RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7798
(261 letters)
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 242 bits (620), Expect = 4e-79
Identities = 85/115 (73%), Positives = 96/115 (83%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+VI+CKAAVAWE KPLS+E I+VAPPKA EVRIKI++TA+CHTDAYTL G D EG FP
Sbjct: 3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
+LGH G+GIVESVGEGVT + GD VIPLYIPQC ECKFC + KTNLC KIR TQ
Sbjct: 63 ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQ 117
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 237 bits (608), Expect = 2e-77
Identities = 63/126 (50%), Positives = 82/126 (65%), Gaps = 1/126 (0%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+VI+CKAA+AW+ PL +E I+V+PPKA EVRI++++T +C TD D + FP
Sbjct: 5 KVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDP-KKKALFPV 63
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTS 218
VLGHE +GIVESVG GVT+ PGD VIP + PQC CK C S TNLC K+R +
Sbjct: 64 VLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTID 123
Query: 219 NVTISD 224
+ D
Sbjct: 124 QELMED 129
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 237 bits (608), Expect = 2e-77
Identities = 68/120 (56%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
Query: 94 MISLPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE 153
M + + I CKAAVAWEP KPLSLETI VAPPKA EVRIKI+++ IC +D+ L +
Sbjct: 1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60
Query: 154 GKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
FP +LGHE G+VES+G GVT V PGD VIPL++PQC C+ CKSS +N C K
Sbjct: 61 K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 232 bits (593), Expect = 4e-75
Identities = 67/115 (58%), Positives = 82/115 (71%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+VI+CKAAVAWE KPL +E I+V P A E+RIKI++T +CHTD Y L + FP
Sbjct: 5 KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPV 64
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
VLGHEG+GIVESVG GVT PG+ VIPL+I QC EC+FC+S KTN C K +
Sbjct: 65 VLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 230 bits (588), Expect = 2e-74
Identities = 62/115 (53%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+VI+CKAAV WE KKP S+E ++VAPPKA EVRIK+V+T IC +D + + G P
Sbjct: 5 KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPV 63
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
+ GHE +GIVES+GEGVT+V PGD VIPL+ PQC +C+ CK + N C K +
Sbjct: 64 IAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSM 118
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 220 bits (564), Expect = 7e-71
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
++ + AAV L+ +++ P+ EV +K+V+T +CHTD D P
Sbjct: 3 ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPA 61
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQL 214
VLGHEGSGI+E++G VT + GDHV+ Y C +C C + C++
Sbjct: 62 VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNF 116
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 209 bits (535), Expect = 2e-66
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVL 160
++ A V + +PL + +++ G + ++I+S +C +D + G D P +L
Sbjct: 16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 161 GHEGSGIVESVGEGVTS-----VAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
GHEG+G V V + PGD ++ C EC +CK SK R
Sbjct: 76 GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY 133
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 135 bits (343), Expect = 3e-38
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL--DSEGKFPCVLG 161
KA E + I P GE+ +K+ + +CH+D + +D P LG
Sbjct: 2 KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61
Query: 162 HEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT 212
HEG G V +GEGVT GD V C C C + N CT+
Sbjct: 62 HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADL 112
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 126 bits (318), Expect = 2e-34
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 104 KAAVAWEPKKPLSLETIQV-APPKAGEVRIKIVSTAICHTDAYTLDG---LDSEGKFPCV 159
KAA E KPL +E + +V ++I +CHTD + + G + K P
Sbjct: 17 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76
Query: 160 LGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT 212
LGHE G +E V EGV + GD VI C C++ + C +
Sbjct: 77 LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP 129
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 124 bits (314), Expect = 6e-34
