RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7798
(261 letters)
>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human
(Homo sapiens), different isozymes [TaxId: 9606]}
Length = 197
Score = 112 bits (280), Expect = 4e-31
Identities = 85/115 (73%), Positives = 96/115 (83%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+VI+CKAAVAWE KPLS+E I+VAPPKA EVRIKI++TA+CHTDAYTL G D EG FP
Sbjct: 3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
+LGH G+GIVESVGEGVT + GD VIPLYIPQC ECKFC + KTNLC KIR TQ
Sbjct: 63 ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQ 117
>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod
(Gadus callarias) [TaxId: 8053]}
Length = 199
Score = 104 bits (261), Expect = 2e-28
Identities = 67/117 (57%), Positives = 83/117 (70%)
Query: 97 LPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKF 156
+ +VI+CKAAVAWE KPL +E I+V P A E+RIKI++T +CHTD Y L + F
Sbjct: 3 VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGF 62
Query: 157 PCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
P VLGHEG+GIVESVG GVT PG+ VIPL+I QC EC+FC+S KTN C K +
Sbjct: 63 PVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119
>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse
(Mus musculus), class II [TaxId: 10090]}
Length = 202
Score = 100 bits (250), Expect = 1e-26
Identities = 62/114 (54%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+VI+CKAA+AW+ PL +E I+V+PPKA EVRI++++T +C TD D + FP
Sbjct: 5 KVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDP-KKKALFPV 63
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT 212
VLGHE +GIVESVG GVT+ PGD VIP + PQC CK C S TNLC K+R
Sbjct: 64 VLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNF 117
>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase
{Frog (Rana perezi) [TaxId: 8403]}
Length = 198
Score = 97.6 bits (242), Expect = 2e-25
Identities = 68/115 (59%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+ I CKAAVAWEP KPLSLETI VAPPKA EVRIKI+++ IC +D+ L KFP
Sbjct: 5 KDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKE-IIPSKFPV 63
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
+LGHE G+VES+G GVT V PGD VIPL++PQC C+ CKSS +N C K
Sbjct: 64 ILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 118
>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse
(Equus caballus) [TaxId: 9796]}
Length = 198
Score = 96.1 bits (238), Expect = 7e-25
Identities = 62/115 (53%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 99 QVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC 158
+VI+CKAAV WE KKP S+E ++VAPPKA EVRIK+V+T IC +D + + G P
Sbjct: 5 KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSG-TLVTPLPV 63
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
+ GHE +GIVES+GEGVT+V PGD VIPL+ PQC +C+ CK + N C K +
Sbjct: 64 IAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSM 118
>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 175
Score = 82.6 bits (203), Expect = 4e-20
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 96 SLPQVIECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLD-SEG 154
+LPQ KAAV PL +E ++V P G+V +KI ++ +CHTD + +G +
Sbjct: 1 TLPQ--TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKP 58
Query: 155 KFPCVLGHEGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLC 206
P + GHEG G V +VG GVT V GD V IP C C+ C + LC
Sbjct: 59 PLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC 111
>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 81.9 bits (201), Expect = 1e-19
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHE 163
KA A+ K+PL I P +V+I+I +CH+D + + + +PCV GHE
Sbjct: 2 KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61
Query: 164 GSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLCTKIRTT 212
G V +VG+ V APGD V + + C C+ C+ N C + T
Sbjct: 62 IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGT 111
>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 194
Score = 76.9 bits (188), Expect = 9e-18
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLG 161
+ AAV L+ +++ P+ EV +K+V+T +CHTD D P VLG
Sbjct: 3 DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQ-KYPVPLPAVLG 61
Query: 162 HEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLF 215
HEGSGI+E++G VT + GDHV+ L C +C C + C++
Sbjct: 62 HEGSGIIEAIGPNVTELQVGDHVV-LSYGYCGKCTQCNTGNPAYCSEFFGRNFS 114
>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 177
Score = 73.8 bits (180), Expect = 9e-17
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGL--------DSEGK 155
+A E KPLSL+ I V PK +V IK+ + +CH+D + G D K
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 156 FPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT 212
P LGHE +G +E VG+ V + GD V C +C+ + +LC R
