta 99.4 9.5E-13 2.1E-17 113.6 10.1 103 131-259 1-103 (288)
124 cd08255 2-desacetyl-2-hydroxye 98.9 2.7E-09 5.9E-14 92.6 7.8 84 149-260 14-97 (277)
125 COG2130 Putative NADP-dependen 98.9 1.1E-08 2.4E-13 88.5 10.4 122 113-260 25-150 (340)
126 KOG1202|consensus 98.9 2.8E-09 6E-14 105.1 5.5 116 113-260 1427-1552(2376)
127 KOG1196|consensus 96.4 0.043 9.3E-07 48.1 10.5 111 122-260 32-153 (343)
128 PTZ00414 10 kDa heat shock pro 86.1 0.89 1.9E-05 33.4 3.1 23 164-186 45-71 (100)
129 cd00320 cpn10 Chaperonin 10 Kd 86.0 0.88 1.9E-05 33.0 3.1 54 125-187 4-67 (93)
130 PRK00364 groES co-chaperonin G 84.4 0.97 2.1E-05 32.9 2.7 24 164-187 36-68 (95)
131 PRK14533 groES co-chaperonin G 80.4 2.1 4.6E-05 30.9 3.1 24 164-187 36-63 (91)
132 COG0234 GroS Co-chaperonin Gro 78.9 2.2 4.7E-05 31.0 2.7 22 165-186 37-67 (96)
133 PF09851 SHOCT: Short C-termin 78.6 4.8 0.0001 22.8 3.6 29 4-32 1-29 (31)
134 PF13823 ADH_N_assoc: Alcohol 76.2 3.4 7.4E-05 21.8 2.3 22 103-125 1-22 (23)
135 KOG1641|consensus 75.6 5.4 0.00012 29.3 4.0 54 125-187 13-76 (104)
136 PF00166 Cpn10: Chaperonin 10 74.2 3.1 6.8E-05 30.1 2.6 26 163-188 34-68 (93)
137 cd04413 NDPk_I Nucleoside diph 48.2 19 0.0004 27.7 2.8 19 1-19 37-55 (130)
138 smart00679 CTNS Repeated motif 47.1 12 0.00025 20.8 1.1 14 9-22 5-18 (32)
139 cd06919 Asp_decarbox Aspartate 44.3 16 0.00034 27.4 1.7 32 158-189 58-89 (111)
140 cd04415 NDPk7A Nucleoside diph 43.9 26 0.00056 27.0 3.0 19 1-19 35-53 (131)
141 PRK14540 nucleoside diphosphat 43.1 25 0.00054 27.2 2.8 18 2-19 40-57 (134)
142 cd00595 NDPk Nucleoside diphos 42.8 25 0.00053 27.0 2.7 19 1-19 37-55 (133)
143 cd04414 NDPk6 Nucleoside dipho 41.9 30 0.00064 26.8 3.0 20 1-20 38-57 (135)
144 PRK14541 nucleoside diphosphat 41.1 29 0.00062 27.1 2.9 19 2-20 39-57 (140)
145 PRK14545 nucleoside diphosphat 40.9 32 0.00068 26.8 3.1 19 2-20 41-59 (139)
146 cd04418 NDPk5 Nucleoside dipho 40.1 31 0.00067 26.6 2.9 19 1-19 35-53 (132)
147 PRK14542 nucleoside diphosphat 39.9 32 0.00069 26.8 2.9 19 2-20 39-57 (137)
148 PF02261 Asp_decarbox: Asparta 39.2 14 0.0003 27.9 0.7 31 158-188 59-89 (116)
149 TIGR00223 panD L-aspartate-alp 38.3 22 0.00047 27.2 1.7 32 158-189 59-90 (126)
150 PRK05449 aspartate alpha-decar 37.8 25 0.00055 26.9 2.0 32 158-189 59-90 (126)
151 cd04416 NDPk_TX NDP kinase dom 37.1 37 0.00081 26.0 2.9 18 2-19 37-54 (132)
152 PRK00668 ndk mulitfunctional n 35.2 40 0.00086 26.0 2.8 19 1-19 38-56 (134)
153 PTZ00093 nucleoside diphosphat 31.7 49 0.0011 26.1 2.9 18 2-19 40-57 (149)
154 PF14031 D-ser_dehydrat: Putat 30.1 37 0.0008 24.5 1.8 27 165-192 55-81 (94)
155 PRK09458 pspB phage shock prot 30.1 72 0.0016 22.1 3.1 29 17-45 33-61 (75)
156 smart00562 NDK These are enzym 28.0 54 0.0012 25.1 2.5 19 1-19 37-55 (135)
157 PF02885 Glycos_trans_3N: Glyc 27.4 77 0.0017 21.0 2.9 32 2-33 14-45 (66)
158 PLN02931 nucleoside diphosphat 27.3 65 0.0014 26.3 2.9 19 2-20 67-85 (177)
159 PF00334 NDK: Nucleoside dipho 27.1 36 0.00078 26.1 1.4 18 2-19 38-55 (135)
160 COG5176 MSL5 Splicing factor ( 26.2 29 0.00064 29.0 0.7 15 9-23 8-22 (269)
161 PF12174 RST: RCD1-SRO-TAF4 (R 26.0 61 0.0013 22.1 2.1 24 6-29 28-51 (70)
162 PF14771 DUF4476: Domain of un 25.7 1.2E+02 0.0026 21.6 3.8 33 2-34 4-36 (95)
163 PRK10878 hypothetical protein; 25.3 1.2E+02 0.0026 20.8 3.5 45 18-62 17-61 (72)
164 COG2938 Uncharacterized conser 25.3 1.6E+02 0.0034 21.4 4.2 39 10-49 35-73 (94)
165 PF04193 PQ-loop: PQ loop repe 24.7 37 0.00079 21.9 0.8 17 9-25 19-35 (61)
166 PLN02619 nucleoside-diphosphat 24.6 79 0.0017 27.1 3.0 20 1-20 125-144 (238)
167 PF08479 POTRA_2: POTRA domain 24.4 1E+02 0.0023 20.8 3.2 33 2-34 13-45 (76)
168 PF14071 YlbD_coat: Putative c 24.2 1.5E+02 0.0034 22.6 4.2 41 9-49 25-81 (124)
169 cd04412 NDPk7B Nucleoside diph 24.1 79 0.0017 24.3 2.8 17 2-18 38-54 (134)
170 PF06667 PspB: Phage shock pro 23.8 1.1E+02 0.0024 21.2 3.1 30 16-45 32-61 (75)
171 COG3454 Metal-dependent hydrol 23.0 96 0.0021 28.0 3.3 26 8-33 175-201 (377)
172 PF02216 B: B domain; InterPr 22.7 1.4E+02 0.003 19.2 3.1 25 5-29 7-31 (54)
173 PF01988 VIT1: VIT family; In 22.0 1.1E+02 0.0023 25.5 3.4 32 3-34 77-108 (213)
174 COG0853 PanD Aspartate 1-decar 20.5 70 0.0015 24.4 1.7 32 158-189 58-89 (126)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=248.45 Aligned_cols=159 Identities=31% Similarity=0.433 Sum_probs=143.7
Q ss_pred eeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 101 ~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
++|+++++.++++++++.+++.|.|+++||+|+|+|||+|++|+|.+.|.++...+|.++|||.+|+|++||++|++||+
T Consensus 2 ~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k~ 81 (339)
T COG1064 2 MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLKV 81 (339)
T ss_pred cceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCCC
Confidence 57999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCEEEE-eeccCCCCCcccccCccccccccccc-----cceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhc
Q psy7798 181 GDHVIP-LYIPQCNECKFCKSSKTNLCTKIRTT-----QLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIK 254 (261)
Q Consensus 181 GDrV~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~ 254 (261)
||||.. +...+|++|.+|..+.+++|+..... |||+.+.++...+.+++|+++++++||.+.+++.|.|.+|.+
T Consensus 82 GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~ 161 (339)
T COG1064 82 GDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKK 161 (339)
T ss_pred CCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhh
Confidence 999976 77789999999999999999975433 445455555558899999999999999999999999999965
Q ss_pred ccCccc
Q psy7798 255 RRDFEK 260 (261)
Q Consensus 255 ~a~L~~ 260 (261)
+++++
T Consensus 162 -~~~~p 166 (339)
T COG1064 162 -ANVKP 166 (339)
T ss_pred -cCCCC
Confidence 77654
No 2
>KOG0023|consensus
Probab=99.96 E-value=1.1e-28 Score=212.19 Aligned_cols=161 Identities=25% Similarity=0.324 Sum_probs=141.3
Q ss_pred CCcceeeeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCC
Q psy7798 97 LPQVIECKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEG 174 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~ 174 (261)
...|.+.+++.+..+++ ++++.++++|+|+++||+|+|++||+|++|++.+.|.++...+|.++|||.+|+|++||++
T Consensus 4 ~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~ 83 (360)
T KOG0023|consen 4 MSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSN 83 (360)
T ss_pred ccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCC
Confidence 34566788899888887 5777999999999999999999999999999999999998889999999999999999999
Q ss_pred CCCCCCCCEE-EEeeccCCCCCcccccCccccccc--ccc----------ccceeeeeeeecccccccCCCCChhhhccc
Q psy7798 175 VTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTK--IRT----------TQLFLTSNVTISDFNMGYSMTGSLERGSKR 241 (261)
Q Consensus 175 v~~~~vGDrV-~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~l 241 (261)
|++||+|||| ++....+|..|++|..+.++.|++ ... .|||+.+.++...+..++|+++..++||-+
T Consensus 84 V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPl 163 (360)
T KOG0023|consen 84 VTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPL 163 (360)
T ss_pred cccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccch
Confidence 9999999999 667778999999999999999993 221 145666666666889999999999999999
Q ss_pred cchHHHHHHHHhcccCc
Q psy7798 242 DNSFQTTHFAVIKRRDF 258 (261)
Q Consensus 242 p~~~~TA~~aL~~~a~L 258 (261)
.++..|+|.+|. ..++
T Consensus 164 LCaGITvYspLk-~~g~ 179 (360)
T KOG0023|consen 164 LCAGITVYSPLK-RSGL 179 (360)
T ss_pred hhcceEEeehhH-HcCC
Confidence 999999999995 4444
No 3
>KOG0024|consensus
Probab=99.95 E-value=7.6e-28 Score=207.48 Aligned_cols=156 Identities=28% Similarity=0.389 Sum_probs=137.6
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCCC---CCCCcccccceEEEEEEeCCCCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDSE---GKFPCVLGHEGSGIVESVGEGVTS 177 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~~---~~~p~~lG~E~~G~V~~vG~~v~~ 177 (261)
+|+++++.++++ +++.+.|.|++ +|+||+|+++++|||.+|+|.+...... .+.|.++|||.+|+|.+||+.|++
T Consensus 4 ~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~ 82 (354)
T KOG0024|consen 4 DNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKH 82 (354)
T ss_pred ccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccccc
Confidence 588999998887 89999999887 9999999999999999999998754332 347899999999999999999999
Q ss_pred CCCCCEEEEeeccCCCCCcccccCccccccccccc------cceeeeeeeecccccccCCCCChhhhccccchHHHHHHH
Q psy7798 178 VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT------QLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFA 251 (261)
Q Consensus 178 ~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~a 251 (261)
+||||||+.-+..+|+.|.+|+.|++|.|+..... |++..+++...+.++++|++++|+++|-+- .+.++|+|
T Consensus 83 LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLsV~~HA 161 (354)
T KOG0024|consen 83 LKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PLSVGVHA 161 (354)
T ss_pred cccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhccccc-chhhhhhh
Confidence 99999999999999999999999999999976544 677777788779999999999999999664 59999999
Q ss_pred HhcccCccc
Q psy7798 252 VIKRRDFEK 260 (261)
Q Consensus 252 L~~~a~L~~ 260 (261)
. .++++++
T Consensus 162 c-r~~~vk~ 169 (354)
T KOG0024|consen 162 C-RRAGVKK 169 (354)
T ss_pred h-hhcCccc
Confidence 8 6777764
No 4
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.95 E-value=1.8e-27 Score=206.73 Aligned_cols=159 Identities=48% Similarity=0.784 Sum_probs=142.9
Q ss_pred eeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 101 ~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
|.+++++..++++||+++++..++|++|||+||+.|+|+|++|.++..|..|.. +|.++|||++|+|.+||++|+++|+
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 357899999999999999999999999999999999999999999999999976 9999999999999999999999999
Q ss_pred CCEEEEeeccCCCCCcccccCccccccccccc--------------------------cceeeeeeeecccccccCCCCC
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT--------------------------QLFLTSNVTISDFNMGYSMTGS 234 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~g~~~~~~~~~~~~~~~~~~~s 234 (261)
||.|+..+...||+|..|..+..++|.....+ +.|.++.++....+.+++++..
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p 159 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAP 159 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCC
Confidence 99999998889999999999999999843211 1344455555577889999999
Q ss_pred hhhhccccchHHHHHHHHhcccCccc
Q psy7798 235 LERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 235 ~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++.++-+.++..|.+-+.++.+++++
T Consensus 160 ~~~a~llGCgV~TG~Gav~nta~v~~ 185 (366)
T COG1062 160 LEKACLLGCGVTTGIGAVVNTAKVEP 185 (366)
T ss_pred ccceEEEeeeeccChHHhhhcccCCC
Confidence 99999999999999999999998874
No 5
>PLN02740 Alcohol dehydrogenase-like
Probab=99.95 E-value=9.6e-27 Score=212.27 Aligned_cols=164 Identities=42% Similarity=0.704 Sum_probs=141.9
Q ss_pred CCcceeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCC
Q psy7798 97 LPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGV 175 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v 175 (261)
.+.+++|+++++.++++++.+++++.|.|+++||+|||+++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|
T Consensus 5 ~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v 84 (381)
T PLN02740 5 QGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGV 84 (381)
T ss_pred cccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCC
Confidence 345678999999998877899999999999999999999999999999999987642 3468899999999999999999
Q ss_pred CCCCCCCEEEEeeccCCCCCcccccCcccccccccc-----------------------------ccceeeeeeeecccc
Q psy7798 176 TSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT-----------------------------TQLFLTSNVTISDFN 226 (261)
Q Consensus 176 ~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~g~~~~~~~~~~~~ 226 (261)
++|++||||++.+..+|+.|.+|..+..+.|..... .|++.++..+.....
T Consensus 85 ~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~ 164 (381)
T PLN02740 85 EDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACV 164 (381)
T ss_pred CcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHe
Confidence 999999999998888999999999999999986431 244445555555778
Q ss_pred cccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 227 MGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 227 ~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
.++|++++++++|.+++++.|||+++.+.+++++
T Consensus 165 ~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~ 198 (381)
T PLN02740 165 VKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQA 198 (381)
T ss_pred EECCCCCCHHHhhhhcccchhhHHHHHhccCCCC
Confidence 8999999999999999999999999988787764
No 6
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.94 E-value=1.5e-26 Score=210.06 Aligned_cols=158 Identities=47% Similarity=0.778 Sum_probs=137.8
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++...++.+++++++.|.|+++||+|||+++|+|++|++...|.++...+|.++|||++|+|+++|++|++|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 78888888888899999999999999999999999999999999999876556789999999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc--------------------------ccceeeeeeeecccccccCCCCChh
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------------------TQLFLTSNVTISDFNMGYSMTGSLE 236 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~g~~~~~~~~~~~~~~~~~~~s~~ 236 (261)
||++.+..+|+.|.+|..+..+.|..... .|++.++..++.....++|++++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~~ 161 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLE 161 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCCHH
Confidence 99988878999999999999999976321 1344444455557788999999999
Q ss_pred hhccccchHHHHHHHHhcccCccc
Q psy7798 237 RGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 237 eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++|.+++++.|||+++.+++++++
T Consensus 162 ~aa~l~~~~~ta~~a~~~~~~~~~ 185 (368)
T TIGR02818 162 EVCLLGCGVTTGIGAVLNTAKVEE 185 (368)
T ss_pred HhhhhcchhHHHHHHHHHhcCCCC
Confidence 999999999999999988777753
No 7
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.94 E-value=2.6e-26 Score=208.40 Aligned_cols=159 Identities=43% Similarity=0.726 Sum_probs=139.3
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
+|+++++.++++++++++++.|+|+++||+|||.++|||++|++...|..+...+|.++|||++|+|+++|++|++|++|
T Consensus 2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (369)
T cd08301 2 TCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKPG 81 (369)
T ss_pred ccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCccccC
Confidence 68999999888889999999999999999999999999999999999877655678999999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCcccccccccc--------------------------c-cceeeeeeeecccccccCCCCC
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------------------T-QLFLTSNVTISDFNMGYSMTGS 234 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~-~g~~~~~~~~~~~~~~~~~~~s 234 (261)
|||++.+...|+.|.+|..+..+.|..... . |++.++..+......++|++++
T Consensus 82 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~ 161 (369)
T cd08301 82 DHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAP 161 (369)
T ss_pred CEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCCC
Confidence 999998888999999999999999977521 1 3344444555577889999999
Q ss_pred hhhhccccchHHHHHHHHhcccCccc
Q psy7798 235 LERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 235 ~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++++|.+++++.|||+++.+.+++++
T Consensus 162 ~~~aa~~~~~~~ta~~~~~~~~~~~~ 187 (369)
T cd08301 162 LDKVCLLSCGVSTGLGAAWNVAKVKK 187 (369)
T ss_pred HHHhhhhcchhhHHHHHHHhhcCCCC
Confidence 99999999999999999988777754
No 8
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.94 E-value=8e-26 Score=205.22 Aligned_cols=159 Identities=58% Similarity=0.937 Sum_probs=138.3
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
+|+++++...++++++++.+.|.|+++||+|||+++|||++|++...|.++...+|.++|||++|+|+++|++|++|++|
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG 81 (368)
T cd08300 2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG 81 (368)
T ss_pred cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence 57888888888889999999999999999999999999999999999987655678999999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCcccccccccc--------------------------ccceeeeeeeecccccccCCCCCh
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------------------TQLFLTSNVTISDFNMGYSMTGSL 235 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~g~~~~~~~~~~~~~~~~~~~s~ 235 (261)
|||++.+...|+.|.+|..+..+.|..... .|++.++..+......++|+++++
T Consensus 82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~ 161 (368)
T cd08300 82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPL 161 (368)
T ss_pred CEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCCCh
Confidence 999988878999999999999999975421 124444445555778899999999
Q ss_pred hhhccccchHHHHHHHHhcccCccc
Q psy7798 236 ERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 236 ~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++++.++.+++|||+++.+.+++++
T Consensus 162 ~~aa~l~~~~~ta~~a~~~~~~~~~ 186 (368)
T cd08300 162 DKVCLLGCGVTTGYGAVLNTAKVEP 186 (368)
T ss_pred hhhhhhccchhhhHHHHHHhcCCCC
Confidence 9999999999999999988777753
No 9
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.93 E-value=1.4e-25 Score=203.92 Aligned_cols=157 Identities=31% Similarity=0.544 Sum_probs=134.0
Q ss_pred eeEEEEecCC--------CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCC
Q psy7798 103 CKAAVAWEPK--------KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEG 174 (261)
Q Consensus 103 ~~~~~~~~~g--------~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~ 174 (261)
||++++.++| +.+++++.+.|.|+++||+|||.++|||++|++...|.++ ..+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCC
Confidence 6778877765 3489999999999999999999999999999999998765 346889999999999999999
Q ss_pred CCCCCCCCEEEEeeccCCCCCcccccCcccccccccc--------------------------ccceeeeeeeecccccc
Q psy7798 175 VTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------------------TQLFLTSNVTISDFNMG 228 (261)
Q Consensus 175 v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~g~~~~~~~~~~~~~~ 228 (261)
|++|++||||++.+...|+.|..|..+..+.|..... .|++.++..+......+
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~ 159 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVK 159 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEE
Confidence 9999999999987767899999999999999976421 13444444555577889
Q ss_pred cCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 229 YSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 229 ~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+|+++++++||.++++++|||+++.+.+++++
T Consensus 160 lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~ 191 (371)
T cd08281 160 IDKDVPLEIAALFGCAVLTGVGAVVNTAGVRP 191 (371)
T ss_pred CCCCCChHHhhhhcchHHHHHHHHHhccCCCC
Confidence 99999999999999999999999988887764
No 10
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.93 E-value=1.4e-25 Score=203.28 Aligned_cols=160 Identities=22% Similarity=0.252 Sum_probs=134.1
Q ss_pred cceeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy7798 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 99 ~~~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
.|+.++++...+..+.+++.+++.|.|+++||+|||.++|||++|++.+.|.++...+|.++|||++|+|+++|++|++|
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~ 88 (360)
T PLN02586 9 HPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKF 88 (360)
T ss_pred chhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCcc
Confidence 45667777777776778888999999999999999999999999999998876544568899999999999999999999
Q ss_pred CCCCEEEEee-ccCCCCCcccccCcccccccccc------------ccceeeeeeeecccccccCCCCChhhhccccchH
Q psy7798 179 APGDHVIPLY-IPQCNECKFCKSSKTNLCTKIRT------------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSF 245 (261)
Q Consensus 179 ~vGDrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~ 245 (261)
++||||++.+ ..+|+.|.+|..+..+.|..... .|++.++.++......++|+++++++||.+++++
T Consensus 89 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~ 168 (360)
T PLN02586 89 KEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAG 168 (360)
T ss_pred CCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcch
Confidence 9999998543 35799999999999999986421 2445455555557788999999999999999999
Q ss_pred HHHHHHHhcccCc
Q psy7798 246 QTTHFAVIKRRDF 258 (261)
Q Consensus 246 ~TA~~aL~~~a~L 258 (261)
+|||+++...+.+
T Consensus 169 ~ta~~al~~~~~~ 181 (360)
T PLN02586 169 ITVYSPMKYYGMT 181 (360)
T ss_pred HHHHHHHHHhccc
Confidence 9999999765544
No 11
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.93 E-value=1.5e-25 Score=200.07 Aligned_cols=139 Identities=24% Similarity=0.297 Sum_probs=118.6
Q ss_pred eeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCC-CCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~-~~~~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++.+...+++ +++.+++.|.|++|||+|||+|+|||+.|++...|. .+...+|+++|.|++|+|+++|++|+.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 577888877755 889999999999999999999999999999999997 34456899999999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||||+... ..| ..|+++++..++.....++|+++|+++||++|++++|||++|+..++|+
T Consensus 81 ~GdrV~~~~-~~~------------------~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~ 141 (326)
T COG0604 81 VGDRVAALG-GVG------------------RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLK 141 (326)
T ss_pred CCCEEEEcc-CCC------------------CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999864 110 1144555555555788999999999999999999999999999988887
Q ss_pred c
Q psy7798 260 K 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 142 ~ 142 (326)
T COG0604 142 P 142 (326)
T ss_pred C
Confidence 4
No 12
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.93 E-value=2.4e-25 Score=201.32 Aligned_cols=158 Identities=28% Similarity=0.472 Sum_probs=137.7
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
+||++++.++++++++++.+.|.|+++||+|||.++|+|++|++...|.++ ..+|.++|||++|+|+++|++|++|++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccCCC
Confidence 589999999998899999999999999999999999999999999988764 3467899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccc------------------cccceeeeeeeecccccccCCCCChhhhccccc
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIR------------------TTQLFLTSNVTISDFNMGYSMTGSLERGSKRDN 243 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~ 243 (261)
|||++.+..+|+.|..|..+..+.|.... ..|++.++..+......++|+++++++||.+++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~ 159 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGC 159 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhhcc
Confidence 99998888899999999999999997421 124455555555577889999999999999999
Q ss_pred hHHHHHHHHhcccCccc
Q psy7798 244 SFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 244 ~~~TA~~aL~~~a~L~~ 260 (261)
+++|||+++.+.+++++
T Consensus 160 ~~~ta~~~~~~~~~~~~ 176 (358)
T TIGR03451 160 GVMAGLGAAVNTGGVKR 176 (358)
T ss_pred cchhhHHHHHhccCCCC
Confidence 99999999988777653
No 13
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.93 E-value=3.6e-25 Score=200.74 Aligned_cols=158 Identities=49% Similarity=0.827 Sum_probs=137.9
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
.|+++++.+.+++++++++|.|.|+++||+|||.++|+|++|++...|.++ ..+|.++|||++|+|+++|++|++|++|
T Consensus 2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G 80 (365)
T cd08277 2 KCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKPG 80 (365)
T ss_pred ccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCCC
Confidence 478888888887799999999999999999999999999999999998765 4567899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCcccccccccc-------------------------ccceeeeeeeecccccccCCCCChh
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRT-------------------------TQLFLTSNVTISDFNMGYSMTGSLE 236 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~g~~~~~~~~~~~~~~~~~~~s~~ 236 (261)
|||++.+..+|++|.+|..+..+.|..... .|++.++........+++|++++++
T Consensus 81 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~~~ 160 (365)
T cd08277 81 DKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLE 160 (365)
T ss_pred CEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCCHH
Confidence 999998888999999999999999975421 2344455555557888999999999
Q ss_pred hhccccchHHHHHHHHhcccCccc
Q psy7798 237 RGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 237 eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++|.++++++|||+++.+.+++++
T Consensus 161 ~aa~l~~~~~ta~~~~~~~~~~~~ 184 (365)
T cd08277 161 HVCLLGCGFSTGYGAAWNTAKVEP 184 (365)
T ss_pred HhhHhcchhHHHHHHHHhhcCCCC
Confidence 999999999999999988877764
No 14
>PLN02827 Alcohol dehydrogenase-like
Probab=99.93 E-value=5.7e-25 Score=200.49 Aligned_cols=160 Identities=36% Similarity=0.632 Sum_probs=136.2
Q ss_pred CcceeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy7798 98 PQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTS 177 (261)
Q Consensus 98 ~~~~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~ 177 (261)
+....|+++++.++++.+++.+.+.|.|+++||+|||.++|||++|++...|.. .+|.++|||++|+|+++|++|++
T Consensus 8 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~ 84 (378)
T PLN02827 8 PNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTE 84 (378)
T ss_pred cccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcc
Confidence 344569999998888779999999999999999999999999999999987742 34689999999999999999999
Q ss_pred CCCCCEEEEeeccCCCCCcccccCcccccccccc--------------------------ccceeeeeeeecccccccCC
Q psy7798 178 VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------------------TQLFLTSNVTISDFNMGYSM 231 (261)
Q Consensus 178 ~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~g~~~~~~~~~~~~~~~~~ 231 (261)
|++||||++.+..+|++|.+|..+..+.|..... .|++.++..+......++|+
T Consensus 85 ~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~ 164 (378)
T PLN02827 85 FEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDP 164 (378)
T ss_pred cCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCC
Confidence 9999999998888999999999999999976321 13444444555577889999
Q ss_pred CCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 232 TGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 232 ~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+++++++|.+++++.|||+++.+.+++++
T Consensus 165 ~l~~~~aa~l~~~~~~a~~~~~~~~~~~~ 193 (378)
T PLN02827 165 LAPLHKICLLSCGVAAGLGAAWNVADVSK 193 (378)
T ss_pred CCCHHHhhhhcchhHhhHHHHHhhcCCCC
Confidence 99999999999999999998877777653
No 15
>KOG0022|consensus
Probab=99.93 E-value=2.8e-25 Score=190.62 Aligned_cols=163 Identities=53% Similarity=0.846 Sum_probs=146.5
Q ss_pred CcceeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy7798 98 PQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTS 177 (261)
Q Consensus 98 ~~~~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~ 177 (261)
..+.++|+++.+++++||.++++..++|+.+||+||+.++|+|++|.+.+.|..+...+|.++|||++|+|..||++|++
T Consensus 3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~ 82 (375)
T KOG0022|consen 3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT 82 (375)
T ss_pred CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence 35578999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred CCCCCEEEEeeccCCCCCcccccCcccccccccccc--------------------------ceeeeeeeec-ccccccC
Q psy7798 178 VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ--------------------------LFLTSNVTIS-DFNMGYS 230 (261)
Q Consensus 178 ~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------g~~~~~~~~~-~~~~~~~ 230 (261)
+++||+|+......|+.|.+|..+..|.|...+... .++++|.+++ ...++++
T Consensus 83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId 162 (375)
T KOG0022|consen 83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID 162 (375)
T ss_pred cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence 999999999998999999999999999997653221 1445565555 6678888
Q ss_pred CCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 231 MTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 231 ~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+...++.++-+.+++.|.|-|..+.|++++
T Consensus 163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~ 192 (375)
T KOG0022|consen 163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEP 192 (375)
T ss_pred CCCChhheeEeeccccccchhhhhhcccCC
Confidence 999999999999999999999999999875
No 16
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.92 E-value=1.3e-24 Score=194.82 Aligned_cols=155 Identities=23% Similarity=0.298 Sum_probs=131.9
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++.+++ .+++++++.|.|+++||+|||.++|+|++|++...|.++. ...|.++|||++|+|+++|++|++|++|
T Consensus 1 mka~~~~~~~-~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDR-TVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCC-ceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 6788887665 4899999999999999999999999999999998776432 2347899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCcccccccccc------ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRT------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
|||+..+...|+.|..|..+..+.|..... .|++.++..+......++|+++++++|++++.+++|||++|. .