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE--GKFPCVLG 161
KAA+ + +PLS+E + + P+ EV I+I +C TD G++++ + P +LG
Sbjct: 5 KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64
Query: 162 HEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT 212
HE +G + VGE + V GD+V+ C++C+ K N+C
Sbjct: 65 HENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIP 114
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 122 bits (308), Expect = 4e-33
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDG--------LDSEGK 155
+A E KPLSL+ I V PK +V IK+ + +CH+D + G D K
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 156 FPCVLGHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIR 210
P LGHE +G +E VG+ V + GD V + + C +C+ + +LC R
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQG-EGNCYYCRIGEEHLCDSPR 116
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 119 bits (300), Expect = 5e-32
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDG-LDSEGKFPCVLGH 162
KAAV PL+++ + V P G+V++KI ++ +CHTD + DG + P + GH
Sbjct: 4 KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 163 EGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
EG G V +VG GV+ V GD V +P C C+ C LC K + T
Sbjct: 64 EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNT 114
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 116 bits (294), Expect = 4e-31
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDG-LDSEGKFPCVLGH 162
KAAV + K+PL ++ ++ GEV ++I + +CHTD + G + K P + GH
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 163 EGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
EG GIVE VG GVT + GD V IP C C +C S + LC +
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA 112
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 112 bits (282), Expect = 2e-29
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTD--AYTLDGL-DSEGKFPCVL 160
+A P++ L+L V P GE+ +++ + +IC TD + D + P V
Sbjct: 2 RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 161 GHEGSGIVESVGEGVTSVAPGDHVI--PLYIPQCNECKFCKSSKTNLCTKIR 210
GHE SG+VE+VG GV GDHV + C+ C C++ ++C +
Sbjct: 62 GHEFSGVVEAVGPGVRRPQVGDHVSLESHIV--CHACPACRTGNYHVCLNTQ 111
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 111 bits (281), Expect = 3e-29
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 96 SLPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLD--SE 153
S+P+ K + +E L + I V PKA E+ I + + +CHTD + G D
Sbjct: 1 SIPE--TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHG-DWPLP 57
Query: 154 GKFPCVLGHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
K P V GHEG+G+V +GE V GD+ I C C++C+ + C +
Sbjct: 58 VKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS 117
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 110 bits (278), Expect = 1e-28
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTD--AYTLDGL-DSEGKFPCVL 160
A + +P L + V P GEV IK+++T+IC TD Y + S K P ++
Sbjct: 6 VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65
Query: 161 GHEGSGIVESVGEGVTSVAPGDHVI--PLYIPQCNECKFCKSSKTNLCTKIR 210
GHE +G V +G GV + GD+V + C +C C+ + ++C +
Sbjct: 66 GHEVAGEVVEIGPGVEGIEVGDYVSVETHIV--CGKCYACRRGQYHVCQNTK 115
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 110 bits (277), Expect = 1e-28
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL---DSEGKFPCVL 160
KA + + P++GE ++ + +C TD + G EG+ VL
Sbjct: 2 KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61
Query: 161 GHEGSGIVESVGEGVTSVAPGDHV--IPLYIPQCNECKFCKSSKTNLCTKIR 210
GHE G+V V T + GD V P ++ + + ++
Sbjct: 62 GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGM 111
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 110 bits (277), Expect = 2e-28
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHE 163
KA +S+ + + P ++ +K+ + IC TD + L G + P LGHE
Sbjct: 25 KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHG-EFPSTPPVTLGHE 82
Query: 164 GSGIVESVGEGVTSVAPGDHVI--PLYIPQCNECKFCKSSKTNLCTKIR 210
GIV G V +APG + P I C C C++ + NLC +R
Sbjct: 83 FCGIVVEAGSAVRDIAPGARITGDPN-IS-CGRCPQCQAGRVNLCRNLR 129
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 109 bits (274), Expect = 3e-28
Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDA-YTLDG--LDSEGKFPCVL 160
+AV + L LE + PK EV +++ IC +D Y G D K P V+
Sbjct: 6 LSAV-LYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64
Query: 161 GHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIR 210
GHE SG V VG+ V + GD V + +P C C+FCK K NLC +
