Query psy7799
Match_columns 83
No_of_seqs 45 out of 47
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:06:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t3j_A Mitofusin 1; coiled coi 100.0 1.8E-41 6.2E-46 224.5 8.1 80 1-80 17-96 (96)
2 1urq_A M-tomosyn isoform; tran 95.5 0.18 6.2E-06 30.1 8.6 53 21-73 5-57 (63)
3 1hs7_A Syntaxin VAM3; UP-and-D 92.8 0.46 1.6E-05 30.7 6.6 68 5-78 10-87 (97)
4 3hd7_A Vesicle-associated memb 92.7 1.1 3.8E-05 28.0 9.0 49 21-69 6-54 (91)
5 1wlq_A Geminin; coiled-coil; 2 91.8 1.6 5.4E-05 27.7 8.6 69 4-73 10-80 (83)
6 3u0c_A Invasin IPAB, 62 kDa an 91.6 1.6 5.4E-05 31.5 8.7 56 11-73 87-142 (201)
7 1gl2_A Endobrevin; membrane pr 91.1 1.4 4.9E-05 25.8 7.6 47 21-67 10-56 (65)
8 2wvr_A Geminin; DNA replicatio 90.1 3 0.0001 30.4 9.1 75 4-79 87-163 (209)
9 1sfc_A VAMP 2, protein (synapt 90.0 2.4 8.3E-05 26.8 9.3 50 20-69 30-79 (96)
10 1n7s_A Vesicle-associated memb 89.7 1.9 6.4E-05 25.0 9.5 48 20-67 4-51 (63)
11 1l4a_A Synaptobrevin; snare, s 88.7 1.3 4.3E-05 27.0 5.5 44 21-64 16-59 (80)
12 3b5n_A Synaptobrevin homolog 1 87.0 3 0.0001 24.0 9.3 46 22-67 4-49 (61)
13 2nps_A VAMP-4, vesicle-associa 85.3 4.2 0.00014 24.2 8.0 48 22-69 10-57 (74)
14 2p2u_A HOST-nuclease inhibitor 85.0 6.1 0.00021 27.1 8.0 56 17-78 17-75 (171)
15 2ve7_A Kinetochore protein HEC 84.9 2.4 8.3E-05 31.6 6.2 39 15-53 169-207 (315)
16 3swy_A Cyclic nucleotide-gated 78.5 4.8 0.00016 22.8 4.5 29 18-46 17-45 (46)
17 3swf_A CGMP-gated cation chann 75.8 8.7 0.0003 23.7 5.5 32 18-49 19-50 (74)
18 1gd2_E Transcription factor PA 74.3 8.2 0.00028 23.3 5.1 37 38-74 29-69 (70)
19 3gp4_A Transcriptional regulat 74.0 16 0.00054 23.9 8.8 49 31-79 81-133 (142)
20 3ci9_A Heat shock factor-bindi 73.6 5.1 0.00017 22.8 3.7 30 15-44 15-44 (48)
21 2dfs_A Myosin-5A; myosin-V, in 72.4 8.7 0.0003 33.1 6.5 45 34-78 956-1000(1080)
22 2zqm_A Prefoldin beta subunit 71.4 15 0.00051 22.5 6.5 23 29-51 68-90 (117)
23 1uii_A Geminin; human, DNA rep 70.6 17 0.00058 22.9 9.1 60 4-64 18-79 (83)
24 3etw_A Adhesin A; antiparallel 70.5 16 0.00054 24.3 6.2 35 20-54 71-105 (119)
25 3ilw_A DNA gyrase subunit A; D 69.0 7.5 0.00026 31.1 5.1 66 11-79 384-461 (470)
26 3s9g_A Protein hexim1; cyclin 67.8 23 0.00077 23.2 6.4 63 14-76 11-79 (104)
27 2ve7_A Kinetochore protein HEC 67.8 10 0.00034 28.2 5.3 54 14-67 172-229 (315)
28 3ci9_A Heat shock factor-bindi 67.2 15 0.0005 20.8 5.0 33 20-52 13-45 (48)
29 3nmd_A CGMP dependent protein 66.3 20 0.00068 22.0 6.4 11 66-76 58-68 (72)
30 3ghg_A Fibrinogen alpha chain; 65.8 31 0.0011 28.4 8.1 25 48-72 131-155 (562)
31 2no2_A HIP-I, huntingtin-inter 65.7 24 0.00081 22.6 10.3 47 10-59 19-65 (107)
32 2inr_A DNA topoisomerase 4 sub 65.4 17 0.00058 29.4 6.5 53 25-80 448-500 (514)
33 1lrz_A FEMA, factor essential 64.7 17 0.00058 27.2 6.1 47 30-76 246-295 (426)
34 2c5k_T Syntaxin TLG1, T-snare 64.2 24 0.00081 22.1 8.4 18 12-29 9-26 (95)
35 2xkj_E Topoisomerase IV; type 63.9 15 0.00052 31.0 6.2 54 24-80 689-742 (767)
36 2pnv_A Small conductance calci 63.2 17 0.00058 20.1 4.8 26 25-50 10-35 (43)
37 3twe_A Alpha4H; unknown functi 63.1 5.9 0.0002 20.0 2.2 17 48-64 8-24 (27)
38 2nov_A DNA topoisomerase 4 sub 63.1 17 0.00057 29.3 6.0 49 29-80 428-476 (496)
39 4dnd_A Syntaxin-10, SYN10; str 62.8 30 0.001 22.8 7.1 48 11-58 29-94 (130)
40 2v71_A Nuclear distribution pr 62.2 39 0.0013 23.9 10.5 40 39-78 39-79 (189)
41 2wps_A Trimeric autotransporte 61.5 27 0.00091 23.0 5.8 41 21-61 59-99 (107)
42 3lpx_A GYRA, DNA gyrase, A sub 61.5 13 0.00043 30.1 5.1 54 24-80 432-485 (500)
43 3kin_B Kinesin heavy chain; mo 61.0 13 0.00044 24.0 4.2 27 49-75 90-116 (117)
44 3he5_B Synzip2; heterodimeric 60.4 17 0.00058 20.7 4.2 25 28-52 21-45 (52)
45 2d4y_A HAP1, flagellar HOOK-as 58.8 51 0.0017 25.1 7.9 17 57-73 131-147 (463)
46 3ra3_B P2F; coiled coil domain 57.3 8.5 0.00029 19.5 2.2 19 33-51 9-27 (28)
47 2zxx_A Geminin; coiled-coil, c 55.9 34 0.0012 21.2 8.4 70 4-73 6-76 (79)
48 1zvu_A Topoisomerase IV subuni 54.6 19 0.00064 30.3 5.1 48 29-79 400-447 (716)
49 2js5_A Uncharacterized protein 54.4 20 0.00068 21.9 4.0 30 50-80 5-34 (71)
50 2yny_A General control protein 54.1 29 0.00098 22.7 5.0 32 29-60 74-105 (106)
51 3oja_B Anopheles plasmodium-re 53.8 71 0.0024 24.3 8.6 24 53-76 507-530 (597)
52 3he4_A Synzip6; heterodimeric 53.5 30 0.001 19.9 5.0 23 30-52 30-52 (56)
53 1l8d_A DNA double-strand break 53.1 36 0.0012 20.8 5.3 12 61-72 30-41 (112)
54 1m1j_B Fibrinogen beta chain; 53.0 84 0.0029 24.9 9.8 16 28-43 97-112 (464)
55 3s84_A Apolipoprotein A-IV; fo 52.9 63 0.0022 23.5 11.3 41 8-48 36-76 (273)
56 1fxk_A Prefoldin; archaeal pro 52.5 36 0.0012 20.5 6.5 19 16-34 4-22 (107)
57 3kqg_A Langerin, C-type lectin 52.5 13 0.00045 24.0 3.2 18 34-51 19-36 (182)
58 3iv1_A Tumor susceptibility ge 51.9 40 0.0014 20.8 7.7 28 31-58 11-38 (78)
59 3tul_A Cell invasion protein S 51.9 24 0.00083 24.6 4.6 50 17-73 45-94 (158)
60 1fxk_A Prefoldin; archaeal pro 51.2 38 0.0013 20.4 6.2 22 29-50 63-84 (107)
61 2j69_A Bacterial dynamin-like 51.2 72 0.0025 25.7 7.9 18 60-77 674-691 (695)
62 1dip_A Delta-sleep-inducing pe 50.4 25 0.00085 21.9 4.0 32 29-60 13-44 (78)
63 2l7b_A Apolipoprotein E, APO-E 49.7 35 0.0012 25.4 5.5 54 8-61 95-149 (307)
64 2xcs_B DNA gyrase subunit B, D 49.4 17 0.00059 30.4 4.1 67 11-80 605-683 (692)
65 2yo3_A General control protein 49.4 68 0.0023 24.0 7.0 41 20-60 216-259 (268)
66 1m1j_C Fibrinogen gamma chain; 49.0 58 0.002 25.3 6.9 46 30-75 83-132 (409)
67 1lwu_C Fibrinogen gamma chain; 48.6 72 0.0025 24.0 7.2 21 30-50 25-45 (323)
68 3t98_A Nuclear pore complex pr 48.3 37 0.0013 19.4 4.5 28 11-38 20-47 (51)
69 3m9b_A Proteasome-associated A 48.0 28 0.00096 25.8 4.7 26 51-76 71-96 (251)
70 1gl2_D Syntaxin 8, vesicle tra 47.7 37 0.0013 19.2 7.3 52 16-67 12-63 (65)
71 2c5k_T Syntaxin TLG1, T-snare 47.6 25 0.00084 22.0 3.8 22 28-49 40-61 (95)
72 1ic2_A Tropomyosin alpha chain 46.6 44 0.0015 19.9 9.0 28 50-77 36-63 (81)
73 1deb_A APC protein, adenomatou 45.7 43 0.0015 19.4 6.3 40 21-60 4-46 (54)
74 3he4_B Synzip5; heterodimeric 45.6 38 0.0013 18.8 5.1 32 41-72 6-37 (46)
75 1lwu_B Fibrinogen beta chain; 45.3 30 0.001 26.1 4.6 38 15-52 8-49 (323)
76 2wuj_A Septum site-determining 45.2 40 0.0014 19.0 4.8 25 27-51 23-47 (57)
77 2dq0_A Seryl-tRNA synthetase; 44.9 1.1E+02 0.0036 23.8 8.1 46 33-78 47-99 (455)
78 1x79_B RAB GTPase binding effe 44.3 44 0.0015 21.9 4.7 42 9-50 55-96 (112)
79 1dkg_A Nucleotide exchange fac 44.1 59 0.002 22.6 5.7 36 36-77 40-75 (197)
80 3jsv_C NF-kappa-B essential mo 44.0 61 0.0021 20.7 7.1 43 29-78 14-56 (94)
81 4e61_A Protein BIM1; EB1-like 43.9 59 0.002 21.1 5.3 18 35-52 22-39 (106)
82 2w83_C C-JUN-amino-terminal ki 43.8 53 0.0018 20.4 4.8 45 28-72 27-75 (77)
83 3mq9_A Bone marrow stromal ant 43.2 1E+02 0.0034 22.9 7.4 42 29-73 427-468 (471)
84 3t98_B Nucleoporin NUP58/NUP45 43.1 59 0.002 20.3 7.3 29 53-81 56-84 (93)
85 2kog_A Vesicle-associated memb 43.1 1.2 4.2E-05 29.2 -3.0 40 21-60 34-73 (119)
86 1i84_S Smooth muscle myosin he 43.0 1.6E+02 0.0055 25.3 9.2 21 53-73 918-938 (1184)
87 2avr_X Adhesion A; antiparalle 43.0 71 0.0024 21.2 6.2 34 21-54 72-105 (119)
88 4dzn_A Coiled-coil peptide CC- 42.9 36 0.0012 17.7 3.8 15 36-50 7-21 (33)
89 1deq_A Fibrinogen (alpha chain 42.5 69 0.0024 25.2 6.3 29 23-51 52-80 (390)
90 2zqm_A Prefoldin beta subunit 42.1 57 0.0019 19.8 6.3 19 16-34 9-27 (117)
91 1am9_A Srebp-1A, protein (ster 41.9 46 0.0016 19.9 4.3 15 17-31 20-34 (82)
92 2gd5_A Charged multivesicular 41.6 72 0.0025 21.4 5.7 30 28-57 11-40 (179)
93 2l5g_B Putative uncharacterize 41.4 45 0.0015 18.5 4.8 17 34-50 5-21 (42)
94 1zme_C Proline utilization tra 40.9 42 0.0014 18.5 3.8 19 34-52 47-65 (70)
95 2cly_B ATP synthase D chain, m 40.7 39 0.0013 22.9 4.2 35 18-52 89-123 (160)
96 2qyw_A Vesicle transport throu 40.6 64 0.0022 20.0 6.5 52 25-78 50-101 (102)
97 3swk_A Vimentin; cytoskeleton, 40.6 61 0.0021 19.7 5.4 41 21-61 15-55 (86)
98 2wq1_A General control protein 40.5 41 0.0014 17.8 4.5 25 34-58 3-27 (33)
99 1lwu_B Fibrinogen beta chain; 40.2 61 0.0021 24.4 5.6 48 24-73 6-53 (323)
100 2nps_D Syntaxin-6; vesicle fus 39.8 58 0.002 19.3 8.1 52 17-68 23-74 (82)
101 1nfn_A Apolipoprotein E3; lipi 39.6 90 0.0031 21.4 7.0 35 13-47 92-126 (191)
102 1rh4_A Right-handed coiled coi 38.9 44 0.0015 17.6 4.7 29 12-40 5-33 (35)
103 2j5u_A MREC protein; bacterial 38.0 38 0.0013 24.3 4.0 27 35-61 30-56 (255)
104 4dac_A Computationally designe 37.8 39 0.0013 17.0 2.9 17 36-52 6-22 (28)
105 2lf0_A Uncharacterized protein 37.6 91 0.0031 20.9 6.3 43 13-55 7-60 (123)
