Query psy78
Match_columns 523
No_of_seqs 460 out of 2438
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 19:07:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy78.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/78hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0208|consensus 100.0 8.5E-49 1.8E-53 411.1 24.4 317 179-523 408-885 (1140)
2 TIGR01657 P-ATPase-V P-type AT 100.0 2E-44 4.2E-49 410.8 30.1 342 182-523 391-834 (1054)
3 KOG0204|consensus 100.0 1.4E-40 3.1E-45 344.8 17.2 287 184-523 380-771 (1034)
4 COG0474 MgtA Cation transport 100.0 2.5E-40 5.3E-45 370.5 12.8 279 186-521 295-669 (917)
5 KOG0202|consensus 100.0 5.4E-39 1.2E-43 333.6 18.4 289 184-523 277-710 (972)
6 KOG0209|consensus 100.0 2.1E-38 4.6E-43 326.4 18.7 314 160-521 408-837 (1160)
7 PRK15122 magnesium-transportin 100.0 1.8E-38 4E-43 354.9 19.6 280 182-522 312-668 (903)
8 PRK10517 magnesium-transportin 100.0 1.6E-38 3.5E-43 354.8 18.2 276 182-519 314-666 (902)
9 TIGR01524 ATPase-IIIB_Mg magne 100.0 1.1E-37 2.4E-42 348.2 21.6 275 182-518 279-630 (867)
10 TIGR01517 ATPase-IIB_Ca plasma 100.0 1.3E-37 2.9E-42 351.6 20.9 277 185-521 322-699 (941)
11 TIGR01106 ATPase-IIC_X-K sodiu 100.0 1.1E-36 2.5E-41 345.0 21.5 310 182-522 287-715 (997)
12 TIGR01647 ATPase-IIIA_H plasma 100.0 1.1E-36 2.4E-41 336.1 20.0 270 182-519 229-563 (755)
13 TIGR01523 ATPase-IID_K-Na pota 100.0 1.7E-36 3.7E-41 342.9 21.2 186 291-521 587-776 (1053)
14 COG2217 ZntA Cation transport 100.0 2.5E-35 5.4E-40 315.9 18.7 226 184-518 350-627 (713)
15 PRK01122 potassium-transportin 100.0 8.6E-35 1.9E-39 311.8 18.4 221 189-518 248-535 (679)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 8.8E-35 1.9E-39 326.8 19.1 271 181-522 266-649 (884)
17 TIGR01116 ATPase-IIA1_Ca sarco 100.0 8.1E-34 1.7E-38 319.8 21.8 178 291-519 479-659 (917)
18 PRK14010 potassium-transportin 100.0 4.9E-34 1.1E-38 305.7 18.5 224 187-519 246-532 (673)
19 KOG0203|consensus 100.0 5.8E-36 1.2E-40 310.4 3.1 305 182-523 309-738 (1019)
20 TIGR01497 kdpB K+-transporting 100.0 3.5E-32 7.5E-37 291.1 18.7 222 189-519 249-537 (675)
21 KOG0207|consensus 100.0 5E-33 1.1E-37 292.8 11.3 230 184-523 527-817 (951)
22 TIGR01652 ATPase-Plipid phosph 100.0 1.7E-31 3.8E-36 305.6 22.7 219 290-519 558-797 (1057)
23 PRK11033 zntA zinc/cadmium/mer 100.0 2.2E-30 4.7E-35 285.3 18.7 226 182-520 379-658 (741)
24 PRK10671 copA copper exporting 100.0 2.4E-28 5.2E-33 274.2 20.1 226 186-520 464-742 (834)
25 TIGR01494 ATPase_P-type ATPase 100.0 7E-28 1.5E-32 256.5 21.1 199 185-516 176-432 (499)
26 TIGR01511 ATPase-IB1_Cu copper 100.0 7.4E-28 1.6E-32 258.3 18.5 224 186-519 224-495 (562)
27 KOG0210|consensus 100.0 4.2E-28 9.1E-33 246.5 15.3 208 290-521 584-812 (1051)