Sbjct: 65 GHEASGTVVKVGKNVKHLKKGDRVAVEPGVP-CRRCQFCKEGKYNLCPDLT 114
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 106 bits (268), Expect = 3e-27
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 104 KAAVAWEPKKPLSLETIQV-APPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGH 162
K+ V + + + EVR+KI S+ +C +D + + +P LGH
Sbjct: 2 KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFK-NGAHYYPITLGH 59
Query: 163 EGSGIVESVGEGVTSVAPGDHVI--PLYIPQCNECKFCKSSKTNLCTKIR 210
E SG +++VG GV + PGD V PL +P C C C + C K
Sbjct: 60 EFSGYIDAVGSGVDDLHPGDAVACVPL-LP-CFTCPECLKGFYSQCAKYD 107
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 106 bits (267), Expect = 4e-27
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDA-YTLDGL--DSEGKFPCVL 160
+ V L LE + P EV +++ S IC +D Y G + K P VL
Sbjct: 9 LSLV-VHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67
Query: 161 GHEGSGIVESVGEGVTSVAPGDHV-----IPLYIPQCNECKFCKSSKTNLCTKIR 210
GHE SG VE VG V + PGD V P +FCK + NL I
Sbjct: 68 GHEASGTVEKVGSSVKHLKPGDRVAIEPGAP-----RENDEFCKMGRYNLSPSIF 117
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 105 bits (264), Expect = 9e-27
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 104 KAAVAWEPKKPLSLETIQV-APPKAGEVRIKIVSTAICHTDAYTLDGLDS-----EGKFP 157
KA + P + ++ + G+++I+ + IC D ++G + +GK
Sbjct: 2 KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIP-LYIPQCNECKFCKSSKTNLCTKIRTTQL 214
VLGHE G+VE G + GD V+P C C+ C + + C +
Sbjct: 62 LVLGHEAIGVVEESYHG---FSQGDLVMPVNRRG-CGICRNCLVGRPDFCETGEFGEA 115
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 104 bits (261), Expect = 3e-26
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 100 VIECKAAVAWEPKKPLSLETIQVAP-PKAGEVRIKIVSTAICHTD--AYTLDGL-DSEGK 155
+ + W + SLE++Q K GEV + + ST IC +D + + +
Sbjct: 13 FTNPQHDL-WISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVE 71
Query: 156 FPCVLGHEGSGIVESVGEGVTSVAPGDHVI--PLYIPQCNECKFCKSSKTNLCTKIR 210
VLGHE +G V +V V S+ GD V P + CN C+ C + + N C ++
Sbjct: 72 CDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEP-QVI-CNACEPCLTGRYNGCERVD 126
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 97.8 bits (244), Expect = 1e-23
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 19/123 (15%)
Query: 104 KAAVAWEPKKPLSLETIQV-APPKAGEVRIKIVSTAICHTDAYTLDG-------LDSEGK 155
+ W + + +E + K E+ IK+ + IC +D +
Sbjct: 32 LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90
Query: 156 FPCVLGHEGSGIVESVGEGVTS------VAPGDHVI--PLYIPQCNECKFCKSSKTNLCT 207
FP LGHE SG+V G + G+ V + C C+ C N C
Sbjct: 91 FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW--CGHCRPCAEGFPNHCE 148
Query: 208 KIR 210
+
Sbjct: 149 NLN 151
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 90.7 bits (226), Expect = 2e-21
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVL 160
+A V P L + + V P EVR+++ + A+ H D + G+ + P VL
Sbjct: 2 RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61
Query: 161 GHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT 211
G +GSG+V++VG GV APGD V+ C C+ C + + NLC + +
Sbjct: 62 GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQI 112
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 89.5 bits (223), Expect = 6e-21
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 106 AVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGS 165
A + + P + ++ ++ A C +D +T+ + +LGHE
Sbjct: 3 GFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAV 62
Query: 166 GIVESVGEGVTSVAPGDHVI-PLYIPQCNECKFCKSSKTNLCTKI 209
G V VG V PGD V+ P P + +
Sbjct: 63 GEVVEVGSEVKDFKPGDRVVVPAITP-DWRTSEVQRGYHQHSGGM 106
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 88.4 bits (220), Expect = 2e-20
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 92 HIMISLPQV---IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLD 148
H M P+ ++ A + LS +VR K++ +CH+D +++
Sbjct: 3 HGMSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIK 62
Query: 149 GLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCT 207
+P V GHE G V VG V V GD V + + C+ C+ C + N C
Sbjct: 63 NDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCP 122
Query: 208 KIRTT 212
K+ T
Sbjct: 123 KMILT 127
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 85.4 bits (212), Expect = 2e-19
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVL 160
++ KA A+ K+PL I P +V+I+I +CH+D + + + +PCV
Sbjct: 21 LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP 80
Query: 161 GHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