106 3qne_A Seryl-tRNA synthetase, 37.3 1.5E+02 0.0053 23.4 8.1 45 34-78 50-101 (485)
107 3ok8_A Brain-specific angiogen 37.2 1.1E+02 0.0039 21.9 9.9 31 47-77 132-173 (222)
108 3csx_A Putative uncharacterize 37.2 27 0.00092 21.8 2.7 30 50-80 17-46 (81)
109 3swf_A CGMP-gated cation chann 36.6 67 0.0023 19.7 4.4 24 56-79 33-56 (74)
110 1deq_A Fibrinogen (alpha chain 36.5 1.2E+02 0.0041 23.8 6.9 16 37-52 140-155 (390)
111 2er8_A Regulatory protein Leu3 36.2 19 0.00064 20.3 1.8 17 34-50 52-68 (72)
112 1vcs_A Vesicle transport throu 35.2 74 0.0025 19.7 4.6 53 24-78 38-90 (102)
113 3p8q_A GP5, head protein; viru 35.0 8.1 0.00028 28.9 0.0 27 12-38 5-31 (385)
114 2oto_A M protein; helical coil 34.0 99 0.0034 20.2 7.0 24 52-75 54-77 (155)
115 4dzo_A Mitotic spindle assembl 33.7 49 0.0017 21.6 3.7 27 35-61 8-35 (123)
116 1l4a_D S-SNAP25 fusion protein 33.3 82 0.0028 19.1 5.4 43 16-58 33-75 (87)
117 2etd_A LEMA protein; bromodoma 33.0 74 0.0025 21.6 4.7 20 12-31 76-95 (171)
118 1n7s_D SNAP-25A; neuronal snar 32.9 68 0.0023 18.1 7.6 50 16-65 13-62 (66)
119 3fx7_A Putative uncharacterize 32.9 95 0.0032 19.7 6.7 45 30-80 44-88 (94)
120 1xaw_A Occludin; coiled-coil, 32.8 68 0.0023 21.7 4.4 13 22-34 61-73 (140)
121 1m1j_C Fibrinogen gamma chain; 32.7 1E+02 0.0034 24.0 5.9 15 54-68 83-97 (409)
122 3frt_A Charged multivesicular 32.6 1.3E+02 0.0044 21.3 6.1 33 27-59 10-42 (218)
123 3thf_A Protein shroom; coiled- 32.4 1.3E+02 0.0046 21.3 8.0 54 28-81 91-144 (190)
124 1sfc_D Protein (SNAP-25B), pro 31.4 87 0.003 18.8 7.6 50 16-65 32-81 (87)
125 2wg5_A General control protein 31.3 62 0.0021 20.3 3.8 19 32-50 15-33 (109)
126 1ses_A Seryl-tRNA synthetase; 31.2 1.4E+02 0.0049 22.7 6.5 43 35-77 46-93 (421)
127 2dgc_A Protein (GCN4); basic d 31.1 79 0.0027 18.2 4.8 30 48-77 30-59 (63)
128 3u9j_A F-BOX/LRR-repeat protei 31.1 14 0.00049 25.7 0.7 34 50-83 89-128 (160)
129 1hlo_A Protein (transcription 30.8 70 0.0024 18.8 3.8 54 14-74 23-76 (80)
130 2jee_A YIIU; FTSZ, septum, coi 30.7 97 0.0033 19.1 9.1 57 20-76 6-69 (81)
131 4gfh_A DNA topoisomerase 2; to 30.4 45 0.0015 29.3 3.8 47 29-76 1125-1171(1177)
132 2jn6_A Protein CGL2762, transp 30.2 20 0.00068 21.0 1.2 40 12-51 27-79 (97)
133 1q08_A Zn(II)-responsive regul 29.6 88 0.003 18.3 5.8 29 31-59 39-67 (99)
134 3htk_C E3 SUMO-protein ligase 29.5 1.7E+02 0.0059 21.6 7.3 33 35-67 58-90 (267)
135 2dq3_A Seryl-tRNA synthetase; 29.4 98 0.0034 23.6 5.3 44 34-77 47-97 (425)
136 1qzv_F Plant photosystem I: su 29.1 18 0.00061 25.0 0.9 36 26-61 8-43 (154)
137 2oqq_A Transcription factor HY 29.0 78 0.0027 17.5 4.2 20 33-52 5-24 (42)
138 1q06_A Transcriptional regulat 28.9 1.1E+02 0.0039 19.3 5.3 29 32-60 80-108 (135)
139 1r8d_A Transcription activator 28.6 92 0.0032 18.8 4.2 25 33-57 77-101 (109)
140 3qh9_A Liprin-beta-2; coiled-c 28.6 67 0.0023 20.0 3.5 19 35-53 23-41 (81)
141 2efr_A General control protein 28.6 1.4E+02 0.0048 20.3 8.1 25 50-74 128-152 (155)
142 2dfs_A Myosin-5A; myosin-V, in 28.0 2.2E+02 0.0077 24.5 7.7 9 62-70 1023-1031(1080)
143 4g2k_A General control protein 28.0 1.4E+02 0.0047 20.0 6.3 41 31-74 14-54 (125)
144 1aq5_A Matrilin-1, CMP, cartil 28.0 86 0.0029 17.6 4.3 24 28-51 20-43 (47)
145 4ani_A Protein GRPE; chaperone 27.5 1.4E+02 0.0047 21.3 5.5 23 54-76 72-94 (213)
146 2v71_A Nuclear distribution pr 26.8 1.7E+02 0.0057 20.6 10.0 52 19-70 30-85 (189)
147 3u1c_A Tropomyosin alpha-1 cha 26.7 1.2E+02 0.004 18.8 8.5 14 36-49 42-55 (101)
148 3bbp_D GRIP and coiled-coil do 26.7 1.1E+02 0.0036 18.7 4.1 30 27-56 39-68 (71)
149 2j69_A Bacterial dynamin-like 26.4 2E+02 0.0069 23.1 6.8 20 29-48 350-369 (695)
150 2nut_C Vesicle-trafficking pro 26.4 3.6 0.00012 28.1 -3.0 45 20-64 134-178 (196)
151 1i4d_A Arfaptin 2, partner of 26.1 1.6E+02 0.0055 21.0 5.7 31 42-72 8-38 (224)
152 2lw1_A ABC transporter ATP-bin 25.8 1.1E+02 0.0038 18.2 6.8 42 35-76 26-77 (89)
153 2p22_C Protein SRN2; endosome, 25.6 1.7E+02 0.0058 20.3 7.6 16 34-49 86-101 (192)
154 3kin_B Kinesin heavy chain; mo 25.4 1.3E+02 0.0046 19.0 5.0 23 37-62 95-117 (117)
155 1lwu_C Fibrinogen gamma chain; 25.3 2.2E+02 0.0074 21.4 7.7 21 55-75 33-53 (323)
156 1a93_B MAX protein, coiled coi 24.7 50 0.0017 17.5 2.1 18 35-52 11-28 (34)
157 3mq9_A Bone marrow stromal ant 24.7 2.1E+02 0.0073 21.1 8.0 45 28-79 370-414 (471)
158 2x2e_A Dynamin-1; nitration, h 24.5 1.9E+02 0.0066 20.6 6.2 53 24-78 288-342 (353)
159 1hwt_C Protein (heme activator 24.4 30 0.001 19.7 1.3 16 38-53 58-73 (81)
160 2pp6_A Gifsy-2 prophage ATP-bi 24.3 66 0.0023 20.8 3.0 19 17-35 3-21 (102)
161 2odv_A Plectin 1, HD1; plakin 24.2 1.9E+02 0.0065 20.4 7.6 32 41-72 114-145 (235)
162 1g6u_A Domain swapped dimer; d 24.1 1E+02 0.0035 17.2 4.1 13 39-51 21-33 (48)
163 1zke_A Hypothetical protein HP 24.1 1.1E+02 0.0036 19.2 3.8 23 35-57 56-78 (83)
164 4abx_A DNA repair protein RECN 23.9 97 0.0033 20.5 3.9 33 28-60 102-134 (175)
165 3viq_B Mating-type switching p 23.8 1.4E+02 0.0047 18.6 4.4 16 35-50 12-27 (85)
166 2jo8_A Serine/threonine-protei 23.8 1.1E+02 0.0037 17.4 4.7 28 22-49 12-39 (51)
167 3eff_K Voltage-gated potassium 23.7 1.4E+02 0.0048 18.6 5.0 19 34-52 114-132 (139)
168 1nkp_B MAX protein, MYC proto- 23.5 1.2E+02 0.0041 17.7 4.6 16 16-31 15-30 (83)
169 1rtm_1 Mannose-binding protein 23.5 1.1E+02 0.0037 18.8 3.9 17 35-51 8-24 (149)
170 2j5u_A MREC protein; bacterial 22.9 38 0.0013 24.2 1.8 38 34-71 22-59 (255)
171 2zdi_C Prefoldin subunit alpha 22.7 1.6E+02 0.0055 19.0 5.0 46 29-77 96-141 (151)
172 3jsv_C NF-kappa-B essential mo 22.4 1.6E+02 0.0054 18.7 5.3 27 35-61 27-53 (94)
173 4gif_A Polycystic kidney disea 22.3 1.1E+02 0.0038 17.0 4.7 13 22-34 9-21 (45)
174 3gpv_A Transcriptional regulat 22.2 1.6E+02 0.0056 18.9 7.1 38 30-70 94-131 (148)
175 3q0x_A Centriole protein; cent 22.1 2.2E+02 0.0077 20.4 8.0 50 12-61 163-212 (228)
176 3m91_A Proteasome-associated A 21.9 1.2E+02 0.004 17.1 6.0 24 51-74 26-49 (51)
177 3s84_A Apolipoprotein A-IV; fo 21.9 2.3E+02 0.0078 20.4 9.1 41 8-48 14-54 (273)
178 2xz3_A Maltose ABC transporter 21.8 2.4E+02 0.0083 20.7 6.2 28 23-50 378-405 (463)
179 2zvf_A Alanyl-tRNA synthetase; 21.8 1.4E+02 0.0048 19.1 4.3 16 35-50 36-51 (171)
180 3tkl_B LIDA protein, substrate 21.6 20 0.00067 26.8 0.0 67 7-77 5-71 (267)
181 2pms_C Pneumococcal surface pr 21.6 1.6E+02 0.0053 19.6 4.5 17 36-52 66-82 (125)
182 1wmi_B RELB, hypothetical prot 21.5 79 0.0027 19.0 2.7 18 36-53 9-26 (67)
183 3zwh_Q Myosin-9; Ca-binding pr 21.5 67 0.0023 17.8 2.3 23 43-65 8-30 (45)
184 2vz4_A Tipal, HTH-type transcr 21.3 1.4E+02 0.0048 18.0 4.0 27 32-58 75-101 (108)
185 2fxo_A Myosin heavy chain, car 21.2 1.7E+02 0.0058 18.6 10.1 42 32-73 77-122 (129)
186 3m0d_C TNF receptor-associated 21.1 1.3E+02 0.0044 17.2 5.5 34 35-68 24-61 (65)
187 3rkg_A Magnesium transporter M 21.1 2.4E+02 0.0083 20.4 7.2 19 56-74 175-193 (261)
188 1zww_A SH3-containing GRB2-lik 20.9 2.2E+02 0.0074 19.8 7.4 50 14-63 120-174 (256)
189 1a92_A Delta antigen; leucine 20.8 1.1E+02 0.0039 17.4 3.2 19 34-52 17-35 (50)
190 2dnx_A Syntaxin-12; snare, HAB 20.8 1.7E+02 0.0059 18.6 8.9 7 69-75 102-108 (130)
191 1gk4_A Vimentin; intermediate 20.7 1.5E+02 0.005 17.7 7.2 36 18-53 6-41 (84)
192 3okq_A BUD site selection prot 20.3 2.1E+02 0.0072 19.4 6.2 35 37-73 60-94 (141)
193 1fzc_B Fibrin; blood coagulati 20.2 49 0.0017 24.9 1.9 17 36-52 35-51 (328)
194 1fme_A FSD-EY peptide; beta-BE 20.1 57 0.0019 16.4 1.6 11 68-78 15-25 (28)
195 2aze_B Transcription factor E2 20.1 1.7E+02 0.0059 18.4 4.4 23 33-55 8-30 (106)
196 1txp_A HnRNP C, heterogeneous 20.1 86 0.0029 15.9 2.3 22 53-74 4-25 (28)
197 3mq7_A Bone marrow stromal ant 20.1 2E+02 0.0069 19.1 10.7 29 49-77 72-100 (121)
No 1
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=100.00 E-value=1.8e-41 Score=224.48 Aligned_cols=80 Identities=46% Similarity=0.693 Sum_probs=61.5
Q ss_pred CchhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 1 MIVDLTSSNCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 1 ~iV~~tssncshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
+||++||+||||||||||++||+|||++||++++||++||++|+++|++||.+++++|+|||||+||++||++|.++||+
T Consensus 17 ~iv~~TSsncshQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~yL~ 96 (96)
T 1t3j_A 17 GSHMFTSANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQFLH 96 (96)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.54 E-value=0.18 Score=30.10 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
...++.++|+++...|.+-|..+-.+-++||.+..+.-.|.+-|.-+..-=..