28 KOG0206|consensus 99.9 1.3E-27 2.8E-32 263.6 14.7 322 186-521 462-825 (1151)
29 TIGR01512 ATPase-IB2_Cd heavy 99.9 3.2E-27 6.9E-32 252.5 15.3 221 189-518 196-454 (536)
30 TIGR01525 ATPase-IB_hvy heavy 99.9 1.2E-26 2.5E-31 249.7 19.2 223 188-519 195-476 (556)
31 PLN03190 aminophospholipid tra 99.9 1.4E-26 3.1E-31 263.3 19.7 222 290-519 653-900 (1178)
32 KOG0205|consensus 99.9 1.9E-25 4.1E-30 226.2 8.0 263 194-521 282-615 (942)
33 COG2216 KdpB High-affinity K+ 99.9 2.3E-24 4.9E-29 213.8 13.7 107 331-519 432-538 (681)
34 KOG0208|consensus 99.8 2.9E-20 6.3E-25 197.1 8.5 143 1-143 987-1133(1140)
35 KOG0209|consensus 99.8 1.1E-19 2.3E-24 189.0 8.8 137 1-138 1009-1149(1160)
36 PRK10513 sugar phosphate phosp 99.8 1.3E-18 2.8E-23 171.1 8.5 186 334-522 11-244 (270)
37 COG0561 Cof Predicted hydrolas 99.7 3.1E-18 6.8E-23 167.7 8.4 180 339-522 12-237 (264)
38 PRK15126 thiamin pyrimidine py 99.7 3.7E-18 7.9E-23 168.0 8.5 175 345-522 18-236 (272)
39 PRK10976 putative hydrolase; P 99.7 3.6E-17 7.8E-22 160.4 10.7 175 345-522 18-238 (266)
40 PRK03669 mannosyl-3-phosphogly 99.7 2.2E-16 4.8E-21 155.1 11.7 181 334-520 15-236 (271)
41 TIGR01487 SPP-like sucrose-pho 99.7 1.1E-16 2.4E-21 151.8 8.5 173 345-522 17-195 (215)
42 PLN02887 hydrolase family prot 99.7 1.1E-16 2.3E-21 170.0 8.3 186 334-522 316-555 (580)
43 PF08282 Hydrolase_3: haloacid 99.7 4.7E-17 1E-21 157.7 4.1 174 344-521 13-233 (254)
44 TIGR01482 SPP-subfamily Sucros 99.6 9.1E-16 2E-20 146.5 10.6 172 346-522 15-197 (225)
45 PRK01158 phosphoglycolate phos 99.6 6.6E-16 1.4E-20 148.0 8.3 173 346-522 20-205 (230)
46 PF00702 Hydrolase: haloacid d 99.6 8E-16 1.7E-20 145.5 8.3 98 333-510 114-215 (215)
47 TIGR01486 HAD-SF-IIB-MPGP mann 99.6 2.9E-15 6.3E-20 145.9 10.9 170 347-520 17-224 (256)
48 TIGR01657 P-ATPase-V P-type AT 99.6 9E-16 1.9E-20 176.1 8.3 116 1-117 936-1053(1054)
49 PRK10530 pyridoxal phosphate ( 99.6 2.5E-15 5.5E-20 147.8 10.3 175 345-522 19-247 (272)
50 PRK00192 mannosyl-3-phosphogly 99.6 1.1E-14 2.4E-19 143.2 10.9 175 344-522 19-239 (273)
51 TIGR00099 Cof-subfamily Cof su 99.6 6.7E-15 1.5E-19 143.5 8.5 174 345-521 15-235 (256)
52 TIGR02463 MPGP_rel mannosyl-3- 99.5 1.2E-13 2.5E-18 131.6 10.7 166 347-515 17-220 (221)
53 TIGR02461 osmo_MPG_phos mannos 99.5 2.1E-13 4.5E-18 129.8 10.0 174 339-516 8-225 (225)
54 COG4087 Soluble P-type ATPase 99.4 5.4E-13 1.2E-17 109.8 9.2 100 335-515 19-118 (152)
55 TIGR01485 SPP_plant-cyano sucr 99.4 1.6E-13 3.4E-18 133.1 7.0 178 344-522 19-216 (249)
56 PTZ00174 phosphomannomutase; P 99.4 3.5E-13 7.7E-18 130.4 7.7 175 345-522 21-237 (247)
57 PLN02382 probable sucrose-phos 99.4 3.9E-13 8.3E-18 138.8 8.4 176 346-522 28-227 (413)