GHE G V +VG+ V APGD V + + C C+ C+ N C + T
Sbjct: 81 GHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGT 133
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 84.6 bits (210), Expect = 4e-19
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 110 EPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVLGHEGSGIV 168
+P K + L+ +++A + +VR+K+++ I +D + G + P V G+EG V
Sbjct: 37 DPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQV 96
Query: 169 ESVGEGVTSVAPGDHVIPLYIPQ 191
+VG VT + PGD VIP
Sbjct: 97 VAVGSNVTGLKPGDWVIPANAGL 119
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 84.6 bits (210), Expect = 4e-19
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 27/140 (19%)
Query: 106 AVAWEPKKPLSLETIQVAPPK---------AGEVRIKIVSTAICHTDAYTLDGLDSEGKF 156
V + + ++ + PK V +K+VST IC +D + + G +
Sbjct: 5 GVVYLGSGKVEVQK--IDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV- 61
Query: 157 PCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIP---QCNECKFCKSSKTNLCTKIRTTQ 213
VLGHE +G V G V ++ GD V +P C C+ CK T +C
Sbjct: 62 GLVLGHEITGEVIEKGRDVENLQIGDLVS---VPFNVACGRCRSCKEMHTGVC------- 111
Query: 214 LFLTSNVTISDFNMGYSMTG 233
LT N + GY G
Sbjct: 112 --LTVNPARAGGAYGYVDMG 129
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 83.8 bits (208), Expect = 6e-19
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 94 MISLPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE 153
M + + A +P LS T + +V I+I+ ICHTD +
Sbjct: 1 MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM 60
Query: 154 GKFPCVLGHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
+P V GHE G V VG V+ GD V + + C C C+ C K +
Sbjct: 61 SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS 120
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 83.9 bits (208), Expect = 9e-19
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 106 AVAWEPKKPLSLETIQVAPPK--------AGEVRIKIVSTAICHTDAYTLDGLDSEGKFP 157
+V + + L +ET V PK V +K+VST IC +D + G K
Sbjct: 5 SVVYHGTRDLRVET--VPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK-G 61
Query: 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIP---QCNECKFCKSSKTNLCTKIRTTQL 214
VLGHE +G V G V + GD V +P C C+ CK +++++C +
Sbjct: 62 HVLGHEITGEVVEKGSDVELMDIGDLVS---VPFNVACGRCRNCKEARSDVCE---NNLV 115
Query: 215 FLTSNVTISDFNMGYSMTG 233
N G+ + G
Sbjct: 116 ----NPDADLGAFGFDLKG 130
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 82.3 bits (204), Expect = 2e-18
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVL 160
++ K + + +V I I+ ICH+D ++ EG +P +
Sbjct: 3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIP 62
Query: 161 GHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
GHE +GI++ VG+GV GD V + ++ C CK CK + CTK+ T
Sbjct: 63 GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFT 115
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 79.7 bits (197), Expect = 2e-17
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 110 EPKKPLSLETIQVAPP--KAGEVRIKIVSTAICHTDAYTLDGL----------DSEGKFP 157
EPK L ++ ++ EV +K + + + +D + G+ +
Sbjct: 14 EPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPA 73
Query: 158 CVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQ 191
G+EG V VG V+S+ GD VIP ++
Sbjct: 74 APCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNF 107
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 79.9 bits (197), Expect = 2e-17
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 110 EPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEG--------------- 154
+ +K L L + + EV + +++++I + ++
Sbjct: 45 DVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWAT 104
Query: 155 ---KFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRT 211
+ VLG + SG+V G GV PGDHVI ++ +E + L T+ R
Sbjct: 105 RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEPATHGDGMLGTEQRA 163
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 78.8 bits (195), Expect = 3e-17
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 110 EPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVLGHEGSGIV 168
PK L +E + P K EV ++++ I +D + G P + G+EG GIV
Sbjct: 15 NPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIV 74
Query: 169 ESVGEGVTSVAPGDHVIPL 187
E+VG V+ G V+PL
Sbjct: 75 ENVGAFVSRELIGKRVLPL 93
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 78.0 bits (193), Expect = 8e-17
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVLGHEGSGIVESVGE 173