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~ 57 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHE 57 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999988777777666555444333
No 3
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=92.79 E-value=0.46 Score=30.65 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=45.8
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHH
Q psy7799 5 LTSSNCSHQVEQELSSTFARLCQLVDRATD----------DMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 5 ~tssncshQVqqEL~~tf~rL~~~Vd~~~~----------eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F 74 (83)
.-...||+||| -|.+++.+++.... ++...+.+|.++|..|..+. .-..|-+.+.+|.+++-.-
T Consensus 10 ~li~t~s~niq-----~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~-qkeRL~~dF~~l~~~fQ~~ 83 (97)
T 1hs7_A 10 NLIETFAEQSR-----VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIH-QNGKLSADFKNLKTKYQSL 83 (97)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHH-HCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence 34678999999 89999999876542 44455555555555444442 3445667788888877777
Q ss_pred HHHh
Q psy7799 75 QEAY 78 (83)
Q Consensus 75 ~~~y 78 (83)
..+|
T Consensus 84 qr~y 87 (97)
T 1hs7_A 84 QQSY 87 (97)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 4
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=92.70 E-value=1.1 Score=27.96 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHH
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIK 69 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~ 69 (83)
...++.++|++++.-|.+.|+.+-.+=++||.+..++..|..-|.-+..
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~ 54 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFET 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999988888888887777766665555443
No 5
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=91.80 E-value=1.6 Score=27.71 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=52.3
Q ss_pred hhh-hhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 4 DLT-SSNCSHQVEQELSSTFAR-LCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 4 ~~t-ssncshQVqqEL~~tf~r-L~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
|+| +.++|.|-|++|+.-... |....+++ ..|.++|..++.+|..|..--..++.|=..+.+|.+-++.
T Consensus 10 dL~~~e~pse~YWk~lAE~Rr~AL~eaL~EN-~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 10 DLISKENPSSQYWKEVAEQRRKALYEALKEN-EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp ----CCCTTCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 589999999999875443 44444444 4588999999999999999888999998999998887765
No 6
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=91.57 E-value=1.6 Score=31.48 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 11 SHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 11 shQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
.||+-+|++..|.-.--...++...++ ..|..++.+.+..+.+-+|++-++.+|..
T Consensus 87 ~~qks~EFSD~~qTaL~eAQ~AtD~y~-------~Ainny~~Ads~~~~lekKvn~aq~kLs~ 142 (201)
T 3u0c_A 87 RQQKNLEFSDKINTLLSETEGLTRDYE-------KQINKLKNADSKIKDLENKINQIQTRLSE 142 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 466667776666655555555555554 45666888899999999999999988863
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=91.07 E-value=1.4 Score=25.79 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHH
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYL 67 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L 67 (83)
...++..+|+++..-|.+.|+.+-.+=++||.+..++..|..-|.-+
T Consensus 10 ~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F 56 (65)
T 1gl2_A 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHF 56 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999998888777776555433
No 8
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=90.11 E-value=3 Score=30.44 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=52.8
Q ss_pred hhh-hhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhc
Q psy7799 4 DLT-SSNCSHQVEQELSSTFAR-LCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYL 79 (83)
Q Consensus 4 ~~t-ssncshQVqqEL~~tf~r-L~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL 79 (83)
++| +.+.|.|-|++|+.-... |....+++ .+|..+|..++.+|..|..--..++.|=..+.+|.+-|+.+...-+
T Consensus 87 DL~~~e~Pse~YWk~lAE~RR~AL~eaLeEN-~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~ 163 (209)
T 2wvr_A 87 DLMIKENPSSQYWKEVAEKRRKALYEALKEN-EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPL 163 (209)
T ss_dssp ----CCSCCTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 555 448999999999875433 33333333 4688888888888888888888888888888888888887765543
No 9
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=90.02 E-value=2.4 Score=26.75 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHH
Q psy7799 20 STFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIK 69 (83)
Q Consensus 20 ~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~ 69 (83)
....++..+|+++..-|.+.|+.+-.+=++||.+..++..|..-|.-+..
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k 79 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFET 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999888877777665554443
No 10
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=89.73 E-value=1.9 Score=24.98 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHH
Q psy7799 20 STFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYL 67 (83)
Q Consensus 20 ~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L 67 (83)
....++..+|+++..-|.+.|+.+-.+=++||.+..++..|..-|.-+
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F 51 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999998888777766555443
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=88.67 E-value=1.3 Score=27.04 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhH
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKA 64 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa 64 (83)
...++..+|+++..-|.+-|+.+-.+=++||.+..++..|..-|
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s 59 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999988877766443
No 12
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=87.02 E-value=3 Score=24.04 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHH
Q psy7799 22 FARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYL 67 (83)
Q Consensus 22 f~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L 67 (83)
..++..+|+++..-|.+.|+.+-.+=++||.+..++..|..-|.-+
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F 49 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGF 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999988887777666555433
No 13
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=85.32 E-value=4.2 Score=24.22 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHH
Q psy7799 22 FARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIK 69 (83)
Q Consensus 22 f~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~ 69 (83)
..++..+|+++..-|.+.|+.+-.+=++||.+..++..|..-|.-+..
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~ 57 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSN 57 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999998888877777666554443
No 14
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=85.05 E-value=6.1 Score=27.07 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 17 ELSSTFAR---LCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 17 EL~~tf~r---L~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
+...+|++ |.........+|++||.++... ....++.|.+...+|++.|..|.+..
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~------~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAAKAR------ASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444 4556777777888888775544 45679999999999999999998765
No 15
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=84.86 E-value=2.4 Score=31.59 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 15 EQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEA 53 (83)
Q Consensus 15 qqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i 53 (83)
.+|+.+-|+++-..+..-...|+.++.+|..+|+.||+.
T Consensus 169 ~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 169 NAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666654333444455556666666666666554
No 16
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=78.45 E-value=4.8 Score=22.76 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 18 LSSTFARLCQLVDRATDDMHEDIKQLDSH 46 (83)
Q Consensus 18 L~~tf~rL~~~Vd~~~~eL~~ei~~L~~~ 46 (83)
|.+=||||-+.-+-++.-|+..|..|+.+
T Consensus 17 LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 17 LQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55667777777777777777777776654
No 17
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=75.82 E-value=8.7 Score=23.74 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 18 LSSTFARLCQLVDRATDDMHEDIKQLDSHLKQ 49 (83)
Q Consensus 18 L~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~ 49 (83)
|.+-|+||-+..+-++.-|+..|..|+.++..
T Consensus 19 LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 19 LQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567777777777776666666666665544
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.31 E-value=8.2 Score=23.30 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHH----HHHhhHHhhhhHHHHHHHHHHH
Q psy7799 38 EDIKQLDSHLKQVEE----ASNNAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 38 ~ei~~L~~~i~~le~----i~~~~K~lrnKa~~L~~eL~~F 74 (83)
..|++|+.++..|+. +...-..||....-|..||+.|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444443 3455567888888888888764
No 19
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=73.99 E-value=16 Score=23.89 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hHHhhhhHHHHHHHHHHHHHHhc
Q psy7799 31 RATDDMHEDIKQLDSHLKQVEEASNN----AKVLRNKAHYLIKELDMFQEAYL 79 (83)
Q Consensus 31 ~~~~eL~~ei~~L~~~i~~le~i~~~----~K~lrnKa~~L~~eL~~F~~~yL 79 (83)
....-|+..++++..+|..|+.+... ...+++...-.+.++..|..+|=
T Consensus 81 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~ 133 (142)
T 3gp4_A 81 ARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERS 133 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccc
Confidence 33344455555555555544433322 22333344456778888888774
No 20
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=73.57 E-value=5.1 Score=22.78 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 15 EQELSSTFARLCQLVDRATDDMHEDIKQLD 44 (83)
Q Consensus 15 qqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~ 44 (83)
-++|..-|..+..++-.-..||-..|++|+
T Consensus 15 L~qmq~kFq~mS~~I~~riDdM~~RIDdLE 44 (48)
T 3ci9_A 15 LQQMQDKFQTISDQIIGRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444454444444433333333333333
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.36 E-value=8.7 Score=33.14 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 34 DDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
..+..|+..|.++++.|+......+.++++..-|+.|++.-.+.|
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777777777666554
No 22
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.43 E-value=15 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le 51 (83)
++.+...|++.++.++..|..|+
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555443
No 23
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=70.64 E-value=17 Score=22.87 Aligned_cols=60 Identities=18% Similarity=0.333 Sum_probs=33.2
Q ss_pred hhh-hhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhH
Q psy7799 4 DLT-SSNCSHQVEQELSSTFAR-LCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKA 64 (83)
Q Consensus 4 ~~t-ssncshQVqqEL~~tf~r-L~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa 64 (83)
|+| +.+.|.|-|++|+.-... |....+++ .+|.++|..|+.+|..|..--..++.|=..+
T Consensus 18 DL~~~e~Pse~YWk~lAE~RR~AL~eaL~EN-~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 18 DLMIKENPSSQYWKEVAEKRRKALYEALKEN-EKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 778999999999875432 33333332 3566667777666666555444444443333
No 24
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=70.46 E-value=16 Score=24.26 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 20 STFARLCQLVDRATDDMHEDIKQLDSHLKQVEEAS 54 (83)
Q Consensus 20 ~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~ 54 (83)
..|+.|-.+-....++|+++|+...+-|+-.|.++
T Consensus 71 ~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 71 SQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666665543
No 25
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=69.02 E-value=7.5 Score=31.12 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 11 SHQVEQELSSTFAR------------LCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 11 shQVqqEL~~tf~r------------L~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
...+...|...|.= |.+....-...+++|+++|.++|+.|+.+-..-+.++ ..+-.||....+.|
T Consensus 384 ~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~---~~i~~el~~i~~~y 460 (470)
T 3ilw_A 384 VDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR---GIVRDELAEIVDRH 460 (470)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHh
Confidence 35566666666652 2333344567889999999999999999987766665 57788999999888
Q ss_pred c
Q psy7799 79 L 79 (83)
Q Consensus 79 L 79 (83)
=
T Consensus 461 g 461 (470)
T 3ilw_A 461 G 461 (470)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=67.84 E-value=23 Score=23.19 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhHHHHHHHHHHHHH
Q psy7799 14 VEQELSSTFARLCQL--VDRATDDMHEDIKQLDSHLKQVEEASNNAKVLR----NKAHYLIKELDMFQE 76 (83)
Q Consensus 14 VqqEL~~tf~rL~~~--Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lr----nKa~~L~~eL~~F~~ 76 (83)
.++|.+.||.+..+. -+-++.+|-.|--+|+++..++|.=.+++..+. .|..-|+.|++.+..
T Consensus 11 l~KdFSe~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 11 LQRDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp ---CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 356677888776543 455678898999999999888876655544433 477889999988753
No 27
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=67.76 E-value=10 Score=28.21 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHhhhhHHHH
Q psy7799 14 VEQELSSTFARLCQLVD---RATDDMHEDIKQLDSHLKQVEEA-SNNAKVLRNKAHYL 67 (83)
Q Consensus 14 VqqEL~~tf~rL~~~Vd---~~~~eL~~ei~~L~~~i~~le~i-~~~~K~lrnKa~~L 67 (83)
+.+.|...|...+++++ ...+.|++||.+|++.++.+.+. ..+.+.|+....|.
T Consensus 172 ~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~ 229 (315)
T 2ve7_A 172 LQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLY 229 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 34444444444333333 34456777777777777766665 44555555444333
No 28
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=67.17 E-value=15 Score=20.80 Aligned_cols=33 Identities=12% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 20 STFARLCQLVDRATDDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 20 ~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~ 52 (83)
..+..+....+.....+-..|+++..+|+.||+
T Consensus 13 ~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 13 TLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 344444444555555555566666666666654
No 29
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.26 E-value=20 Score=21.95 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q psy7799 66 YLIKELDMFQE 76 (83)
Q Consensus 66 ~L~~eL~~F~~ 76 (83)
.|.++|+.|..
T Consensus 58 ~LqseLDKfrS 68 (72)
T 3nmd_A 58 MLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhhc
Confidence 56677887754
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.78 E-value=31 Score=28.39 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=12.5
Q ss_pred HHHHHHHHhhHHhhhhHHHHHHHHH
Q psy7799 48 KQVEEASNNAKVLRNKAHYLIKELD 72 (83)
Q Consensus 48 ~~le~i~~~~K~lrnKa~~L~~eL~ 72 (83)
.+|-.+|+.+..+|-|..-||...+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554443
No 31
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=65.65 E-value=24 Score=22.63 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy7799 10 CSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKV 59 (83)
Q Consensus 10 cshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~ 59 (83)
-+.|.+.|+.-+=.-|..+++.+. ...+..+..+...+|.+++.+..