58 PRK14502 bifunctional mannosyl 99.4 2.1E-12 4.5E-17 136.9 10.6 171 346-520 433-661 (694)
59 TIGR02471 sucr_syn_bact_C sucr 99.3 8.9E-13 1.9E-17 126.8 5.8 171 347-522 17-207 (236)
60 PRK10187 trehalose-6-phosphate 99.3 6.8E-12 1.5E-16 122.5 9.1 168 346-521 36-225 (266)
61 COG0560 SerB Phosphoserine pho 99.1 2.8E-10 6.2E-15 106.8 10.6 108 345-517 76-187 (212)
62 TIGR01484 HAD-SF-IIB HAD-super 99.1 2.1E-10 4.6E-15 107.7 9.5 163 346-515 17-204 (204)
63 PRK11133 serB phosphoserine ph 99.1 1.7E-10 3.7E-15 115.1 9.1 111 345-522 180-295 (322)
64 PRK12702 mannosyl-3-phosphogly 99.1 8.8E-10 1.9E-14 106.0 11.3 56 344-402 16-71 (302)
65 TIGR02137 HSK-PSP phosphoserin 99.0 2E-09 4.2E-14 100.6 11.3 103 346-518 68-172 (203)
66 TIGR02726 phenyl_P_delta pheny 99.0 8.8E-10 1.9E-14 99.4 7.1 89 352-522 40-130 (169)
67 TIGR01670 YrbI-phosphatas 3-de 98.9 2.3E-09 4.9E-14 95.8 7.9 84 354-521 36-123 (154)
68 PF05116 S6PP: Sucrose-6F-phos 98.9 1.1E-09 2.3E-14 105.8 3.5 163 358-521 31-212 (247)
69 PRK09484 3-deoxy-D-manno-octul 98.8 1.1E-08 2.3E-13 94.3 7.2 84 353-520 55-142 (183)
70 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.7 6.4E-08 1.4E-12 90.4 9.8 108 346-518 80-191 (201)
71 PRK14501 putative bifunctional 98.7 1.3E-07 2.9E-12 105.5 13.2 170 346-521 514-705 (726)
72 PLN02423 phosphomannomutase 98.7 7.4E-08 1.6E-12 93.0 9.8 47 470-517 179-232 (245)
73 KOG1615|consensus 98.6 4.4E-08 9.5E-13 86.9 5.2 109 345-516 87-199 (227)
74 COG1778 Low specificity phosph 98.6 7.1E-08 1.5E-12 82.8 4.6 86 353-522 42-131 (170)
75 PRK13582 thrH phosphoserine ph 98.5 6.1E-07 1.3E-11 84.2 11.3 103 346-517 68-171 (205)
76 TIGR00338 serB phosphoserine p 98.5 2.7E-07 5.8E-12 87.6 9.0 106 346-517 85-195 (219)
77 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.5 5.1E-07 1.1E-11 84.5 8.6 109 344-518 85-199 (202)
78 PF12710 HAD: haloacid dehalog 98.4 8.9E-07 1.9E-11 82.0 8.5 38 349-386 92-129 (192)
79 TIGR01488 HAD-SF-IB Haloacid D 98.4 1.5E-06 3.2E-11 79.4 9.7 40 347-386 74-113 (177)
80 cd01427 HAD_like Haloacid deha 98.4 1.2E-06 2.5E-11 75.7 8.6 45 343-387 21-65 (139)
81 TIGR03333 salvage_mtnX 2-hydro 98.4 2.5E-06 5.5E-11 80.7 11.5 115 344-516 68-182 (214)
82 PRK09552 mtnX 2-hydroxy-3-keto 98.3 4.8E-06 1E-10 79.0 11.0 110 346-514 74-184 (219)
83 smart00775 LNS2 LNS2 domain. T 98.3 8.5E-06 1.8E-10 72.8 10.8 105 344-512 25-141 (157)
84 TIGR01489 DKMTPPase-SF 2,3-dik 98.3 3.1E-06 6.8E-11 78.0 8.3 114 345-514 71-186 (188)
85 PLN02954 phosphoserine phospha 98.1 1.5E-05 3.2E-10 75.9 10.2 41 346-386 84-124 (224)
86 PLN02580 trehalose-phosphatase 98.1 2.3E-05 4.9E-10 79.4 11.5 52 471-522 291-357 (384)
87 PLN02205 alpha,alpha-trehalose 98.0 1.4E-05 3.1E-10 89.6 9.0 49 333-381 603-652 (854)