L L V ++ ++ ++ ++ + D L+ + FP V + SG+VE+VG+
Sbjct: 41 LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100
Query: 174 GVTSVAPGDHVIPLYIPQCNECKFCKSSKT 203
VT PGD VI + P + + +T
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRT 130
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 77.8 bits (192), Expect = 9e-17
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHE 163
A + + +V +++ + AI +D LG +
Sbjct: 13 TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTD 69
Query: 164 GSGIVESVGEGVTSVAPGDHVI 185
+G V +VG VT + GD V
Sbjct: 70 YAGTVVAVGSDVTHIQVGDRVY 91
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 77.1 bits (190), Expect = 2e-16
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 21/116 (18%)
Query: 104 KAAVAWEPKKP---LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKF---- 156
A + K P + L+ + V GE + ++++++ + +T
Sbjct: 44 FAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER 103
Query: 157 --------------PCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFC 198
V+G + +G+V G GV + GD V+ + E
Sbjct: 104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDG 159
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 76.4 bits (189), Expect = 2e-16
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 96 SLPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGK 155
S P+ E A + E K P ++ IKI + +C +D + G K
Sbjct: 2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMK 61
Query: 156 FPCVLGHEGSGIVESVGEGV-TSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
P V+GHE G V +G + + G V + + C EC CK+ CTK TT
Sbjct: 62 MPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTT 120
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 74.5 bits (184), Expect = 9e-16
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDS-----EGKF 156
KA + P L L + ++ IK+ + ++ D T +G +
Sbjct: 8 KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67
Query: 157 PCVLGHEGSGIVESVGEGVTSVAPGDHVI 185
P LG++ SG V +G V +V GD V+
Sbjct: 68 PSGLGYDFSGEVIELGSDVNNVNIGDKVM 96
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 73.4 bits (181), Expect = 3e-15
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL--DSEGKFPCVLG 161
AAV E P L + P G+V ++I ++ DA G ++ P +LG
Sbjct: 9 IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILG 68
Query: 162 HEGSGIVESVGEGVTSVAPGDHV 184
+ +G V +VG V S GD V
Sbjct: 69 MDLAGTVVAVGPEVDSFRVGDAV 91
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 72.6 bits (179), Expect = 4e-15
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 104 KAAVAWEPKKP---LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVL 160
+ W + ++L ++ + A ++ ++ + I D + V
Sbjct: 3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62
Query: 161 GHEGSGIVESVGEGVTSVAPGDHV 184
G +G+G++ VG V S G V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRV 86
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 71.9 bits (177), Expect = 9e-15
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEG 174
L A P E++++ + I D Y GL P LG E +GIV VG G
Sbjct: 16 LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 75
Query: 175 VTSVAPGDHV 184
V + GD V
Sbjct: 76 VKHIKAGDRV 85
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 71.1 bits (175), Expect = 2e-14
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL---DSEGKFPCVLGHEGSGIVESV 171
E ++V P G+VR++ + + D Y G+ G+ P V+G E + +VE V
Sbjct: 16 FVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEV 75
Query: 172 GEGVTSVAPGDHV 184
G GVT G+ V
Sbjct: 76 GPGVTDFTVGERV 88
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 70.3 bits (173), Expect = 3e-14
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEG 174
L + P V ++ + + D Y GL P LG EG+G+VE+VG+
Sbjct: 16 LEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDE 75
Query: 175 VTSVAPGDHV 184
VT GD V
Sbjct: 76 VTRFKVGDRV 85
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 67.6 bits (166), Expect = 2e-13
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEG 174
+ E V E+ IK T + + ++Y G+ + P VLG E SG V + G+G
Sbjct: 23 IKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGI-YPCEKPYVLGREASGTVVAKGKG 81
Query: 175 VTSVAPGDHV 184
VT+ GD V
Sbjct: 82 VTNFEVGDQV 91
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 66.1 bits (162), Expect = 8e-13
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVL 160
+A V L L + P+ GE++I++ + + D G D+ K P V
Sbjct: 5 RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 64