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~ 65 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELAT 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777766 44455566666777776666655
No 32
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=65.37 E-value=17 Score=29.38 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 25 LCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 25 L~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
|.+....-...+.+|+++|.++|+.|+.+-..-+.++ ..+-.||..+.+.|=.
T Consensus 448 L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~---~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 448 LYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALL---NVIKEELNEIKKKFKS 500 (514)
T ss_dssp GGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHHCC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHcCC
Confidence 3333344567888999999999999998877666555 5678899999999843
No 33
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=64.69 E-value=17 Score=27.23 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHhhhhHHHHHHHHHHHHH
Q psy7799 30 DRATDDMHEDIKQLDSHLKQVEEAS---NNAKVLRNKAHYLIKELDMFQE 76 (83)
Q Consensus 30 d~~~~eL~~ei~~L~~~i~~le~i~---~~~K~lrnKa~~L~~eL~~F~~ 76 (83)
+...+++++++.+|.++|..++..- ..+|+.+||-..|+.+++.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 295 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQ 295 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888887776322 2345666777777777776543
No 34
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=64.21 E-value=24 Score=22.10 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7799 12 HQVEQELSSTFARLCQLV 29 (83)
Q Consensus 12 hQVqqEL~~tf~rL~~~V 29 (83)
+||+++....-.+|....
T Consensus 9 ~~V~~D~~~ql~~l~~~~ 26 (95)
T 2c5k_T 9 QQVVKDTKEQLNRINNYI 26 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688888888877777755
No 35
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=63.93 E-value=15 Score=31.04 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 24 RLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 24 rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
||.+....-...+++|+++|.++|..|+.+-..-+.++ ..+-.||..+.+.|=.
T Consensus 689 rL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~---~~i~~el~~~~~~yg~ 742 (767)
T 2xkj_E 689 KLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLK---NLIISELKEDAKKFGD 742 (767)
T ss_dssp CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHhCC
Confidence 55566666677899999999999999999877766665 5678899999998843
No 36
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=63.21 E-value=17 Score=20.12 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 25 LCQLVDRATDDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 25 L~~~Vd~~~~eL~~ei~~L~~~i~~l 50 (83)
|-..+..-+.+|++.|..|+.+++.|
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666555444
No 37
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=63.13 E-value=5.9 Score=19.98 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=12.6
Q ss_pred HHHHHHHHhhHHhhhhH
Q psy7799 48 KQVEEASNNAKVLRNKA 64 (83)
Q Consensus 48 ~~le~i~~~~K~lrnKa 64 (83)
..||.+|.++.+||.|.
T Consensus 8 keledlqerlrklrkkl 24 (27)
T 3twe_A 8 KELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34677888888888764
No 38
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=63.06 E-value=17 Score=29.28 Aligned_cols=49 Identities=10% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
...-...+.+|+++|.++|+.|+.+-..-+.++ ..+-.||..+.+.|=.
T Consensus 428 t~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~---~~i~~el~~i~~~y~~ 476 (496)
T 2nov_A 428 TNTDVVVLQEEEAELREKIAMLAAIIGDERTMY---NLMKKELREVKKKFAT 476 (496)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHH---HHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHhCC
Confidence 344567888999999999999998876655554 5678899999999843
No 39
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=62.83 E-value=30 Score=22.78 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=30.7
Q ss_pred hHHHHHHHH-------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy7799 11 SHQVEQELS-------STFARLCQ-----------LVDRATDDMHEDIKQLDSHLKQVEEASNNAK 58 (83)
Q Consensus 11 shQVqqEL~-------~tf~rL~~-----------~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K 58 (83)
=.+|++|.. +.|.++.. ..+.+.+||+..+..++.+++-|+....-+.
T Consensus 29 F~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 29 FFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777654 44555542 2455677777777777777777777666544
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.15 E-value=39 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=21.4
Q ss_pred HHHHHHHHHH-HHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 39 DIKQLDSHLK-QVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 39 ei~~L~~~i~-~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
..++|+.+++ .|+...++.+.|+.|..-|..|++....-|
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444332 345555556666666666666666655444
No 41
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=61.50 E-value=27 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLR 61 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lr 61 (83)
-..-|...|+....|-++.|.++-.++=++|.--.++|+|-
T Consensus 59 NItNLtdsV~~L~dDAed~~~~~~~~~~~~~~~~~~~~~~~ 99 (107)
T 2wps_A 59 NINNLSDSITTLMKQIEDKIEEILSKIYHIENEIARIKKLI 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999999999998888887764
No 42
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=61.46 E-value=13 Score=30.14 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 24 RLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 24 rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
||.+....-...+.+|.++|.++|..|+.|-..-..++ ..+-.||..-.+.|=.
T Consensus 432 rL~rLt~le~~ki~~E~~~l~~~i~~l~~iL~~~~~~~---~~i~~el~~i~~~~g~ 485 (500)
T 3lpx_A 432 QLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLM---EVICEELVAIRDEFGD 485 (500)
T ss_dssp BGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHHCC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHhCC
Confidence 45555556678899999999999999999988877777 4778999999998843
No 43
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=61.05 E-value=13 Score=23.99 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=19.4
Q ss_pred HHHHHHHhhHHhhhhHHHHHHHHHHHH
Q psy7799 49 QVEEASNNAKVLRNKAHYLIKELDMFQ 75 (83)
Q Consensus 49 ~le~i~~~~K~lrnKa~~L~~eL~~F~ 75 (83)
.++....+.+.||.+...|+.||+++.
T Consensus 90 ~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 90 KYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666778888888888888763
No 44
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.40 E-value=17 Score=20.71 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~le~ 52 (83)
|.+.-..+|+.=|..|..+|.+||.
T Consensus 21 qlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666553
No 45
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=58.75 E-value=51 Score=25.11 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=10.4
Q ss_pred hHHhhhhHHHHHHHHHH
Q psy7799 57 AKVLRNKAHYLIKELDM 73 (83)
Q Consensus 57 ~K~lrnKa~~L~~eL~~ 73 (83)
...|+.+=..|..||-.
T Consensus 131 ~ndLlDqRD~ll~eLS~ 147 (463)
T 2d4y_A 131 PNDLLDQRDQLVSELNK 147 (463)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHHHh
Confidence 34566666777777654
No 46
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.33 E-value=8.5 Score=19.54 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 33 TDDMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 33 ~~eL~~ei~~L~~~i~~le 51 (83)
-..|+.||..|+-+|..||
T Consensus 9 narlkqeiaaleyeiaale 27 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 3457788888888888776
No 47
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=55.95 E-value=34 Score=21.23 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=45.8
Q ss_pred hhhh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 4 DLTS-SNCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 4 ~~ts-sncshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
|+|| .+=|.|-|++|+.-...-=..+=.=-..|-.+|.++..+|..|..--..++.+-+-+.+|..-|+.
T Consensus 6 dL~~~e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 6 DLISKENPSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp ----CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 567888999998754432222222235677888888888888888777788877777777766654
No 48
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=54.64 E-value=19 Score=30.31 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhc
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYL 79 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL 79 (83)
...-...+++|.++|.++|+.|+.+-..-+.++ ..+-.||..-.+.|=
T Consensus 400 t~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~---~~i~~EL~~i~~kyg 447 (716)
T 1zvu_A 400 AKLEEMKIRGEQSELEKERDQLQGILASERKMN---NLLKKELQADAQAYG 447 (716)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHhC
Confidence 344567899999999999999999988877776 567888888888883
No 49
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=54.36 E-value=20 Score=21.90 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=23.1
Q ss_pred HHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 50 VEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 50 le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
++.+..+.|+|+.||+-...+|-+-.+. |+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEd-LP 34 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAED-LP 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcc-ch
Confidence 4556667788888898888888888876 54
No 50
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=54.07 E-value=29 Score=22.69 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVL 60 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~l 60 (83)
||....++..+|..+..+|..++.-..+.|+|
T Consensus 74 ld~svt~i~~~I~~lt~~i~~~~~~i~~~~~~ 105 (106)
T 2yny_A 74 LNTSMKQIEDKIEEILSKIYHIENEIARIKKL 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666666777777777766655555543
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.77 E-value=71 Score=24.28 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=10.9
Q ss_pred HHHhhHHhhhhHHHHHHHHHHHHH
Q psy7799 53 ASNNAKVLRNKAHYLIKELDMFQE 76 (83)
Q Consensus 53 i~~~~K~lrnKa~~L~~eL~~F~~ 76 (83)
+....+.++.+...++.++..|.+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~ 530 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRT 530 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHH
Confidence 333334444444455555554443
No 52
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=53.45 E-value=30 Score=19.92 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 30 DRATDDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 30 d~~~~eL~~ei~~L~~~i~~le~ 52 (83)
+.--.+|+..|..|++.|.-||.
T Consensus 30 endnanlekdianlekdianler 52 (56)
T 3he4_A 30 ENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888774
No 53
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.12 E-value=36 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=4.7
Q ss_pred hhhHHHHHHHHH
Q psy7799 61 RNKAHYLIKELD 72 (83)
Q Consensus 61 rnKa~~L~~eL~ 72 (83)
+.+...+...|.
T Consensus 30 ~~~i~~l~~~l~ 41 (112)
T 1l8d_A 30 KNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 54
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.00 E-value=84 Score=24.94 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7799 28 LVDRATDDMHEDIKQL 43 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L 43 (83)
.|+...++|++.+.++
T Consensus 97 ~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHH
Confidence 3444444444444333
No 55
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=52.86 E-value=63 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=21.4
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 8 SNCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLK 48 (83)
Q Consensus 8 sncshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~ 48 (83)
...+.+|+++|...-.+|.--.++.+.-+...+.+|..++.
T Consensus 36 ~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~ 76 (273)
T 3s84_A 36 NEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLT 76 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455556666655555555555555444444444444443
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.53 E-value=36 Score=20.48 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 16 QELSSTFARLCQLVDRATD 34 (83)
Q Consensus 16 qEL~~tf~rL~~~Vd~~~~ 34 (83)
|++...|.+|.++......
T Consensus 4 Q~~i~~f~~lq~~~~~l~~ 22 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISV 22 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677778888777665443
No 57
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=52.49 E-value=13 Score=23.98 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~le 51 (83)
+.|...+.+|..+++.+.
T Consensus 19 ~~l~~~~~~l~~~l~~~~ 36 (182)
T 3kqg_A 19 SALNTKIRALQGSLENMS 36 (182)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 58
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=51.95 E-value=40 Score=20.83 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy7799 31 RATDDMHEDIKQLDSHLKQVEEASNNAK 58 (83)
Q Consensus 31 ~~~~eL~~ei~~L~~~i~~le~i~~~~K 58 (83)
....-|.+.+.+-..+|+.|-..+..++
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 59
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=51.92 E-value=24 Score=24.58 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 17 ELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 17 EL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
-|+.-|.-.--...+.+ +.++..|..++..+..++.+-+|++-++.+|..
T Consensus 45 qlS~eFqtal~eAq~At-------d~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~ 94 (158)
T 3tul_A 45 QVSKEFQTALGEAQEAT-------DLYEASIKKTDTAKSVYDAATKKLTQAQNKLQS 94 (158)
T ss_dssp --CCTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc
Confidence 35555553333333344 445555667888888888888888888888753
No 60
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=51.23 E-value=38 Score=20.37 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~l 50 (83)
++.+..+|+..++.++..|..|
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~l 84 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTI 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444433
No 61
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=51.19 E-value=72 Score=25.72 Aligned_cols=18 Identities=0% Similarity=-0.095 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy7799 60 LRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 60 lrnKa~~L~~eL~~F~~~ 77 (83)
+..+..-++..|+.+...
T Consensus 674 ~~~~~~~~~~~~~~~~~~ 691 (695)
T 2j69_A 674 VIAQLQKIEAAYSNLLAY 691 (695)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444555555666665543
No 62
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.43 E-value=25 Score=21.91 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVL 60 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~l 60 (83)
|.+--.-|++.|++|..++.+||.=-+-+|.+
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444568999999999999998765555543
No 63
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=49.71 E-value=35 Score=25.38 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=37.2
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhh
Q psy7799 8 SNCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLK-QVEEASNNAKVLR 61 (83)
Q Consensus 8 sncshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~-~le~i~~~~K~lr 61 (83)
.....++-++......+|...++++...|.--..+|...++ .+|.+..++..+.
T Consensus 95 ~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~ 149 (307)
T 2l7b_A 95 EETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHL 149 (307)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777777777777666 5666666555443
No 64
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=49.42 E-value=17 Score=30.38 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 11 SHQVEQELSSTFA------------RLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 11 shQVqqEL~~tf~------------rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
...+...|...|. ||.+....-...+.+|+++|.++|+.|+.+-..-+.++ ..+-.||....+.|
T Consensus 605 ~~~a~~~L~~~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~---~~i~~el~~i~~~y 681 (692)
T 2xcs_B 605 DKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLL---QLVRDELTEIRDRF 681 (692)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHc
Confidence 3456667776664 22222334467899999999999999999988877776 37888999999988
Q ss_pred cc
Q psy7799 79 LV 80 (83)
Q Consensus 79 L~ 80 (83)
=.