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~-~ 158 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALR-R 158 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHH-h
Confidence 999998888999999999999999986542 244555555555788999999999999999999999999984 4
Q ss_pred cCcc
Q psy7798 256 RDFE 259 (261)
Q Consensus 256 a~L~ 259 (261)
++++
T Consensus 159 ~~~~ 162 (339)
T cd08239 159 VGVS 162 (339)
T ss_pred cCCC
Confidence 5554
No 17
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.92 E-value=1.8e-24 Score=195.69 Aligned_cols=159 Identities=25% Similarity=0.243 Sum_probs=135.9
Q ss_pred ceeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 100 VIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 100 ~~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
...+++++...+++++.+.+++.|.|+++||+|||.++|||++|++...|.++...+|.++|||++|+|+++|++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~ 86 (357)
T PLN02514 7 EKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFT 86 (357)
T ss_pred CceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCccccc
Confidence 34588999999999899999999999999999999999999999999988765445678999999999999999999999
Q ss_pred CCCEEEEee-ccCCCCCcccccCccccccccc------------cccceeeeeeeecccccccCCCCChhhhccccchHH
Q psy7798 180 PGDHVIPLY-IPQCNECKFCKSSKTNLCTKIR------------TTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQ 246 (261)
Q Consensus 180 vGDrV~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~ 246 (261)
+||+|+..+ ...|++|..|..+..+.|.... ..|++.++.++......++|++++++++|+++.++.
T Consensus 87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ 166 (357)
T PLN02514 87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGV 166 (357)
T ss_pred CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHH
Confidence 999997543 3479999999999999997631 124555555555577889999999999999999999
Q ss_pred HHHHHHhcccCc
Q psy7798 247 TTHFAVIKRRDF 258 (261)
Q Consensus 247 TA~~aL~~~a~L 258 (261)
|||++|...+.+
T Consensus 167 ta~~al~~~~~~ 178 (357)
T PLN02514 167 TVYSPLSHFGLK 178 (357)
T ss_pred HHHHHHHHcccC
Confidence 999999766544
No 18
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.92 E-value=1.7e-24 Score=198.27 Aligned_cols=155 Identities=21% Similarity=0.293 Sum_probs=127.9
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCCC-------CCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPPK-------AGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEG 174 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~~-------~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~ 174 (261)
.|+++++.+++. +++++++.|.|+ +|||+|||.++|||++|++.+.|.++ ..+|.++|||++|+|+++|++
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD 79 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence 478898888775 889999988874 68999999999999999999998754 346899999999999999999
Q ss_pred CCCCCCCCEEEEeeccCCCCCcccccCcccccccccc--------------ccceeeeeeeecc---cccccCCCCCh--
Q psy7798 175 VTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------TQLFLTSNVTISD---FNMGYSMTGSL-- 235 (261)
Q Consensus 175 v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~---~~~~~~~~~s~-- 235 (261)
|++|++||||++.+...|+.|.+|..+..+.|..... ..|.+++|+.++. ..+++|++++.
T Consensus 80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~~ 159 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQALE 159 (393)
T ss_pred cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcccccc
Confidence 9999999999988878899999999999999986320 1255566666663 47889987653
Q ss_pred --hhhccccchHHHHHHHHhcccCcc
Q psy7798 236 --ERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 236 --~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
++++++...++|||+++. +++++
T Consensus 160 ~~~~~a~l~~~~~ta~~a~~-~~~~~ 184 (393)
T TIGR02819 160 KIRDLTMLSDIFPTGYHGAV-TAGVG 184 (393)
T ss_pred cccceeeeccHHHHHHHHHH-hcCCC
Confidence 457888889999999984 56554
No 19
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.91 E-value=7.3e-24 Score=193.02 Aligned_cols=152 Identities=22% Similarity=0.253 Sum_probs=126.7
Q ss_pred EEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEE
Q psy7798 105 AAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHV 184 (261)
Q Consensus 105 ~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV 184 (261)
++...+.++.+.+.+++.|.|+++||+|||.++|||++|++...|.++...+|.++|||++|+|+++|++|++|++||||
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV 88 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV 88 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence 44455555668888889999999999999999999999999999876444567899999999999999999999999999
Q ss_pred EEeec-cCCCCCcccccCcccccccccc------------ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHH
Q psy7798 185 IPLYI-PQCNECKFCKSSKTNLCTKIRT------------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFA 251 (261)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~a 251 (261)
+..+. ..|+.|.+|..+..+.|+.... .|++.++..+......++|+++++++||.++++++|||++
T Consensus 89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~a 168 (375)
T PLN02178 89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSP 168 (375)
T ss_pred EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHH
Confidence 85443 3699999999999999986531 2445555555557788999999999999999999999999
Q ss_pred Hhccc
Q psy7798 252 VIKRR 256 (261)
Q Consensus 252 L~~~a 256 (261)
+...+
T Consensus 169 l~~~~ 173 (375)
T PLN02178 169 MKYYG 173 (375)
T ss_pred HHHhC
Confidence 86543
No 20
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.91 E-value=1.9e-23 Score=190.17 Aligned_cols=159 Identities=47% Similarity=0.761 Sum_probs=137.9
Q ss_pred eeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 101 ~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
..|+++++..+++++++++.|.|.|.++||+|||.++|+|++|++...|.++ ..+|.++|||++|+|+++|++|+.|++
T Consensus 6 ~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 84 (373)
T cd08299 6 IKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVKP 84 (373)
T ss_pred ceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCCC
Confidence 3588999888887899999999999999999999999999999999988764 346789999999999999999999999
Q ss_pred CCEEEEeeccCCCCCcccccCcccccccccc--------------------------ccceeeeeeeecccccccCCCCC
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------------------TQLFLTSNVTISDFNMGYSMTGS 234 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~g~~~~~~~~~~~~~~~~~~~s 234 (261)
||+|++++..+|+.|.+|..+..+.|..... .|++.++..+......++|++++
T Consensus 85 Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l~ 164 (373)
T cd08299 85 GDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAP 164 (373)
T ss_pred CCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCCC
Confidence 9999988888999999999999999975431 23444555555577889999999
Q ss_pred hhhhccccchHHHHHHHHhcccCccc
Q psy7798 235 LERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 235 ~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+++++.++++++|||+++...+++++
T Consensus 165 ~~~aa~~~~~~~ta~~~~~~~~~~~~ 190 (373)
T cd08299 165 LEKVCLIGCGFSTGYGAAVNTAKVTP 190 (373)
T ss_pred hHHhheeccchHHHHHHHHhccCCCC
Confidence 99999999999999999988887764
No 21
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.91 E-value=1.2e-23 Score=188.23 Aligned_cols=146 Identities=21% Similarity=0.277 Sum_probs=124.6
Q ss_pred CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEee-ccCC
Q psy7798 114 PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLY-IPQC 192 (261)
Q Consensus 114 ~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~-~~~~ 192 (261)
.++++++|.|.|+++||+|||.++|+|++|++...|.++...+|.++|||++|+|+++|++|++|++||||+..+ ...|
T Consensus 14 ~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c 93 (329)
T TIGR02822 14 PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTC 93 (329)
T ss_pred CceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcC
Confidence 488999999999999999999999999999999999776444578999999999999999999999999997654 3479
Q ss_pred CCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 193 NECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+.|.+|..+..+.|+.... .|++..+..++.....++|+++++++++.++.+++|||+++. .+++++
T Consensus 94 ~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~-~~~~~~ 165 (329)
T TIGR02822 94 GVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALL-RASLPP 165 (329)
T ss_pred CCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHH-hcCCCC
Confidence 9999999999999986432 244555555555788999999999999999999999999995 566653
No 22
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.90 E-value=5.1e-23 Score=185.87 Aligned_cols=147 Identities=23% Similarity=0.355 Sum_probs=117.8
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC---CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE---GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~---~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++...+..+++.++|.|+|+++||+|||+++|||++|++.+.|.++. ...|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 567777654444999999999999999999999999999999999987542 235789999999999999999 9999
Q ss_pred CCCEEEEeeccCCCCCcccccCcccccccccc--------ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHH
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFA 251 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~a 251 (261)
+||||++.+...|+.|.+|..+..+.|..... .|++.++.++....++++|++++ +++++..++.+++.+
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~--~~a~~~~p~~~~~~a 157 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA--DVGVLLEPLSVVEKA 157 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC--cceeecchHHHHHHH
Confidence 99999988878899999999999999975321 24455555666688899999998 445555555555444
Q ss_pred H
Q psy7798 252 V 252 (261)
Q Consensus 252 L 252 (261)
+
T Consensus 158 ~ 158 (355)
T cd08230 158 I 158 (355)
T ss_pred H
Confidence 4
No 23
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.90 E-value=1.1e-22 Score=183.90 Aligned_cols=155 Identities=23% Similarity=0.347 Sum_probs=133.6
Q ss_pred eEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCC------
Q psy7798 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTS------ 177 (261)
Q Consensus 104 ~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~------ 177 (261)
|++++.++++.+++.+.+.|.|+++||+|+|.++|+|+.|++...|.++...+|.++|+|++|+|+++|++|++
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 57888888877999999999999999999999999999999999997753456789999999999999999986
Q ss_pred CCCCCEEEEeeccCCCCCcccccCcccccccccc-----------ccceeeeeeeecc--cccccCCCCChhhhccccch
Q psy7798 178 VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT-----------TQLFLTSNVTISD--FNMGYSMTGSLERGSKRDNS 244 (261)
Q Consensus 178 ~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~~~--~~~~~~~~~s~~eaA~lp~~ 244 (261)
|++||+|++.+..+|+.|.+|..+..+.|..... ..|.+++++.++. ...++|+++++++++.++.+
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~ 161 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCA 161 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHhcCH
Confidence 9999999999888999999999999999975422 1244556655553 58899999999999999999
Q ss_pred HHHHHHHHhcccCc
Q psy7798 245 FQTTHFAVIKRRDF 258 (261)
Q Consensus 245 ~~TA~~aL~~~a~L 258 (261)
++|||++|.+.+.+
T Consensus 162 ~~ta~~al~~~~~~ 175 (361)
T cd08231 162 LATVLAALDRAGPV 175 (361)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999776655
No 24
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.89 E-value=1.3e-22 Score=183.99 Aligned_cols=158 Identities=35% Similarity=0.528 Sum_probs=135.1
Q ss_pred eeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 101 ~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
|+|+++++.++++++++.+.+.|.++++||+|||.++|+|++|++...|.++ ...|.++|+|++|+|+++|+++.+|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 4689999988777789999999999999999999999999999999998765 345789999999999999999999999
Q ss_pred CCEEEEeeccCCCCCcccccCcccccccccc----------------------------ccceeeeeeeecccccccCCC
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIRT----------------------------TQLFLTSNVTISDFNMGYSMT 232 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~g~~~~~~~~~~~~~~~~~~ 232 (261)
||+|++.. ..|+.|.+|..+..+.|..... .|++.++.........++|++
T Consensus 80 Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~ 158 (365)
T cd08278 80 GDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD 158 (365)
T ss_pred CCEEEEcc-cCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence 99999866 4899999999999999864321 133444444555778899999
Q ss_pred CChhhhccccchHHHHHHHHhcccCccc
Q psy7798 233 GSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 233 ~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+++++++.++++++|||+++++.+++++
T Consensus 159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~ 186 (365)
T cd08278 159 VPLELLAPLGCGIQTGAGAVLNVLKPRP 186 (365)
T ss_pred CCHHHhhhhcchhhhhhHHHhhhcCCCC
Confidence 9999999999999999999988887764
No 25
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.89 E-value=9.5e-23 Score=183.32 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=121.7
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHc-CCCC--CCCCCcccccceEEEEEEeCCCCCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLD-GLDS--EGKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~-g~~~--~~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
.++++++.+++. +++++.+.| ++++||+|||.++|||++|++... |.++ ...+|.++|||++|+|+++ +|++|
T Consensus 4 ~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~ 79 (343)
T PRK09880 4 KTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGL 79 (343)
T ss_pred cceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccC
Confidence 467888887766 889998886 689999999999999999999875 4432 2346899999999999999 78999
Q ss_pred CCCCEEEEeeccCCCCCcccccCcccccccccc----------ccceeeeeeeecccccccCCCCChhhhccccchHHHH
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT----------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTT 248 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA 248 (261)
++||||+..+..+|+.|.+|..+..+.|..... .|++.++.++.....+++|+++++++++ +...++||
T Consensus 80 ~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~~~a 158 (343)
T PRK09880 80 KEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPLAVA 158 (343)
T ss_pred CCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHHHHH
Confidence 999999988888999999999999999986321 2444444455557788999999997655 66788999
Q ss_pred HHHHhccc
Q psy7798 249 HFAVIKRR 256 (261)
Q Consensus 249 ~~aL~~~a 256 (261)
|++|...+
T Consensus 159 ~~al~~~~ 166 (343)
T PRK09880 159 IHAAHQAG 166 (343)
T ss_pred HHHHHhcC
Confidence 99996543
No 26
>KOG1197|consensus
Probab=99.89 E-value=7.3e-23 Score=171.16 Aligned_cols=140 Identities=25% Similarity=0.221 Sum_probs=123.2
Q ss_pred cceeeeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy7798 99 QVIECKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVT 176 (261)
Q Consensus 99 ~~~~~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~ 176 (261)
.|+..+.+++++.|++ +++++.|.|+|.++|+.||.+|+|||+.|++...|.|...+.|.++|.|++|+|++||++|+
T Consensus 5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt 84 (336)
T KOG1197|consen 5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT 84 (336)
T ss_pred CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCcc
Confidence 4556788889888865 89999999999999999999999999999999999996677899999999999999999999
Q ss_pred CCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 177 SVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 177 ~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
++++||||+-..+ .|.++.+...+....+++|+.+++.+||++.+.++|||.-|++..
T Consensus 85 drkvGDrVayl~~----------------------~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y 142 (336)
T KOG1197|consen 85 DRKVGDRVAYLNP----------------------FGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAY 142 (336)
T ss_pred ccccccEEEEecc----------------------chhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999987642 144555555555888999999999999999999999999999988
Q ss_pred Cccc
Q psy7798 257 DFEK 260 (261)
Q Consensus 257 ~L~~ 260 (261)
++++
T Consensus 143 ~vkp 146 (336)
T KOG1197|consen 143 NVKP 146 (336)
T ss_pred CCCC
Confidence 8875
No 27
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.89 E-value=2.9e-22 Score=181.50 Aligned_cols=157 Identities=32% Similarity=0.552 Sum_probs=137.0
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.++++++++.+++.|.+++++|+|+|.++++|+.|++...|.++ ..+|.++|+|++|+|+++|+++..|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 68899998888899999999999999999999999999999999988766 34567899999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCccccccccc------------------------cccceeeeee-eecccccccCCCCChhh
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIR------------------------TTQLFLTSNV-TISDFNMGYSMTGSLER 237 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~g~~~~~~-~~~~~~~~~~~~~s~~e 237 (261)
+|++.+..+|++|.+|..+..+.|.... ...|.+++++ ........+|+++++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~ 159 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDR 159 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHH
Confidence 9999988899999999999999997542 1124444554 44478889999999999
Q ss_pred hccccchHHHHHHHHhcccCccc
Q psy7798 238 GSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 238 aA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++.++++++|||+++++.+++++
T Consensus 160 aa~~~~~~~ta~~~~~~~~~~~~ 182 (363)
T cd08279 160 AALLGCGVTTGVGAVVNTARVRP 182 (363)
T ss_pred eehhcchhHHHHHHHHhccCCCC
Confidence 99999999999999988887754
No 28
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.89 E-value=3.1e-22 Score=182.93 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=133.9
Q ss_pred eeEEEEecCCCCcEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++.+++ .+++.+++.|.| ++++|+|++.++++|++|++...|.++...+|.++|+|++|+|+++|++|++|++|
T Consensus 1 m~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKG-DVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCC-CceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 6788887664 489999999988 49999999999999999999999987655567899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccccc------------------------cceeeeeeeec-c--cccccCCCCC
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRTT------------------------QLFLTSNVTIS-D--FNMGYSMTGS 234 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~g~~~~~~~~~-~--~~~~~~~~~s 234 (261)
|+|++.+...|++|.+|..+..+.|...... .+.+++++.++ . ...++|++++
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~ 159 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLS 159 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCCCC
Confidence 9999988778999999999999999753211 24556666665 4 6789999999
Q ss_pred hhhhccccchHHHHHHHHhcccCccc
Q psy7798 235 LERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 235 ~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+++|++++..++|||++| ..+++++
T Consensus 160 ~~~aa~l~~~~~ta~~~l-~~~~~~~ 184 (386)
T cd08283 160 DEKALFLSDILPTGYHAA-ELAEVKP 184 (386)
T ss_pred HHHHhhhccchhhhHHHH-hhccCCC
Confidence 999999999999999999 7777754
No 29
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.88 E-value=4.1e-22 Score=179.60 Aligned_cols=152 Identities=26% Similarity=0.356 Sum_probs=126.0
Q ss_pred EEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCC-CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEE
Q psy7798 106 AVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHV 184 (261)
Q Consensus 106 ~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~-~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV 184 (261)
+++.++++++++++.|.|.|+++||+|||.++|+|++|++...+. .+...+|.++|||++|+|+++|++|+.+ +||||
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 345667777899999999999999999999999999999987443 3334567899999999999999999887 99999
Q ss_pred EEeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCC------CCChhhhccccchHHHHHHHHh
Q psy7798 185 IPLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSM------TGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~------~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
++.+..+|+.|..|..+..+.|..... .|++.++..+......++|+ +++++++++++.++.|||+++.