Query: 161 GHEGSGIVESVGEGVTSVAPGDHVIPL 187
G E SGIVE++G+ V GD V+
Sbjct: 65 GFECSGIVEALGDSVKGYEIGDRVMAF 91
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 64.1 bits (157), Expect = 4e-12
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 94 MISLPQVIECKAAVAWEPKKP--LSLET-IQVAPPKAGEVRIKIVSTAICHTDAYTLDGL 150
M + +++ +A +E P L L + I V PK +V IK+ + + + Y G
Sbjct: 23 MATGQKLM--RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGT 80
Query: 151 -DSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVI 185
+ P G + +G++E+VG+ ++ GD V
Sbjct: 81 YSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVF 116
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 62.7 bits (153), Expect = 1e-11
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 104 KAAVAWEP---KKPLSLETIQVAPP--KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
KA +P SL I++ P ++ +++ + ++ D +G
Sbjct: 24 KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK 83
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHV 184
V+G++ +GIV +VG VT PGD V
Sbjct: 84 VIGYDAAGIVSAVGPDVTLFRPGDEV 109
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 62.6 bits (153), Expect = 1e-11
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGK------ 155
KA A P L ++ V + + + +C D L ++G+
Sbjct: 23 KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDY-----LMTKGEYQLKME 77
Query: 156 FPCVLGHEGSGIVESVGEGVTSVAPGDHVI 185
P V G E +G+V S EG + + PGD V+
Sbjct: 78 PPFVPGIETAGVVRSAPEG-SGIKPGDRVM 106
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 62.8 bits (153), Expect = 1e-11
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 19/100 (19%)
Query: 104 KAAVAWEPKKPLSLETIQVAP----PKAGEVRIKIVSTAICHTDAYTLDGL--------- 150
A V + K L Q EV +K+ + ++ D G
Sbjct: 23 MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82
Query: 151 ------DSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHV 184
+FP LG + SG+V G V PGD V
Sbjct: 83 DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 62.6 bits (152), Expect = 2e-11
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 29/99 (29%)
Query: 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL------------------------ 150
LSL++I P EV I+I ++ + +D L G
Sbjct: 20 LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEG 79
Query: 151 -----DSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHV 184
+G+EG+G+V G + A
Sbjct: 80 AMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT 118
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 61.9 bits (151), Expect = 2e-11
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 110 EPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL-DSEGKFPCVLGHEGSGIV 168
+ L I V P +V IK+ +I +D + G G EG G +
Sbjct: 32 AMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTI 91
Query: 169 ESVGEGVTS-VAPGDHVI 185
+ G+ + G V
Sbjct: 92 VAGGDEPYAKSLVGKRVA 109
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 61.3 bits (149), Expect = 7e-11
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 59 LLLEDNQHEDKEARVTHELVSKNTDKLVIRN-------LCHIMISLPQVIECKAAVAWEP 111
+L++ + + L L +R L + + E
Sbjct: 157 VLVDVPEPAQLLPALPGVLACGEPQ-LALRRGGAHAPRLAGLGSDDVLPVPDGTGWRLEA 215
Query: 112 KKPLSLETIQ-------VAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEG 164
+P SL+ + AP GEVRI + + + DA G+ LG EG
Sbjct: 216 TRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG---VASLGSEG 272
Query: 165 SGIVESVGEGVTSVAPGDHVIPL 187
+G+V G GVT +APGD V+ +
Sbjct: 273 AGVVVETGPGVTGLAPGDRVMGM 295
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 59.6 bits (145), Expect = 1e-10
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 104 KAAVAWEPKK---PLSLETIQVAPP--KAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
KA +P K +T + P K E+ +KI S ++ D S+ P
Sbjct: 4 KAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSK--APR 61
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHV 184
VLG + G+VESVG VT GD V
Sbjct: 62 VLGFDAIGVVESVGNEVTMFNQGDIV 87
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 58.4 bits (142), Expect = 4e-10
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFP---- 157
+ P + + + GEV ++ + + D +G +P
Sbjct: 30 RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDI-----AQRQGSYPPPKD 84
Query: 158 --CVLGHEGSGIVESVGEGVTSVAPGDHVIPL 187
+LG E SG + VG GV+ A GD V L
Sbjct: 85 ASPILGLELSGEIVGVGPGVSGYAVGDKVCGL 116
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 53.4 bits (129), Expect = 2e-08