T Consensus 682 g~ 683 (692)
T 2xcs_B 682 GD 683 (692)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 65
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=49.38 E-value=68 Score=23.96 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHh
Q psy7799 20 STFARLCQLVDRATDDM---HEDIKQLDSHLKQVEEASNNAKVL 60 (83)
Q Consensus 20 ~tf~rL~~~Vd~~~~eL---~~ei~~L~~~i~~le~i~~~~K~l 60 (83)
.-|..|..+|+.+.+++ ++.|.++...|.+||.-..+.|+|
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666665543 666777777777777666666554
No 66
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.95 E-value=58 Score=25.31 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHhhhhHHHHHHHHHHHH
Q psy7799 30 DRATDDMHEDIKQLDSHLK----QVEEASNNAKVLRNKAHYLIKELDMFQ 75 (83)
Q Consensus 30 d~~~~eL~~ei~~L~~~i~----~le~i~~~~K~lrnKa~~L~~eL~~F~ 75 (83)
+...++|.++|.+|+..|. .+..++..++.+++|...|...+....
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444567777777666444 334455555566677777766665544
No 67
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=48.60 E-value=72 Score=24.04 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7799 30 DRATDDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 30 d~~~~eL~~ei~~L~~~i~~l 50 (83)
+.....|+..++.+..+|+.|
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 68
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=48.27 E-value=37 Score=19.39 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 11 SHQVEQELSSTFARLCQLVDRATDDMHE 38 (83)
Q Consensus 11 shQVqqEL~~tf~rL~~~Vd~~~~eL~~ 38 (83)
..++++.|..--..+...|+....||++
T Consensus 20 ~~eik~~L~~QQ~g~~~Li~ivk~DleD 47 (51)
T 3t98_A 20 LREIKQHLKQQQEGLSHLISIIKDDLED 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3688888888888999999998888875
No 69
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.03 E-value=28 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=21.9
Q ss_pred HHHHHhhHHhhhhHHHHHHHHHHHHH
Q psy7799 51 EEASNNAKVLRNKAHYLIKELDMFQE 76 (83)
Q Consensus 51 e~i~~~~K~lrnKa~~L~~eL~~F~~ 76 (83)
+.+...++.+|.+...|..||+.+..
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667889999999999999998764
No 70
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=47.68 E-value=37 Score=19.22 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHH
Q psy7799 16 QELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYL 67 (83)
Q Consensus 16 qEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L 67 (83)
-+|+.+-.||.......-.|++..-+-|+.=-...|.+..+++.-.+|+..|
T Consensus 12 d~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 12 DALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777777777666665555555666677766666665543
No 71
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=47.61 E-value=25 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQ 49 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~ 49 (83)
.+..+-.+|++.|++|..-|..
T Consensus 40 El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 40 EIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 72
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=46.62 E-value=44 Score=19.86 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 50 VEEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 50 le~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
.+........|..|...|+.+|+...+.
T Consensus 36 ~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 36 SKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777766544
No 73
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=45.73 E-value=43 Score=19.44 Aligned_cols=40 Identities=18% Similarity=0.422 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHh
Q psy7799 21 TFARLCQLVDRATDD---MHEDIKQLDSHLKQVEEASNNAKVL 60 (83)
Q Consensus 21 tf~rL~~~Vd~~~~e---L~~ei~~L~~~i~~le~i~~~~K~l 60 (83)
.|..|-+||+....| |..|+..=+.++.+||.-++..|.+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 467788888876654 6667777777788888777766654
No 74
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.58 E-value=38 Score=18.80 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHH
Q psy7799 41 KQLDSHLKQVEEASNNAKVLRNKAHYLIKELD 72 (83)
Q Consensus 41 ~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~ 72 (83)
++|..-|+.||+--..+|.|+.-..+--.||+
T Consensus 6 kelknyiqeleernaelknlkehlkfakaele 37 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 44555566666666666666654444444444
No 75
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=45.31 E-value=30 Score=26.09 Aligned_cols=38 Identities=13% Similarity=0.383 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy7799 15 EQELSSTFARLCQLVDR----ATDDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 15 qqEL~~tf~rL~~~Vd~----~~~eL~~ei~~L~~~i~~le~ 52 (83)
+.+|...++.+...++. ..+.|...+..|..+|+.||.
T Consensus 8 ~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~ 49 (323)
T 1lwu_B 8 QKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEE 49 (323)
T ss_dssp HHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554432 222344444444444444443
No 76
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=45.25 E-value=40 Score=19.02 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 27 QLVDRATDDMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 27 ~~Vd~~~~eL~~ei~~L~~~i~~le 51 (83)
.+||.+..++.+++..|.+++..|.
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~ 47 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELE 47 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776666666655555544
No 77
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.89 E-value=1.1e+02 Score=23.77 Aligned_cols=46 Identities=7% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 33 TDDMHEDIKQLDSHLKQV-------EEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 33 ~~eL~~ei~~L~~~i~~l-------e~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
..+|+.+.+.++++|..+ +.+..+.+.|+.+..-|+.++..-.+..
T Consensus 47 ~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 47 INRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777653 5667777777777777777777655543
No 78
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.25 E-value=44 Score=21.88 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 9 NCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 9 ncshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~l 50 (83)
.+|.|--++|..+|.-.+..|..-...|...-++++.++.+|
T Consensus 55 q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 55 QASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777666666666655555444433
No 79
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=44.13 E-value=59 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 36 MHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 36 L~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
++.+|..|..++..+.. .+++|.-.+..|+++|.+.
T Consensus 40 ~~~~~~~l~~~l~e~~~------~~~d~~lR~~Ae~eN~rkR 75 (197)
T 1dkg_A 40 RDEKVANLEAQLAEAQT------RERDGILRVKAEMENLRRR 75 (197)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHH
Confidence 45556666666555433 2556666677777777653
No 80
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=44.00 E-value=61 Score=20.71 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
++.+...+...|++|...|.+.+....+.-.|+ .+.+.|.+.|
T Consensus 14 aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk-------~Qv~IY~~DF 56 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQHKIVMETVPVLK-------AQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 444555566677777777766665555444443 4444555444
No 81
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.87 E-value=59 Score=21.12 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~ 52 (83)
+|..++.+|...++.||+
T Consensus 22 ~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555553
No 82
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.83 E-value=53 Score=20.37 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHhhhhHHHHHHHHH
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQ----VEEASNNAKVLRNKAHYLIKELD 72 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~----le~i~~~~K~lrnKa~~L~~eL~ 72 (83)
.++.+.+||-..+++|..+-.. ++.++...-.++.|...|+.||.
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777666543 34445555556666677777664
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.18 E-value=1e+02 Score=22.94 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
|=..+..|+.+..+-.++|+.| ..+.++|-.|...++.|.++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 427 VMALMASLDAEKAQGQKKVEEL---EGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666655444433 34555555566555555543
No 84
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=43.09 E-value=59 Score=20.33 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHhhHHhhhhHHHHHHHHHHHHHHhccc
Q psy7799 53 ASNNAKVLRNKAHYLIKELDMFQEAYLVN 81 (83)
Q Consensus 53 i~~~~K~lrnKa~~L~~eL~~F~~~yL~~ 81 (83)
+....-.|=.|..-|-.+++...++||+-
T Consensus 56 ~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 56 IYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555678888889999999999853
No 85
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=43.07 E-value=1.2 Score=29.23 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVL 60 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~l 60 (83)
...++..+|++++.-|.+.|+.+-.+=++||.+..++..|
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L 73 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 73 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3567888999999999999999888888877665544433
No 86
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.05 E-value=1.6e+02 Score=25.26 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=8.7
Q ss_pred HHHhhHHhhhhHHHHHHHHHH
Q psy7799 53 ASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 53 i~~~~K~lrnKa~~L~~eL~~ 73 (83)
+..+...+..+..-++.+|+.
T Consensus 918 l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 918 LAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433
No 87
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=43.00 E-value=71 Score=21.16 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEAS 54 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~ 54 (83)
.|..|-..-....++|+.+|+....-|.-.+.|+
T Consensus 72 eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~Iq 105 (119)
T 2avr_X 72 QYQELASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666666555555555554
No 88
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.95 E-value=36 Score=17.74 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy7799 36 MHEDIKQLDSHLKQV 50 (83)
Q Consensus 36 L~~ei~~L~~~i~~l 50 (83)
|+.||..|.++|..|
T Consensus 7 lkqeiaalkkeiaal 21 (33)
T 4dzn_A 7 LKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555443
No 89
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.54 E-value=69 Score=25.19 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 23 ARLCQLVDRATDDMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 23 ~rL~~~Vd~~~~eL~~ei~~L~~~i~~le 51 (83)
+||.-.++.+.++++..|..|...+..+-
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRDSLFNYQ 80 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 56777777777888888877777776663
No 90
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.12 E-value=57 Score=19.81 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 16 QELSSTFARLCQLVDRATD 34 (83)
Q Consensus 16 qEL~~tf~rL~~~Vd~~~~ 34 (83)
|++...|.+|.++......
T Consensus 9 Q~~i~~~~~l~~~~~~l~~ 27 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQ 27 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677788888887765543
No 91
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=41.93 E-value=46 Score=19.90 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy7799 17 ELSSTFARLCQLVDR 31 (83)
Q Consensus 17 EL~~tf~rL~~~Vd~ 31 (83)
.|..-|..|...|-.
T Consensus 20 ~in~~f~~L~~lvP~ 34 (82)
T 1am9_A 20 SINDKIIELKDLVVG 34 (82)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccC
Confidence 367777777777654
No 92
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=41.61 E-value=72 Score=21.36 Aligned_cols=30 Identities=10% Similarity=0.403 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQVEEASNNA 57 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~ 57 (83)
++......|...+++|+.+|.+|+.-..+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~ 40 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKV 40 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776655444
No 93
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.37 E-value=45 Score=18.47 Aligned_cols=17 Identities=12% Similarity=0.518 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~l 50 (83)
.||-..|+..+.+|+.-
T Consensus 5 ~~l~qkI~kVdrEI~Kt 21 (42)
T 2l5g_B 5 EELIQNMDRVDREITMV 21 (42)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 94
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=40.95 E-value=42 Score=18.49 Aligned_cols=19 Identities=5% Similarity=0.300 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~le~ 52 (83)
.+|+.+|+.|+..+..|+.
T Consensus 47 ~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555543
No 95
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=40.68 E-value=39 Score=22.94 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 18 LSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 18 L~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~ 52 (83)
+..-++.+...+..+..+-+.+|.+|+++|..+++
T Consensus 89 i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~ 123 (160)
T 2cly_B 89 VDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN 123 (160)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445556666666666777777777777666654
No 96
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=40.62 E-value=64 Score=20.03 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 25 LCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 25 L~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
....|+....|.++=|++|+-++..+..-. + ..+.+|..--.++|+.+...|
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~s~-R-~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAPLTF-R-NPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-H-HHHHHHHHHHHHHHHHHHhhc
Confidence 444444444455555555555555443211 2 245567777777777766544
No 97
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.60 E-value=61 Score=19.74 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy7799 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLR 61 (83)
Q Consensus 21 tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lr 61 (83)
--+||..+.|......++==...+.++..=..+.+....||
T Consensus 15 e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lr 55 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 55 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555444444444444444444444444444444
No 98
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.51 E-value=41 Score=17.77 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy7799 34 DDMHEDIKQLDSHLKQVEEASNNAK 58 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~le~i~~~~K 58 (83)
+.|++.+.+|-.++..|+.=-.+++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555554444433
No 99
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=40.16 E-value=61 Score=24.36 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 24 RLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 24 rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
.+.-.+++..+-++.-++.... ..|..++..+..|+.|...|+..+..
T Consensus 6 ~~~~~le~~~~~ik~~~~~~~~--~~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 6 NAQKEIENRYKEVKIRIESTVA--GSLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp -CHHHHHHHTHHHHHHHHTTTH--HHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554431111 14455666677778888888777753
No 100
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=39.85 E-value=58 Score=19.31 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHH
Q psy7799 17 ELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLI 68 (83)
Q Consensus 17 EL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~ 68 (83)
+|+.+-.||.......-.|++..-+-|+.==..+|.+..+++.-.+|+..+.
T Consensus 23 ~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~ 74 (82)
T 2nps_D 23 LVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVS 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777776666655555556666676666666665543
No 101
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=39.55 E-value=90 Score=21.38 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 13 QVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHL 47 (83)
Q Consensus 13 QVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i 47 (83)
++.+++.....+|..-++..+..|.-=..+|...+
T Consensus 92 ~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l 126 (191)
T 1nfn_A 92 RLSKELQAAQARLGADMEDVCGRLVQYRGEVQAML 126 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444444444444444444444444443333
No 102
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=38.93 E-value=44 Score=17.60 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 12 HQVEQELSSTFARLCQLVDRATDDMHEDI 40 (83)
Q Consensus 12 hQVqqEL~~tf~rL~~~Vd~~~~eL~~ei 40 (83)
-|+..|++-..+...+.+--+....+.||
T Consensus 5 aqikkeiayllakikaeilaalkkikqei 33 (35)
T 1rh4_A 5 AQIKKEIAYLLAKIKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888877777666666655555
No 103
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=38.03 E-value=38 Score=24.25 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy7799 35 DMHEDIKQLDSHLKQVEEASNNAKVLR 61 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~i~~~~K~lr 61 (83)
+|+.|+.+|..+...++.+..+...||
T Consensus 30 ~Lk~e~~~l~~~~~~~~~l~~En~rLr 56 (255)
T 2j5u_A 30 HLKERLEELAQLESEVADLKKENKDLK 56 (255)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776666666665
No 104
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=37.80 E-value=39 Score=16.99 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7799 36 MHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 36 L~~ei~~L~~~i~~le~ 52 (83)
|...+++|++++..||+
T Consensus 6 ldanvkrlekevgkleg 22 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhhhhh
Confidence 34455666666666654
No 105
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.61 E-value=91 Score=20.86 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 13 QVEQELSSTFARLCQLVD-----------RATDDMHEDIKQLDSHLKQVEEASN 55 (83)
Q Consensus 13 QVqqEL~~tf~rL~~~Vd-----------~~~~eL~~ei~~L~~~i~~le~i~~ 55 (83)
|..+||...-.||..-=. +.-....+||..|.++|++|-..+.