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~ 160 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV 160 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH
Confidence 998888999999999999999975432 24455555555577888888 8999999999999999999985
Q ss_pred cccCcc
Q psy7798 254 KRRDFE 259 (261)
Q Consensus 254 ~~a~L~ 259 (261)
.++++
T Consensus 161 -~~~~~ 165 (349)
T TIGR03201 161 -QAGLK 165 (349)
T ss_pred -hcCCC
Confidence 45554
No 30
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.88 E-value=7e-22 Score=179.20 Aligned_cols=156 Identities=47% Similarity=0.749 Sum_probs=135.0
Q ss_pred eEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCE
Q psy7798 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDH 183 (261)
Q Consensus 104 ~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDr 183 (261)
+++++.+.++++++.+.+.|.+++++|+|+|.++++|+.|++...|.++ ...|.++|||++|+|+++|++|+.+++||+
T Consensus 2 ~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (365)
T cd05279 2 KAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGDK 80 (365)
T ss_pred ceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCCE
Confidence 5677888777799999999999999999999999999999999988765 345679999999999999999999999999
Q ss_pred EEEeeccCCCCCcccccCccccccccccc--------------------------cceeeeeeeecccccccCCCCChhh
Q psy7798 184 VIPLYIPQCNECKFCKSSKTNLCTKIRTT--------------------------QLFLTSNVTISDFNMGYSMTGSLER 237 (261)
Q Consensus 184 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~g~~~~~~~~~~~~~~~~~~~s~~e 237 (261)
|++.+...|++|.+|..+..+.|...... +++.++..+..+.+.++|+++++++
T Consensus 81 Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~~ 160 (365)
T cd05279 81 VIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEK 160 (365)
T ss_pred EEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHHH
Confidence 99988788999999999999999754321 3444555555578899999999999
Q ss_pred hccccchHHHHHHHHhcccCccc
Q psy7798 238 GSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 238 aA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++.++++++|||++|.+.+++++
T Consensus 161 a~~~~~~~~ta~~al~~~~~~~~ 183 (365)
T cd05279 161 VCLIGCGFSTGYGAAVNTAKVTP 183 (365)
T ss_pred hhHhccchhHHHHHHHhccCCCC
Confidence 99999999999999988887764
No 31
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.88 E-value=9.5e-22 Score=174.68 Aligned_cols=157 Identities=32% Similarity=0.507 Sum_probs=134.5
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++..+++.+.+.+.+.|.+.+++|+|+|+++++|+.|++...|.++....|.++|+|++|+|+.+|+++++|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 57888877666799999999999999999999999999999999998776555678999999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+|+++....|+.|.+|..+..+.|..... .|++.++..+.......+|++++++++++++.+++|||++|.. ++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~ 159 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AG 159 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hC
Confidence 99998888899999999999999976422 1334445555557788999999999999999999999999976 66
Q ss_pred ccc
Q psy7798 258 FEK 260 (261)
Q Consensus 258 L~~ 260 (261)
+++
T Consensus 160 ~~~ 162 (332)
T cd08259 160 VKK 162 (332)
T ss_pred CCC
Confidence 653
No 32
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.88 E-value=5.1e-22 Score=178.02 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=134.4
Q ss_pred eeEEEEecCCCCcEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++.+++. +.+.+.+.|.| .++||+|||.++|+|+.|++...|.++...+|.++|+|++|+|+++|++|++|++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 56788877665 88889999999 99999999999999999999999988766668899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccc-------cccceeeeeeeecc---cccccCCCCChhhhccccchHHHHHHH
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIR-------TTQLFLTSNVTISD---FNMGYSMTGSLERGSKRDNSFQTTHFA 251 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~---~~~~~~~~~s~~eaA~lp~~~~TA~~a 251 (261)
|+|++.+...|+.|.+|..+....|.... ...|.+++++.++. ...++|++++++++++++.+++|||++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~ 159 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHG 159 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeeh
Confidence 99999888899999999999998887543 12355666666663 678999999999999999999999999
Q ss_pred HhcccCccc
Q psy7798 252 VIKRRDFEK 260 (261)
Q Consensus 252 L~~~a~L~~ 260 (261)
+ ..+++++
T Consensus 160 ~-~~~~~~~ 167 (347)
T cd05278 160 A-ELAGIKP 167 (347)
T ss_pred h-hhcCCCC
Confidence 8 6677653
No 33
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=5.2e-22 Score=179.21 Aligned_cols=148 Identities=26% Similarity=0.346 Sum_probs=121.1
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCc-ccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC-VLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~-~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++....+++..++++.+.|.++++||+|||.++|||.+|++.+.|..+....+. ++|||++|+|+++| .++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 45666666665444666666678999999999999999999999999766555555 99999999999999 77889999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccc---------cccceeeeeeeec-cccccc-CCCCChhhhccccchHHHHHH
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIR---------TTQLFLTSNVTIS-DFNMGY-SMTGSLERGSKRDNSFQTTHF 250 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~-~~~~~~-~~~~s~~eaA~lp~~~~TA~~ 250 (261)
|||++.+..+|+.|.+|..+.++.|.... ..+|++++|+.++ +.+..+ |+++ ..++|++.-.+.|||+
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~~~ 158 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATAYH 158 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhhhh
Confidence 99999999999999999999999999432 1246777887777 566655 6877 7777788899999977
Q ss_pred HH
Q psy7798 251 AV 252 (261)
Q Consensus 251 aL 252 (261)
+.
T Consensus 159 ~~ 160 (350)
T COG1063 159 GH 160 (350)
T ss_pred hh
Confidence 73
No 34
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.88 E-value=1.2e-21 Score=175.36 Aligned_cols=156 Identities=26% Similarity=0.331 Sum_probs=132.3
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.++++.+++++++.|.++++||+|+|.++|+|+.|++...|.++....|.++|||++|+|+++|+++++|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 68899988876799999999999999999999999999999999988765445678999999999999999999999999
Q ss_pred EEEEee-ccCCCCCcccccCccccccccccc----cceeeeeeee-cccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 183 HVIPLY-IPQCNECKFCKSSKTNLCTKIRTT----QLFLTSNVTI-SDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 183 rV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
+|++.+ ...|+.|..|..+..+.|...... .+.+++++.+ .....++|+++++++++.++.+++|||+++...
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~- 159 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNS- 159 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHhc-
Confidence 998754 468999999999999999865422 2444455444 477889999999999999999999999998543
Q ss_pred Ccc
Q psy7798 257 DFE 259 (261)
Q Consensus 257 ~L~ 259 (261)
+++
T Consensus 160 ~~~ 162 (333)
T cd08296 160 GAK 162 (333)
T ss_pred CCC
Confidence 554
No 35
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.87 E-value=2.2e-21 Score=173.16 Aligned_cols=156 Identities=24% Similarity=0.331 Sum_probs=134.8
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.++++++++++.+.|.++++||+|++.++|+|+.|++...|.++...+|.++|+|++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 67888888888899999999999999999999999999999999998776556678899999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+|++.....|+.|.+|..+..+.|+.... .|++.++.........++|+++++.+++.++.+++|||+++... +
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~ 159 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-G 159 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-C
Confidence 99998778999999999999999977543 23344444555577889999999999999999999999998654 5
Q ss_pred cc
Q psy7798 258 FE 259 (261)
Q Consensus 258 L~ 259 (261)
++
T Consensus 160 ~~ 161 (334)
T PRK13771 160 VK 161 (334)
T ss_pred CC
Confidence 54
No 36
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.87 E-value=1.4e-21 Score=175.97 Aligned_cols=155 Identities=30% Similarity=0.383 Sum_probs=127.5
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCC-C--CC--------CCCCcccccceEEEEEEe
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-D--SE--------GKFPCVLGHEGSGIVESV 171 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~-~--~~--------~~~p~~lG~E~~G~V~~v 171 (261)
|+++++.+++. +++++++.|+|+++||+||+.++|+|+.|++...+. + +. ...|.++|+|++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 67888877664 999999999999999999999999999999876542 1 10 125789999999999999
Q ss_pred CCCCCCCCCCCEEEEeeccCCCCCcccccCcccccccccc------ccceeeeeeeecccccccCCCCChhhhccccchH
Q psy7798 172 GEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSF 245 (261)
Q Consensus 172 G~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~ 245 (261)
|++|++|++||+|++.....|+.|.+|..+..+.|..... .|++.++.........++|+++++++++.+ ..+
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~~ 158 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-EPL 158 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-cHH
Confidence 9999999999999998888999999999999999976432 244445555555788999999999999876 678
Q ss_pred HHHHHHHhcccCccc
Q psy7798 246 QTTHFAVIKRRDFEK 260 (261)
Q Consensus 246 ~TA~~aL~~~a~L~~ 260 (261)
.|||++| ..+++++
T Consensus 159 ~ta~~~l-~~~~~~~ 172 (351)
T cd08233 159 AVAWHAV-RRSGFKP 172 (351)
T ss_pred HHHHHHH-HhcCCCC
Confidence 9999999 6776653
No 37
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.87 E-value=2.2e-21 Score=175.89 Aligned_cols=157 Identities=30% Similarity=0.431 Sum_probs=135.9
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCC---CC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTS---VA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~---~~ 179 (261)
|+++++..++.++.+.+.+.|.++++||+|+|.++|+|+.|+....|.++. .+|.++|+|++|+|+.+|+++++ |+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 678899888777899999999999999999999999999999999887764 55789999999999999999988 99
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccc--------------------------cccceeeeeeee-cccccccCCC
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIR--------------------------TTQLFLTSNVTI-SDFNMGYSMT 232 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~g~~~~~~~~-~~~~~~~~~~ 232 (261)
+||+|++.+..+|+.|.+|..+..+.|.... ...+++++++.+ .....++|++
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~ 159 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPES 159 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEECCCC
Confidence 9999999877899999999999999988653 123455555555 4788999999
Q ss_pred CChhhhccccchHHHHHHHHhcccCccc
Q psy7798 233 GSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 233 ~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++++++|++++.++|||++|.+.+++++
T Consensus 160 is~~~aa~l~~~~~tA~~~l~~~~~~~~ 187 (367)
T cd08263 160 LDYTESAVLGCAGFTAYGALKHAADVRP 187 (367)
T ss_pred CCHHHHhHhcchHHHHHHHHHhcccCCC
Confidence 9999999999999999999988777653
No 38
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.87 E-value=2.7e-21 Score=174.15 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=132.9
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.+++. +.+.+.+.|.+.++||+|||.++|+|++|++...|.++....|.++|||++|+|+++|+++++|++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 67888888775 88888888889999999999999999999999888765445678999999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc-------ccceeeeeeeecc---cccccCCCCChhhhccccchHHHHHHHH
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT-------TQLFLTSNVTISD---FNMGYSMTGSLERGSKRDNSFQTTHFAV 252 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~---~~~~~~~~~s~~eaA~lp~~~~TA~~aL 252 (261)
+|++.+..+|+.|..|..+..+.|..... ..|.+++++.++. ...++|+++++++++.++..++|||+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~ 159 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGA 159 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHH
Confidence 99997767899999999999999976310 1345566666653 6889999999999999999999999996
Q ss_pred hcccCccc
Q psy7798 253 IKRRDFEK 260 (261)
Q Consensus 253 ~~~a~L~~ 260 (261)
+.+++++
T Consensus 160 -~~~~~~~ 166 (351)
T cd08285 160 -ELANIKL 166 (351)
T ss_pred -HccCCCC
Confidence 6777764
No 39
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.87 E-value=4e-21 Score=172.43 Aligned_cols=158 Identities=22% Similarity=0.381 Sum_probs=136.9
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
||++++.+++.++++++.+.|.+.+++|+|++.++++|+.|+....|.++...+|.++|+|++|+|+.+|+++++|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 68899988887899999999999999999999999999999999998766445578999999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc----ccceeeeeeeecc---cccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT----TQLFLTSNVTISD---FNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~---~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
+|++.....|++|.+|..+..+.|..... ..+.++.++.++. ...++|++++++++++++..++|||++|.+.
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~ 160 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQ 160 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHc
Confidence 99886667899999999999999987531 1355666666653 7889999999999999999999999999877
Q ss_pred cCccc
Q psy7798 256 RDFEK 260 (261)
Q Consensus 256 a~L~~ 260 (261)
+++++
T Consensus 161 ~~~~~ 165 (345)
T cd08260 161 ARVKP 165 (345)
T ss_pred cCCCC
Confidence 77654
No 40
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.87 E-value=2.9e-21 Score=172.83 Aligned_cols=157 Identities=29% Similarity=0.432 Sum_probs=132.8
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC---CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE---GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~---~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++..+++++.+.+.+.|.+.+++|+|+|.++|+|+.|++...|.++. ..+|.++|+|++|+|+++|++|.+|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 578888888777999999999999999999999999999999999887642 34568899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccc----cceeeee-eeecccccccCCCCChhhhccccchHHHHHHHHhc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT----QLFLTSN-VTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIK 254 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~-~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~ 254 (261)
+||+|+++....|+.|..|..+..+.|...... .|.++++ .+......++|++++++++++++..++|||++|..
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~ 160 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKK 160 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHH
Confidence 999999988888999999999999888654322 2444454 44457888999999999999999999999999976
Q ss_pred c-cCcc
Q psy7798 255 R-RDFE 259 (261)
Q Consensus 255 ~-a~L~ 259 (261)
. .+++
T Consensus 161 ~~~~~~ 166 (340)
T cd05284 161 ALPYLD 166 (340)
T ss_pred hcccCC
Confidence 5 3443
No 41
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.86 E-value=4.1e-21 Score=172.90 Aligned_cols=155 Identities=26% Similarity=0.387 Sum_probs=130.6
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC---------CCCCCcccccceEEEEEEeCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS---------EGKFPCVLGHEGSGIVESVGE 173 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~---------~~~~p~~lG~E~~G~V~~vG~ 173 (261)
||++++.+++. +++++.+.|+++++||+|++.++|+|+.|++...|... ....|.++|+|++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 67888887765 89999999999999999999999999999999888531 013567899999999999999
Q ss_pred CCC--CCCCCCEEEEeeccCCCCCcccccCcccccccccc------ccceeeeeeeec-c-cccccCCCCChhhhccccc
Q psy7798 174 GVT--SVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT------TQLFLTSNVTIS-D-FNMGYSMTGSLERGSKRDN 243 (261)
Q Consensus 174 ~v~--~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~-~-~~~~~~~~~s~~eaA~lp~ 243 (261)
+|+ +|++||+|++.+..+|+.|.+|..+..+.|..... ..|++++++.++ + .+.++|+++++++++.+ .
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~ 158 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI-E 158 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhh-h
Confidence 999 99999999998889999999999999999976431 234556666655 4 45799999999999998 8
Q ss_pred hHHHHHHHHhcccCccc
Q psy7798 244 SFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 244 ~~~TA~~aL~~~a~L~~ 260 (261)
.++|||+++ +.+++++
T Consensus 159 ~~~ta~~a~-~~~~~~~ 174 (350)
T cd08256 159 PLACALHAV-DRANIKF 174 (350)
T ss_pred HHHHHHHHH-HhcCCCC
Confidence 999999998 7777653
No 42
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.86 E-value=5.7e-21 Score=171.86 Aligned_cols=157 Identities=31% Similarity=0.343 Sum_probs=132.6
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC------------CCCCCcccccceEEEEEE
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS------------EGKFPCVLGHEGSGIVES 170 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~------------~~~~p~~lG~E~~G~V~~ 170 (261)
||++++..++.++++.+.+.|+++++||+|+|.++|+|++|++...|.++ ....|.++|+|++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 67888877887799999999999999999999999999999999988654 123457899999999999
Q ss_pred eCCCCCCCCCCCEEEEeeccCCCCCcccccCcccccccccc----ccceeeeeeee-cccccccCCCCChhhhccccchH
Q psy7798 171 VGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT----TQLFLTSNVTI-SDFNMGYSMTGSLERGSKRDNSF 245 (261)
Q Consensus 171 vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~-~~~~~~~~~~~s~~eaA~lp~~~ 245 (261)
+|++++++++||+|++++...|+.|..|..+..+.|..... ..+.++.++.+ ......+|+++++.+++++++.+
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~ 160 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSG 160 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhchh
Confidence 99999999999999998888999999999999999966422 22344444444 46778999999999999999999
Q ss_pred HHHHHHHhcccCcc
Q psy7798 246 QTTHFAVIKRRDFE 259 (261)
Q Consensus 246 ~TA~~aL~~~a~L~ 259 (261)
+|||+++...+.++
T Consensus 161 ~tA~~~~~~~~~~~ 174 (350)
T cd08240 161 LTAYSAVKKLMPLV 174 (350)
T ss_pred hhHHHHHHhcccCC
Confidence 99999998776653
No 43
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.86 E-value=6.7e-21 Score=171.37 Aligned_cols=153 Identities=22% Similarity=0.269 Sum_probs=122.7
Q ss_pred eeEEEEecCCCCcEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
||++++.+++. +++.+.+.|.| +++||+|||.++|+|++|++...+.. ....|.++|||++|+|+++|++|++|++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 67888887764 88999999987 69999999999999999997643211 12346899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
|||++.+...|+.|.+|..+..+.|..... .|++.++..+......++|+++++++||.+. .+.++|+++ +.+
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~-~~~ 156 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF-HLA 156 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-Hhc
Confidence 999998888999999999999999976432 2445555555557788999999999999874 456688875 455
Q ss_pred Ccc
Q psy7798 257 DFE 259 (261)
Q Consensus 257 ~L~ 259 (261)
+++
T Consensus 157 ~~~ 159 (347)
T PRK10309 157 QGC 159 (347)
T ss_pred CCC
Confidence 544
No 44
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.86 E-value=9.8e-21 Score=168.34 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=129.9
Q ss_pred eeEEEEecCC-CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPK-KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g-~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++.+++ ..+++.+.+.|+++++||+|++.++|+|++|++...+. +...+|.++|||++|+|+++|++|++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 5677776666 45888888888899999999999999999999988752 222346789999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccc-----cccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIR-----TTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
|+|++.....|+.|.+|..+..+.|.... ..+++.++.........++|+++++++++.++.+++|||+++.. +
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~ 158 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-A 158 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-c
Confidence 99999887799999999999999997531 12455556666667889999999999999999999999999854 7
Q ss_pred Cccc
Q psy7798 257 DFEK 260 (261)
Q Consensus 257 ~L~~ 260 (261)
++++
T Consensus 159 ~~~~ 162 (325)
T cd08264 159 GLGP 162 (325)
T ss_pred CCCC
Confidence 6653
No 45
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.86 E-value=4.1e-21 Score=172.71 Aligned_cols=145 Identities=19% Similarity=0.132 Sum_probs=111.2
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC----CCCCcccccceEEEEEEeCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE----GKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~----~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
.+++++.++++ +++++.+.|+ +++||+|||+++|||++|++.+.|.++. ..+|.++|||++|+|+++|.+ +|
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~ 78 (341)
T cd08237 3 NQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TY 78 (341)
T ss_pred ccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--cc
Confidence 46777877775 8899999885 9999999999999999999999987532 346899999999999998864 79
Q ss_pred CCCCEEEEeeccCCCCCcccccCcccccccccc----ccceeeee-eeecccccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT----TQLFLTSN-VTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~-~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
++||||+..+...|+.| .| +..+.|..... .+|++++| +++...++++|+++++++|| ++..++|||+++.
T Consensus 79 ~vGdrV~~~~~~~~~~~-~~--~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~ 154 (341)
T cd08237 79 KVGTKVVMVPNTPVEKD-EI--IPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAIS 154 (341)
T ss_pred CCCCEEEECCCCCchhc-cc--chhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHH
Confidence 99999998765556633 34 34456654321 12444555 45557889999999998876 5568999999986
Q ss_pred cc
Q psy7798 254 KR 255 (261)
Q Consensus 254 ~~ 255 (261)
..
T Consensus 155 ~~ 156 (341)
T cd08237 155 RF 156 (341)
T ss_pred HH
Confidence 43
No 46
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.86 E-value=9.2e-21 Score=169.79 Aligned_cols=154 Identities=23% Similarity=0.309 Sum_probs=129.8
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCC-CCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPK-AGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~-~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++..++ .+++++.+.|.|. ++||+|+|.++|+|+.|++...|.++ ...|.++|+|++|+|+++|++|+++++|
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence 5677776654 5899999999885 99999999999999999999988765 3346789999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccccc--------cceeeeeeeec---ccccccCCCCChhhhccccchHHHHHH
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRTT--------QLFLTSNVTIS---DFNMGYSMTGSLERGSKRDNSFQTTHF 250 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~---~~~~~~~~~~s~~eaA~lp~~~~TA~~ 250 (261)
|+|++.+...|+.|.+|..+....|...... .+.++.+..++ ....++|++++++++++++.+++|||+
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~ 158 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYF 158 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHh
Confidence 9999988788999999999999988654332 24556666655 388899999999999999999999999
Q ss_pred HHhcccCcc
Q psy7798 251 AVIKRRDFE 259 (261)
Q Consensus 251 aL~~~a~L~ 259 (261)
++.. ++++
T Consensus 159 ~~~~-~~~~ 166 (344)
T cd08284 159 GAKR-AQVR 166 (344)
T ss_pred hhHh-cCCc
Confidence 9954 6654
No 47
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.86 E-value=1.1e-20 Score=168.84 Aligned_cols=156 Identities=28% Similarity=0.420 Sum_probs=128.8
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
||++++.+++....+++.+.|+|+++||+|+|.++++|++|++...|.++. ..|.++|+|++|+|+++|+++++|++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 678888887765448899999999999999999999999999999887653 2357899999999999999999999999
Q ss_pred EEEEee-ccCCCCCcccccCccccccccccc----cceeeeeeee-cccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 183 HVIPLY-IPQCNECKFCKSSKTNLCTKIRTT----QLFLTSNVTI-SDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 183 rV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
+|++.+ ...|+.|.+|..+..+.|...... .|.+++++.+ .....++|++++++++++++..++|||+++ +.+
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~~~ 158 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVS 158 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-Hhc
Confidence 998754 367999999988888888654321 2444455444 467789999999999999999999999998 677
Q ss_pred Cccc
Q psy7798 257 DFEK 260 (261)
Q Consensus 257 ~L~~ 260 (261)
++++
T Consensus 159 ~~~~ 162 (338)
T PRK09422 159 GIKP 162 (338)
T ss_pred CCCC
Confidence 7653
No 48
>PRK10083 putative oxidoreductase; Provisional
Probab=99.86 E-value=1e-20 Score=169.35 Aligned_cols=155 Identities=27% Similarity=0.407 Sum_probs=128.5
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.+++ .+++.+.+.|.|+++||+||+.++|+|++|++...|.++...+|.++|||++|+|+++|++|+.|++||
T Consensus 1 m~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPN-SLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCC-eeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 5778888766 488999999999999999999999999999999988776545688999999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+|+..+...|+.|.+|..+..+.|..... .|++.++.........++|+++++++++ +...+.|||+ +.+.++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~-~~~~~~ 157 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAAN-VTGRTG 157 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHH-HHHhcC
Confidence 99988878899999999999999975421 1344444555557788999999998876 6678888885 556676
Q ss_pred ccc
Q psy7798 258 FEK 260 (261)
Q Consensus 258 L~~ 260 (261)
+++
T Consensus 158 ~~~ 160 (339)
T PRK10083 158 PTE 160 (339)
T ss_pred CCC
Confidence 654
No 49
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.85 E-value=1.3e-20 Score=169.05 Aligned_cols=157 Identities=25% Similarity=0.294 Sum_probs=132.5
Q ss_pred eeEEEEecCCCCcEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++.+++. +++.+.+.|+| .++||+|+|.++++|+.|+....|.++...+|.++|+|++|+|+++|++++++++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 57788877765 88999998886 89999999999999999999999987654557899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecc---cccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISD---FNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~---~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
|+|++.+...|+.|.+|..+....|..... .+|.+++++.++. ...++|+++++++++.++..++|||+++.
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~ 159 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGV 159 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHH
Confidence 999998877899999999888877765311 1356666666663 68899999999999999999999999887
Q ss_pred cccCccc
Q psy7798 254 KRRDFEK 260 (261)
Q Consensus 254 ~~a~L~~ 260 (261)
+.+++++
T Consensus 160 ~~~~~~~ 166 (345)
T cd08286 160 LNGKVKP 166 (345)
T ss_pred hhcCCCC
Confidence 7777654
No 50
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.85 E-value=1.7e-20 Score=168.12 Aligned_cols=151 Identities=26% Similarity=0.294 Sum_probs=127.6
Q ss_pred EEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEE
Q psy7798 105 AAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHV 184 (261)
Q Consensus 105 ~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV 184 (261)
++.....+..+++.+.+.|.|+++||+|||.++|+|+.|++...|.++...+|.++|||++|+|+++|+++++|++||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V 81 (337)
T cd05283 2 GYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRV 81 (337)
T ss_pred ceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCEE
Confidence 45666777779999999999999999999999999999999999877555567899999999999999999999999999
Q ss_pred E-EeeccCCCCCcccccCccccccccc------------cccceeeeeeeecccccccCCCCChhhhccccchHHHHHHH
Q psy7798 185 I-PLYIPQCNECKFCKSSKTNLCTKIR------------TTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFA 251 (261)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~a 251 (261)
+ +.....|++|.+|..+..+.|+... ..|++.++.........++|+++++++++.+++.+.|||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~ 161 (337)
T cd05283 82 GVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSP 161 (337)
T ss_pred EEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHH
Confidence 7 5455689999999999999997542 12344444444457788999999999999999999999999
Q ss_pred Hhcc
Q psy7798 252 VIKR 255 (261)
Q Consensus 252 L~~~ 255 (261)
+...