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL 118
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436
{Thermotoga maritima [TaxId: 2336]}
Length = 184
Score = 73.0 bits (178), Expect = 2e-16
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 5/135 (3%)
Query: 101 IECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVL 160
++ A V + +PL + +++ G + ++I+S +C +D + G D P +L
Sbjct: 3 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62
Query: 161 GHEGSGIVESVGEGVTSVAPGD-----HVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLF 215
GHEG+G V V + ++ C EC +CK SK R
Sbjct: 63 GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGI 122
Query: 216 LTSNVTISDFNMGYS 230
YS
Sbjct: 123 NRGCSEYPHLRGCYS 137
>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 171
Score = 66.5 bits (161), Expect = 3e-14
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLD-GLDSEGKFPCVLGH 162
KAAV + K+PL ++ ++ GEV ++I + +CHTD + + K P + GH
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 163 EGSGIVESVGEGVTSVAPGDHV-IPLYIPQCNECKFCKSSKTNLC 206
EG GIVE VG GVT + GD V IP C C +C S + LC
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC 106
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol
dehydrogenase) {Silverleaf whitefly (Bemisia
argentifolii) [TaxId: 77855]}
Length = 178
Score = 63.9 bits (154), Expect = 4e-13
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 105 AAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDG---LDSEGKFPCVLG 161
+AV ++ L LE + PK EV +++ IC +D + + D K P V+G
Sbjct: 4 SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62
Query: 162 HEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLC 206
HE SG V VG+ V + GD V C C+FCK K NLC
Sbjct: 63 HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC 107
>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 171
Score = 63.2 bits (152), Expect = 6e-13
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 104 KAAVAWEPKKPLSLETIQV-APPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFP---CV 159
KAA E KPL +E + +V ++I +CHTD + + G+ E P
Sbjct: 1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60
Query: 160 LGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT 212
LGHE G +E V EGV + GD VI C C++ + C +
Sbjct: 61 LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP 113
>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol
dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 61.5 bits (148), Expect = 3e-12
Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 102 ECKAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEG---KFPC 158
+ V P L LE + P EV +++ S IC +D + + K P
Sbjct: 7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPM 65
Query: 159 VLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTT 212
VLGHE SG VE VG V + PGD V +FCK + NL I
Sbjct: 66 VLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC 119
>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol
dehydrogenase, ADH6 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 192
Score = 61.0 bits (147), Expect = 5e-12
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 96 SLPQVIECKAAVAWEPKKPLSLETIQVAPP--KAGEVRIKIVSTAICHTDAYTLDGLDSE 153
S P+ + + + + + P ++ IKI + +C +D + G
Sbjct: 2 SYPEKF--EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN 59
Query: 154 GKFPCVLGHEGSGIVESVGEGVTS-VAPGDH-VIPLYIPQCNECKFCKSSKTNLCTKIRT 211
K P V+GHE G V +G S + G + + C EC CK+ CTK T
Sbjct: 60 MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVT 119
Query: 212 T 212
T
Sbjct: 120 T 120
>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary
alcohol dehydrogenase {Clostridium beijerinckii [TaxId:
1520]}
Length = 177
Score = 55.4 bits (132), Expect = 4e-10
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 1/112 (0%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHE 163
K K L + + + ++ ++ + C +D +T+ + +LGHE
Sbjct: 2 KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60
Query: 164 GSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQLF 215
G V VG V PGD VI ++ + F
Sbjct: 61 AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKF 112
>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 201
Score = 47.2 bits (111), Expect = 3e-07
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 104 KAAVAWEPKKPLSLETIQV-------APPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKF 156
+ V K + ++ I V +K+VST IC +D + + G + +
Sbjct: 3 RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQV 60
Query: 157 PCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKIRTTQ 213
VLGHE +G V G V ++ GD V + C C+ CK T +C + +
Sbjct: 61 GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPAR 117
>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus
thermophilus [TaxId: 274]}
