RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7799
(83 letters)
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein;
2.50A {Mus musculus} SCOP: h.4.16.1
Length = 96
Score = 93.6 bits (232), Expect = 4e-27
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 3 VDLTSSNCSHQVEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRN 62
TS+NCSHQV+QE+++TFARLCQ VD + E+I +L + Q+E+ NN+K+LRN
Sbjct: 19 HMFTSANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78
Query: 63 KAHYLIKELDMFQEAYL 79
KA L EL+ F + +L
Sbjct: 79 KAVQLESELENFSKQFL 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.001
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 38 EDIKQLDSHLKQVEEASNNAKVLRNKA 64
+ +K+L + LK A ++A L KA
Sbjct: 20 QALKKLQASLKLY--ADDSAPALAIKA 44
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 30.3 bits (69), Expect = 0.048
Identities = 5/40 (12%), Positives = 9/40 (22%), Gaps = 7/40 (17%)
Query: 39 DIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELD--MFQE 76
+ S K A+ + + D M
Sbjct: 17 RGSHMASATKNASSATP-----ATMTSMVSQRQDLFMTDP 51
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB:
2znj_A 2zni_A
Length = 288
Score = 28.3 bits (63), Expect = 0.23
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 8/35 (22%)
Query: 41 KQLDSHLKQVEEASNNAKVLRNKAHYLI-KELDMF 74
L S +V+ R K ++L+M
Sbjct: 8 PPLSSFWTKVQYQ-------RLKELNASGEQLEMG 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.38
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 10 CSHQVEQELSSTFARLCQLV----DRA---TDDMHEDIKQLDSHLKQVEEASNNAKVLRN 62
S VE F ++ L + +D+H +L + ++++N
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK--ELIKN 125
Query: 63 --KAHYLIKE 70
A + K
Sbjct: 126 YITARIMAKR 135
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 27.5 bits (62), Expect = 0.48
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 10/39 (25%)
Query: 41 KQLDSHLKQVEEASNNAKVLRNKAHYLI-KELD--MFQE 76
K L+++L+++EEA AK R+ H I K+LD QE
Sbjct: 227 KALNAYLQRLEEA---AK--RD--HRKIGKQLDLYHMQE 258
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 26.1 bits (58), Expect = 1.2
Identities = 1/37 (2%), Positives = 8/37 (21%), Gaps = 8/37 (21%)
Query: 41 KQLDSHLKQVEEASNNAKVLRNKAH-YLIKELDMFQE 76
K + +++ + + +
Sbjct: 7 KTHIDYAYELDITVK-----PD--SRVPVFNREFATF 36
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 26.1 bits (58), Expect = 1.3
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 21 TFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVL 60
T L +++ + MHE +K+ ++ Q+E A ++
Sbjct: 414 TVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLV 453
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 26.0 bits (58), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query: 41 KQLDSHLKQVEEASNNAKVLRNKAHYLI-KELDMF 74
K+L +HL+ +EE + R+ H I KEL++F
Sbjct: 226 KELKAHLQMLEER---KE--RD--HRKIGKELELF 253
>2bf1_A SIV GP120, exterior membrane glycoprotein GP120; virus protein,
envelope glycoprotein, AIDS, coat protein; HET: NAG BMA
NDG FUC MAN; 4.0A {Simian immunodeficiency virus} PDB:
3fus_A*
Length = 316
Score = 25.2 bits (56), Expect = 2.9
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 33 TDDMHEDIKQL-DSHLKQVEEASNNAKVLRN 62
T+ ED+ QL ++ +K + S +
Sbjct: 20 TEQAIEDVWQLFETSIKPCVKLSPLCIGAGH 50
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 24.4 bits (53), Expect = 6.4
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 38 EDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEAY 78
+++++ + +L + ++ +L KA L F +
Sbjct: 286 DELRRAEDYLSSINGLEKSSDLLLCKADTL-FVRSRFIDVL 325
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 24.1 bits (53), Expect = 7.5
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 27 QLVDRATDDMHEDIKQL 43
++ + T+ D ++L
Sbjct: 117 EISEFFTEAFFNDCRKL 133
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 23.7 bits (51), Expect = 9.3
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 27 QLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLIKELDMFQEA 77
L++ D + E+ L+ LK++ + K L+ +ELD+ E
Sbjct: 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ 1956
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.126 0.342
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,144,882
Number of extensions: 52096
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 17
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)