T Consensus 162 ~~~~ 165 (337)
T cd05283 162 LKRN 165 (337)
T ss_pred HHhc
Confidence 8554
No 51
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.85 E-value=2e-20 Score=170.21 Aligned_cols=155 Identities=23% Similarity=0.312 Sum_probs=130.7
Q ss_pred eeEEEEecCCCCcEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++.+++ ++++++++.|.+ +++||+|||.++|+|+.|++...|.++ ...|.++|||++|+|+++|++++.|++|
T Consensus 1 m~~~~~~~~~-~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPG-NVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCC-ceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 4677777765 589999999986 899999999999999999999998776 3457899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCcccccccccc--------------ccceeeeeeeecc---cccccCCCCChh---hhccc
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRT--------------TQLFLTSNVTISD---FNMGYSMTGSLE---RGSKR 241 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~---~~~~~~~~~s~~---eaA~l 241 (261)
|+|++.+...|+.|..|..+..+.|..... ..|.+++++.++. .+.++|++++++ +++.+
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~ 158 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLML 158 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhheeee
Confidence 999988888899999999999988865321 1255666666663 788999999999 57889
Q ss_pred cchHHHHHHHHhcccCccc
Q psy7798 242 DNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 242 p~~~~TA~~aL~~~a~L~~ 260 (261)
+..++|||+++ ..+++++
T Consensus 159 ~~~~~ta~~a~-~~~~~~~ 176 (375)
T cd08282 159 SDIFPTGWHGL-ELAGVQP 176 (375)
T ss_pred cchHHHHHHHH-HhcCCCC
Confidence 99999999998 7777654
No 52
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.85 E-value=2.3e-20 Score=165.86 Aligned_cols=157 Identities=24% Similarity=0.410 Sum_probs=131.2
Q ss_pred eeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++...+. .+.+.+.+.|.+.+++|+|++.++|+|+.|++...|.++. ...|.++|||++|+|+.+|+++++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 56777764442 3778888888889999999999999999999999886542 23467899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIK 254 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~ 254 (261)
+||+|++.+...|+.|.+|..+..+.|..... .+++.++..+......++|+++++++++.++.+++|||++|.+
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~ 160 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVT 160 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence 99999999888999999999999999987532 2344455555557788999999999999999999999999987
Q ss_pred ccCcc
Q psy7798 255 RRDFE 259 (261)
Q Consensus 255 ~a~L~ 259 (261)
.++++
T Consensus 161 ~~~~~ 165 (342)
T cd08266 161 RARLR 165 (342)
T ss_pred hcCCC
Confidence 77664
No 53
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.85 E-value=6.4e-21 Score=143.98 Aligned_cols=84 Identities=40% Similarity=0.742 Sum_probs=74.1
Q ss_pred CCeEEEEEEEEEcChhhHHHHcCC-CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCcccc
Q psy7798 127 AGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNL 205 (261)
Q Consensus 127 ~~eVlVkV~a~gln~~Dv~~~~g~-~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~ 205 (261)
|+||+|||+++|||++|++.+.|. .+....|.++|||++|+|+++|++|++|++||||++.+...|+.|..|..+..+.
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 689999999999999999999994 4446788999999999999999999999999999998877899999999999999
Q ss_pred ccccc
Q psy7798 206 CTKIR 210 (261)
Q Consensus 206 ~~~~~ 210 (261)
|....
T Consensus 81 c~~~~ 85 (109)
T PF08240_consen 81 CPNPE 85 (109)
T ss_dssp TTTBE
T ss_pred CCCCC
Confidence 97653
No 54
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.84 E-value=3.8e-20 Score=164.83 Aligned_cols=157 Identities=31% Similarity=0.426 Sum_probs=131.7
Q ss_pred eeEEEEecCCC----CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy7798 103 CKAAVAWEPKK----PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 103 ~~~~~~~~~g~----~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
|+++++.++++ ++++.+.+.|.++++||+||+.++|+|+.|++...|.++....|.++|+|++|+|+++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 56777877773 58888888888999999999999999999999999987655567899999999999999999999
Q ss_pred CCCCEEEEee-ccCCCCCcccccCccccccccccc-----cceeeeeeeecccccccCCCCChhhhccccchHHHHHHHH
Q psy7798 179 APGDHVIPLY-IPQCNECKFCKSSKTNLCTKIRTT-----QLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAV 252 (261)
Q Consensus 179 ~vGDrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL 252 (261)
++||+|++.+ ..+|+.|.+|..+..+.|+..... |++.++.........++|+++++.++++++..++|||+++
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~ 160 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL 160 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH
Confidence 9999998754 357889999999999999765321 3344444444577889999999999999999999999999
Q ss_pred hcccCccc
Q psy7798 253 IKRRDFEK 260 (261)
Q Consensus 253 ~~~a~L~~ 260 (261)
+.+++++
T Consensus 161 -~~~~~~~ 167 (329)
T cd08298 161 -KLAGLKP 167 (329)
T ss_pred -HhhCCCC
Confidence 8888764
No 55
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.84 E-value=3.4e-20 Score=169.59 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=129.7
Q ss_pred cceeeeEEEEe--cCCC---CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC----------CCCCCcccccc
Q psy7798 99 QVIECKAAVAW--EPKK---PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS----------EGKFPCVLGHE 163 (261)
Q Consensus 99 ~~~~~~~~~~~--~~g~---~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~----------~~~~p~~lG~E 163 (261)
.|.+|+++++. ..+. .+++.+.+.|.++++||+|+|.++|+|++|++...|... ....+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 34568888774 2332 378889999999999999999999999999998877511 01122588999
Q ss_pred eEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCccccccccccc------cceeeeeeeecccccccCCCCChhh
Q psy7798 164 GSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT------QLFLTSNVTISDFNMGYSMTGSLER 237 (261)
Q Consensus 164 ~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~s~~e 237 (261)
++|+|+++|++|+.|++||+|++++...|+.|..|..+..+.|...... |++.++..+......++|+++++++
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~ 168 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEE 168 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHH
Confidence 9999999999999999999999988788999999999999999743222 4444555555578889999999999
Q ss_pred hccccchHHHHHHHHhcc--cCccc
Q psy7798 238 GSKRDNSFQTTHFAVIKR--RDFEK 260 (261)
Q Consensus 238 aA~lp~~~~TA~~aL~~~--a~L~~ 260 (261)
++.++.+++|||++|... +++++
T Consensus 169 aa~l~~~~~tA~~al~~~~~~~~~~ 193 (393)
T cd08246 169 AAAYMLVGATAYRMLFGWNPNTVKP 193 (393)
T ss_pred HhhhcccHHHHHHHHhhcccccCCC
Confidence 999999999999999755 56553
No 56
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.83 E-value=8.1e-20 Score=162.82 Aligned_cols=158 Identities=28% Similarity=0.401 Sum_probs=132.0
Q ss_pred eeEEEEecCCCC-cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC-CCCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKP-LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS-EGKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 103 ~~~~~~~~~g~~-l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~-~~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
|+++.+..++++ +.+.+.+.|.+++++|+|+|.++++|+.|+....|.++ ....|.++|+|++|+|+.+|+++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 678888888877 67778888889999999999999999999999998775 2344678999999999999999999999
Q ss_pred CCEEEEeeccCCCCCcccccCccccccccc----cccceeeee-eeecccccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIR----TTQLFLTSN-VTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~-~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
||+|++.+..+|+.|..|..+....|.... ..++.++.+ ........++|++++++++++++..++|||++|.+.
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~ 160 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRA 160 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhc
Confidence 999999888899999999999888874221 112444444 444477889999999999999999999999999887
Q ss_pred cCccc
Q psy7798 256 RDFEK 260 (261)
Q Consensus 256 a~L~~ 260 (261)
+++++
T Consensus 161 ~~~~~ 165 (338)
T cd08254 161 GEVKP 165 (338)
T ss_pred cCCCC
Confidence 77653
No 57
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.83 E-value=7.9e-20 Score=167.63 Aligned_cols=160 Identities=17% Similarity=0.142 Sum_probs=129.4
Q ss_pred ceeeeEEEEec--CCC---CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC----------CCCCC-cccccc
Q psy7798 100 VIECKAAVAWE--PKK---PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS----------EGKFP-CVLGHE 163 (261)
Q Consensus 100 ~~~~~~~~~~~--~g~---~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~----------~~~~p-~~lG~E 163 (261)
+.+|+++++.. .++ .+++.+.+.|.|+++||+|++.++|+|+.|++...|... ....| .++|||
T Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e 84 (398)
T TIGR01751 5 PETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSD 84 (398)
T ss_pred chhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccc
Confidence 45689998854 453 388999999999999999999999999999988766421 00123 379999
Q ss_pred eEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCccccccccccc-----cceeeee-eeecccccccCCCCChhh
Q psy7798 164 GSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT-----QLFLTSN-VTISDFNMGYSMTGSLER 237 (261)
Q Consensus 164 ~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~-~~~~~~~~~~~~~~s~~e 237 (261)
++|+|+++|++++.|++||+|++.+...|++|.+|..+....|...... .|.++++ .+......++|+++++++
T Consensus 85 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~ 164 (398)
T TIGR01751 85 ASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEE 164 (398)
T ss_pred eEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHH
Confidence 9999999999999999999999998889999999999999988654322 2444444 444477889999999999
Q ss_pred hccccchHHHHHHHHhc--ccCcc
Q psy7798 238 GSKRDNSFQTTHFAVIK--RRDFE 259 (261)
Q Consensus 238 aA~lp~~~~TA~~aL~~--~a~L~ 259 (261)
++.++.+++|||++|.. .++++
T Consensus 165 aa~~~~~~~ta~~al~~~~~~~~~ 188 (398)
T TIGR01751 165 AACPGLTGATAYRQLVGWNPATVK 188 (398)
T ss_pred HhhccchHHHHHHHHhhhhccCCC
Confidence 99999999999999865 45554
No 58
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.83 E-value=1.5e-19 Score=161.69 Aligned_cols=154 Identities=29% Similarity=0.436 Sum_probs=127.1
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++.+..++ .+++.+.+.|.++++||+|+|.++++|+.|+....|.++...+|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPG-RLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCC-ceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 5677777665 488899999999999999999999999999999988776545578899999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccc-----ccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKI-----RTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+|++.+..+|+.|..|..+..+.|... ...|.+.++..+... ..++|+++++++++++ ..++||+++| +.++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~ 156 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAG 156 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcC
Confidence 999887778999999999999888432 112344444444446 8899999999999987 6789999988 7777
Q ss_pred ccc
Q psy7798 258 FEK 260 (261)
Q Consensus 258 L~~ 260 (261)
+++
T Consensus 157 l~~ 159 (337)
T cd08261 157 VTA 159 (337)
T ss_pred CCC
Confidence 754
No 59
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.83 E-value=7.3e-20 Score=163.37 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=112.1
Q ss_pred EEEEecC---CC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 105 AAVAWEP---KK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 105 ~~~~~~~---g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
++++..+ ++ .++..+.|.|+|+++||+|||+++++|+.|++...|..+...+|.++|+|++|+|+++|++|+.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (336)
T TIGR02817 2 AVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLFK 81 (336)
T ss_pred ceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCCC
Confidence 4556554 43 377888899999999999999999999999999888765455678999999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|+++.. ....|++.++..+....+.++|++++++++|++|++++|||++|...++++
T Consensus 82 ~Gd~V~~~~~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~ 142 (336)
T TIGR02817 82 PGDEVWYAGD-------------------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGIN 142 (336)
T ss_pred CCCEEEEcCC-------------------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 9999987531 001144555555555788899999999999999999999999998888876
Q ss_pred c
Q psy7798 260 K 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 143 ~ 143 (336)
T TIGR02817 143 D 143 (336)
T ss_pred C
Confidence 3
No 60
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.83 E-value=1.8e-19 Score=159.55 Aligned_cols=157 Identities=27% Similarity=0.388 Sum_probs=129.4
Q ss_pred eeEEEEecCC-CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPK-KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g-~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|++++..+.+ ..+++++++.|.++++||+|+|.++++|+.|++...|.+.....|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 4677776655 358999999999999999999999999999999998876433456789999999999999999999999
Q ss_pred CEEEEeec-cCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 182 DHVIPLYI-PQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 182 DrV~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
|+|+++.. ..|+.|.+|..+....|+.... .+++.++..+....++++|+++++++++ ++..++|||++|...
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~ 159 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAER 159 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHh
Confidence 99998764 6789999999998888875421 1344444455557889999999999887 889999999999888
Q ss_pred cCccc
Q psy7798 256 RDFEK 260 (261)
Q Consensus 256 a~L~~ 260 (261)
+++++
T Consensus 160 ~~~~~ 164 (306)
T cd08258 160 SGIRP 164 (306)
T ss_pred cCCCC
Confidence 87753
No 61
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.82 E-value=8.3e-20 Score=168.21 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=104.7
Q ss_pred eeeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHH-cCCCCC------CCCCcccccceEEEEEEeCC
Q psy7798 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTL-DGLDSE------GKFPCVLGHEGSGIVESVGE 173 (261)
Q Consensus 101 ~~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~-~g~~~~------~~~p~~lG~E~~G~V~~vG~ 173 (261)
|.|+++++.+++. +++.++|.|.|+++||+|||.++|||++|++.. .|.... ..+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 4688898888875 999999999999999999999999999999976 454211 13678999999999999999
Q ss_pred CCC-CCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecc-----cccccCCCCChhhhccc
Q psy7798 174 GVT-SVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISD-----FNMGYSMTGSLERGSKR 241 (261)
Q Consensus 174 ~v~-~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~s~~eaA~l 241 (261)
+|+ +|++||||++.+...|+.|..|.. .+ .. ..|.+++++.++. .+.++|+++++++|+.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~----~g--~~-~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~ 146 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCPG----YS--YT-YPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLV 146 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCCC----cc--cc-CCCcceEEEEecHHhccCCeEECCCCCCHHHHhhc
Confidence 998 699999999887667888877631 11 11 1345556655554 36899999999999865
No 62
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.82 E-value=2.1e-19 Score=160.15 Aligned_cols=155 Identities=30% Similarity=0.391 Sum_probs=129.5
Q ss_pred eEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCE
Q psy7798 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDH 183 (261)
Q Consensus 104 ~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDr 183 (261)
|++++.+.|+.+++.+.+.|.+.+++|+|++.++++|+.|++...|.++...+|.++|+|++|+|+++|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 46777888777999999999999999999999999999999999887654456788999999999999999999999999
Q ss_pred EEEeec-cCCCCCcccccCcccccccc---cc--ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 184 VIPLYI-PQCNECKFCKSSKTNLCTKI---RT--TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 184 V~~~~~-~~~~~~~~~~~~~~~~~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
|+..+. ..|+.|.+|..+..+.|++. .. .+++.++..+......++|++++++++++++..++|||++|.. ++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~ 159 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AG 159 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hC
Confidence 986543 57999999999999988864 11 2334444455557788999999999999999999999999854 55
Q ss_pred cc
Q psy7798 258 FE 259 (261)
Q Consensus 258 L~ 259 (261)
++
T Consensus 160 ~~ 161 (330)
T cd08245 160 PR 161 (330)
T ss_pred CC
Confidence 54
No 63
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.81 E-value=3.6e-19 Score=159.52 Aligned_cols=154 Identities=29% Similarity=0.376 Sum_probs=127.9
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.+.+. +.+.+.+.|+++++||+|++.++++|+.|++...|.++ ...|.++|+|++|+|+.+|+++++|++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 57888887754 88889999999999999999999999999999888653 23467899999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCccccccccc-----cccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIR-----TTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+|++++...|+.|.+|..+....|.... ..+.+.++..+......++|++++++++|++ ..++|||++|. .++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~ 156 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-LAG 156 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-hcC
Confidence 9999887788999999999888886653 2234444455555778899999999999988 57899999995 666
Q ss_pred ccc
Q psy7798 258 FEK 260 (261)
Q Consensus 258 L~~ 260 (261)
+++
T Consensus 157 ~~~ 159 (343)
T cd08236 157 ITL 159 (343)
T ss_pred CCC
Confidence 653
No 64
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.81 E-value=4.4e-19 Score=158.83 Aligned_cols=155 Identities=28% Similarity=0.420 Sum_probs=127.9
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.+++ .+.+.+.+.|++.+++|+|+|.++++|+.|+....|.++....|.++|+|++|+|+++|++|+.|++||
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPN-DVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCC-ceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 5778887776 488999999999999999999999999999999988764333467899999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc----ccceeeeeeeec-cc-----ccccCCCCChhhhccccchHHHHHHHH
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT----TQLFLTSNVTIS-DF-----NMGYSMTGSLERGSKRDNSFQTTHFAV 252 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~-~~-----~~~~~~~~s~~eaA~lp~~~~TA~~aL 252 (261)
+|++++...|+.|.+|..+....|..... ..+.++.++.++ .. ..++|+++++++|+.+ ..+.|||++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l 158 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCINAQ 158 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHHHHH
Confidence 99998888899999999888888876532 234555555555 55 8899999999999876 8899999999
Q ss_pred hcccCccc
Q psy7798 253 IKRRDFEK 260 (261)
Q Consensus 253 ~~~a~L~~ 260 (261)
.. .++++
T Consensus 159 ~~-~~~~~ 165 (343)
T cd08235 159 RK-AGIKP 165 (343)
T ss_pred Hh-cCCCC
Confidence 54 46653
No 65
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.81 E-value=3.1e-19 Score=158.31 Aligned_cols=135 Identities=22% Similarity=0.258 Sum_probs=113.0
Q ss_pred eeEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC-CCCCCcccccceEEEEEEeCCCCCCC
Q psy7798 103 CKAAVAWEPKKP---LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS-EGKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 103 ~~~~~~~~~g~~---l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~-~~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
|+++++.+++.+ +++.+.+.|.++++||+|+|.++|+|+.|++...|.++ ....|.++|||++|+|+++|++|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 578888777653 78899999999999999999999999999999988765 23457899999999999999999999
Q ss_pred CCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCc
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDF 258 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L 258 (261)
++||+|+++.. .|++.++.........++|+++++++++++++.++|||+++ ..+++
T Consensus 81 ~~Gd~V~~~~~----------------------~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~ 137 (324)
T cd08292 81 QVGQRVAVAPV----------------------HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGV 137 (324)
T ss_pred CCCCEEEeccC----------------------CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCC
Confidence 99999988641 14455555555577889999999999999999999999998 44666
Q ss_pred cc
Q psy7798 259 EK 260 (261)
Q Consensus 259 ~~ 260 (261)
++
T Consensus 138 ~~ 139 (324)
T cd08292 138 KP 139 (324)
T ss_pred CC
Confidence 53
No 66
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.81 E-value=3.3e-19 Score=158.23 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=105.1
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcC-hhhHHHHcCCCCC---CCCCcccccceEEEEEEeCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAIC-HTDAYTLDGLDSE---GKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln-~~Dv~~~~g~~~~---~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
++++++.+++. +++.+.+.|.|+++||+|||+++||| .+|++...|.++. ..+|.++|||++|+|+++|+++ +|
T Consensus 2 ~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~ 79 (308)
T TIGR01202 2 TQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GF 79 (308)
T ss_pred ceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CC
Confidence 67888877664 89999999999999999999999997 6999999887653 2468999999999999999998 69
Q ss_pred CCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhc
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIK 254 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~ 254 (261)
++||||+... ..|..|..+ ..|++.++.+++.+...++|++++++. +.++ .+.|||+++..
T Consensus 80 ~vGdrV~~~~----~~c~~~~~~---------~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~ 140 (308)
T TIGR01202 80 RPGDRVFVPG----SNCYEDVRG---------LFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG 140 (308)
T ss_pred CCCCEEEEeC----ccccccccc---------cCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh
Confidence 9999998732 234332211 125565566666678889999999865 5555 46899999954
No 67
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.81 E-value=3.9e-19 Score=159.04 Aligned_cols=149 Identities=30% Similarity=0.459 Sum_probs=120.6
Q ss_pred EecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHc-CCCCC--CCCCcccccceEEEEEEeCCCCCCCCCCCEE
Q psy7798 108 AWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLD-GLDSE--GKFPCVLGHEGSGIVESVGEGVTSVAPGDHV 184 (261)
Q Consensus 108 ~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~-g~~~~--~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV 184 (261)
+++.+ .+++.+.+.|.++++||+|||.++|+|+.|++... |.++. ..+|.++|+|++|+|+++|++|++|++||+|
T Consensus 3 ~~~~~-~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V 81 (339)
T cd08232 3 IHAAG-DLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRV 81 (339)
T ss_pred eccCC-ceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEE
Confidence 34444 38899999999999999999999999999998763 43321 2346789999999999999999999999999
Q ss_pred EEeeccCCCCCcccccCcccccccccc----------ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhc
Q psy7798 185 IPLYIPQCNECKFCKSSKTNLCTKIRT----------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIK 254 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~ 254 (261)
++.+...|+.|.+|..+..+.|..... .|++.++..+......++|+++++++|+. +..++|||++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~ 160 (339)
T cd08232 82 AVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNR 160 (339)
T ss_pred EEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHh
Confidence 998888999999999999999976421 23344444555577889999999999875 6899999999976
Q ss_pred ccCc
Q psy7798 255 RRDF 258 (261)
Q Consensus 255 ~a~L 258 (261)
.+.+
T Consensus 161 ~~~~ 164 (339)
T cd08232 161 AGDL 164 (339)
T ss_pred cCCC
Confidence 6554
No 68
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.81 E-value=4.8e-19 Score=158.82 Aligned_cols=155 Identities=25% Similarity=0.358 Sum_probs=123.5
Q ss_pred eeEEEEecCCCCcEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++++++. +.+.+.+.|.| +++||+||+.++|+|++|++...|.++. ..|.++|||++|+|+++|++|+++++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence 57888877664 88999999986 8999999999999999999998887653 346899999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccccc----cceeeeeeeecc---cccccCCCCChhhhc-----cccchHHHHH
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRTT----QLFLTSNVTISD---FNMGYSMTGSLERGS-----KRDNSFQTTH 249 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~~~~s~~eaA-----~lp~~~~TA~ 249 (261)
|+|++.....|+.|.+|..+..+.|...... +|++++++.++. .+.++|++++++++. ++...++|||
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~ 158 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGH 158 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHH
Confidence 9998855567999999999988888754332 255566666653 789999999882211 2336789999
Q ss_pred HHHhcccCccc
Q psy7798 250 FAVIKRRDFEK 260 (261)
Q Consensus 250 ~aL~~~a~L~~ 260 (261)
+++ ..+++++
T Consensus 159 ~~~-~~~~~~~ 168 (345)
T cd08287 159 HAA-VSAGVRP 168 (345)
T ss_pred HHH-HhcCCCC
Confidence 998 4666653
No 69
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.81 E-value=2.8e-19 Score=159.36 Aligned_cols=134 Identities=27% Similarity=0.221 Sum_probs=109.7
Q ss_pred eeEEEEecCCCC-----cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCC
Q psy7798 103 CKAAVAWEPKKP-----LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVT 176 (261)
Q Consensus 103 ~~~~~~~~~g~~-----l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~ 176 (261)
|+++++.+++++ +++.+.+.|.|+++||+|+|.++|+|+.|++...|.++. ..+|.++|||++|+|+++|++|+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 578888887753 777888899999999999999999999999999887653 34678999999999999999999
Q ss_pred C-CCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 177 S-VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 177 ~-~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
+ |++||+|+++.. . .|++.++..+......++|++++++++|++++.++|||.+ .+.