Length = 131
Score = 43.7 bits (102), Expect = 2e-06
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 104 KAAVAWEPKKPLSLETIQVAPPKAGEVRIKIVSTAICHTDAY 145
KA V PL L + + GEV +++ + + D
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHL 43
>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 152
Score = 41.0 bits (95), Expect = 3e-05
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLG 161
+A V + + ++TI + G+V +++ +++ + D K
Sbjct: 5 QAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKT-YPFV 63
Query: 162 HEGSGIVESVGEGVTSVAPGDHVIPLYIPQC 192
V GD VI
Sbjct: 64 PGIDLAGVVVSSQHPRFREGDEVIATGYEIG 94
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase
{Yeast (Candida tropicalis) [TaxId: 5482]}
Length = 175
Score = 40.5 bits (93), Expect = 6e-05
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 100 VIECKAAVAWE---PKKPLSLETIQVAPP--KAGEVRIKIVSTAICHTDAYTLDGLDSEG 154
+I +A + + PK L ++ ++ EV +K + + + +D + G+
Sbjct: 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60
Query: 155 KFPC 158
Sbjct: 61 PAKT 64
>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 147
Score = 35.8 bits (81), Expect = 0.002
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 115 LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESV 171
L A P E++++ + I D Y GL P LG E +GIV V
Sbjct: 15 LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKV 71
>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH
{Escherichia coli [TaxId: 562]}
Length = 146
Score = 33.3 bits (75), Expect = 0.010
Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAYTLDGLDSEGKFPC-VL 160
+A + + S++T+ + G+V + + +++ + DA + G + +
Sbjct: 2 QALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIP 61
Query: 161 GHEGSGIVESVGEGVTSVAPG 181
G + +G V + +
Sbjct: 62 GIDFAGTVRTSEDPRFHAGQE 82
>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP
{Bacillus subtilis [TaxId: 1423]}
Length = 162
Score = 31.4 bits (70), Expect = 0.051
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 104 KAAVAWEPKKP--LSLETIQVAPPKAGEVRIKIVSTAICHTDAY 145
+A A + + ++TI V IK+ + I + D
Sbjct: 5 QALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGL 48
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 327
Score = 28.6 bits (63), Expect = 0.78
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 131 RIKIVSTAICHTDAYTLDGLDSEGKFPCVLGHEGSGIVESVGEGVTSVAPGDHVIPLYIP 190
+I + +A Y DGLD +FP + G + + + + GD ++ +
Sbjct: 107 QIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAA 166
Query: 191 QCNE 194
E
Sbjct: 167 LHKE 170
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 27.2 bits (60), Expect = 2.1
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 6 EQAEQYYENYKSKSYKDEEFEQFEK 30
AE Y + + + E F
Sbjct: 466 AFAEAYRNLLREEPLEILREEDFVA 490
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 25.5 bits (56), Expect = 3.3
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 1 MALPEEQAEQYYENYKSKSYKDEEFEQFEKK---------VDNISRLIANFSNKDKNIAA 51
LPE+ + YK+ K + FEKK D + + +D A
Sbjct: 39 ATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCA 98
Query: 52 AAMREAKLLLEDNQHE 67
+ ++K +++ + E
Sbjct: 99 EFLTQSKTRIQEYEKE 114
>d2bbva_ b.121.4.4 (A:) Alphanodavirus capsid protein {Black beetle
virus [TaxId: 12285]}
Length = 308
Score = 25.7 bits (56), Expect = 6.1
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 152 SEGKFPCVLGHEGSGIVESVG--EGVTSVAPGDHVIPLYIPQCNECKFCKSSKTNLCTKI 209
S +FP S +V ++ +GV +V P D+ +I C +
Sbjct: 143 SNVQFPVATTPATSALVHTLVGLDGVLAVGP-DNFSESFIKGVFSQSVCNEPDFEFSDIL 201
Query: 210 RTTQLFLTSNVTISDFNMGYSMTGSLE 236
Q +NVT++ +++ E
Sbjct: 202 EGIQTLPPANVTVATSGQPFNLAAGAE 228
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 107
Score = 24.4 bits (53), Expect = 7.0
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 18/75 (24%)
Query: 64 NQHEDKEARVTHELVSKNTDKLVIRNLCHIMISLPQVIECKAAVAWEPKKPLSLETIQVA 123
+ K+ +T + DKLV+ H + + A A+ P
Sbjct: 51 DPSGSKDVVITRTAGAPKEDKLVV----HFASAPADATD--AQAAFVAVAP--------- 95
Query: 124 PPKAGEVRIKIVSTA 138
AG V I + +TA
Sbjct: 96 ---AGTVTIPMSATA 107
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 25.5 bits (55), Expect = 7.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 165 SGIVESVGEGVTSVAP 180
+GIV G+GVT P
Sbjct: 3 TGIVLDSGDGVTHNVP 18
>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase,
ADC {Escherichia coli [TaxId: 562]}
Length = 118
Score = 24.2 bits (53), Expect = 9.8
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 161 GHEGSGIVESVGEGVTSVAPGDHVI 185
GS I+ G + GD VI
Sbjct: 62 AERGSRIISVNGAAAHCASVGDIVI 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 913,955
Number of extensions: 40624
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 36
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)