88 TIGR01545 YfhB_g-proteo haloac 98.0 3.7E-05 7.9E-10 72.4 10.3 107 346-517 94-202 (210)
89 COG0546 Gph Predicted phosphat 98.0 5.4E-05 1.2E-09 71.9 11.0 44 344-387 87-130 (220)
90 PRK08238 hypothetical protein; 98.0 3.9E-05 8.5E-10 80.8 10.8 97 346-519 72-168 (479)
91 PRK13222 phosphoglycolate phos 98.0 7E-05 1.5E-09 71.2 11.2 43 344-386 91-133 (226)
92 PRK11590 hypothetical protein; 98.0 5E-05 1.1E-09 71.6 10.0 107 346-517 95-203 (211)
93 TIGR00685 T6PP trehalose-phosp 97.9 4.2E-05 9.2E-10 73.8 9.1 41 476-516 165-217 (244)
94 PRK13223 phosphoglycolate phos 97.8 0.00018 4E-09 70.6 11.0 42 345-386 100-141 (272)
95 TIGR01454 AHBA_synth_RP 3-amin 97.8 0.00017 3.7E-09 67.6 10.2 42 345-386 74-115 (205)
96 TIGR01449 PGP_bact 2-phosphogl 97.8 0.00018 4E-09 67.7 10.4 41 346-386 85-125 (213)
97 TIGR01544 HAD-SF-IE haloacid d 97.7 0.00023 5E-09 69.0 10.0 45 345-389 120-164 (277)
98 PRK10826 2-deoxyglucose-6-phos 97.7 0.00016 3.5E-09 68.7 8.7 43 345-387 91-133 (222)
99 PRK13288 pyrophosphatase PpaX; 97.6 0.00031 6.7E-09 66.3 9.3 41 346-386 82-122 (214)
100 PRK13226 phosphoglycolate phos 97.5 0.00073 1.6E-08 64.6 10.9 42 345-386 94-135 (229)
101 COG3769 Predicted hydrolase (H 97.5 0.00031 6.6E-09 64.1 7.6 52 348-401 25-76 (274)
102 PLN03017 trehalose-phosphatase 97.5 0.001 2.2E-08 67.0 11.3 62 334-401 119-182 (366)
103 PF00122 E1-E2_ATPase: E1-E2 A 97.4 7.4E-05 1.6E-09 71.4 2.7 54 182-262 177-230 (230)
104 TIGR03351 PhnX-like phosphonat 97.4 0.00092 2E-08 63.3 10.3 42 345-386 86-127 (220)
105 TIGR01548 HAD-SF-IA-hyp1 haloa 97.4 0.00078 1.7E-08 62.7 9.5 43 344-386 104-146 (197)
106 PHA02530 pseT polynucleotide k 97.4 0.00065 1.4E-08 67.7 9.3 44 343-386 184-227 (300)
107 COG4359 Uncharacterized conser 97.3 0.00068 1.5E-08 60.1 7.0 110 346-514 73-183 (220)
108 TIGR01672 AphA HAD superfamily 97.3 0.00072 1.6E-08 64.5 7.6 40 347-386 115-158 (237)
109 PRK11009 aphA acid phosphatase 97.3 0.0012 2.7E-08 62.9 8.6 41 345-385 113-157 (237)
110 TIGR01428 HAD_type_II 2-haloal 97.2 0.0036 7.7E-08 58.2 11.2 41 346-386 92-132 (198)
111 PLN02770 haloacid dehalogenase 97.2 0.0023 4.9E-08 62.0 10.0 42 346-387 108-149 (248)
112 PRK13225 phosphoglycolate phos 97.2 0.0017 3.7E-08 63.6 9.2 41 346-386 142-182 (273)
113 TIGR01662 HAD-SF-IIIA HAD-supe 97.2 0.0019 4.1E-08 55.8 8.3 41 346-386 25-73 (132)
114 TIGR01422 phosphonatase phosph 97.2 0.0024 5.3E-08 61.9 9.9 42 346-387 99-140 (253)
115 TIGR02253 CTE7 HAD superfamily 97.1 0.0032 6.9E-08 59.6 9.6 41 346-386 94-134 (221)
116 PRK14988 GMP/IMP nucleotidase; 97.0 0.0067 1.5E-07 57.7 10.8 42 345-386 92-133 (224)
117 PLN03243 haloacid dehalogenase 97.0 0.0057 1.2E-07 59.5 10.4 42 346-387 109-150 (260)