T Consensus 81 ~~~~vGd~V~~~~~------------------~---~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~-~~~ 138 (324)
T cd08291 81 AQSLIGKRVAFLAG------------------S---YGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGM-LET 138 (324)
T ss_pred ccCCCCCEEEecCC------------------C---CCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHH-HHh
Confidence 6 999999987531 0 1445555555557788999999999999999999999754 455
Q ss_pred cCc
Q psy7798 256 RDF 258 (261)
Q Consensus 256 a~L 258 (261)
+++
T Consensus 139 ~~~ 141 (324)
T cd08291 139 ARE 141 (324)
T ss_pred hcc
Confidence 543
No 70
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.81 E-value=4.9e-19 Score=158.56 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=119.0
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC-----------CCCCCcccccceEEEEEEe
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS-----------EGKFPCVLGHEGSGIVESV 171 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~-----------~~~~p~~lG~E~~G~V~~v 171 (261)
|+++++.++ .+++++.+.|+|+++||+|+|.++|+|+.|++...|..+ ....|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 577887665 688999999999999999999999999999999887321 1234678999999999999
Q ss_pred CCCCCC-CCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHH
Q psy7798 172 GEGVTS-VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHF 250 (261)
Q Consensus 172 G~~v~~-~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~ 250 (261)
|++|++ |++||+|++++...|+.|..|..+... ...|++.++..+....+.++|+++++++++ ++..++|||+
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~ 152 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP-----EAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLH 152 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc-----CCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHH
Confidence 999997 999999999988889999998543211 122444444455557788999999999887 7889999999
Q ss_pred HHhcccCccc
Q psy7798 251 AVIKRRDFEK 260 (261)
Q Consensus 251 aL~~~a~L~~ 260 (261)
++ ..+++++
T Consensus 153 ~~-~~~~~~~ 161 (341)
T cd08262 153 AV-RRARLTP 161 (341)
T ss_pred HH-HhcCCCC
Confidence 95 7777764
No 71
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.80 E-value=1.1e-18 Score=156.39 Aligned_cols=156 Identities=28% Similarity=0.440 Sum_probs=128.5
Q ss_pred eeEEEEecCC-CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 103 CKAAVAWEPK-KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 103 ~~~~~~~~~g-~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
|+++++.+++ ..+++.+.+.|.|+++||+|++.++++|++|+....|.++. ...|..+|+|++|+|+++|++++.|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 6788887776 45899999999999999999999999999999999887653 234568899999999999999999999
Q ss_pred CCEEEEee-ccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhc
Q psy7798 181 GDHVIPLY-IPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIK 254 (261)
Q Consensus 181 GDrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~ 254 (261)
||+|++.+ ...|+.|.+|..+....|..... .+++.++.......+.++|++++++++++++..++|||+++..
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~ 160 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKK 160 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHh
Confidence 99999875 36789999999998888865322 2334444455557788999999999999999999999999865
Q ss_pred ccCcc
Q psy7798 255 RRDFE 259 (261)
Q Consensus 255 ~a~L~ 259 (261)
. +++
T Consensus 161 ~-~~~ 164 (341)
T cd08297 161 A-GLK 164 (341)
T ss_pred c-CCC
Confidence 3 554
No 72
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.80 E-value=9e-19 Score=158.62 Aligned_cols=155 Identities=26% Similarity=0.418 Sum_probs=120.8
Q ss_pred eeeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC---CCCCCcccccceEEEEEEeCCCCCCC
Q psy7798 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS---EGKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 102 ~~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~---~~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
+++++++.++. .+++.+.+.|.|+++||+|||.++|+|++|++...|... ....|.++|+|++|+|+++|+++++|
T Consensus 17 ~~~~~~~~~~~-~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 95 (364)
T PLN02702 17 ENMAAWLVGVN-TLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL 95 (364)
T ss_pred ccceEEEecCC-ceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence 45555555553 488888888889999999999999999999999876321 12246789999999999999999999
Q ss_pred CCCCEEEEeeccCCCCCcccccCcccccccccc------ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHH
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAV 252 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL 252 (261)
++||+|++.+..+|+.|..|..+..+.|+.... .|++.++..+....+.++|+++++++++.. ..+.+||+++
T Consensus 96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~ 174 (364)
T PLN02702 96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC 174 (364)
T ss_pred CCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH
Confidence 999999998888999999999999999975321 234444444444678899999999999862 3455688887
Q ss_pred hcccCcc
Q psy7798 253 IKRRDFE 259 (261)
Q Consensus 253 ~~~a~L~ 259 (261)
..++++
T Consensus 175 -~~~~~~ 180 (364)
T PLN02702 175 -RRANIG 180 (364)
T ss_pred -HhcCCC
Confidence 566654
No 73
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.80 E-value=6e-19 Score=158.39 Aligned_cols=152 Identities=32% Similarity=0.456 Sum_probs=122.8
Q ss_pred EEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcC-CCCC--CCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 106 AVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDG-LDSE--GKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 106 ~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g-~~~~--~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
+.+.+++ .+.+++.+.|.|.++||+|+|.++++|+.|++...+ ..+. ...|.++|+|++|+|+++|+++++|++||
T Consensus 2 ~~~~~~~-~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 80 (343)
T cd05285 2 AVLHGPG-DLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGD 80 (343)
T ss_pred ceEecCC-ceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCC
Confidence 3455663 488999999999999999999999999999987642 2211 13466889999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc------ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
+|++.+..+|++|.+|..+....|+.... .|++.++..+......++|+++++++++.+ ..+.|||+++ +.+
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~ 158 (343)
T cd05285 81 RVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRA 158 (343)
T ss_pred EEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-Hhc
Confidence 99988888999999999999999986422 234444444445778899999999999877 5889999997 777
Q ss_pred Cccc
Q psy7798 257 DFEK 260 (261)
Q Consensus 257 ~L~~ 260 (261)
++++
T Consensus 159 ~~~~ 162 (343)
T cd05285 159 GVRP 162 (343)
T ss_pred CCCC
Confidence 7764
No 74
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.80 E-value=9.3e-19 Score=156.10 Aligned_cols=154 Identities=27% Similarity=0.362 Sum_probs=128.3
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.+++ .+++.+.+.|+++++||+|+|.++++|+.|+....|.++. .+|.++|+|++|+|+++|++|++|++||
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPG-ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCC-ceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 5778887776 4888899999999999999999999999999999887763 3677999999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCccccccccccc-----cceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRTT-----QLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+|++.....|++|.+|..+..+.|...... |.+.++.......+..+|+++++.+++.+ ..++||+++| +.++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~ 156 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLG 156 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcC
Confidence 999887778999999988888877653222 33444445555788999999999999876 7889999998 7777
Q ss_pred ccc
Q psy7798 258 FEK 260 (261)
Q Consensus 258 L~~ 260 (261)
+++
T Consensus 157 ~~~ 159 (334)
T cd08234 157 IKP 159 (334)
T ss_pred CCC
Confidence 754
No 75
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.80 E-value=7.9e-19 Score=157.40 Aligned_cols=150 Identities=25% Similarity=0.275 Sum_probs=122.8
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCC-C--CCCCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-D--SEGKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~-~--~~~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
||++++.++++.+++.+.+.|.|+++||+|++.++++|++|+.+..|. + +....|.++|+|++|+|+++|++|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 578888888877999999999999999999999999999999977653 1 1223567899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCcccccccccc----ccceeeee-eeecccccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT----TQLFLTSN-VTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~-~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
+||+|++.+...|+.|..|..+..+.|+.... ..|+++++ .+......++|+++++++++. ...+.++++++.
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~-~~~~~~~~~~~~ 158 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAI-FDPFGNAVHTAL 158 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHh-hhHHHHHHHHHH
Confidence 99999998888999999999999999976421 12444444 444477889999999998884 467788877764
No 76
>KOG0025|consensus
Probab=99.79 E-value=7.4e-19 Score=149.55 Aligned_cols=138 Identities=24% Similarity=0.282 Sum_probs=118.6
Q ss_pred eeeeEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCC
Q psy7798 101 IECKAAVAWEPKKP---LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVT 176 (261)
Q Consensus 101 ~~~~~~~~~~~g~~---l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~ 176 (261)
...+++++...|+| +++.+++.|.....+|+||..|+-||++|+..+.|.||. +.+|.+-|.|++|.|+.||++|+
T Consensus 18 ~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vk 97 (354)
T KOG0025|consen 18 ARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVK 97 (354)
T ss_pred cccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcC
Confidence 45688999988877 778888888887778999999999999999999999986 56799999999999999999999
Q ss_pred CCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeec-ccccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 177 SVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTIS-DFNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 177 ~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
+|++||+|+-...+ -|+++.+.+.. +..+++++.++++.||++.++-+|||.+|.+.
T Consensus 98 gfk~Gd~VIp~~a~----------------------lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~df 155 (354)
T KOG0025|consen 98 GFKPGDWVIPLSAN----------------------LGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDF 155 (354)
T ss_pred ccCCCCeEeecCCC----------------------CccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHH
Confidence 99999999876531 45566665555 55677777799999999999999999999988
Q ss_pred cCccc
Q psy7798 256 RDFEK 260 (261)
Q Consensus 256 a~L~~ 260 (261)
-+|++
T Consensus 156 v~L~~ 160 (354)
T KOG0025|consen 156 VQLNK 160 (354)
T ss_pred HhcCC
Confidence 88765
No 77
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.79 E-value=2e-18 Score=154.93 Aligned_cols=154 Identities=20% Similarity=0.150 Sum_probs=116.3
Q ss_pred eeEEEEecCCC--CcEEEE-eeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC--------------------CCCCCcc
Q psy7798 103 CKAAVAWEPKK--PLSLET-IQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS--------------------EGKFPCV 159 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~-~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~--------------------~~~~p~~ 159 (261)
|+++.+..++. .+.+.+ .+.|.|.+++|+|||.++|+|++|+++..|.++ ....|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 46677766553 356654 467778999999999999999999999888653 1335788
Q ss_pred cccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhc
Q psy7798 160 LGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGS 239 (261)
Q Consensus 160 lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA 239 (261)
+|||++|+|+++|+++++|++||||++.+...|+.|..|.... +......|++.++.........++|+++++++++
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a 157 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADID---YIGSERDGGFAEYTVVPAENAYPVNSPLSDVELA 157 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccccc---ccCCCCCccceEEEEecHHHceeCCCCCCHHHHH
Confidence 9999999999999999999999999987766776665542110 0111112445555555557788999999999999
Q ss_pred cccchHHHHHHHHhcccCccc
Q psy7798 240 KRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 240 ~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+++.+++|||+++ ..+++++
T Consensus 158 ~l~~~~~ta~~~~-~~~~~~~ 177 (350)
T cd08274 158 TFPCSYSTAENML-ERAGVGA 177 (350)
T ss_pred hcccHHHHHHHHH-hhcCCCC
Confidence 9999999999998 6677653
No 78
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.79 E-value=1.2e-18 Score=155.83 Aligned_cols=137 Identities=29% Similarity=0.337 Sum_probs=114.9
Q ss_pred eeEEEEecCCCC---cEEEEeeCCCCCC-CeEEEEEEEEEcChhhHHHHcCCCCCC-C----CCcccccceEEEEEEeCC
Q psy7798 103 CKAAVAWEPKKP---LSLETIQVAPPKA-GEVRIKIVSTAICHTDAYTLDGLDSEG-K----FPCVLGHEGSGIVESVGE 173 (261)
Q Consensus 103 ~~~~~~~~~g~~---l~~~~~~~p~~~~-~eVlVkV~a~gln~~Dv~~~~g~~~~~-~----~p~~lG~E~~G~V~~vG~ 173 (261)
|+++.+.+++.+ +.+.+.+.|.|.+ ++|+|++.++|+|+.|++...|.++.. . .|.++|+|++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 688888888765 8999999998887 999999999999999999998876532 2 567899999999999999
Q ss_pred CCCCCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 174 GVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 174 ~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
++..|++||+|+++.. ..|++.++.........++|++++++++++++..++|||++|.
T Consensus 81 ~v~~~~~Gd~V~~~~~---------------------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~ 139 (341)
T cd08290 81 GVKSLKPGDWVIPLRP---------------------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLE 139 (341)
T ss_pred CCCCCCCCCEEEecCC---------------------CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHH
Confidence 9999999999997642 0144555555555788899999999999999999999999998
Q ss_pred cccCccc
Q psy7798 254 KRRDFEK 260 (261)
Q Consensus 254 ~~a~L~~ 260 (261)
+.+++++
T Consensus 140 ~~~~~~~ 146 (341)
T cd08290 140 DFVKLQP 146 (341)
T ss_pred hhcccCC
Confidence 7777654
No 79
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.78 E-value=3.2e-18 Score=156.27 Aligned_cols=146 Identities=23% Similarity=0.398 Sum_probs=117.5
Q ss_pred CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCC------CC-CCCCcccccceEEEEEEeCCCCCCCCCCCEEEE
Q psy7798 114 PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLD------SE-GKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIP 186 (261)
Q Consensus 114 ~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~------~~-~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~ 186 (261)
.+++++.+.|.+++++|+|+|.++|+|++|++...|.. +. ..+|.++|||++|+|+++|++|++|++||+|++
T Consensus 38 ~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 117 (384)
T cd08265 38 ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA 117 (384)
T ss_pred CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence 49999999999999999999999999999999886421 21 335689999999999999999999999999999
Q ss_pred eeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCC-------CChhhhccccchHHHHHHHHhc
Q psy7798 187 LYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMT-------GSLERGSKRDNSFQTTHFAVIK 254 (261)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~-------~s~~eaA~lp~~~~TA~~aL~~ 254 (261)
.+..+|+.|..|..+..+.|..... .|++.++..+....+.++|++ ++++ +|+++..++|||++|..
T Consensus 118 ~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~ 196 (384)
T cd08265 118 EEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFI 196 (384)
T ss_pred CCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHh
Confidence 8888999999999999999886432 233444444444677888875 3445 77788999999999976
Q ss_pred c-cCccc
Q psy7798 255 R-RDFEK 260 (261)
Q Consensus 255 ~-a~L~~ 260 (261)
. +++++
T Consensus 197 ~~~~~~~ 203 (384)
T cd08265 197 RGGGFRP 203 (384)
T ss_pred hcCCCCC
Confidence 5 56553
No 80
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.77 E-value=5.6e-18 Score=151.97 Aligned_cols=150 Identities=27% Similarity=0.354 Sum_probs=121.5
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCC---CCCCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLD---SEGKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~---~~~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
||++.+..++..+.+.+.+.|.|+++||+|+|.++|+|+.|+++..+.. .....|.++|+|++|+|+.+|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 5778888777679999999999999999999999999999998765421 1123456899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCcccccccccc----ccceeeeeeeec-ccccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT----TQLFLTSNVTIS-DFNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
+||+|++....+|+.|..|..+..+.|..... ..|.++.++.++ ....++|+++++ ++++++..+.+||+++.
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~-~~a~~~~~~~~a~~~~~ 158 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPP-EIASIQEPLGNAVHTVL 158 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCH-HHhhhhhHHHHHHHHHH
Confidence 99999998878999999999999988865322 124444454444 778899999988 55578899999999874
No 81
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.77 E-value=7.1e-18 Score=149.68 Aligned_cols=149 Identities=21% Similarity=0.280 Sum_probs=119.0
Q ss_pred eeEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
|+++++.+++ .+++++.+.|.|+++||+|+|.++++|++|++...|.++ .|.++|+|++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGL-DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCC-cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 5788887765 599999999999999999999999999999999988764 4678999999999999987 78999
Q ss_pred EEEEeeccCCCCCcccccCcccccccccc------ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRT------TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
||...+..+|+.|.+|..+....|..... .|++.++..+......++|+++++++++.+ ..+.++| ++...+
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~-~~~~~~ 151 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAAL-EILEQV 151 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHH-HHHHhc
Confidence 99988877899999999988877765321 234444445555778899999999998864 3444555 444677
Q ss_pred Cccc
Q psy7798 257 DFEK 260 (261)
Q Consensus 257 ~L~~ 260 (261)
++++
T Consensus 152 ~~~~ 155 (319)
T cd08242 152 PITP 155 (319)
T ss_pred CCCC
Confidence 6654
No 82
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.77 E-value=5.6e-18 Score=150.73 Aligned_cols=138 Identities=22% Similarity=0.233 Sum_probs=115.5
Q ss_pred eeeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 102 ECKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 102 ~~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
+|+++.+.++|.+ +++.+.+.|.|+++||+|+|.++|+|+.|++...|.++....|.++|+|++|+|+.+|++|+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 3788888887754 88889999999999999999999999999999988876555678899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|++... ..+++.++..+.......+|++++++++++++..++|||+++.+.++++
T Consensus 81 ~Gd~V~~~~~---------------------~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~ 139 (327)
T PRK10754 81 VGDRVVYAQS---------------------ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIK 139 (327)
T ss_pred CCCEEEECCC---------------------CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999985321 0134445555555778899999999999999999999999998877775
Q ss_pred c
Q psy7798 260 K 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 140 ~ 140 (327)
T PRK10754 140 P 140 (327)
T ss_pred C
Confidence 4
No 83
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.76 E-value=6.8e-18 Score=151.35 Aligned_cols=144 Identities=26% Similarity=0.355 Sum_probs=118.0
Q ss_pred ecCCCCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCC---CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEE
Q psy7798 109 WEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLD---SEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVI 185 (261)
Q Consensus 109 ~~~g~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~---~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~ 185 (261)
++++..+++.+.+.|.|+++||+|+|.++++|+.|+.+..+.. .....|.++|+|++|+|+++|++|++|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 4677779999999999999999999999999999998866531 1123456899999999999999999999999999
Q ss_pred EeeccCCCCCcccccCcccccccccc-----ccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 186 PLYIPQCNECKFCKSSKTNLCTKIRT-----TQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
+.....|+.|..|..+..+.|...+. .|++.++.........++|++++++ .|+++..+.|||+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~-~a~~~~~~~~a~~~~~ 156 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPE-YATIQEPLGNAVHTVL 156 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChH-hhhhcchHHHHHHHHH
Confidence 98888899999999999998877422 2344445555557788999999985 5568899999999873
No 84
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.76 E-value=7.4e-18 Score=151.22 Aligned_cols=138 Identities=22% Similarity=0.192 Sum_probs=113.3
Q ss_pred eeEEEEecCCCC---cEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHcCCCC---------------CCCCCcccccc
Q psy7798 103 CKAAVAWEPKKP---LSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLDGLDS---------------EGKFPCVLGHE 163 (261)
Q Consensus 103 ~~~~~~~~~g~~---l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~g~~~---------------~~~~p~~lG~E 163 (261)
|+++++.+++++ +.+.+.+.|.| +++||+|+|.++++|+.|++...|... ....|.++|+|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 577777777764 88888899988 599999999999999999999887421 23457799999
Q ss_pred eEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccc
Q psy7798 164 GSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDN 243 (261)
Q Consensus 164 ~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~ 243 (261)
++|+|+.+|++|++|++||||+++... ...|++.++..+.......+|+++++++++.++.
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~-------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~ 141 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP-------------------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPY 141 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC-------------------CCCccceeEEEecHHHeecCCCCCCHHHHhhchh
Confidence 999999999999999999999986421 0114555566666678889999999999999999
Q ss_pred hHHHHHHHHhcccCcc
Q psy7798 244 SFQTTHFAVIKRRDFE 259 (261)
Q Consensus 244 ~~~TA~~aL~~~a~L~ 259 (261)
.++|||++|.+.++++
T Consensus 142 ~~~ta~~~l~~~~~~~ 157 (350)
T cd08248 142 AGLTAWSALVNVGGLN 157 (350)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999998877764
No 85
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.76 E-value=2.6e-17 Score=146.28 Aligned_cols=157 Identities=21% Similarity=0.170 Sum_probs=120.6
Q ss_pred eeEEEEecCC--CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPK--KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g--~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++...+ +.+.+.+.+.|.++++||+|++.++|+|+.|++...|.++. ...|.++|||++|+|+.+|+.+.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 6788887664 44888888888889999999999999999999999887653 23567899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|++.....|+.+.++..... .+......+++.++.......+.++|+++++.+++.++..++|||++|.+.++++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~ 159 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPTAEDEA-SALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLK 159 (336)
T ss_pred CCCEEEEecccccccccccccccc-cccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCC
Confidence 999999876544443332222211 1112222345556666666788999999999999999999999999998877765
Q ss_pred c
Q psy7798 260 K 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 160 ~ 160 (336)
T cd08276 160 P 160 (336)
T ss_pred C
Confidence 3
No 86
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.75 E-value=2.1e-17 Score=147.08 Aligned_cols=134 Identities=24% Similarity=0.190 Sum_probs=112.3
Q ss_pred eeeEEEEecCCC----CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCC
Q psy7798 102 ECKAAVAWEPKK----PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVT 176 (261)
Q Consensus 102 ~~~~~~~~~~g~----~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~ 176 (261)
.|+++++.+++. ++++++.+.|.|.++||+|+|.++|+|+.|++...|.++. ..+|.++|+|++|+|+.+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 378888877654 5889999999999999999999999999999998887653 45678999999999999999999
Q ss_pred CCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 177 SVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 177 ~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
+|++||+|+++.. |++.++.........++|++ +.++++++.+++|||++|.+.+
T Consensus 81 ~~~~Gd~V~~~~~-----------------------g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~ 135 (329)
T cd08250 81 DFKVGDAVATMSF-----------------------GAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVG 135 (329)
T ss_pred CCCCCCEEEEecC-----------------------cceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhc
Confidence 9999999998531 45556666666778888876 4688899999999999998877
Q ss_pred Cccc
Q psy7798 257 DFEK 260 (261)
Q Consensus 257 ~L~~ 260 (261)
++++
T Consensus 136 ~~~~ 139 (329)
T cd08250 136 EMKS 139 (329)
T ss_pred CCCC
Confidence 7764
No 87
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.75 E-value=2.8e-17 Score=146.11 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=113.4
Q ss_pred eeeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCC
Q psy7798 102 ECKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 102 ~~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
+||++++...+. .+.+.+.+.|.+.++||+|+|.++|+|+.|+....|.++. ...|.++|+|++|+|+++|++++++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 588999887775 3677777778889999999999999999999999886642 3345689999999999999999999
Q ss_pred CCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCc
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDF 258 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L 258 (261)
++||+|+++.. .|++.++.......+.++|+++++++++.++.++.|||++|.+.+++
T Consensus 81 ~~Gd~V~~~~~----------------------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~ 138 (334)
T PTZ00354 81 KEGDRVMALLP----------------------GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDV 138 (334)
T ss_pred CCCCEEEEecC----------------------CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999987631 13455555555577889999999999999999999999999887776
Q ss_pred cc
Q psy7798 259 EK 260 (261)
Q Consensus 259 ~~ 260 (261)
++
T Consensus 139 ~~ 140 (334)
T PTZ00354 139 KK 140 (334)
T ss_pred CC
Confidence 53
No 88
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.75 E-value=1.2e-17 Score=149.89 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=93.6
Q ss_pred cEEEEeeCCCC-CCCeEEEEEEEEEcChhhHHHHc---CCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeecc
Q psy7798 115 LSLETIQVAPP-KAGEVRIKIVSTAICHTDAYTLD---GLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIP 190 (261)
Q Consensus 115 l~~~~~~~p~~-~~~eVlVkV~a~gln~~Dv~~~~---g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~ 190 (261)
+++.+.+.|.| ++|||+|||+|+|||+.|..... |......+|.++|+|++|+|+++|++|++|++||||+++.