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777766666654321 2345778899999999999887765
No 106
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.31 E-value=1.5e+02 Score=23.42 Aligned_cols=45 Identities=9% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 34 DDMHEDIKQLDSHLKQV-------EEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~l-------e~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
.+|..+.+.++++|..+ +.+..+.+.|+.+..-|+.++....+..
T Consensus 50 ~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 50 DEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666553 4566677777777777777766655443
No 107
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=37.24 E-value=1.1e+02 Score=21.93 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhHHhhhh-----------HHHHHHHHHHHHHH
Q psy7799 47 LKQVEEASNNAKVLRNK-----------AHYLIKELDMFQEA 77 (83)
Q Consensus 47 i~~le~i~~~~K~lrnK-----------a~~L~~eL~~F~~~ 77 (83)
-+.||+.++.+|++|.| .+-..+||+.|..+
T Consensus 132 ~~~leK~~~elkK~~rksqk~~~k~~e~v~~~q~el~~f~~~ 173 (222)
T 3ok8_A 132 AANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSE 173 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhHHHHHHHH
Confidence 34778888888887533 23466778888654
No 108
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=37.19 E-value=27 Score=21.83 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=21.8
Q ss_pred HHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 50 VEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 50 le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
++.+..+.|+|+.||+....+|-+-.+. |+
T Consensus 17 i~eLkkevkKL~~~A~q~kmdLHDLaEd-LP 46 (81)
T 3csx_A 17 VADLKKKVRKLNSKAGQMKMDLHDLAEG-LP 46 (81)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-ch
Confidence 3445566677888888888888888877 54
No 109
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.60 E-value=67 Score=19.65 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=15.4
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHhc
Q psy7799 56 NAKVLRNKAHYLIKELDMFQEAYL 79 (83)
Q Consensus 56 ~~K~lrnKa~~L~~eL~~F~~~yL 79 (83)
.-.+||.+...||..+......++
T Consensus 33 sQ~KLKqRit~LE~~~~~~~~~~~ 56 (74)
T 3swf_A 33 MQQKLKQRLTKVEKFLKPLIDTEF 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCch
Confidence 334566788888887766555543
No 110
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.45 E-value=1.2e+02 Score=23.81 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7799 37 HEDIKQLDSHLKQVEE 52 (83)
Q Consensus 37 ~~ei~~L~~~i~~le~ 52 (83)
+.-|+.+..+|++||.
T Consensus 140 q~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 140 QKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 111
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.23 E-value=19 Score=20.28 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~l 50 (83)
.+|+.+|+.|+..|+.|
T Consensus 52 ~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 52 EAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455444444433
No 112
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=35.16 E-value=74 Score=19.70 Aligned_cols=53 Identities=11% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHh
Q psy7799 24 RLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78 (83)
Q Consensus 24 rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~y 78 (83)
.....|+....|.++=|++|+-++..+.. ..+ ..+.+|..---++|+.+...|
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~p~-~~R-~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREIPP-QSR-GMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666655555531 111 245567777777777777666
No 113
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=34.98 E-value=8.1 Score=28.93 Aligned_cols=27 Identities=11% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 12 HQVEQELSSTFARLCQLVDRATDDMHE 38 (83)
Q Consensus 12 hQVqqEL~~tf~rL~~~Vd~~~~eL~~ 38 (83)
.++..||...|.-+.+..|....+++.
T Consensus 5 ~~~~~~~~~~~~~~k~~~~~~~~~~~~ 31 (385)
T 3p8q_A 5 ALIQKAIEESQQKMTQLFDAQKAEIES 31 (385)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999888888877666554
No 114
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=33.97 E-value=99 Score=20.23 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=9.5
Q ss_pred HHHHhhHHhhhhHHHHHHHHHHHH
Q psy7799 52 EASNNAKVLRNKAHYLIKELDMFQ 75 (83)
Q Consensus 52 ~i~~~~K~lrnKa~~L~~eL~~F~ 75 (83)
.++...+.|..+-.-|..+|..+.
T Consensus 54 eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 54 ELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433334444444333
No 115
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=33.73 E-value=49 Score=21.59 Aligned_cols=27 Identities=7% Similarity=0.327 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhHHhh
Q psy7799 35 DMHEDIKQLDSHLKQVEEA-SNNAKVLR 61 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~i-~~~~K~lr 61 (83)
+|+.+|..+++++++|-++ ..++..+|
T Consensus 8 ~l~~qi~~~ekr~~RLKevF~~ks~eFR 35 (123)
T 4dzo_A 8 ELKKQVESAELKNQRLKEVFQTKIQEFR 35 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666665443 33444444
No 116
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=33.28 E-value=82 Score=19.09 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy7799 16 QELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAK 58 (83)
Q Consensus 16 qEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K 58 (83)
.+|+.+-.||....-..-.|++.+-+.|+.=-...|.+..+.+
T Consensus 33 d~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~ 75 (87)
T 1l4a_D 33 KEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRID 75 (87)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777666666655554444333333344444433
No 117
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=33.03 E-value=74 Score=21.65 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7799 12 HQVEQELSSTFARLCQLVDR 31 (83)
Q Consensus 12 hQVqqEL~~tf~rL~~~Vd~ 31 (83)
.+++.+|+++..||-..++.
T Consensus 76 ~~ae~~Ls~aL~~L~av~E~ 95 (171)
T 2etd_A 76 AQADAELSSALSRLLAIAEN 95 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 46788899999999887744
No 118
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=32.93 E-value=68 Score=18.07 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHH
Q psy7799 16 QELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAH 65 (83)
Q Consensus 16 qEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~ 65 (83)
.+|+++-.||....-..-.|++.+-+-|+.=-...|.+..+++.-..|+.
T Consensus 13 d~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 13 EQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45677777777777766666666655555544555555555555544443
No 119
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=32.86 E-value=95 Score=19.68 Aligned_cols=45 Identities=24% Similarity=0.486 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhcc
Q psy7799 30 DRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYLV 80 (83)
Q Consensus 30 d~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~ 80 (83)
|.-...-+++.++|.+.+++.+..... -.-||-..+.--.+.||.
T Consensus 44 Dqkr~kFee~fe~l~s~l~~f~e~a~e------~vp~L~~~i~vle~~~~~ 88 (94)
T 3fx7_A 44 DARRDKFSEVLDNLKSTFNEFDEAAQE------QIAWLKERIRVLEEDYLE 88 (94)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHH------HhHHHHHHHHHhHHHHHH
Confidence 344455556666666666666554333 223444445555555653
No 120
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=32.80 E-value=68 Score=21.71 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q psy7799 22 FARLCQLVDRATD 34 (83)
Q Consensus 22 f~rL~~~Vd~~~~ 34 (83)
|..|++.|+.+.+
T Consensus 61 Yk~Lhaev~~v~~ 73 (140)
T 1xaw_A 61 YKSLQSVLDEINK 73 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577888877754
No 121
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.71 E-value=1e+02 Score=23.97 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=5.8
Q ss_pred HHhhHHhhhhHHHHH
Q psy7799 54 SNNAKVLRNKAHYLI 68 (83)
Q Consensus 54 ~~~~K~lrnKa~~L~ 68 (83)
...+|.+..+..-|+
T Consensus 83 tq~skkml~~~~~~e 97 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYE 97 (409)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444443333333
No 122
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=32.59 E-value=1.3e+02 Score=21.34 Aligned_cols=33 Identities=12% Similarity=0.396 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy7799 27 QLVDRATDDMHEDIKQLDSHLKQVEEASNNAKV 59 (83)
Q Consensus 27 ~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~ 59 (83)
.++....+.|...+++|+.+|..|+.-..+.+.
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~ 42 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKR 42 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888776665543
No 123
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=32.43 E-value=1.3e+02 Score=21.30 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhccc
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYLVN 81 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL~~ 81 (83)
.|+.+....-+|-.-|..+...|=.=...+|.||.-..-=+.-+-.|-..||++
T Consensus 91 RvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~ 144 (190)
T 3thf_A 91 QTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSA 144 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 345555555777788888888888888889999988888888888888888875
No 124
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.38 E-value=87 Score=18.80 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHH
Q psy7799 16 QELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAH 65 (83)
Q Consensus 16 qEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~ 65 (83)
.+|+.+-.||....-..-.|++.+-+-|+.=-...|.+..+++.-..|+.
T Consensus 32 d~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~ 81 (87)
T 1sfc_D 32 EQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45666666777777666666666555544444444555555544444443
No 125
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=31.31 E-value=62 Score=20.35 Aligned_cols=19 Identities=5% Similarity=0.275 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 32 ATDDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 32 ~~~eL~~ei~~L~~~i~~l 50 (83)
..++++.+++.+..+|+.|
T Consensus 15 ~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 15 KVEELLSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 126
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.20 E-value=1.4e+02 Score=22.71 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLK-----QVEEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 35 eL~~ei~~L~~~i~-----~le~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
+|+.+.+.++++|. ..+.+..+.+.|+.+..-|+.++..-.+.
T Consensus 46 ~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 46 EVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555553 24455666666666666666666655444
No 127
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.10 E-value=79 Score=18.19 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=14.2
Q ss_pred HHHHHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 48 KQVEEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 48 ~~le~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
++++.++.+...|++.-..|..+++.....
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555554443
No 128
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=31.08 E-value=14 Score=25.73 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=24.0
Q ss_pred HHHHHHhhHHhh------hhHHHHHHHHHHHHHHhcccCC
Q psy7799 50 VEEASNNAKVLR------NKAHYLIKELDMFQEAYLVNMS 83 (83)
Q Consensus 50 le~i~~~~K~lr------nKa~~L~~eL~~F~~~yL~~~~ 83 (83)
|.-+..+.|..| |=+.-|...|++|...||++|+
T Consensus 89 L~L~~kG~~~vK~e~e~lny~~qLk~~l~~Ft~~flPhMk 128 (160)
T 3u9j_A 89 LSLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMK 128 (160)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHHHhccccc
Confidence 344455555554 4466788899999999999874
No 129
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.78 E-value=70 Score=18.76 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHH
Q psy7799 14 VEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 14 VqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F 74 (83)
=...|...|..|...|-.....= -.++..|.....-.+.|+....-|+.+++..
T Consensus 23 RR~~in~~f~~Lr~lvP~~~~~k-------~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 23 RRDHIKDSFHSLRDSVPSLQGEK-------ASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHSGGGTTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHCcCCCCCC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999988887653211 1234445555555555555555555555543
No 130
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.69 E-value=97 Score=19.14 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHhhHHhhhhHHHHHHHHHHHHH
Q psy7799 20 STFARLCQLVDRATDD---MHEDIKQLDSHLKQVEE----ASNNAKVLRNKAHYLIKELDMFQE 76 (83)
Q Consensus 20 ~tf~rL~~~Vd~~~~e---L~~ei~~L~~~i~~le~----i~~~~K~lrnKa~~L~~eL~~F~~ 76 (83)
.+|..|.+-|..+-.. |.-||++|..+-..|.. +.+.-..|+....-|..|...+.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766654 34478887777666544 333344466666667666666654
No 131
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=30.38 E-value=45 Score=29.28 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHH
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQE 76 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~ 76 (83)
-..-...|..|.+++.++|+.|..+. -...|+....-|+.+++.|.+
T Consensus 1125 T~ee~ekL~~E~~e~~~ei~~L~~~s-~~~lw~~DLd~~~~~~~~~~~ 1171 (1177)
T 4gfh_A 1125 TKERYQKLLKQKQEKETELENLLKLS-AKDIWNTDLKAFEVGYQEFLQ 1171 (1177)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888888888888887752 223344444444455554443
No 132
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=30.19 E-value=20 Score=21.04 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=23.3
Q ss_pred HHHHHHHH---HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q psy7799 12 HQVEQELS---STFARLCQLVDR----------ATDDMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 12 hQVqqEL~---~tf~rL~~~Vd~----------~~~eL~~ei~~L~~~i~~le 51 (83)
.+|.+++. +|+.||...... ...+...||++|.+++..|+
T Consensus 27 ~~ia~~~gIs~~tl~rW~~~~~~~g~~~~~~~~~~~~~~~ei~~L~~e~~~L~ 79 (97)
T 2jn6_A 27 QQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQR 79 (97)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHCCCSTTCSCCCCHHHHTHHHHHHHHHCGGGGG
T ss_pred HHHHHHHCcCHHHHHHHHHHHhhcCcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 45666653 566677655433 23345667777777666554
No 133
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=29.57 E-value=88 Score=18.26 Aligned_cols=29 Identities=3% Similarity=0.266 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy7799 31 RATDDMHEDIKQLDSHLKQVEEASNNAKV 59 (83)
Q Consensus 31 ~~~~eL~~ei~~L~~~i~~le~i~~~~K~ 59 (83)
....-|+..+.++..+|+.|..+...+..