118 PF13419 HAD_2: Haloacid dehal 97.0 0.0037 8E-08 56.2 8.6 43 344-386 75-117 (176)
119 PF06888 Put_Phosphatase: Puta 97.0 0.0029 6.3E-08 60.0 7.9 43 345-387 70-114 (234)
120 TIGR01990 bPGM beta-phosphoglu 96.9 0.0027 5.9E-08 58.1 7.0 39 346-386 87-125 (185)
121 TIGR01509 HAD-SF-IA-v3 haloaci 96.9 0.009 1.9E-07 54.4 10.3 40 346-386 85-124 (183)
122 PRK11587 putative phosphatase; 96.8 0.0085 1.8E-07 56.7 10.2 40 346-385 83-122 (218)
123 PRK13478 phosphonoacetaldehyde 96.8 0.0081 1.8E-07 58.8 10.3 41 346-386 101-141 (267)
124 TIGR02009 PGMB-YQAB-SF beta-ph 96.8 0.003 6.4E-08 57.9 6.7 40 345-386 87-126 (185)
125 TIGR01685 MDP-1 magnesium-depe 96.8 0.01 2.2E-07 53.8 9.6 50 337-386 36-86 (174)
126 PLN02575 haloacid dehalogenase 96.7 0.011 2.4E-07 60.2 10.7 41 346-386 216-256 (381)
127 PRK06698 bifunctional 5'-methy 96.7 0.0062 1.3E-07 64.6 9.3 42 346-387 330-371 (459)
128 PLN02779 haloacid dehalogenase 96.7 0.008 1.7E-07 59.4 9.4 39 346-384 144-182 (286)
129 TIGR01533 lipo_e_P4 5'-nucleot 96.6 0.014 3E-07 56.7 9.9 43 344-386 116-161 (266)
130 KOG3120|consensus 96.6 0.0094 2E-07 54.7 7.9 116 345-516 83-209 (256)
131 TIGR01675 plant-AP plant acid 96.5 0.018 3.9E-07 54.4 9.8 43 344-386 118-163 (229)
132 TIGR01656 Histidinol-ppas hist 96.5 0.015 3.2E-07 51.4 8.4 41 346-386 27-82 (147)
133 PLN02940 riboflavin kinase 96.4 0.011 2.3E-07 61.1 8.3 41 346-386 93-134 (382)
134 PRK06769 hypothetical protein; 96.3 0.015 3.3E-07 52.9 7.9 27 347-373 29-55 (173)
135 TIGR02252 DREG-2 REG-2-like, H 96.3 0.023 4.9E-07 53.0 9.2 40 346-386 105-144 (203)
136 TIGR01549 HAD-SF-IA-v1 haloaci 96.3 0.018 3.9E-07 51.0 8.1 40 344-383 62-101 (154)
137 TIGR01668 YqeG_hyp_ppase HAD s 96.3 0.015 3.4E-07 52.6 7.7 40 346-385 43-83 (170)
138 PRK08942 D,D-heptose 1,7-bisph 96.2 0.025 5.5E-07 51.7 9.0 26 347-372 30-55 (181)
139 smart00577 CPDc catalytic doma 96.2 0.0057 1.2E-07 54.1 4.5 42 344-386 43-84 (148)
140 TIGR01261 hisB_Nterm histidino 96.1 0.032 6.8E-07 50.1 8.5 40 346-385 29-83 (161)
141 PLN02151 trehalose-phosphatase 95.9 0.055 1.2E-06 54.5 10.2 48 347-400 121-168 (354)
142 TIGR01686 FkbH FkbH-like domai 95.9 0.025 5.5E-07 56.9 7.7 36 347-382 32-67 (320)
143 PLN02645 phosphoglycolate phos 95.8 0.047 1E-06 54.7 9.3 48 339-386 37-87 (311)
144 TIGR01681 HAD-SF-IIIC HAD-supe 95.8 0.026 5.7E-07 48.5 6.5 39 346-384 29-68 (128)
145 TIGR02254 YjjG/YfnB HAD superf 95.8 0.041 8.9E-07 51.9 8.3 41 346-387 97-137 (224)
146 PRK09449 dUMP phosphatase; Pro 95.6 0.097 2.1E-06 49.5 10.3 40 346-386 95-134 (224)
147 TIGR01664 DNA-3'-Pase DNA 3'-p 95.6 0.077 1.7E-06 47.9 8.9 39 348-386 44-94 (166)
148 PLN02811 hydrolase 95.6 0.062 1.3E-06 50.8 8.7 32 345-376 77-108 (220)