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 78888999987 49999999999999999964332 2111134567899999999999999999999999998631
Q ss_pred CCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhh----hccccchHHHHHHHHhcccCccc
Q psy7798 191 QCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLER----GSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~e----aA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+.+.++.++....+.++|+++++++ +++++.+++|||++|.+.+++++
T Consensus 101 ----------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~ 152 (345)
T cd08293 101 ----------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITP 152 (345)
T ss_pred ----------------------CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCC
Confidence 1234444555577888998754332 66789999999999988887763
No 89
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.74 E-value=2.9e-17 Score=144.43 Aligned_cols=130 Identities=14% Similarity=0.074 Sum_probs=105.5
Q ss_pred eeEEEEecCC-CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPK-KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g-~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++.+.+ ..+++.+.+.|.++++||+|++.++|+|+.|++...+. ..|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G 76 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG 76 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence 4677776654 22667788888999999999999999999999887632 224689999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCc
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDF 258 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L 258 (261)
|+|+++.. .|++.++.......+.++|+++++++++++++.++|||+++...+.+
T Consensus 77 d~V~~~~~----------------------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~ 131 (305)
T cd08270 77 ARVVGLGA----------------------MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL 131 (305)
T ss_pred CEEEEecC----------------------CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC
Confidence 99987531 14455555555578889999999999999999999999999766543
No 90
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.74 E-value=1.4e-17 Score=149.52 Aligned_cols=141 Identities=24% Similarity=0.228 Sum_probs=113.3
Q ss_pred eeEEEEecCC-CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy7798 103 CKAAVAWEPK-KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPG 181 (261)
Q Consensus 103 ~~~~~~~~~g-~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vG 181 (261)
|+++++..++ ..+++.+.+.|.|+++||+|+|.++|+|++|+....+.+ ....|.++|+|++|+|+.+|++++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 5788888775 448888999999999999999999999999998775544 12245789999999999999999999999
Q ss_pred CEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCc
Q psy7798 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDF 258 (261)
Q Consensus 182 DrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L 258 (261)
|+|+++....++ .....|++.++.........++|+++++++++++++.++|||++|.+.+++
T Consensus 80 d~V~~~~~~~~~--------------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~ 142 (339)
T cd08249 80 DRVAGFVHGGNP--------------NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGL 142 (339)
T ss_pred CEEEEEeccccC--------------CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccC
Confidence 999987643221 111224555555665577889999999999999999999999999877665
No 91
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.73 E-value=4.3e-17 Score=144.48 Aligned_cols=137 Identities=21% Similarity=0.186 Sum_probs=110.2
Q ss_pred eeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++.++++ ++++++.+.|.|+++||+|+|.++|+|++|++...|.++. ..+|.++|||++|+|+++ +++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 67888888775 6999999999999999999999999999999999887643 234678999999999999 567899
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+||+|++.... ......|++.++.......+.++|+++++++++.++++++|||++|....+
T Consensus 79 ~Gd~V~~~~~~----------------~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~ 140 (325)
T cd05280 79 EGDEVLVTGYD----------------LGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLED 140 (325)
T ss_pred CCCEEEEcccc----------------cCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhh
Confidence 99999885310 000112445555555557889999999999999999999999999976543
No 92
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.73 E-value=4.9e-17 Score=146.40 Aligned_cols=139 Identities=22% Similarity=0.190 Sum_probs=108.7
Q ss_pred eEEEEecCCCCcEEEEeeCCCC---CCCeEEEEEEEEEcChhhHHHHcCCCCCCC-CCcccccceEEEEEEeCCCCC-CC
Q psy7798 104 KAAVAWEPKKPLSLETIQVAPP---KAGEVRIKIVSTAICHTDAYTLDGLDSEGK-FPCVLGHEGSGIVESVGEGVT-SV 178 (261)
Q Consensus 104 ~~~~~~~~g~~l~~~~~~~p~~---~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~-~p~~lG~E~~G~V~~vG~~v~-~~ 178 (261)
+++++.+++++++++.++.|.| ++++|+|+|.++|+|++|+....+...... .|.++|+|++|+|+++|++|+ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 5678888888888887776665 899999999999999999988765332111 367899999999999999998 89
Q ss_pred CCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeec-c----cccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTIS-D----FNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~----~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
++||+|+++....+ . . .+.++.++.++ . ...++|+++++++++.++++++|||++|.
T Consensus 82 ~~Gd~V~~~~~~~~--------------~---~-~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~ 143 (352)
T cd08247 82 KVGDEVCGIYPHPY--------------G---G-QGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILE 143 (352)
T ss_pred CCCCEEEEeecCCC--------------C---C-CceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHH
Confidence 99999998653211 1 1 23444554444 4 57899999999999999999999999998
Q ss_pred ccc-Cccc
Q psy7798 254 KRR-DFEK 260 (261)
Q Consensus 254 ~~a-~L~~ 260 (261)
+.+ ++++
T Consensus 144 ~~~~~~~~ 151 (352)
T cd08247 144 DLGQKLGP 151 (352)
T ss_pred HhhhccCC
Confidence 776 5653
No 93
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.73 E-value=8.4e-17 Score=142.55 Aligned_cols=137 Identities=22% Similarity=0.235 Sum_probs=108.8
Q ss_pred eeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC---CCCCcccccceEEEEEEeCCCCCC
Q psy7798 103 CKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE---GKFPCVLGHEGSGIVESVGEGVTS 177 (261)
Q Consensus 103 ~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~---~~~p~~lG~E~~G~V~~vG~~v~~ 177 (261)
|+++.+.+++.+ +.+.+.+.|.+.+++|+|+|.++|+|+.|++...|..+. ...|.++|+|++|+|+++|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 567777765543 667777777789999999999999999999999886542 334678999999999999999999
Q ss_pred CCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 178 VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 178 ~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+++||+|+++.. ...|++..+..+....+.++|++++++++++++..++|| +++...++
T Consensus 81 ~~~Gd~V~~~~~--------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta-~~~~~~~~ 139 (324)
T cd08244 81 AWLGRRVVAHTG--------------------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTA-LGLLDLAT 139 (324)
T ss_pred CCCCCEEEEccC--------------------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHH-HHHHHhcC
Confidence 999999988641 011444455555557788999999999999999999999 56667777
Q ss_pred ccc
Q psy7798 258 FEK 260 (261)
Q Consensus 258 L~~ 260 (261)
+++
T Consensus 140 ~~~ 142 (324)
T cd08244 140 LTP 142 (324)
T ss_pred CCC
Confidence 653
No 94
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.72 E-value=6.7e-17 Score=144.13 Aligned_cols=139 Identities=19% Similarity=0.118 Sum_probs=112.4
Q ss_pred eeEEEEecCCCC-----cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy7798 103 CKAAVAWEPKKP-----LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTS 177 (261)
Q Consensus 103 ~~~~~~~~~g~~-----l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~ 177 (261)
|+++++.++++. +.+.+.+.|.+.+++|+|++.++|+|+.|++...|.++....|.++|+|++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 467888877753 666777888889999999999999999999998887654445678999999999999999999
Q ss_pred CCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 178 VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 178 ~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
|++||+|++... ....+++.++..+....+.++|+++++++++.+++.++|||++|.+.++
T Consensus 81 ~~~Gd~V~~~~~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~ 141 (336)
T cd08252 81 FKVGDEVYYAGD-------------------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLG 141 (336)
T ss_pred CCCCCEEEEcCC-------------------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcC
Confidence 999999987421 0011445555555557788999999999999999999999999988877
Q ss_pred ccc
Q psy7798 258 FEK 260 (261)
Q Consensus 258 L~~ 260 (261)
+++
T Consensus 142 ~~~ 144 (336)
T cd08252 142 ISE 144 (336)
T ss_pred CCC
Confidence 653
No 95
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.72 E-value=1e-16 Score=141.71 Aligned_cols=139 Identities=26% Similarity=0.235 Sum_probs=115.0
Q ss_pred eeEEEEecCC--CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 103 CKAAVAWEPK--KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 103 ~~~~~~~~~g--~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
|+++++.+++ ..+.+.+.+.|.+.+++|+|+|.++|+|+.|+....|.++....|.++|||++|+|+.+|+++.++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 6788888888 46999999999999999999999999999999988776543233678999999999999999999999
Q ss_pred CCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
||+|+++... ...+++.++.......+.++|+++++.+++.++..++|||+++.+.+++++
T Consensus 81 Gd~V~~~~~~-------------------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~ 141 (325)
T cd08271 81 GDRVAYHASL-------------------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEA 141 (325)
T ss_pred CCEEEeccCC-------------------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 9999986410 011445555555557888999999999999999999999999988777653
No 96
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.72 E-value=1.1e-16 Score=142.31 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=112.4
Q ss_pred eEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 104 KAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 104 ~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
+++.+...+. .+++.+.+.|.|.++||+|+|.++|+|+.|+.+..|.++. ..+|.++|+|++|+|+.+|++|++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 5677776664 3888888999999999999999999999999999887643 245778999999999999999999999
Q ss_pred CCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
||+|+++.. .+++.++.........++|++++++++++++..++|||++|.+.+++++
T Consensus 82 Gd~V~~~~~----------------------~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~ 139 (331)
T cd08273 82 GDRVAALTR----------------------VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLT 139 (331)
T ss_pred CCEEEEeCC----------------------CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCC
Confidence 999998641 1445555555557788999999999999999999999999987776653
No 97
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.72 E-value=5.6e-17 Score=139.44 Aligned_cols=127 Identities=30% Similarity=0.434 Sum_probs=105.9
Q ss_pred eEEEEEEEEEcChhhHHHHcCCCC-CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCcccccc
Q psy7798 129 EVRIKIVSTAICHTDAYTLDGLDS-EGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCT 207 (261)
Q Consensus 129 eVlVkV~a~gln~~Dv~~~~g~~~-~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~ 207 (261)
||+|+|.++++|+.|++...|.++ ....|.++|+|++|+|+++|++++.|++||+|++.....|+.|..|.. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999988765 344578899999999999999999999999999988888999999986 443
Q ss_pred ccc-----cccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 208 KIR-----TTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 208 ~~~-----~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
... ..+.+.++.........++|+++++++++.++..+.|||+++...+.++
T Consensus 77 ~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~ 133 (271)
T cd05188 77 GGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLK 133 (271)
T ss_pred CCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCC
Confidence 322 1244555555555788999999999999999999999999998777654
No 98
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.71 E-value=1.3e-16 Score=140.39 Aligned_cols=141 Identities=26% Similarity=0.292 Sum_probs=112.8
Q ss_pred eeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++...+. .+.+.+++.|.+.+++|+|++.++++|+.|++...|.++. ...|.++|||++|+|+++|+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 45666665553 3788888888999999999999999999999998886542 34577899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|++...+.. ...+++.++.........++|++++++++++++..+.|||++|..+++++
T Consensus 81 ~Gd~v~~~~~~~~-----------------~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~ 143 (325)
T cd08253 81 VGDRVWLTNLGWG-----------------RRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAK 143 (325)
T ss_pred CCCEEEEeccccC-----------------CCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCC
Confidence 9999998752100 01144445555555778899999999999999999999999998877765
Q ss_pred c
Q psy7798 260 K 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 144 ~ 144 (325)
T cd08253 144 A 144 (325)
T ss_pred C
Confidence 3
No 99
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.71 E-value=1.7e-16 Score=139.98 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=113.2
Q ss_pred eeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++.+++.+ +.+.+.+.|.+.+++|+|+|.++++|+.|+....|.++. ...|.++|+|++|+|+.+|+++.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 578888877754 788888888889999999999999999999998886541 23467899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|+++..+. ....|++.++..........+|+++++.+++.++..+.|||++|.+.++++
T Consensus 81 ~Gd~V~~~~~~~-----------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 143 (326)
T cd08272 81 VGDEVYGCAGGL-----------------GGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQ 143 (326)
T ss_pred CCCEEEEccCCc-----------------CCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence 999999864210 001144445555555778899999999999999999999999998887775
Q ss_pred c
Q psy7798 260 K 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 144 ~ 144 (326)
T cd08272 144 A 144 (326)
T ss_pred C
Confidence 3
No 100
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.71 E-value=1.4e-16 Score=142.82 Aligned_cols=132 Identities=20% Similarity=0.062 Sum_probs=99.6
Q ss_pred eeEEEEecCC-CCcEEEEeeC----CCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccce--EEEEEEeCCC
Q psy7798 103 CKAAVAWEPK-KPLSLETIQV----APPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEG--SGIVESVGEG 174 (261)
Q Consensus 103 ~~~~~~~~~g-~~l~~~~~~~----p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~--~G~V~~vG~~ 174 (261)
++++....+. +.|++.+.+. |+|++|||+|||+|+|||+.|++...|..+. ...|.++|+++ .|++..||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~ 87 (338)
T cd08295 8 LKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSG 87 (338)
T ss_pred EecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecC
Confidence 4444433333 3488888776 7899999999999999999999999885432 24567889754 4566668899
Q ss_pred CCCCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecc--cccccC-CCCChh-hhccccchHHHHHH
Q psy7798 175 VTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISD--FNMGYS-MTGSLE-RGSKRDNSFQTTHF 250 (261)
Q Consensus 175 v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~-~~~s~~-eaA~lp~~~~TA~~ 250 (261)
+++|++||+|+++ ++ +++|+.++. .+.++| ++++++ ++|+++++++|||+
T Consensus 88 v~~~~vGd~V~~~-------------------------g~-~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~ 141 (338)
T cd08295 88 NPDFKVGDLVWGF-------------------------TG-WEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYA 141 (338)
T ss_pred CCCCCCCCEEEec-------------------------CC-ceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHH
Confidence 9999999999863 22 344444444 567775 678887 89999999999999
Q ss_pred HHhcccCccc
Q psy7798 251 AVIKRRDFEK 260 (261)
Q Consensus 251 aL~~~a~L~~ 260 (261)
+|.+.+++++
T Consensus 142 ~l~~~~~~~~ 151 (338)
T cd08295 142 GFYEVCKPKK 151 (338)
T ss_pred HHHHhcCCCC
Confidence 9988887764
No 101
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.70 E-value=2.4e-16 Score=139.02 Aligned_cols=140 Identities=21% Similarity=0.243 Sum_probs=109.5
Q ss_pred eeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 103 CKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
|+++.+...+. .+.+.+.+.|.++++||+|+|.++|+|+.|+....|.++....|.++|+|++|+|+++|. ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 46677766553 367777777788999999999999999999999988765555578899999999999995 57999
Q ss_pred CCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
||+|+++....+ . ...|++.++.........++|++++++++++++.+++|||++|.+.+++++
T Consensus 79 Gd~V~~~~~~~~--------------~--~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~ 142 (320)
T cd08243 79 GQRVATAMGGMG--------------R--TFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQP 142 (320)
T ss_pred CCEEEEecCCCC--------------C--CCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCC
Confidence 999998642110 0 111344444455557788999999999999999999999999988776653
No 102
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.70 E-value=4.4e-16 Score=136.71 Aligned_cols=135 Identities=26% Similarity=0.293 Sum_probs=110.8
Q ss_pred eeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
||++++.+.+.+ +++.+.+.|.+.+++|+|+|.++|+|+.|++...|.++. ...|.++|+|++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 578888776543 778788777889999999999999999999998886542 33568899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|+++.. .+++.++.........++|+++++.++++++..+.|||+++.+.++++
T Consensus 81 ~Gd~V~~~~~----------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~ 138 (323)
T cd05276 81 VGDRVCALLA----------------------GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLK 138 (323)
T ss_pred CCCEEEEecC----------------------CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCC
Confidence 9999987631 134444445555778899999999999999999999999998777664
No 103
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.69 E-value=2.3e-16 Score=140.58 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=87.9
Q ss_pred cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCC
Q psy7798 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNE 194 (261)
Q Consensus 115 l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~ 194 (261)
|++.+.+.|.|++|||+|||+|+|+|+.|. .|.++....|.++|.|++|+|.++|+ +|++||||+++.
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~~------ 86 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLASP------ 86 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEec------
Confidence 888899999999999999999999999654 44433233467999999999999874 699999998742
Q ss_pred CcccccCccccccccccccceeeeeeeecccc----cccCCCCChhhh-ccccchHHHHHHHHhcccCccc
Q psy7798 195 CKFCKSSKTNLCTKIRTTQLFLTSNVTISDFN----MGYSMTGSLERG-SKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~s~~ea-A~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++.++.......+ .++|+++++++| ++++++++|||++|.+.+++++
T Consensus 87 -------------------~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~ 138 (325)
T TIGR02825 87 -------------------GWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKG 138 (325)
T ss_pred -------------------CceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCC
Confidence 0111222222232 344889999998 7899999999999988888764
No 104
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.68 E-value=5.5e-16 Score=137.83 Aligned_cols=128 Identities=15% Similarity=0.044 Sum_probs=95.0
Q ss_pred eeeEEEEecC--CC----CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCC
Q psy7798 102 ECKAAVAWEP--KK----PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGV 175 (261)
Q Consensus 102 ~~~~~~~~~~--g~----~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v 175 (261)
.|+++++.++ ++ .+++.+.+.|.|++|||+|||+++|||+.|.....+ + ...|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~-~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L-NEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C-CCCCcEecceEEEEEec---CC
Confidence 4778887762 33 278889999999999999999999999987652211 1 23578999999999985 55
Q ss_pred CCCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecc---cccccCCCCC--h---hhhccccchHHH
Q psy7798 176 TSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISD---FNMGYSMTGS--L---ERGSKRDNSFQT 247 (261)
Q Consensus 176 ~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~s--~---~eaA~lp~~~~T 247 (261)
++|++||||+++. ++.++...... .+..+|++++ + .++++++++++|
T Consensus 76 ~~~~~Gd~V~~~~-------------------------~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~t 130 (329)
T cd08294 76 SKFPVGTIVVASF-------------------------GWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLT 130 (329)
T ss_pred CCCCCCCEEEeeC-------------------------CeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHH
Confidence 7899999998641 12233333334 6677888887 2 334579999999
Q ss_pred HHHHHhcccCccc
Q psy7798 248 THFAVIKRRDFEK 260 (261)
Q Consensus 248 A~~aL~~~a~L~~ 260 (261)
||++|.+.+++++
T Consensus 131 a~~al~~~~~~~~ 143 (329)
T cd08294 131 AYFGLLEICKPKA 143 (329)
T ss_pred HHHHHHHhcCCCC
Confidence 9999988887764
No 105
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.68 E-value=9.8e-16 Score=138.27 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=96.2
Q ss_pred eeeeEEEEecCC------CCcEEEEe---eCC-CCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCccccc--ceEEEE
Q psy7798 101 IECKAAVAWEPK------KPLSLETI---QVA-PPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGH--EGSGIV 168 (261)
Q Consensus 101 ~~~~~~~~~~~g------~~l~~~~~---~~p-~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~--E~~G~V 168 (261)
.+++.+.+.... +.+++.+. +.| ++++|||+|||.|+|+|+.|.....+..+....|.++|+ |++|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~v 86 (348)
T PLN03154 7 VENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGVS 86 (348)
T ss_pred ccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEEE
Confidence 345666653321 12666653 444 458999999999999999987654432222235788997 889999
Q ss_pred EEeCCCCCCCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecc-c--c--cccCCCCChh-hhcccc
Q psy7798 169 ESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISD-F--N--MGYSMTGSLE-RGSKRD 242 (261)
Q Consensus 169 ~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~--~~~~~~~s~~-eaA~lp 242 (261)
..+|++|++|++||+|+++ +++ +++..++. . . ..+|++++++ +||+++
T Consensus 87 ~~vg~~v~~~~~Gd~V~~~-------------------------~~~-aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~ 140 (348)
T PLN03154 87 KVVDSDDPNFKPGDLISGI-------------------------TGW-EEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLG 140 (348)
T ss_pred EEEecCCCCCCCCCEEEec-------------------------CCc-EEEEEEeccccceEEccCcCCCCHHHHHHHcc
Confidence 9999999999999999863 222 33444443 1 2 3458889997 788999
Q ss_pred chHHHHHHHHhcccCccc
Q psy7798 243 NSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 243 ~~~~TA~~aL~~~a~L~~ 260 (261)
++++|||++|.+.+++++
T Consensus 141 ~~~~TA~~al~~~~~~~~ 158 (348)
T PLN03154 141 MAGFTAYAGFYEVCSPKK 158 (348)
T ss_pred cHHHHHHHHHHHhcCCCC
Confidence 999999999988887764
No 106
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.68 E-value=7.4e-16 Score=136.75 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=105.2
Q ss_pred eEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCCC
Q psy7798 104 KAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVAP 180 (261)
Q Consensus 104 ~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~v 180 (261)
|++++...+. .+++++.|.|.++++||+|+|.++|+|+.|++...|.++. ...|.++|+|++|+|+. +++..|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 4566666665 4789999999999999999999999999999999887642 23478899999999988 56788999
Q ss_pred CCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 181 GDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 181 GDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
||+|++..... +. ...|.+..+.......+.++|++++++++++++..++|||+++...
T Consensus 79 Gd~V~~~~~~~--------------~~--~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~ 137 (323)
T TIGR02823 79 GDEVIVTGYGL--------------GV--SHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMAL 137 (323)
T ss_pred CCEEEEccCCC--------------CC--CCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHh
Confidence 99998764210 00 0114444555555578889999999999999999999999988544
No 107
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.67 E-value=7.2e-16 Score=136.90 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=104.5
Q ss_pred eeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC-CCCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS-EGKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~-~~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++.+++++ +.+++.+.|.|+++||+|++.++|+|++|++...+... ...+|.++|||++|+|+++| +.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 678888877764 77888999999999999999999999999877653211 12347889999999999954 57899
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
+||+|++..... + ....|++.++.......+.++|+++++++++.++..++|||++|...
T Consensus 79 ~Gd~V~~~~~~~---------~-------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~ 138 (326)
T cd08289 79 PGDEVIVTSYDL---------G-------VSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRL 138 (326)
T ss_pred CCCEEEEccccc---------C-------CCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHH
Confidence 999998764210 0 00114455555555578889999999999999999999999998643
No 108
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.67 E-value=1.7e-15 Score=132.78 Aligned_cols=133 Identities=26% Similarity=0.279 Sum_probs=107.9
Q ss_pred EEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 105 AAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 105 ~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
++....++. .+.+.+.+.+.+++++|+|+|.++|+|+.|++...|.++. .+|.++|+|++|+|+.+|+++.+|++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (320)
T cd05286 2 AVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVGD 80 (320)
T ss_pred eEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCCC
Confidence 344444443 3666677777789999999999999999999999887653 4467899999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+|+++. ..+++.++.........++|++++++++++++..++|||++|.+.+++++
T Consensus 81 ~V~~~~----------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 136 (320)
T cd05286 81 RVAYAG----------------------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKP 136 (320)
T ss_pred EEEEec----------------------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCC
Confidence 998853 01455555566667788999999999999999999999999988777754
No 109
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.66 E-value=1.3e-15 Score=135.10 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=106.8
Q ss_pred eeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++++.++|+ .+++++.+.|+|+++||+|+|.++++|+.|+++..|.++. ..+|.++|+|++|+|++ +++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 67888887775 4889999999999999999999999999999998886532 23467889999999998 7788899
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHh
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVI 253 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~ 253 (261)
+||+|+++... .+. ...+++.++..+....+.++|++++++++++++..++||++++.