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666555444433
No 134
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.53 E-value=1.7e+02 Score=21.60 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHH
Q psy7799 35 DMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYL 67 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L 67 (83)
++.+.|+.|++....|-....+++.|-++...+
T Consensus 58 ~~~~~v~~l~~~y~~l~~~~~~~~~~~~~~~~~ 90 (267)
T 3htk_C 58 GIEEQVADITSTYKLLSTYESESNSFDEHIKDL 90 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788887777777777777766666554433
No 135
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.39 E-value=98 Score=23.62 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQV-------EEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~l-------e~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
.+|+.+.++++++|..+ +.+..+.+.|+.+..-|+.++..-.+.
T Consensus 47 ~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 47 EALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667766653 344555666666666666666554443
No 136
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=29.05 E-value=18 Score=25.01 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy7799 26 CQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLR 61 (83)
Q Consensus 26 ~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lr 61 (83)
|.....+.+-|+.+|+.|+.++...|.-.--+=.|+
T Consensus 8 CseS~AFaKRlk~sVKKLE~RLkKYepgSpPALALq 43 (154)
T 1qzv_F 8 XXXXXXXXXXEKQALKKLQASLKLYADDSAPALAIK 43 (154)
T ss_pred cccchhhHHHHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 556667778899999999999887765433333333
No 137
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.01 E-value=78 Score=17.50 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7799 33 TDDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 33 ~~eL~~ei~~L~~~i~~le~ 52 (83)
..||+...++|+.....||+
T Consensus 5 l~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776666664
No 138
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=28.86 E-value=1.1e+02 Score=19.32 Aligned_cols=29 Identities=10% Similarity=0.336 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy7799 32 ATDDMHEDIKQLDSHLKQVEEASNNAKVL 60 (83)
Q Consensus 32 ~~~eL~~ei~~L~~~i~~le~i~~~~K~l 60 (83)
...-|+..++++..+|..|..+...+..+
T Consensus 80 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (135)
T 1q06_A 80 VKRRTLEKVAEIERHIEELQSMRDQLLAL 108 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666655555554443
No 139
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=28.65 E-value=92 Score=18.81 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7799 33 TDDMHEDIKQLDSHLKQVEEASNNA 57 (83)
Q Consensus 33 ~~eL~~ei~~L~~~i~~le~i~~~~ 57 (83)
...|+..++.|..+|+.|+.....+
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l 101 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTI 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665554443
No 140
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.59 E-value=67 Score=20.04 Aligned_cols=19 Identities=11% Similarity=0.510 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQVEEA 53 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~i 53 (83)
+|-.||+.|.-++..||+=
T Consensus 23 ~L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655543
No 141
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=28.56 E-value=1.4e+02 Score=20.28 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=11.1
Q ss_pred HHHHHHhhHHhhhhHHHHHHHHHHH
Q psy7799 50 VEEASNNAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 50 le~i~~~~K~lrnKa~~L~~eL~~F 74 (83)
|+..-..+..+..|.-.|+++..+.
T Consensus 128 Ld~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 128 MKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHh
Confidence 3333334444444555555554443
No 142
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.02 E-value=2.2e+02 Score=24.51 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=3.6
Q ss_pred hhHHHHHHH
Q psy7799 62 NKAHYLIKE 70 (83)
Q Consensus 62 nKa~~L~~e 70 (83)
.|.+-|+.|
T Consensus 1023 ~kv~~L~~e 1031 (1080)
T 2dfs_A 1023 QLVSELKEQ 1031 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344433
No 143
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=28.01 E-value=1.4e+02 Score=20.01 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHH
Q psy7799 31 RATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 31 ~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F 74 (83)
+.+..+++.|.++-.+|=++|.-..++|+| .+.|+..|..-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ig~L~~~l~~~ 54 (125)
T 4g2k_A 14 GNMKQIEDKIEEILSKIYHIENEIARIKKL---IGNLVSRLRRL 54 (125)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHH
Confidence 455667777777776676666655555544 34455554443
No 144
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=27.97 E-value=86 Score=17.63 Aligned_cols=24 Identities=8% Similarity=0.365 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~le 51 (83)
.|.+.-+.|...+.++..+++.||
T Consensus 20 ~v~~~l~~Lt~kL~~vt~rle~lE 43 (47)
T 1aq5_A 20 KVEELINTLQQKLEAVAKRIEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554
No 145
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.53 E-value=1.4e+02 Score=21.27 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=12.6
Q ss_pred HHhhHHhhhhHHHHHHHHHHHHH
Q psy7799 54 SNNAKVLRNKAHYLIKELDMFQE 76 (83)
Q Consensus 54 ~~~~K~lrnKa~~L~~eL~~F~~ 76 (83)
+..+..++++.-.+..+.++|.+
T Consensus 72 ~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 72 EAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666654
No 146
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.78 E-value=1.7e+02 Score=20.58 Aligned_cols=52 Identities=6% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHhhhhHHHHHHH
Q psy7799 19 SSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEE----ASNNAKVLRNKAHYLIKE 70 (83)
Q Consensus 19 ~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~----i~~~~K~lrnKa~~L~~e 70 (83)
..-|.-.-.-..+...+|+.+|.++++++..|.. +....-.+|.|..-..++
T Consensus 30 e~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 30 RDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555667788888888877766544 334444566665555444
No 147
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.71 E-value=1.2e+02 Score=18.79 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q psy7799 36 MHEDIKQLDSHLKQ 49 (83)
Q Consensus 36 L~~ei~~L~~~i~~ 49 (83)
.+.||..|.++|+.
T Consensus 42 ~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 42 LEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 44455555555543
No 148
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.71 E-value=1.1e+02 Score=18.71 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7799 27 QLVDRATDDMHEDIKQLDSHLKQVEEASNN 56 (83)
Q Consensus 27 ~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~ 56 (83)
+..+.+..-|.++++-|..+|-+||.-+.+
T Consensus 39 ~EsEatnarL~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 39 RETEATNAILMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 334444555777777777778777765543
No 149
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=26.40 E-value=2e+02 Score=23.07 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7799 29 VDRATDDMHEDIKQLDSHLK 48 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~ 48 (83)
++.....++.++.++..+++
T Consensus 350 i~~~l~~l~~~~~~~~~~l~ 369 (695)
T 2j69_A 350 VARRIPLLEQDVNELKKRID 369 (695)
T ss_dssp HHHHHHHHTSCSHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333
No 150
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=26.38 E-value=3.6 Score=28.14 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhH
Q psy7799 20 STFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKA 64 (83)
Q Consensus 20 ~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa 64 (83)
....++..+|++++.-|.+.|+.+-.+=++||.+..++..|..-+
T Consensus 134 d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s 178 (196)
T 2nut_C 134 RNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLS 178 (196)
T ss_dssp ---------------CCEEEHHHHC--------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 456788899999999999999999888888888877766666444
No 151
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=26.08 E-value=1.6e+02 Score=21.03 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhHHHHHHHHH
Q psy7799 42 QLDSHLKQVEEASNNAKVLRNKAHYLIKELD 72 (83)
Q Consensus 42 ~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~ 72 (83)
+|+.+|+.|..++...+.|=.=+.-|.+.+.
T Consensus 8 EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~ 38 (224)
T 1i4d_A 8 ELELQIELLRETKRKYESVLQLGRALTAHLY 38 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555444444444333
No 152
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.76 E-value=1.1e+02 Score=18.24 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------hhHHhhhhHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQVEEASN----------NAKVLRNKAHYLIKELDMFQE 76 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~i~~----------~~K~lrnKa~~L~~eL~~F~~ 76 (83)
.|+.+|..|+.+|..|+..-. ++..+-.+..-++.+|+.-..
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554432 233344455555556554443
No 153
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.56 E-value=1.7e+02 Score=20.29 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQ 49 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~ 49 (83)
..|++..+.+..++..
T Consensus 86 ~~Le~~r~~l~~~l~~ 101 (192)
T 2p22_C 86 EDLHEQKDKVQALLEN 101 (192)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344444444433333
No 154
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=25.41 E-value=1.3e+02 Score=19.01 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy7799 37 HEDIKQLDSHLKQVEEASNNAKVLRN 62 (83)
Q Consensus 37 ~~ei~~L~~~i~~le~i~~~~K~lrn 62 (83)
.++++.|...|+.|| .++..+||
T Consensus 95 ~~~~~~L~~~i~~Le---~el~~~R~ 117 (117)
T 3kin_B 95 KEKNKALKSVIQHLE---VELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTC
T ss_pred HHHHHHHHHHHHHHH---HHHHHhhC
Confidence 344455555555544 45555554
No 155
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.32 E-value=2.2e+02 Score=21.39 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=9.8
Q ss_pred HhhHHhhhhHHHHHHHHHHHH
Q psy7799 55 NNAKVLRNKAHYLIKELDMFQ 75 (83)
Q Consensus 55 ~~~K~lrnKa~~L~~eL~~F~ 75 (83)
..++.++.|...|+..+....
T Consensus 33 ~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 33 EMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555444333
No 156
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.75 E-value=50 Score=17.49 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~ 52 (83)
....+|++|.++...||.
T Consensus 11 a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHH
Confidence 344566666666666654
No 157
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.68 E-value=2.1e+02 Score=21.10 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhc
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAYL 79 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~yL 79 (83)
.++++.+++.++++++-++. ..-.-.+|...+|+..|++..+.|.
T Consensus 370 t~eeal~~~~~~i~~~l~~~-------~~~~e~~~~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGL-------RAVMEARNVTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh-------HHHHHhhhHHHHHHHHHHHHhhhHH
Confidence 45666666666666543333 2223456788888888888777774
No 158
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=24.50 E-value=1.9e+02 Score=20.57 Aligned_cols=53 Identities=4% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhH--HHHHHHHHHHHHHh
Q psy7799 24 RLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKA--HYLIKELDMFQEAY 78 (83)
Q Consensus 24 rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa--~~L~~eL~~F~~~y 78 (83)
++...+-...++++..+.....+++.+......-. ..+. .+|-.=+..|.+.|
T Consensus 288 ~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~~~ 342 (353)
T 2x2e_A 288 HIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKH--GTDSRVDEMLRMYHALKEAL 342 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCch--hhhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443211110 1233 78888888888887
No 159
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=24.39 E-value=30 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7799 38 EDIKQLDSHLKQVEEA 53 (83)
Q Consensus 38 ~ei~~L~~~i~~le~i 53 (83)
.+|..|..+|..||.+
T Consensus 58 ~~~~~L~~ri~~LE~~ 73 (81)
T 1hwt_C 58 NELKKLRERVKSLEKT 73 (81)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666654
No 160
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=24.26 E-value=66 Score=20.85 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 17 ELSSTFARLCQLVDRATDD 35 (83)
Q Consensus 17 EL~~tf~rL~~~Vd~~~~e 35 (83)
-|++-|.|++++.|.+...
T Consensus 3 ~M~~pFd~~~armD~vi~~ 21 (102)
T 2pp6_A 3 AMADLFDGMKRRMDALIAE 21 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHH
Confidence 4889999999999987653
No 161
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=24.15 E-value=1.9e+02 Score=20.37 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHH
Q psy7799 41 KQLDSHLKQVEEASNNAKVLRNKAHYLIKELD 72 (83)
Q Consensus 41 ~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~ 72 (83)
+.|..+|.++|.++.-+..+..||+..+.-|+
T Consensus 114 ~aL~~el~RlerLe~La~kf~rka~~~e~~L~ 145 (235)
T 2odv_A 114 KQLRSEFERLEALQRIVTKLQMEAGLAEEQLN 145 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777766654
No 162
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.15 E-value=1e+02 Score=17.16 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q psy7799 39 DIKQLDSHLKQVE 51 (83)
Q Consensus 39 ei~~L~~~i~~le 51 (83)
|+..|+.+++.||
T Consensus 21 elaaleselqale 33 (48)
T 1g6u_A 21 ELAALESELQALE 33 (48)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 163
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=24.11 E-value=1.1e+02 Score=19.16 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy7799 35 DMHEDIKQLDSHLKQVEEASNNA 57 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~i~~~~ 57 (83)
...+|+.+|...|+.|.++.++.