149 TIGR01691 enolase-ppase 2,3-di 95.4 0.13 2.9E-06 48.6 10.2 41 343-383 92-132 (220)
150 PF00689 Cation_ATPase_C: Cati 95.4 0.033 7.2E-07 50.9 6.0 99 3-107 56-158 (182)
151 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.2 0.096 2.1E-06 50.4 8.7 48 339-386 17-66 (242)
152 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.0 0.037 8E-07 53.5 5.4 61 339-399 10-73 (249)
153 COG2179 Predicted hydrolase of 95.0 0.084 1.8E-06 46.6 6.8 67 297-386 20-86 (175)
154 PRK05446 imidazole glycerol-ph 94.9 0.11 2.4E-06 52.6 8.6 27 345-371 29-55 (354)
155 PRK09456 ?-D-glucose-1-phospha 94.9 0.16 3.4E-06 47.2 9.1 32 346-377 84-115 (199)
156 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.8 0.045 9.8E-07 53.2 5.3 55 338-392 9-70 (257)
157 TIGR00213 GmhB_yaeD D,D-heptos 94.8 0.22 4.7E-06 45.3 9.5 27 347-373 27-53 (176)
158 TIGR02247 HAD-1A3-hyp Epoxide 94.7 0.081 1.8E-06 49.6 6.6 30 345-374 93-122 (211)
159 PF02358 Trehalose_PPase: Treh 94.4 0.11 2.3E-06 49.8 6.7 48 472-519 159-219 (235)
160 PLN02177 glycerol-3-phosphate 94.3 0.28 6E-06 52.2 10.1 42 476-517 174-215 (497)
161 TIGR01689 EcbF-BcbF capsule bi 93.8 0.081 1.8E-06 45.1 4.0 33 345-377 23-55 (126)
162 PLN02919 haloacid dehalogenase 93.7 0.28 6.1E-06 57.3 9.7 41 346-386 161-201 (1057)
163 COG4030 Uncharacterized protei 93.6 0.29 6.3E-06 45.3 7.5 40 346-386 83-122 (315)
164 TIGR01993 Pyr-5-nucltdase pyri 93.6 0.25 5.5E-06 45.1 7.3 38 346-386 84-121 (184)
165 PRK10444 UMP phosphatase; Prov 93.5 0.11 2.3E-06 50.2 5.0 56 338-393 9-67 (248)
166 PRK10725 fructose-1-P/6-phosph 93.4 0.25 5.4E-06 45.2 6.9 38 347-386 89-126 (188)
167 TIGR01684 viral_ppase viral ph 93.3 0.24 5.1E-06 48.4 6.9 52 347-399 146-198 (301)
168 PF03767 Acid_phosphat_B: HAD 93.3 0.2 4.2E-06 47.8 6.2 41 346-386 115-158 (229)
169 PHA02597 30.2 hypothetical pro 93.2 0.38 8.2E-06 44.5 8.0 40 346-386 74-113 (197)
170 TIGR02468 sucrsPsyn_pln sucros 93.2 0.22 4.9E-06 57.0 7.4 54 349-402 787-845 (1050)
171 TIGR01452 PGP_euk phosphoglyco 93.1 0.83 1.8E-05 44.9 10.6 48 339-386 11-61 (279)
172 TIGR01116 ATPase-IIA1_Ca sarco 93.0 0.078 1.7E-06 61.1 3.6 61 186-273 236-296 (917)
173 TIGR01106 ATPase-IIC_X-K sodiu 92.8 0.71 1.5E-05 53.8 11.1 65 40-107 892-958 (997)
174 PF08235 LNS2: LNS2 (Lipin/Ned 92.8 0.82 1.8E-05 40.5 8.9 35 345-379 26-60 (157)
175 PRK10563 6-phosphogluconate ph 92.4 0.63 1.4E-05 43.8 8.4 39 345-386 87-125 (221)
176 PF13344 Hydrolase_6: Haloacid 92.2 0.18 3.9E-06 41.3 3.8 50 338-387 6-58 (101)
177 COG1877 OtsB Trehalose-6-phosp 92.1 1.2 2.5E-05 43.3 9.8 159 345-510 39-218 (266)
178 COG0637 Predicted phosphatase/ 91.8 0.44 9.6E-06 45.1 6.5 42 345-386 85-126 (221)
179 PF09419 PGP_phosphatase: Mito 91.6 1 2.2E-05 40.5 8.2 43 344-386 57-108 (168)
