RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7799
         (83 letters)



>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 642

 Score = 24.4 bits (53), Expect = 1.8
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 14  VEQELSSTFARLCQLVDRATDDMHEDIKQLDSHLKQVEEASNNAKVLRNKAHYLI 68
               ++S  ++  ++ D   +DM       D +  ++           + AHYL+
Sbjct: 249 KGSAVASVVSKAAKMGDFLRNDMF------DKYFMKIGAQDKTPATGYDSAHYLM 297


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
          virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 23.1 bits (50), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 1/17 (5%)

Query: 33 TDDMHEDIKQL-DSHLK 48
           + MHEDI  L D  LK
Sbjct: 19 VEQMHEDIISLWDQSLK 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.126    0.342 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 270,694
Number of extensions: 9327
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 9
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)