T Consensus 56 QideeV~~LKe~IdaLNK~Kke~ 78 (83)
T 1zke_A 56 QLSEEVERLKELINALNKIKKGL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777766543
No 164
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=23.86 E-value=97 Score=20.50 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy7799 28 LVDRATDDMHEDIKQLDSHLKQVEEASNNAKVL 60 (83)
Q Consensus 28 ~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~l 60 (83)
+++.+..+|..-...++..-.+|+.|..++-.|
T Consensus 102 ~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l 134 (175)
T 4abx_A 102 SVQAIAGELRDVAEGSAADPEALDRVEARLSAL 134 (175)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 334444444332222222334455555554443
No 165
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.79 E-value=1.4e+02 Score=18.60 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQV 50 (83)
Q Consensus 35 eL~~ei~~L~~~i~~l 50 (83)
.|+.++++|.++|..+
T Consensus 12 ~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 12 LLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555444
No 166
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.76 E-value=1.1e+02 Score=17.43 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 22 FARLCQLVDRATDDMHEDIKQLDSHLKQ 49 (83)
Q Consensus 22 f~rL~~~Vd~~~~eL~~ei~~L~~~i~~ 49 (83)
|.-|.+.......+|+.||.+|..+-+.
T Consensus 12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~ 39 (51)
T 2jo8_A 12 VEDLQKRLLALDPMMEQEIEEIRQKYQS 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 4455666677778899999888766543
No 167
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=23.74 E-value=1.4e+02 Score=18.63 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~le~ 52 (83)
..+..+++++..+++.+|+
T Consensus 114 ~~l~~~~~~l~~~l~~le~ 132 (139)
T 3eff_K 114 EAYTRTTRALHERFDRLER 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 168
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.49 E-value=1.2e+02 Score=17.74 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7799 16 QELSSTFARLCQLVDR 31 (83)
Q Consensus 16 qEL~~tf~rL~~~Vd~ 31 (83)
..|...|..|...|-.
T Consensus 15 ~~in~~f~~Lr~lvP~ 30 (83)
T 1nkp_B 15 DHIKDSFHSLRDSVPS 30 (83)
T ss_dssp HHHHHHHHHHHTTSGG
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4578888888887764
No 169
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=23.48 E-value=1.1e+02 Score=18.83 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQVE 51 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le 51 (83)
+|+.++++|..++..|.
T Consensus 8 ~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 8 NMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444333
No 170
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.93 E-value=38 Score=24.24 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKEL 71 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL 71 (83)
.++.+|.++|.+++..|+....++..++..-..|..-|
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888898888888887777777765444444433
No 171
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.74 E-value=1.6e+02 Score=18.95 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 29 VDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 29 Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
.+++..-++..++.++..++.++. .+..++.+...++..|..-...
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~---~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQG---ALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888777665544 4556666777777777665543
No 172
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.39 E-value=1.6e+02 Score=18.74 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy7799 35 DMHEDIKQLDSHLKQVEEASNNAKVLR 61 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le~i~~~~K~lr 61 (83)
+|+.+|.++...+..++-+...+...+
T Consensus 27 ~lke~~~q~~~~~E~i~vLk~Qv~IY~ 53 (94)
T 3jsv_C 27 KLKEEAEQHKIVMETVPVLKAQADIYK 53 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 173
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=22.35 E-value=1.1e+02 Score=17.00 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q psy7799 22 FARLCQLVDRATD 34 (83)
Q Consensus 22 f~rL~~~Vd~~~~ 34 (83)
|-+|..+|.....
T Consensus 9 F~~L~rRVlqlE~ 21 (45)
T 4gif_A 9 FYMLTRRVLQLET 21 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666665554
No 174
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.24 E-value=1.6e+02 Score=18.88 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHH
Q psy7799 30 DRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKE 70 (83)
Q Consensus 30 d~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~e 70 (83)
+....-|+..+.++..+|..|+... ..|.+|..+++..
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~---~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNL---KKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444455556666666655554433 3334444444443
No 175
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.07 E-value=2.2e+02 Score=20.42 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy7799 12 HQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLR 61 (83)
Q Consensus 12 hQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lr 61 (83)
..|.+-|+.-|..+........+.|++--.+....-.+|+.....+-.+|
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999888888888877787778888888877777766
No 176
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.89 E-value=1.2e+02 Score=17.09 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=12.1
Q ss_pred HHHHHhhHHhhhhHHHHHHHHHHH
Q psy7799 51 EEASNNAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 51 e~i~~~~K~lrnKa~~L~~eL~~F 74 (83)
+.+...++.-|.+..-|..+|+.+
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555555543
No 177
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.89 E-value=2.3e+02 Score=20.42 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=27.5
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 8 SNCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLK 48 (83)
Q Consensus 8 sncshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~ 48 (83)
..-+.++..++.....+|.--.+.....+..++.++..++.
T Consensus 14 e~lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~ 54 (273)
T 3s84_A 14 EKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLE 54 (273)
T ss_dssp THHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777666666666666553
No 178
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.79 E-value=2.4e+02 Score=20.72 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 23 ARLCQLVDRATDDMHEDIKQLDSHLKQV 50 (83)
Q Consensus 23 ~rL~~~Vd~~~~eL~~ei~~L~~~i~~l 50 (83)
..+-..++..-.++.+-|..|.++|..|
T Consensus 378 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 405 (463)
T 2xz3_A 378 TSLIHVLEQDQQRLITAINQTHYNLLNV 405 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444443
No 179
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.75 E-value=1.4e+02 Score=19.13 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQV 50 (83)
Q Consensus 35 eL~~ei~~L~~~i~~l 50 (83)
.|.+|++++.++++.|
T Consensus 36 ~l~~e~k~l~ke~~~l 51 (171)
T 2zvf_A 36 RFFEEWKDQRKEIERL 51 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 180
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=21.61 E-value=20 Score=26.76 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=0.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 7 SSNCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 7 ssncshQVqqEL~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
|.-...|.-.||..+.+--.+.+..++.++..- ..|+++|+.||.-+ +.|-.|-.--+.-|+.|.+.
T Consensus 5 st~~~~~a~ke~q~~~~~ye~ai~~~qen~~k~-e~L~~rl~kLE~qq---~~lt~KY~~Ye~sL~eF~~~ 71 (267)
T 3tkl_B 5 STSSTSQADKEIQKMLDEYEQAIKRAQENIKKG-EELEKKLDKLERQG---KDLEDKYKTYEENLEGFEKL 71 (267)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 344456788899999999999999999988887 88998888887655 45666777777778888653
No 181
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.56 E-value=1.6e+02 Score=19.63 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7799 36 MHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 36 L~~ei~~L~~~i~~le~ 52 (83)
|...|++|..+|..||.
T Consensus 66 L~~ki~eL~~kvA~le~ 82 (125)
T 2pms_C 66 LSDKIDELDAEIAKLED 82 (125)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33444444444444433
No 182
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=21.55 E-value=79 Score=18.95 Aligned_cols=18 Identities=11% Similarity=0.436 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7799 36 MHEDIKQLDSHLKQVEEA 53 (83)
Q Consensus 36 L~~ei~~L~~~i~~le~i 53 (83)
.-.|+++|..+|++||..
T Consensus 9 vl~ELeRlkveiQRLE~m 26 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAM 26 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445777888889998865
No 183
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=21.51 E-value=67 Score=17.81 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhHHhhhhHH
Q psy7799 43 LDSHLKQVEEASNNAKVLRNKAH 65 (83)
Q Consensus 43 L~~~i~~le~i~~~~K~lrnKa~ 65 (83)
|+...++-|.+.+....||+|..
T Consensus 8 LeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 8 LEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455666777777777887763
No 184
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.34 E-value=1.4e+02 Score=17.97 Aligned_cols=27 Identities=4% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy7799 32 ATDDMHEDIKQLDSHLKQVEEASNNAK 58 (83)
Q Consensus 32 ~~~eL~~ei~~L~~~i~~le~i~~~~K 58 (83)
....|+..++.+..+|+.|+.....+.
T Consensus 75 ~~~~l~~~~~~l~~~i~~l~~~~~~l~ 101 (108)
T 2vz4_A 75 PRAHLRRQHELLSARIGKLQKMAAAVE 101 (108)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665554433
No 185
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.17 E-value=1.7e+02 Score=18.63 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----HHhhhhHHHHHHHHHH
Q psy7799 32 ATDDMHEDIKQLDSHLKQVEEASNNA----KVLRNKAHYLIKELDM 73 (83)
Q Consensus 32 ~~~eL~~ei~~L~~~i~~le~i~~~~----K~lrnKa~~L~~eL~~ 73 (83)
...+|+..|+.+..++...|.....+ |.+.....-|...|+.
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665555443333 3333333444444443
No 186
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=21.13 E-value=1.3e+02 Score=17.23 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhHHhhhhHHHHH
Q psy7799 35 DMHEDIKQLDSHLKQVE----EASNNAKVLRNKAHYLI 68 (83)
Q Consensus 35 eL~~ei~~L~~~i~~le----~i~~~~K~lrnKa~~L~ 68 (83)
.+..+++.+...+..++ .-+.....|.+|..-|+
T Consensus 24 ~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 24 VLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34445555555444332 11333444555554444
No 187
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=21.10 E-value=2.4e+02 Score=20.41 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=9.6
Q ss_pred hhHHhhhhHHHHHHHHHHH
Q psy7799 56 NAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 56 ~~K~lrnKa~~L~~eL~~F 74 (83)
++..+-.||..+-..|+..
T Consensus 175 ~L~~~~~kv~~vr~~leel 193 (261)
T 3rkg_A 175 DLTLFYQKTLLIRDLLDEL 193 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555543
No 188
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=20.92 E-value=2.2e+02 Score=19.76 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy7799 14 VEQELSSTFARLCQLVDRAT----DD-MHEDIKQLDSHLKQVEEASNNAKVLRNK 63 (83)
Q Consensus 14 VqqEL~~tf~rL~~~Vd~~~----~e-L~~ei~~L~~~i~~le~i~~~~K~lrnK 63 (83)
++++|..+-.-+...|...- +. ++.+|+...+.+.++|+....+-..|+|
T Consensus 120 a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k 174 (256)
T 1zww_A 120 AMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKR 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554443322 22 4556777777777777666666665554
No 189
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.81 E-value=1.1e+02 Score=17.39 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7799 34 DDMHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 34 ~eL~~ei~~L~~~i~~le~ 52 (83)
.+|+.++....+.|..||.
T Consensus 17 eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 4566666666666666664
No 190
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.80 E-value=1.7e+02 Score=18.61 Aligned_cols=7 Identities=43% Similarity=0.634 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy7799 69 KELDMFQ 75 (83)
Q Consensus 69 ~eL~~F~ 75 (83)
.-|..|.
T Consensus 102 ~~L~~FQ 108 (130)
T 2dnx_A 102 AALNNFQ 108 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 191
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.66 E-value=1.5e+02 Score=17.69 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 18 LSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEA 53 (83)
Q Consensus 18 L~~tf~rL~~~Vd~~~~eL~~ei~~L~~~i~~le~i 53 (83)
|.+.-+.|..++..+......+++++...|..||.-
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~e 41 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDE 41 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666666666543
No 192
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.28 E-value=2.1e+02 Score=19.37 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHH
Q psy7799 37 HEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDM 73 (83)
Q Consensus 37 ~~ei~~L~~~i~~le~i~~~~K~lrnKa~~L~~eL~~ 73 (83)
..+|..+.+++..|+.-.+..|+.= |..| |.||++
T Consensus 60 ~kdi~~a~~eL~~m~~~i~~ekP~W-KKiW-E~EL~~ 94 (141)
T 3okq_A 60 SKDLENAQADVLKLQEFIDTEKPHW-KKTW-EAELDK 94 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchh-HHHH-HHHHHH
Confidence 3455555555666655555555554 3333 555554
No 193
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=20.16 E-value=49 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7799 36 MHEDIKQLDSHLKQVEE 52 (83)
Q Consensus 36 L~~ei~~L~~~i~~le~ 52 (83)
|...+..+..+|+.||.
T Consensus 35 Lq~~le~l~~KIq~Le~ 51 (328)
T 1fzc_B 35 LRSILENLRSKIQKLES 51 (328)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 194
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.14 E-value=57 Score=16.39 Aligned_cols=11 Identities=45% Similarity=0.552 Sum_probs=8.7
Q ss_pred HHHHHHHHHHh
Q psy7799 68 IKELDMFQEAY 78 (83)
Q Consensus 68 ~~eL~~F~~~y 78 (83)
+.||..|.+.|
T Consensus 15 ekelrdfiekf 25 (28)
T 1fme_A 15 EKELRDFIEKF 25 (28)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 57888888876
No 195
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.12 E-value=1.7e+02 Score=18.37 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7799 33 TDDMHEDIKQLDSHLKQVEEASN 55 (83)
Q Consensus 33 ~~eL~~ei~~L~~~i~~le~i~~ 55 (83)
...|+.||..|..+-+.||....
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~ 30 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMN 30 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777766544
No 196
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=20.11 E-value=86 Score=15.93 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=11.6
Q ss_pred HHHhhHHhhhhHHHHHHHHHHH
Q psy7799 53 ASNNAKVLRNKAHYLIKELDMF 74 (83)
Q Consensus 53 i~~~~K~lrnKa~~L~~eL~~F 74 (83)
|.+++..+|.|...|-..|+.+
T Consensus 4 IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 4 IKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555666655555543
No 197
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.08 E-value=2e+02 Score=19.09 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHHHHHhhHHhhhhHHHHHHHHHHHHHH
Q psy7799 49 QVEEASNNAKVLRNKAHYLIKELDMFQEA 77 (83)
Q Consensus 49 ~le~i~~~~K~lrnKa~~L~~eL~~F~~~ 77 (83)
++++++.+.+.|..|......|+++....
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777778888888888888888876654
Done!