180 TIGR01517 ATPase-IIB_Ca plasma 91.5 0.68 1.5E-05 53.7 8.9 66 37-107 846-914 (941)
181 PHA03398 viral phosphatase sup 91.0 0.51 1.1E-05 46.2 6.1 51 348-399 150-200 (303)
182 COG0474 MgtA Cation transport 90.7 0.72 1.6E-05 53.2 7.9 69 36-105 816-885 (917)
183 TIGR01524 ATPase-IIIB_Mg magne 90.1 1 2.3E-05 51.6 8.6 76 41-120 772-847 (867)
184 TIGR01680 Veg_Stor_Prot vegeta 90.0 1.8 3.9E-05 41.9 8.8 31 344-374 143-173 (275)
185 TIGR01523 ATPase-IID_K-Na pota 89.8 0.22 4.8E-06 58.1 2.9 60 187-273 307-366 (1053)
186 COG0241 HisB Histidinol phosph 88.7 3.1 6.7E-05 37.9 8.8 35 478-512 107-144 (181)
187 PF12689 Acid_PPase: Acid Phos 87.9 2.1 4.6E-05 38.5 7.3 41 346-386 45-86 (169)
188 PRK10748 flavin mononucleotide 87.5 3.2 7E-05 39.6 8.9 30 489-518 179-209 (238)
189 PLN03064 alpha,alpha-trehalose 86.7 11 0.00023 43.4 13.5 48 347-399 623-671 (934)
190 COG3700 AphA Acid phosphatase 86.6 1.8 3.8E-05 38.7 5.7 39 347-385 115-157 (237)
191 PLN03063 alpha,alpha-trehalose 86.3 14 0.00029 42.2 14.2 48 347-399 533-581 (797)
192 PRK10517 magnesium-transportin 85.9 2.9 6.2E-05 48.2 8.7 76 42-121 808-883 (902)
193 COG1011 Predicted hydrolase (H 84.4 5.3 0.00011 37.5 8.6 43 344-387 97-139 (229)
194 KOG4383|consensus 84.2 2.2 4.8E-05 45.8 6.1 55 333-387 813-867 (1354)
195 TIGR01460 HAD-SF-IIA Haloacid 82.5 2.5 5.4E-05 40.4 5.5 54 339-392 7-64 (236)
196 TIGR01663 PNK-3'Pase polynucle 81.4 4.6 0.0001 43.3 7.4 39 347-385 198-248 (526)
197 PRK15122 magnesium-transportin 80.4 5.5 0.00012 46.0 8.2 64 41-107 807-870 (903)
198 TIGR01522 ATPase-IIA2_Ca golgi 80.1 7.4 0.00016 45.0 9.1 66 40-107 788-855 (884)
199 TIGR02251 HIF-SF_euk Dullard-l 78.1 1.5 3.2E-05 39.3 2.2 44 342-386 38-81 (162)
200 cd02071 MM_CoA_mut_B12_BD meth 77.2 4.8 0.0001 34.0 5.0 81 299-386 22-104 (122)
201 TIGR02244 HAD-IG-Ncltidse HAD 77.0 23 0.00049 35.9 10.4 38 347-384 185-223 (343)
202 TIGR01493 HAD-SF-IA-v2 Haloaci 75.0 4.8 0.0001 36.1 4.7 34 346-386 90-123 (175)
203 cd02067 B12-binding B12 bindin 74.5 11 0.00024 31.5 6.5 82 298-386 21-104 (119)
204 PF11019 DUF2608: Protein of u 74.3 24 0.00052 34.1 9.5 41 346-386 81-124 (252)
205 COG0647 NagD Predicted sugar p 72.4 5.3 0.00011 38.9 4.4 47 337-383 15-61 (269)
206 COG2503 Predicted secreted aci 71.1 29 0.00063 33.0 8.7 42 345-386 121-166 (274)
207 KOG3040|consensus 69.2 9.8 0.00021 35.1 5.1 54 335-388 12-68 (262)
208 PRK02261 methylaspartate mutas 65.8 17 0.00037 31.5 5.8 81 299-386 26-114 (137)
209 TIGR01458 HAD-SF-IIA-hyp3 HAD- 64.9 8.8 0.00019 37.2 4.3 32 482-513 188-220 (257)
210 PLN03190 aminophospholipid tra 62.9 7.8 0.00017 46.0 4.1 67 190-273 394-460 (1178)
211 PTZ00445 p36-lilke protein; Pr 60.9 16 0.00034 34.1 4.9 74 290-373 28-102 (219)