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 94 MISLPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSE 153
S+ Q + + V P G++ ++ + +D G
Sbjct: 20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP 79
Query: 154 G-KFPCVLGHEGSGIVESVGEGVTS-VAPGDHV 184
K P +G EG G V ++G ++ G V
Sbjct: 80 SVKPPFDIGFEGIGEVVALGLSASARYTVGQAV 112
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 47.9 bits (115), Expect = 9e-07
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 24/101 (23%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGK------FP 157
KA V PL L + + GEV +++ + + D L G P
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADH-----LMRLGAYLTRLHPP 56
Query: 158 CVLGHEGSGIVESVGEGVTS-----------VAPGDHVIPL 187
+ G E G+V G + P ++PL
Sbjct: 57 FIPGMEVVGVV--EGRRYAALVPQGGLAERVAVPKGALLPL 95
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 48.0 bits (115), Expect = 9e-07
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFP---- 157
A +P P L ++ + P GEV +K+ ++A+ D + +G++
Sbjct: 24 LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADL-----MQRQGQYDPPPG 78
Query: 158 --CVLGHEGSGIVESVGEGVTS-VAPGDHVIPL 187
+LG E SG V +G G GD + L
Sbjct: 79 ASNILGLEASGHVAELGPGCQGHWKIGDTAMAL 111
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 37.6 bits (87), Expect = 0.004
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 12/81 (14%)
Query: 107 VAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC--VLGHEG 164
+ W PL P + + T++ D + + GK + G
Sbjct: 1544 IRWVCS-PLH----YALPASCQDRLCSVYYTSLNFRDV-----MLATGKLSPDSIPGKWL 1593
Query: 165 SGIVESVGEGVTSVAPGDHVI 185
+ E A G V+
Sbjct: 1594 TRDCMLGMEFSGRDASGRRVM 1614
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.013
Identities = 52/331 (15%), Positives = 96/331 (29%), Gaps = 121/331 (36%)
Query: 10 QYYENYKSKSYKDEEFEQ------FEKKVDNISRLIANF----SNKD------------K 47
+ Y ++ F++ F + ++L+A F + D
Sbjct: 124 KNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 48 NIAAAAMREAKLLLEDNQHEDKEARVTHELVSKNTD-KLVIRN---------LCHIMISL 97
+ ++ + L + +A ++ + + N L I IS
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVF---TQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 98 P-----Q----VIECKAAVAWEPKKPLSLETIQVAPPKAGE-VRIK--IVSTAICHTD-- 143
P Q V+ K + P ++ G + + + AI TD
Sbjct: 239 PLIGVIQLAHYVVTAKLL-GFTPG--------ELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 144 ---------AYTLD---GLDSEGKFPCVLGHEGSGIVESV--GEGVTS----VA--PGDH 183
A T+ G+ +P S + +S+ EGV S ++ +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 184 VIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLTSNVTISDFNMGYSM---TG---SLE- 236
V Y+ + N + L V IS N G +G SL
Sbjct: 349 VQD-YVNKTN------------------SHLPAGKQVEISLVN-GAKNLVVSGPPQSLYG 388
Query: 237 -----RGSKRDNSF-QTTHFAVIKRRDFEKR 261
R +K + Q+ R F +R
Sbjct: 389 LNLTLRKAKAPSGLDQS-------RIPFSER 412
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.026
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 5 EEQAEQYYEN-YKSKSYKDEEFEQFEKKVDNISRLIANFSNKDKNIAAAAMREAKLLLED 63
EEQ ++ E SK + E E+ +K ++ ++ + +KN + +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE--QVEKNKINNRIADKAFY--- 146
Query: 64 NQHEDKEA 71
Q D +
Sbjct: 147 -QQPDADI 153
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 31.5 bits (72), Expect = 0.26
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 110 EPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAY-TL---DGLDSEGK------FPCV 159
+ K S++ ++ + AG+V + + + +L D L GK FP +
Sbjct: 10 DGKTLASVQHLEESQLPAGDVTVDV---------HWSSLNYKDALAITGKGKIIRHFPMI 60
Query: 160 LGHEGSGIVESVGEGVTSVAPGDHVI 185
G + +G V + + G V+
Sbjct: 61 PGIDFAGTVHASEDP--RFHAGQEVL 84
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 31.1 bits (71), Expect = 0.33
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 110 EPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAY-TL---DGLDSEGK------FPCV 159
E + ++TI + G+V +++ Y ++ DGL S +P V
Sbjct: 13 ETEFTAGVQTISMDDLPEGDVLVRV---------HYSSVNYKDGLASIPDGKIVKTYPFV 63
Query: 160 LGHEGSGIVESVGEGVTSVAPGDHVI 185
G + +G+V S GD VI
Sbjct: 64 PGIDLAGVVVSSQHP--RFREGDEVI 87
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 30.7 bits (70), Expect = 0.37
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 116 SLETIQVAPPKAGEVRIKIVSTAICHTDAY-TL---DGLDSEGK------FPCVLGHEGS 165
++TI V IK+ AY + DGL + +P +LG + +
Sbjct: 20 HVKTISTEDLPKDGVLIKV---------AYSGINYKDGLAGKAGGNIVREYPLILGIDAA 70