T Consensus 79 ~Gd~V~~~~~~--------------~~~--~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~ 136 (324)
T cd08288 79 PGDRVVLTGWG--------------VGE--RHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVM 136 (324)
T ss_pred CCCEEEECCcc--------------CCC--CCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHH
Confidence 99999885310 000 01245555556666788999999999999999999999998875
No 110
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.66 E-value=1.3e-15 Score=133.23 Aligned_cols=138 Identities=24% Similarity=0.246 Sum_probs=110.3
Q ss_pred eeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC---CCCCCcccccceEEEEEEeCCCCCC
Q psy7798 103 CKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS---EGKFPCVLGHEGSGIVESVGEGVTS 177 (261)
Q Consensus 103 ~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~---~~~~p~~lG~E~~G~V~~vG~~v~~ 177 (261)
|+++.+..++.. +.+.+.+.|.+++++|+|+|.++++|+.|++...|.++ ....|..+|+|++|+|+.+|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 466777666543 56777777788999999999999999999999888653 2334678999999999999999999
Q ss_pred CCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccC
Q psy7798 178 VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRD 257 (261)
Q Consensus 178 ~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~ 257 (261)
+++||+|+++... ...+++.++..........+|+++++.+++.++..+.|||+++...++
T Consensus 81 ~~~G~~V~~~~~~-------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 141 (309)
T cd05289 81 FKVGDEVFGMTPF-------------------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGG 141 (309)
T ss_pred CCCCCEEEEccCC-------------------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcC
Confidence 9999999986520 011455555556667788999999999999999999999999987765
Q ss_pred cc
Q psy7798 258 FE 259 (261)
Q Consensus 258 L~ 259 (261)
++
T Consensus 142 ~~ 143 (309)
T cd05289 142 LK 143 (309)
T ss_pred CC
Confidence 54
No 111
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.66 E-value=9e-16 Score=135.87 Aligned_cols=124 Identities=25% Similarity=0.339 Sum_probs=104.1
Q ss_pred cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCC
Q psy7798 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCN 193 (261)
Q Consensus 115 l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~ 193 (261)
+++.+.+.|.+++++|+|+|.++++|+.|+....|.++. ...|.++|+|++|+|+.+|++|+++++||+|+++..
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 667788888899999999999999999999998876542 345678999999999999999999999999998641
Q ss_pred CCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 194 ECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
.|++.++.........++|+++++++++.+++.++|||+++...+++++
T Consensus 90 ------------------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~ 138 (323)
T cd05282 90 ------------------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPP 138 (323)
T ss_pred ------------------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCC
Confidence 1445555555557788999999999999999999999999988776653
No 112
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.65 E-value=2.5e-15 Score=132.48 Aligned_cols=140 Identities=24% Similarity=0.252 Sum_probs=109.7
Q ss_pred eeEEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++.+...+. .+.+.+.+.|.+++++|+|+|.++++|+.|+....|.++. ...|.++|+|++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 45666665553 3777777777889999999999999999999988776542 23467899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|+++..... ...+.+.++..........+|++++++++++++..+.|||+++...++++
T Consensus 81 ~Gd~V~~~~~~~~-----------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 143 (328)
T cd08268 81 VGDRVSVIPAADL-----------------GQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLR 143 (328)
T ss_pred CCCEEEecccccc-----------------CCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCC
Confidence 9999998642110 11133444555555778899999999999999999999999998777664
No 113
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.63 E-value=6.1e-15 Score=129.86 Aligned_cols=136 Identities=26% Similarity=0.276 Sum_probs=107.9
Q ss_pred eeEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Q psy7798 103 CKAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVA 179 (261)
Q Consensus 103 ~~~~~~~~~g~~--l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~ 179 (261)
|+++.....+.+ +.+.+.+.+.+++++|+|+|.++++|+.|++...|.++. ..+|.++|+|++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 456666665544 667777666789999999999999999999998876542 23467899999999999999999999
Q ss_pred CCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 180 PGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 180 vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
+||+|+++.. .+++.++.........++|+++++.++++++..++|||+++.+.++++
T Consensus 81 ~Gd~V~~~~~----------------------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~ 138 (325)
T TIGR02824 81 VGDRVCALVA----------------------GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLK 138 (325)
T ss_pred CCCEEEEccC----------------------CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 9999988531 023334444444677889999999999999999999999988887775
Q ss_pred c
Q psy7798 260 K 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 139 ~ 139 (325)
T TIGR02824 139 A 139 (325)
T ss_pred C
Confidence 3
No 114
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.63 E-value=6.8e-16 Score=135.09 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=82.7
Q ss_pred ccccceEEEEEEeCCCCC------CCCCCCEEEEeeccCCCCCcccccCcccccccccc-----------ccceeeeeee
Q psy7798 159 VLGHEGSGIVESVGEGVT------SVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT-----------TQLFLTSNVT 221 (261)
Q Consensus 159 ~lG~E~~G~V~~vG~~v~------~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~ 221 (261)
++|||++|+|+++|++|+ +|++||||+..+..+|+.|.+|..+..+.|..... ..|.+++++.
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~ 80 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH 80 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence 479999999999999999 89999999988878899999999999999986432 1255566666
Q ss_pred ec-c-cccccCCCCChhhhccccchHHHHHHHHhcc
Q psy7798 222 IS-D-FNMGYSMTGSLERGSKRDNSFQTTHFAVIKR 255 (261)
Q Consensus 222 ~~-~-~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~ 255 (261)
++ . ...++|+++++++++.+++++.|||++|...
T Consensus 81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~ 116 (280)
T TIGR03366 81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAA 116 (280)
T ss_pred ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhc
Confidence 55 4 4889999999999999999999999998543
No 115
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.63 E-value=7.1e-15 Score=130.51 Aligned_cols=133 Identities=25% Similarity=0.296 Sum_probs=106.2
Q ss_pred EEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCCCCC
Q psy7798 106 AVAWEPKK--PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 106 ~~~~~~g~--~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
+.....+. .+.+.+.+.|.|++++|+|++.++|+|+.|++...|.++. ...|.++|+|++|+|+.+|+++.+|++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 82 (337)
T cd08275 3 VVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGD 82 (337)
T ss_pred EEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCCC
Confidence 44444442 3777777777889999999999999999999998886642 23467899999999999999999999999
Q ss_pred EEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+|+++.. .+.+.++..........+|+++++++++.++..++|||+++...+++++
T Consensus 83 ~V~~~~~----------------------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 138 (337)
T cd08275 83 RVMGLTR----------------------FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRP 138 (337)
T ss_pred EEEEecC----------------------CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCC
Confidence 9998641 0334444444456788999999999999999999999999988777653
No 116
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.62 E-value=4.5e-15 Score=130.82 Aligned_cols=125 Identities=22% Similarity=0.183 Sum_probs=102.4
Q ss_pred EEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC---CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCC
Q psy7798 116 SLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS---EGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQC 192 (261)
Q Consensus 116 ~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~---~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~ 192 (261)
++.+.+.|+|+++||+|++.++|+|+.|++...|.++ ....|..+|+|++|+|+++|++++++++||+|+++...
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~-- 92 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP-- 92 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence 6778888899999999999999999999999888653 12345689999999999999999999999999886421
Q ss_pred CCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 193 NECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
...+++.++.........++|+++++++++.++..+.|||+++...++++
T Consensus 93 -----------------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 142 (319)
T cd08267 93 -----------------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVK 142 (319)
T ss_pred -----------------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCC
Confidence 01144445555555778899999999999999999999999998777664
No 117
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.60 E-value=8.5e-15 Score=127.83 Aligned_cols=118 Identities=31% Similarity=0.331 Sum_probs=96.7
Q ss_pred CCCCCCCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCccccc
Q psy7798 122 VAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKS 200 (261)
Q Consensus 122 ~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~ 200 (261)
.|.+.+++|+|++.++++|+.|++...|.++. ..+|.++|+|++|+|+++|+++++|++||+|+++...
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 47789999999999999999999999887643 3457789999999999999999999999999886421
Q ss_pred CccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 201 SKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 201 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
..|++.++.........++|++++++++++++..++|||++| +.+++++
T Consensus 72 ----------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~ 120 (303)
T cd08251 72 ----------SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAK 120 (303)
T ss_pred ----------CCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCC
Confidence 113344444444467889999999999999999999999998 4676654
No 118
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.60 E-value=8.9e-15 Score=128.89 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=96.2
Q ss_pred CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHH-cCCCCC--CCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeecc
Q psy7798 114 PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTL-DGLDSE--GKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIP 190 (261)
Q Consensus 114 ~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~-~g~~~~--~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~ 190 (261)
.+++.+++.|.+.++||+|+|.++|+|+.|++.. .|..+. ...|.++|+|++|+|+++|++++++++||+|+++..
T Consensus 6 ~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~- 84 (312)
T cd08269 6 RFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSG- 84 (312)
T ss_pred eeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEecC-
Confidence 3888899999999999999999999999999988 776432 223678999999999999999999999999998641
Q ss_pred CCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhcccc-chHHHHHHHHhcccCccc
Q psy7798 191 QCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRD-NSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp-~~~~TA~~aL~~~a~L~~ 260 (261)
+++.++.........++|+++ .+++++ .+++|||+++. .+++++
T Consensus 85 ----------------------g~~~~~~~v~~~~~~~lP~~~---~~~~~~~~~~~~a~~~~~-~~~~~~ 129 (312)
T cd08269 85 ----------------------GAFAEYDLADADHAVPLPSLL---DGQAFPGEPLGCALNVFR-RGWIRA 129 (312)
T ss_pred ----------------------CcceeeEEEchhheEECCCch---hhhHHhhhhHHHHHHHHH-hcCCCC
Confidence 445555555557788999888 234455 88999999985 777654
No 119
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.57 E-value=6.1e-14 Score=123.23 Aligned_cols=134 Identities=29% Similarity=0.373 Sum_probs=105.4
Q ss_pred eeEEEEecCCC--CcEEEEeeCCCCC-CCeEEEEEEEEEcChhhHHHHcCCCCC-CCCCcccccceEEEEEEeCCCCCCC
Q psy7798 103 CKAAVAWEPKK--PLSLETIQVAPPK-AGEVRIKIVSTAICHTDAYTLDGLDSE-GKFPCVLGHEGSGIVESVGEGVTSV 178 (261)
Q Consensus 103 ~~~~~~~~~g~--~l~~~~~~~p~~~-~~eVlVkV~a~gln~~Dv~~~~g~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~ 178 (261)
|+++++...+. .+.+.+.+ |.+. +++|+|++.++++|+.|++...|.+.. ...|.++|+|++|+|+.+|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 46777765443 36676766 6666 499999999999999999998886642 2335688999999999999999999
Q ss_pred CCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCc
Q psy7798 179 APGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDF 258 (261)
Q Consensus 179 ~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L 258 (261)
++||+|+++.. .+++.++.........++|+++++.++++++..+.+||+++...+++
T Consensus 80 ~~G~~V~~~~~----------------------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 137 (323)
T cd08241 80 KVGDRVVALTG----------------------QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARL 137 (323)
T ss_pred CCCCEEEEecC----------------------CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCC
Confidence 99999998641 13344444455567888999999999999999999999999777766
Q ss_pred c
Q psy7798 259 E 259 (261)
Q Consensus 259 ~ 259 (261)
+
T Consensus 138 ~ 138 (323)
T cd08241 138 Q 138 (323)
T ss_pred C
Confidence 4
No 120
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.53 E-value=1.7e-13 Score=121.83 Aligned_cols=120 Identities=13% Similarity=-0.007 Sum_probs=92.0
Q ss_pred CcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCC---CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeecc
Q psy7798 114 PLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS---EGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIP 190 (261)
Q Consensus 114 ~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~---~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~ 190 (261)
.+++.+.+.|.+++++|+|||.++|+|+.|.....+... ....+.++|+|++|+|+++|++ +|++||||+++
T Consensus 19 ~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~--- 93 (329)
T cd05288 19 DFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSGF--- 93 (329)
T ss_pred ceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEecc---
Confidence 388899999999999999999999999987655544311 1112467899999999999964 79999999874
Q ss_pred CCCCCcccccCccccccccccccceeeeeeeec-ccccccCCCCC--hhhhcc-ccchHHHHHHHHhcccCccc
Q psy7798 191 QCNECKFCKSSKTNLCTKIRTTQLFLTSNVTIS-DFNMGYSMTGS--LERGSK-RDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~s--~~eaA~-lp~~~~TA~~aL~~~a~L~~ 260 (261)
+++.++..+.. ..+.++|++++ +.++++ ++.++.|||++|.+.+++++
T Consensus 94 ----------------------~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~ 145 (329)
T cd05288 94 ----------------------LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKP 145 (329)
T ss_pred ----------------------cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCC
Confidence 12344444445 67788998884 666666 99999999999987776653
No 121
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.51 E-value=1.2e-13 Score=119.35 Aligned_cols=108 Identities=26% Similarity=0.305 Sum_probs=90.8
Q ss_pred CeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCcccccc
Q psy7798 128 GEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCT 207 (261)
Q Consensus 128 ~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~ 207 (261)
+||+|+|.++|+|+.|++...|.++ ..|.++|+|++|+|+++|+++++|++||+|+++..
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~------------------ 60 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP------------------ 60 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec------------------
Confidence 5899999999999999999988653 34678999999999999999999999999988641
Q ss_pred ccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 208 KIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 208 ~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+++..+..+......++|+++++.+++.++.++.|||+++.+.+++++
T Consensus 61 -----g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 61 -----GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred -----CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 334444455557788999999999999999999999999988777653
No 122
>KOG1198|consensus
Probab=99.48 E-value=5.3e-13 Score=120.05 Aligned_cols=119 Identities=29% Similarity=0.361 Sum_probs=87.2
Q ss_pred cEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCC----CCCcccccceEEE---EEEeC-CCCCCCCCCCEEEE
Q psy7798 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEG----KFPCVLGHEGSGI---VESVG-EGVTSVAPGDHVIP 186 (261)
Q Consensus 115 l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~----~~p~~lG~E~~G~---V~~vG-~~v~~~~vGDrV~~ 186 (261)
+...+.+.|.|.+++++|++.++++|+.|+++..|.+... .+|.+++.+++|+ +..+| ..+..+..||++..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 4456788999999999999999999999999999987643 3554444444443 33334 23344555555544
Q ss_pred eeccCCCCCcccccCccccccccccccceeeeeeee-cccccccCCCCChhhhccccchHHHHHHHHhccc
Q psy7798 187 LYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTI-SDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRR 256 (261)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a 256 (261)
... .+.+++|+++ .....++|++++|++||++|.+++|||.+|+..+
T Consensus 100 ~~~-----------------------~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~ 147 (347)
T KOG1198|consen 100 FLS-----------------------SGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLA 147 (347)
T ss_pred ccC-----------------------CCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhcc
Confidence 332 4445555555 5778899999999999999999999999999988
No 123
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.42 E-value=9.5e-13 Score=113.62 Aligned_cols=103 Identities=26% Similarity=0.307 Sum_probs=85.9
Q ss_pred EEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCccccccccc
Q psy7798 131 RIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIR 210 (261)
Q Consensus 131 lVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (261)
+|||.++++|+.|++...|.++. |.++|+|++|+|+.+|+++++|++||+|+++..
T Consensus 1 ~i~v~~~~i~~~d~~~~~g~~~~---~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~--------------------- 56 (288)
T smart00829 1 EVEVRAAGLNFRDVLIALGLLPG---EAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP--------------------- 56 (288)
T ss_pred CeeEEEEecCHHHHHHhcCCCCC---CCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC---------------------
Confidence 38999999999999999887642 468999999999999999999999999998631
Q ss_pred cccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCcc
Q psy7798 211 TTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFE 259 (261)
Q Consensus 211 ~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~ 259 (261)
|++..+..........+|+++++++++++++.+.|||+++.+.+.++
T Consensus 57 --g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 103 (288)
T smart00829 57 --GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLR 103 (288)
T ss_pred --CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCC
Confidence 33444444444678899999999999999999999999997766654
No 124
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.93 E-value=2.7e-09 Score=92.63 Aligned_cols=84 Identities=23% Similarity=0.177 Sum_probs=66.8
Q ss_pred CCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccc
Q psy7798 149 GLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMG 228 (261)
Q Consensus 149 g~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 228 (261)
|.+| ..+|.++|+|++|+|+++|+++++|++||+|+++. .+.++..+....+..
T Consensus 14 ~~~~-~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~-------------------------~~~~~~~v~~~~~~~ 67 (277)
T cd08255 14 GTEK-LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG-------------------------PHAERVVVPANLLVP 67 (277)
T ss_pred cCcc-CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC-------------------------CcceEEEcCHHHeeE
Confidence 4444 34789999999999999999999999999998853 133444444467788
Q ss_pred cCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 229 YSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 229 ~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
+|+++++++++.+ ..++|||+++. .+++++
T Consensus 68 ip~~l~~~~aa~~-~~~~ta~~~~~-~~~~~~ 97 (277)
T cd08255 68 LPDGLPPERAALT-ALAATALNGVR-DAEPRL 97 (277)
T ss_pred CcCCCCHHHhHHH-HHHHHHHHHHH-hcCCCC
Confidence 9999999999998 88999999984 677653
No 125
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=88.52 Aligned_cols=122 Identities=13% Similarity=0.042 Sum_probs=84.3
Q ss_pred CCcEEEEeeCCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCCcccccceEEEEEEeC--CCCCCCCCCCEEEEeecc
Q psy7798 113 KPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVG--EGVTSVAPGDHVIPLYIP 190 (261)
Q Consensus 113 ~~l~~~~~~~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p~~lG~E~~G~V~~vG--~~v~~~~vGDrV~~~~~~ 190 (261)
+++++++.+.|.|++||||||..+.++++ .....+...+....|..+|-..+|-++... +...+|++||.|.+..
T Consensus 25 d~F~lee~~vp~p~~GqvLl~~~ylS~DP-ymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~-- 101 (340)
T COG2130 25 DDFRLEEVDVPEPGEGQVLLRTLYLSLDP-YMRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS-- 101 (340)
T ss_pred CCceeEeccCCCCCcCceEEEEEEeccCH-HHeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc--
Confidence 34889999999999999999999999999 344344444444567888888877655543 5678899999998854
Q ss_pred CCCCCcccccCccccccccccccceeeeeeeecccccccCCCCC--hhhhccccchHHHHHHHHhcccCccc
Q psy7798 191 QCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGS--LERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s--~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
|+..+.+.......++.++.. ....-.+.....|||++|.++++.|.
T Consensus 102 -----------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~ 150 (340)
T COG2130 102 -----------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKA 150 (340)
T ss_pred -----------------------cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCC
Confidence 222333333343344442221 12234567788999999999998874
No 126
>KOG1202|consensus
Probab=98.85 E-value=2.8e-09 Score=105.08 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=90.2
Q ss_pred CCcEEEEeeCC---CCCCCeEEEEEEEEEcChhhHHHHcCCCCCCCCC-------cccccceEEEEEEeCCCCCCCCCCC
Q psy7798 113 KPLSLETIQVA---PPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFP-------CVLGHEGSGIVESVGEGVTSVAPGD 182 (261)
Q Consensus 113 ~~l~~~~~~~p---~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~~~p-------~~lG~E~~G~V~~vG~~v~~~~vGD 182 (261)
..|+|.+.+.. +..++.=+..|-++.|||+|++.+.|.++....| ..+|.|++|+- +-|.
T Consensus 1427 sSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~Gr 1496 (2376)
T KOG1202|consen 1427 SSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGR 1496 (2376)
T ss_pred cceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCc
Confidence 34788777654 3466777899999999999999999987654333 57899999853 4588
Q ss_pred EEEEeeccCCCCCcccccCccccccccccccceeeeeeeecccccccCCCCChhhhccccchHHHHHHHHhcccCccc
Q psy7798 183 HVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 183 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~eaA~lp~~~~TA~~aL~~~a~L~~ 260 (261)
||+++.+. .+.++..+...+..-.+|.+.+++||+++|++|.||||||+.++++++
T Consensus 1497 RvM~mvpA----------------------ksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkk 1552 (2376)
T KOG1202|consen 1497 RVMGMVPA----------------------KSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKK 1552 (2376)
T ss_pred EEEEeeeh----------------------hhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccC
Confidence 99987631 234444444456667788889999999999999999999999999876
No 127
>KOG1196|consensus
Probab=96.40 E-value=0.043 Score=48.15 Aligned_cols=111 Identities=16% Similarity=0.014 Sum_probs=66.4
Q ss_pred CCCCCCCeEEEEEEEEEcChhhHHHHcCCCCCC--CCCccccc----ceEEEEEEeCCCCCCCCCCCEEEEeeccCCCCC
Q psy7798 122 VAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEG--KFPCVLGH----EGSGIVESVGEGVTSVAPGDHVIPLYIPQCNEC 195 (261)
Q Consensus 122 ~p~~~~~eVlVkV~a~gln~~Dv~~~~g~~~~~--~~p~~lG~----E~~G~V~~vG~~v~~~~vGDrV~~~~~~~~~~~ 195 (261)
..++++++|+||..+-+..|.- ..+++..... ..|..+|- .++|+|++. +-+++++||.|.+.. ++.
T Consensus 32 ~~~~~s~~vlvknlYLS~DPym-R~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~~--gWe-- 104 (343)
T KOG1196|consen 32 RVPLGSGEVLVKNLYLSCDPYM-RIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGIV--GWE-- 104 (343)
T ss_pred cCCCCCccEEeEeeeecCCHHH-HhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEec--cce--
Confidence 4567899999999999987753 3344432211 12233332 678889884 568899999998764 121
Q ss_pred cccccCccccccccccccceeeeeeeecc--cccccC--CCCChhhh-ccccchHHHHHHHHhcccCccc
Q psy7798 196 KFCKSSKTNLCTKIRTTQLFLTSNVTISD--FNMGYS--MTGSLERG-SKRDNSFQTTHFAVIKRRDFEK 260 (261)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~--~~~s~~ea-A~lp~~~~TA~~aL~~~a~L~~ 260 (261)
++.+..+. ..++++ .++.+.-+ ..+....+|||..+++++..++
T Consensus 105 ---------------------eysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~ 153 (343)
T KOG1196|consen 105 ---------------------EYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKK 153 (343)
T ss_pred ---------------------EEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCC
Confidence 11111111 122222 33333332 2466788999999998877654
No 128
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=86.10 E-value=0.89 Score=33.45 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.2
Q ss_pred eEEEEEEeCCCCC----CCCCCCEEEE
Q psy7798 164 GSGIVESVGEGVT----SVAPGDHVIP 186 (261)
Q Consensus 164 ~~G~V~~vG~~v~----~~~vGDrV~~ 186 (261)
..|+|++||++.. .+|+||+|+.
T Consensus 45 ~~g~VvAVG~G~~~~~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 45 NEGTVVAVAAATKDWTPTVKVGDTVLL 71 (100)
T ss_pred ceeEEEEECCCCccccceecCCCEEEE
Confidence 3699999999854 4999999985
No 129
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=86.02 E-value=0.88 Score=33.02 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCCeEEEEEEEEEcChhhHHHHcCCC-CCCCCCcccccceEEEEEEeCCCC---------CCCCCCCEEEEe
Q psy7798 125 PKAGEVRIKIVSTAICHTDAYTLDGLD-SEGKFPCVLGHEGSGIVESVGEGV---------TSVAPGDHVIPL 187 (261)
Q Consensus 125 ~~~~eVlVkV~a~gln~~Dv~~~~g~~-~~~~~p~~lG~E~~G~V~~vG~~v---------~~~~vGDrV~~~ 187 (261)
|-.|-|+|+.... +-.+..|.+ |.... .--..|+|++||++. ..+++||+|+..
T Consensus 4 Pl~DrVLV~~~~~-----e~~T~~GI~Lp~~~~----~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T cd00320 4 PLGDRVLVKRIEA-----EEKTKGGIILPDSAK----EKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFP 67 (93)
T ss_pred ecCCEEEEEEccc-----cceecceEEeCCCcC----CCceEEEEEEECCCeECCCCCCccccccCCCEEEEC
Confidence 3346788886642 222333432 22110 223689999999973 359999999753
No 130
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=84.37 E-value=0.97 Score=32.95 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=19.7
Q ss_pred eEEEEEEeCCCCC---------CCCCCCEEEEe
Q psy7798 164 GSGIVESVGEGVT---------SVAPGDHVIPL 187 (261)
Q Consensus 164 ~~G~V~~vG~~v~---------~~~vGDrV~~~ 187 (261)
..|+|++||++.. .+++||+|+..
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 5899999999652 49999999853
No 131
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=80.36 E-value=2.1 Score=30.92 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=19.2
Q ss_pred eEEEEEEeCCCCC----CCCCCCEEEEe
Q psy7798 164 GSGIVESVGEGVT----SVAPGDHVIPL 187 (261)
Q Consensus 164 ~~G~V~~vG~~v~----~~~vGDrV~~~ 187 (261)
..|+|++||++.. .+++||+|+..