Query: 166 GIVESVGEGVTSVAPGDHVI 185
G V S + A GD VI
Sbjct: 71 GTVVSSNDP--RFAEGDEVI 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.0
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 21/121 (17%)
Query: 22 DEEFEQFEKKVDNISRLIANFSNKDKNIAAAAMREAKLL-LEDNQHE------DKEARVT 74
D + NI I + + + + + E LL L + Q+ + ++
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268
Query: 75 HELV----SKNTDKLVIRNLCHIMI-------SLPQVIECKAAVAWEPKKPLSLETIQVA 123
L+ + TD L HI + + +V + L E +
Sbjct: 269 --LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 124 P 124
P
Sbjct: 327 P 327
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 28.6 bits (63), Expect = 1.9
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 49 IAAAAMREAKLLLEDNQHEDKEARVTHELVSKNTDKLVIRNLCHIMISL 97
IA + A + + E V ++ L H + +
Sbjct: 189 IACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 28.6 bits (63), Expect = 2.6
Identities = 28/218 (12%), Positives = 66/218 (30%), Gaps = 26/218 (11%)
Query: 1 MALPEEQAEQYYENYKSKSYKDEEFEQFEKKVDNISRLIANFSNKDKNIAAAAMREAKLL 60
+ P +Q+ + + + +F++ + I + + + + +
Sbjct: 82 CSCPLQQSPRADNSVPGTPTRKISASEFDRPLRPIVVKDSEGTVSFLSDSEKKEQMPLTP 141
Query: 61 LEDNQHEDKEARVTHELVSKNTDKLVIRNLCH-IMISLPQVIECKAAVAWEPKKPLSLET 119
+ E + ELV + L + LCH I + + +I +
Sbjct: 142 PRFDHDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLF---------- 191
Query: 120 IQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESV---GEGVT 176
+ + + I + + ++ + GIV V GE +
Sbjct: 192 --LVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLE-----WNKGIVGHVAALGEPLN 244
Query: 177 -SVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
A D + Q K +++ LC I+ +
Sbjct: 245 IKDAYEDPRFNAEVDQITGYK----TQSILCMPIKNHR 278
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 28.3 bits (64), Expect = 2.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 41 NFSNKDKNIAAAAMR--EAKL------LLED 63
N+ D + AAMR E++L LL +
Sbjct: 79 NWGAPDDPKSFAAMRYTESRLSKYSELLLSE 109
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR
{Homo sapiens}
Length = 170
Score = 27.4 bits (60), Expect = 3.6
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLT 217
++ +I + C C++ +T+L + + +
Sbjct: 86 QDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNS 121
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 27.7 bits (62), Expect = 5.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 41 NFSNKDKNIAAAAMR--EAKL------LLED 63
N+ + D + AAMR EAKL LL +
Sbjct: 373 NWGSPDDPKSFAAMRYTEAKLSAYSELLLSE 403
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural
genomics, structural genomics consortium, SGC, RNA
binding protein; HET: SAH; 1.60A {Homo sapiens}
Length = 184
Score = 26.4 bits (59), Expect = 7.2
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 132 IKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQ 191
I+ + L K +LG+E GI ++ + + D + IPQ
Sbjct: 101 YTIIGVE-QTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL------DVCV--EIPQ 151
>2d74_B Translation initiation factor 2 beta subunit; protein complex;
2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Length = 148
Score = 26.5 bits (58), Expect = 7.2
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 184 VIPLYIPQCNECKFCKSSKTNLCTKIRTTQL 214
+ YI + C C S T + + R L
Sbjct: 96 KLKKYIKEYVICPVCGSPDTKIIKRDRFHFL 126
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 27.0 bits (60), Expect = 7.5
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 21/96 (21%)
Query: 150 LDSEGKFPCVLGHEGSGIVESVGEGVTSVAP---GDHVIPLYIPQCNECKFCKSSKTNLC 206
L + V +G V G+GVT V P G +VI I T
Sbjct: 149 LAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEG-YVIGSCIKHIP---IAGRDITYFI 204
Query: 207 TKIRTTQLFLTSNVTISDFNMGYSMTGSLERGSKRD 242
++ + + + +
Sbjct: 205 QQLLRDR--------------EVGIPPEQSLETAKA 226
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4
type zinc finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 157
Score = 26.1 bits (57), Expect = 8.4
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 182 DHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLFLT 217
++ +I + C C++ +T+L + + +
Sbjct: 93 QDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNS 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,798,277
Number of extensions: 218093
Number of successful extensions: 933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 93
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)