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~ 63 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIFS 63 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEEc
Confidence 5799999997642 49999999753
No 132
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=78.85 E-value=2.2 Score=31.04 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=17.3
Q ss_pred EEEEEEeCCCCC---------CCCCCCEEEE
Q psy7798 165 SGIVESVGEGVT---------SVAPGDHVIP 186 (261)
Q Consensus 165 ~G~V~~vG~~v~---------~~~vGDrV~~ 186 (261)
-|+|++||++-. .+++||+|+.
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf 67 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLF 67 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEE
Confidence 589999997431 3999999975
No 133
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=78.55 E-value=4.8 Score=22.78 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhhccCCCChHHHHhHHHHH
Q psy7798 4 PEEQAEQYYENYKSKSYKDEEFEQFEKKV 32 (261)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (261)
|.++-+..-+-|.+..+|++||+..++.+
T Consensus 1 ~~~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 1 IEDRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56788888899999999999999988543
No 134
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=76.24 E-value=3.4 Score=21.81 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=14.2
Q ss_pred eeEEEEecCCCCcEEEEeeCCCC
Q psy7798 103 CKAAVAWEPKKPLSLETIQVAPP 125 (261)
Q Consensus 103 ~~~~~~~~~g~~l~~~~~~~p~~ 125 (261)
|+|+++.++++ +++++++.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 78999988877 88888887754
No 135
>KOG1641|consensus
Probab=75.58 E-value=5.4 Score=29.27 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=34.5
Q ss_pred CCCCeEEEEEEEEEcChhhHHHHcCCC-CCCCCCcccccceEEEEEEeCCCCC---------CCCCCCEEEEe
Q psy7798 125 PKAGEVRIKIVSTAICHTDAYTLDGLD-SEGKFPCVLGHEGSGIVESVGEGVT---------SVAPGDHVIPL 187 (261)
Q Consensus 125 ~~~~eVlVkV~a~gln~~Dv~~~~g~~-~~~~~p~~lG~E~~G~V~~vG~~v~---------~~~vGDrV~~~ 187 (261)
|.-|-|+|+...+ ...+..|.+ |. ...|-...|+|+++|++-. .+++||||...
T Consensus 13 Pl~DRVLVqr~~a-----~~KT~gGilLPE----ks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlp 76 (104)
T KOG1641|consen 13 PLLDRVLVQRIEA-----PTKTAGGILLPE----KSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLP 76 (104)
T ss_pred cccceeeeeeeec-----cccccceeEecc----ccccccceEEEEEEcCccccCCCCCcCccccCCCEEEee
Confidence 4557788886654 233344432 32 2235556799999998743 48999999753
No 136
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=74.23 E-value=3.1 Score=30.05 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=18.4
Q ss_pred ceEEEEEEeCC--------CC-CCCCCCCEEEEee
Q psy7798 163 EGSGIVESVGE--------GV-TSVAPGDHVIPLY 188 (261)
Q Consensus 163 E~~G~V~~vG~--------~v-~~~~vGDrV~~~~ 188 (261)
...|+|++||+ .+ ..+++||+|....
T Consensus 34 ~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T PF00166_consen 34 PNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPK 68 (93)
T ss_dssp EEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEET
T ss_pred cceeEEEEcCCccccCCCcEeeeeeeeccEEeccc
Confidence 46899999999 22 3699999997643
No 137
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=48.17 E-value=19 Score=27.68 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHhhccCC
Q psy7798 1 MALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (261)
+.|+.|+|+++|+.|+.|.
T Consensus 37 ~~ls~~~a~~~y~~~~~k~ 55 (130)
T cd04413 37 LQLTEELAEEHYAEHKGKP 55 (130)
T ss_pred ccCCHHHHHHHhhhhcCCc
Confidence 3588999999999998864
No 138
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=47.13 E-value=12 Score=20.85 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=11.5
Q ss_pred HHHHHhhccCCCCh
Q psy7798 9 EQYYENYKSKSYKD 22 (261)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (261)
-|+++|||.|+.+.
T Consensus 5 PQi~~~~~~ks~~g 18 (32)
T smart00679 5 PQIIKNYRRKSTEG 18 (32)
T ss_pred hHHHHHHHcCCcCc
Confidence 48999999998764
No 139
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=44.34 E-value=16 Score=27.36 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=27.3
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEEeec
Q psy7798 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIPLYI 189 (261)
Q Consensus 158 ~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~ 189 (261)
.+.|-.++|+|.==|......++||+|+.+..
T Consensus 58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~sy 89 (111)
T cd06919 58 VIPGERGSGVICLNGAAARLGQPGDRVIIMAY 89 (111)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 46788899999988988888999999987653
No 140
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=43.87 E-value=26 Score=26.99 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.3
Q ss_pred CCCcHHHHHHHHHhhccCC
Q psy7798 1 MALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (261)
+-|..++|+++|+.|+.|.
T Consensus 35 ~~lt~~~a~~~y~~~~gk~ 53 (131)
T cd04415 35 TKLSRKEAQDFYAEHQSKP 53 (131)
T ss_pred ecCCHHHHHHHHHHhCCCC
Confidence 3578999999999999874
No 141
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=43.09 E-value=25 Score=27.18 Aligned_cols=18 Identities=50% Similarity=0.728 Sum_probs=16.0
Q ss_pred CCcHHHHHHHHHhhccCC
Q psy7798 2 ALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (261)
.|..++|+++|+.|+.|.
T Consensus 40 ~lt~~~a~~~Y~~~~~k~ 57 (134)
T PRK14540 40 KLTREMAEEYYEEHKGKE 57 (134)
T ss_pred cCCHHHHHHHHHHhCCCc
Confidence 578999999999999874
No 142
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=42.75 E-value=25 Score=27.04 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHhhccCC
Q psy7798 1 MALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (261)
+.|.+++|+++|+.|+.|.
T Consensus 37 ~~lt~~~a~~~Y~~~~~~~ 55 (133)
T cd00595 37 LHLTEEQAEEFYVEHKGRP 55 (133)
T ss_pred ecCCHHHHHHHHHHhcCCc
Confidence 3578999999999999764
No 143
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=41.89 E-value=30 Score=26.79 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.2
Q ss_pred CCCcHHHHHHHHHhhccCCC
Q psy7798 1 MALPEEQAEQYYENYKSKSY 20 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (261)
+.|.+++|+++|+.|+.|..
T Consensus 38 ~~lt~~~a~~~Y~~~~~~~f 57 (135)
T cd04414 38 LRWTTEDAERFYAEHKGKFF 57 (135)
T ss_pred ecCCHHHHHHHHHHhCCCCc
Confidence 35889999999999999864
No 144
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=41.06 E-value=29 Score=27.11 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=16.7
Q ss_pred CCcHHHHHHHHHhhccCCC
Q psy7798 2 ALPEEQAEQYYENYKSKSY 20 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (261)
.|+.|+|+++|+.++.|..
T Consensus 39 ~lt~e~a~~~Y~~~~~k~f 57 (140)
T PRK14541 39 RLTKETAGEFYAVHRERPF 57 (140)
T ss_pred cCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999764
No 145
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=40.92 E-value=32 Score=26.83 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHHhhccCCC
Q psy7798 2 ALPEEQAEQYYENYKSKSY 20 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (261)
.|.+++|+++|+.++.|..
T Consensus 41 ~lt~~~a~~~Y~~~~~k~f 59 (139)
T PRK14545 41 QLTVADAETFYAVHAERPF 59 (139)
T ss_pred cCCHHHHHHHHHHhCCCCc
Confidence 5789999999999999754
No 146
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=40.07 E-value=31 Score=26.55 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHhhccCC
Q psy7798 1 MALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (261)
+-|.+++|+++|+.|+.|.
T Consensus 35 ~~lt~~~a~~~y~~~~~~~ 53 (132)
T cd04418 35 LQLSPEQCSDFYAEHYGKM 53 (132)
T ss_pred ecCCHHHHHHHHHHhCCCc
Confidence 3578999999999999985
No 147
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=39.89 E-value=32 Score=26.77 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=16.2
Q ss_pred CCcHHHHHHHHHhhccCCC
Q psy7798 2 ALPEEQAEQYYENYKSKSY 20 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (261)
-|.+++|+++|+.|+.|..
T Consensus 39 ~lt~~~a~~~Y~~~~~k~f 57 (137)
T PRK14542 39 KLSLEDAKQFYKVHSARPF 57 (137)
T ss_pred cCCHHHHHHHHHHhcCCcc
Confidence 4789999999999998753
No 148
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=39.19 E-value=14 Score=27.91 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=23.7
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEEee
Q psy7798 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIPLY 188 (261)
Q Consensus 158 ~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~ 188 (261)
.+.|-.++|+|.-=|......++||+|+.+.
T Consensus 59 vI~g~~GSg~I~lNGaAArl~~~GD~vII~s 89 (116)
T PF02261_consen 59 VIPGERGSGVICLNGAAARLVQVGDRVIIMS 89 (116)
T ss_dssp EEEESTTTT-EEEEGGGGGCS-TT-EEEEEE
T ss_pred EEEccCCCcEEEECCHHHhccCCCCEEEEEE
Confidence 4678888999999899888999999998765
No 149
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=38.33 E-value=22 Score=27.20 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=27.3
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEEeec
Q psy7798 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIPLYI 189 (261)
Q Consensus 158 ~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~ 189 (261)
.+.|-.++|+|.==|......++||+|+.+..
T Consensus 59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~sy 90 (126)
T TIGR00223 59 AIAGKRGSRIICVNGAAARCVSVGDIVIIASY 90 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 46788899999988988888999999987653
No 150
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=37.75 E-value=25 Score=26.89 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=27.1
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEEeec
Q psy7798 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIPLYI 189 (261)
Q Consensus 158 ~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~ 189 (261)
.+.|-.++|+|.==|......++||+|+.+..
T Consensus 59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay 90 (126)
T PRK05449 59 VIAGERGSGVICLNGAAARLVQVGDLVIIAAY 90 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 46788889999988988888999999987653
No 151
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=37.14 E-value=37 Score=26.01 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=15.8
Q ss_pred CCcHHHHHHHHHhhccCC
Q psy7798 2 ALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (261)
.|++++|+++|+.++.|.
T Consensus 37 ~lt~~~a~~fY~~~~~~~ 54 (132)
T cd04416 37 VLTEEQAREFYKEHEEED 54 (132)
T ss_pred cCCHHHHHHHHHHhcCCc
Confidence 578999999999998873
No 152
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=35.15 E-value=40 Score=25.96 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.3
Q ss_pred CCCcHHHHHHHHHhhccCC
Q psy7798 1 MALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (261)
+.|.+++|+++|+.|+.|.
T Consensus 38 ~~ls~~~a~~fy~~~~~k~ 56 (134)
T PRK00668 38 MQLSRELAEGHYAEHKEKP 56 (134)
T ss_pred ecCCHHHHHHHHHHhcCCc
Confidence 3578999999999999864
No 153
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=31.68 E-value=49 Score=26.07 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHHhhccCC
Q psy7798 2 ALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (261)
.|..++|+++|+.++.|.
T Consensus 40 ~lt~~~a~~fY~~~~gk~ 57 (149)
T PTZ00093 40 QPTPEIAEEHYKEHKGKP 57 (149)
T ss_pred cCCHHHHHHHHHHhcCCc
Confidence 578999999999999864
No 154
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=30.13 E-value=37 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=14.7
Q ss_pred EEEEEEeCCCCCCCCCCCEEEEeeccCC
Q psy7798 165 SGIVESVGEGVTSVAPGDHVIPLYIPQC 192 (261)
Q Consensus 165 ~G~V~~vG~~v~~~~vGDrV~~~~~~~~ 192 (261)
-|+|.-- .+...+++||+|...+...|
T Consensus 55 Hg~l~~~-~~~~~~~vGd~v~iiP~H~C 81 (94)
T PF14031_consen 55 HGILRLP-DGADRLKVGDKVEIIPNHCC 81 (94)
T ss_dssp -EEEE-S-TTGCGT-TT-EEEEEESSHH
T ss_pred eeEEECC-CCCCCCCCCCEEEEECCccc
Confidence 4555433 33456999999998875433
No 155
>PRK09458 pspB phage shock protein B; Provisional
Probab=30.12 E-value=72 Score=22.12 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=23.8
Q ss_pred cCCCChHHHHhHHHHHHhHHHHhhhhhcc
Q psy7798 17 SKSYKDEEFEQFEKKVDNISRLIANFSNK 45 (261)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (261)
++++|++|...++.+...+.+|-.++.++
T Consensus 33 ~~~Ls~~d~~~L~~L~~~A~rm~~RI~tL 61 (75)
T PRK09458 33 SQGLSQEEQQRLAQLTEKAERMRERIQAL 61 (75)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999998887766443
No 156
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=27.98 E-value=54 Score=25.11 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHhhccCC
Q psy7798 1 MALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (261)
+.|.+++|+++|+.++++.
T Consensus 37 ~~lt~~~a~~~y~~~~~~~ 55 (135)
T smart00562 37 LQLTEELAEEFYAEHKGKP 55 (135)
T ss_pred ecCCHHHHHHHHHHhcCCc
Confidence 3578999999999988754
No 157
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=27.38 E-value=77 Score=20.98 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHhhccCCCChHHHHhHHHHHH
Q psy7798 2 ALPEEQAEQYYENYKSKSYKDEEFEQFEKKVD 33 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (261)
.|..+|+++.++.+-+..+++.++-+|-..+.
T Consensus 14 ~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~ 45 (66)
T PF02885_consen 14 DLSREEAKAAFDAILDGEVSDAQIAAFLMALR 45 (66)
T ss_dssp ---HHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46788999999999999999888888765444
No 158
>PLN02931 nucleoside diphosphate kinase family protein
Probab=27.33 E-value=65 Score=26.29 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.3
Q ss_pred CCcHHHHHHHHHhhccCCC
Q psy7798 2 ALPEEQAEQYYENYKSKSY 20 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (261)
.|.+++|+++|+.|+.|..
T Consensus 67 ~Lt~e~a~~fY~~h~gk~f 85 (177)
T PLN02931 67 QLDEDRASLFYAEHSSRSF 85 (177)
T ss_pred cCCHHHHHHHHHHhCCCcc
Confidence 5789999999999998753
No 159
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=27.14 E-value=36 Score=26.07 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=15.7
Q ss_pred CCcHHHHHHHHHhhccCC
Q psy7798 2 ALPEEQAEQYYENYKSKS 19 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (261)
.|.+++|+++|+.++.+.
T Consensus 38 ~lt~e~a~~~y~~~~~~~ 55 (135)
T PF00334_consen 38 QLTREEAREFYEEHKGKP 55 (135)
T ss_dssp EETHHHHHHHTGGGTTST
T ss_pred hhhHHHHheEEEeecCCc
Confidence 478999999999998866
No 160
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]
Probab=26.18 E-value=29 Score=29.01 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.6
Q ss_pred HHHHHhhccCCCChH
Q psy7798 9 EQYYENYKSKSYKDE 23 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (261)
+.||||||+.+|.+.
T Consensus 8 ~ry~e~~k~~sme~k 22 (269)
T COG5176 8 SRYFENRKGSSMEEK 22 (269)
T ss_pred hHHhhccccCchhcc
Confidence 579999999997664
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=26.05 E-value=61 Score=22.12 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.4
Q ss_pred HHHHHHHHhhccCCCChHHHHhHH
Q psy7798 6 EQAEQYYENYKSKSYKDEEFEQFE 29 (261)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (261)
++...+|+.||.+-++-+||-..=
T Consensus 28 ~~l~~~Y~~~k~~kIsR~~fvr~l 51 (70)
T PF12174_consen 28 DLLQKHYEEFKKKKISREEFVRKL 51 (70)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH
Confidence 456679999999999999986543
No 162
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=25.70 E-value=1.2e+02 Score=21.57 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHhhccCCCChHHHHhHHHHHHh
Q psy7798 2 ALPEEQAEQYYENYKSKSYKDEEFEQFEKKVDN 34 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (261)
.+++.+.+++++.+|..+++++.+..++.....
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~ 36 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLKVLEAAAKT 36 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhc
Confidence 357788999999999999999999998866553
No 163
>PRK10878 hypothetical protein; Provisional
Probab=25.33 E-value=1.2e+02 Score=20.85 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=28.8
Q ss_pred CCCChHHHHhHHHHHHhHHHHhhhhhccccchhHHhHHHHHHHHH
Q psy7798 18 KSYKDEEFEQFEKKVDNISRLIANFSNKDKNIAAAAMREAKLLLE 62 (261)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~l~~ 62 (261)
.+++++|.+.|.++++.--.-++.+....-.+.++..+.+...++
T Consensus 17 ~~l~~~e~~~Fe~LL~~~D~dL~~W~~g~~~p~d~~l~~iV~~Ir 61 (72)
T PRK10878 17 DSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELERMVRLIQ 61 (72)
T ss_pred hhCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 369999999999999865555555555555554543333333333
No 164
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=25.32 E-value=1.6e+02 Score=21.44 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=25.5
Q ss_pred HHHHhhccCCCChHHHHhHHHHHHhHHHHhhhhhccccch
Q psy7798 10 QYYENYKSKSYKDEEFEQFEKKVDNISRLIANFSNKDKNI 49 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~ 49 (261)
+|++.|- .++||+|.+.|..+++.--.-++.+....-.+
T Consensus 35 ~Fae~~~-~~lsd~el~~f~~LLe~~D~dL~~Wi~g~~~~ 73 (94)
T COG2938 35 PFAEKEF-DSLSDEELDEFERLLECEDNDLFNWIMGHGEP 73 (94)
T ss_pred HHHHHHH-hhCCHHHHHHHHHHHcCCcHHHHHHHhCCCCC
Confidence 4555543 46899999999999986655454444444333
No 165
>PF04193 PQ-loop: PQ loop repeat
Probab=24.67 E-value=37 Score=21.90 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=12.6
Q ss_pred HHHHHhhccCCCChHHH
Q psy7798 9 EQYYENYKSKSYKDEEF 25 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (261)
-|.|+|||.|+-..=-+
T Consensus 19 PQi~~~~k~ks~~glS~ 35 (61)
T PF04193_consen 19 PQIIKNYKRKSTGGLSL 35 (61)
T ss_pred hHHHHHHHccccccccH
Confidence 48999999998744333
No 166
>PLN02619 nucleoside-diphosphate kinase
Probab=24.55 E-value=79 Score=27.08 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=16.9
Q ss_pred CCCcHHHHHHHHHhhccCCC
Q psy7798 1 MALPEEQAEQYYENYKSKSY 20 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (261)
+.|++|+|+++|+.++.|..
T Consensus 125 v~Lt~e~AeefY~ehkgKpF 144 (238)
T PLN02619 125 VVPSKEFAQKHYHDLKERPF 144 (238)
T ss_pred ccCCHHHHHHHHHHhcCCCc
Confidence 35789999999999999753
No 167
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=24.38 E-value=1e+02 Score=20.77 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=25.8
Q ss_pred CCcHHHHHHHHHhhccCCCChHHHHhHHHHHHh
Q psy7798 2 ALPEEQAEQYYENYKSKSYKDEEFEQFEKKVDN 34 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (261)
.+|+++.++.+..|..++++.+++..+.+.+.+
T Consensus 13 ~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~ 45 (76)
T PF08479_consen 13 LLPEEELQAILAPYIGRCLTLADLQQLADALTN 45 (76)
T ss_dssp SSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHH
Confidence 367788899999999999999999887755443
No 168
>PF14071 YlbD_coat: Putative coat protein
Probab=24.24 E-value=1.5e+02 Score=22.63 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=28.7
Q ss_pred HHHHHhhccCCCChHHHHhHH----------------HHHHhHHHHhhhhhccccch
Q psy7798 9 EQYYENYKSKSYKDEEFEQFE----------------KKVDNISRLIANFSNKDKNI 49 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~d~d~ 49 (261)
.++||++---+-+++-|+.++ ...+-+..|+..+.-+|++.
T Consensus 25 Q~~YEeW~LlGEdD~~W~~Yk~~~~~~~~~~~~~~~~~~~d~~~ql~~~vKkmD~nq 81 (124)
T PF14071_consen 25 QQFYEEWYLLGEDDPIWDPYKEDSEPSNSAEKKSETEKKNDWMSQLLSMVKKMDVNQ 81 (124)
T ss_pred HHHHHHHHHhCCCcchHHHhhccccccccccccccccchhHHHHHHHHHHHHCCHHH
Confidence 578999888888888888888 34444455555666666654
No 169
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=24.14 E-value=79 Score=24.31 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHHhhccC
Q psy7798 2 ALPEEQAEQYYENYKSK 18 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (261)
.|..++|+++|+.++.|
T Consensus 38 ~lt~~~a~~~y~~~~~~ 54 (134)
T cd04412 38 NLTRANAEEFLEVYKGV 54 (134)
T ss_pred cCCHHHHHHHHHHHcCc
Confidence 57899999999999886
No 170
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.78 E-value=1.1e+02 Score=21.25 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=24.4
Q ss_pred ccCCCChHHHHhHHHHHHhHHHHhhhhhcc
Q psy7798 16 KSKSYKDEEFEQFEKKVDNISRLIANFSNK 45 (261)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (261)
.+++++++|.+.++.+...+..|--+..++
T Consensus 32 ~~~gLs~~d~~~L~~L~~~a~rm~eRI~tL 61 (75)
T PF06667_consen 32 SSQGLSEEDEQRLQELYEQAERMEERIETL 61 (75)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999888887666443
No 171
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=22.99 E-value=96 Score=28.01 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=20.0
Q ss_pred HHHHHHhhccC-CCChHHHHhHHHHHH
Q psy7798 8 AEQYYENYKSK-SYKDEEFEQFEKKVD 33 (261)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 33 (261)
.|+|-|.|+.| +||++||+.|-....
T Consensus 175 le~Y~~yy~~k~~~s~~e~~~~i~~r~ 201 (377)
T COG3454 175 LEKYREYYQGKRGLSDEEFAEFIEERQ 201 (377)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 46777777655 899999999985554
No 172
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=22.73 E-value=1.4e+02 Score=19.20 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhccCCCChHHHHhHH
Q psy7798 5 EEQAEQYYENYKSKSYKDEEFEQFE 29 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (261)
+.|-..||+-++..+++|++-+.+=
T Consensus 7 ~~QQnAFY~vl~~~nLteeQrn~yI 31 (54)
T PF02216_consen 7 VAQQNAFYEVLHMPNLTEEQRNGYI 31 (54)
T ss_dssp HHHHHHHHHHHCSTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHhHH
Confidence 4677789999999999999988664
No 173
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=22.04 E-value=1.1e+02 Score=25.52 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHhhccCCCChHHHHhHHHHHHh
Q psy7798 3 LPEEQAEQYYENYKSKSYKDEEFEQFEKKVDN 34 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (261)
-||++.++..+-|+.|++++++-+.+-+.+..
T Consensus 77 ~pe~e~~el~~iy~~~Gl~~~~a~~i~~~l~~ 108 (213)
T PF01988_consen 77 NPEEEKEELVEIYRAKGLSEEDAEEIAEELSK 108 (213)
T ss_pred ChHhHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 47888888888999999999999888766543
No 174
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=20.54 E-value=70 Score=24.38 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=25.3
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEEeec
Q psy7798 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIPLYI 189 (261)
Q Consensus 158 ~~lG~E~~G~V~~vG~~v~~~~vGDrV~~~~~ 189 (261)
.+.|-.++|+|.-=|....-.++||+|+.+..
T Consensus 58 vI~g~rGSg~I~lNGAAArl~~~GD~VII~sy 89 (126)
T COG0853 58 VIAGERGSGVICLNGAAARLVQVGDLVIIMSY 89 (126)
T ss_pred EEEccCCCcEEEechHHHhhCCCCCEEEEEEc
Confidence 45677788988877777777999999988663
Done!