212 TIGR00640 acid_CoA_mut_C methy 58.0 34 0.00073 29.4 6.2 82 298-386 24-107 (132)
213 PF13380 CoA_binding_2: CoA bi 57.7 15 0.00033 30.7 3.9 87 294-386 17-104 (116)
214 PF05822 UMPH-1: Pyrimidine 5' 57.3 27 0.00059 33.4 5.9 47 345-391 89-135 (246)
215 TIGR02370 pyl_corrinoid methyl 56.5 21 0.00046 33.0 5.1 81 298-387 106-189 (197)
216 KOG0202|consensus 53.0 15 0.00033 41.0 3.9 44 61-106 897-940 (972)
217 cd05017 SIS_PGI_PMI_1 The memb 53.0 23 0.0005 29.6 4.4 41 343-385 51-91 (119)
218 TIGR01459 HAD-SF-IIA-hyp4 HAD- 51.7 20 0.00044 34.2 4.3 24 490-513 213-237 (242)
219 TIGR01501 MthylAspMutase methy 51.3 56 0.0012 28.2 6.5 81 299-386 24-112 (134)
220 PF06941 NT5C: 5' nucleotidase 51.1 12 0.00026 34.4 2.5 29 346-374 73-101 (191)
221 PF13242 Hydrolase_like: HAD-h 50.6 14 0.00031 27.9 2.5 30 483-512 14-44 (75)
222 PF03332 PMM: Eukaryotic phosp 50.3 5.3 0.00011 37.4 0.0 47 471-517 153-207 (220)
223 TIGR02250 FCP1_euk FCP1-like p 49.3 26 0.00056 31.1 4.3 43 343-386 55-97 (156)
224 cd02072 Glm_B12_BD B12 binding 47.9 55 0.0012 28.0 5.8 81 299-386 22-110 (128)
225 PF08510 PIG-P: PIG-P; InterP 47.6 49 0.0011 28.2 5.5 57 71-128 4-62 (126)
226 PF10686 DUF2493: Protein of u 47.5 43 0.00094 25.3 4.6 50 303-382 2-51 (71)
227 KOG2914|consensus 47.3 84 0.0018 29.7 7.5 38 346-383 92-129 (222)
228 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.1 17 0.00037 30.5 2.6 34 345-378 56-89 (126)
229 cd05710 SIS_1 A subgroup of th 44.4 19 0.00041 30.2 2.5 35 344-378 56-90 (120)
230 cd05014 SIS_Kpsf KpsF-like pro 43.3 17 0.00037 30.5 2.1 36 344-379 56-91 (128)
231 cd02070 corrinoid_protein_B12- 42.6 52 0.0011 30.5 5.4 80 298-386 104-186 (201)
232 TIGR01456 CECR5 HAD-superfamil 42.2 42 0.00092 33.6 5.1 50 338-387 8-65 (321)
233 COG0279 GmhA Phosphoheptose is 40.4 19 0.00042 32.0 1.9 33 348-380 122-154 (176)
234 KOG3085|consensus 38.8 72 0.0016 30.4 5.7 39 481-519 176-216 (237)
235 COG5012 Predicted cobalamin bi 38.3 42 0.00092 31.5 3.9 83 298-387 126-209 (227)
236 PF08645 PNK3P: Polynucleotide 34.8 31 0.00068 30.6 2.5 23 347-369 30-52 (159)
237 TIGR03127 RuMP_HxlB 6-phospho 34.5 51 0.0011 29.7 3.9 36 345-380 82-117 (179)
238 cd00860 ThrRS_anticodon ThrRS 34.0 82 0.0018 24.3 4.6 46 341-386 7-53 (91)
239 PF01380 SIS: SIS domain SIS d 33.4 61 0.0013 27.0 4.0 36 344-379 62-97 (131)
240 cd05006 SIS_GmhA Phosphoheptos 33.1 31 0.00066 31.1 2.2 32 345-376 111-142 (177)
241 PRK13747 putative mercury resi 32.6 26 0.00057 26.4 1.3 16 196-211 23-38 (78)
242 cd05013 SIS_RpiR RpiR-like pro 32.4 61 0.0013 27.2 3.9 31 348-378 73-103 (139)
243 KOG2257|consensus 31.8 1.2E+02 0.0025 25.9 5.1 43 68-111 5-49 (135)
244 PF07611 DUF1574: Protein of u 30.3 2E+02 0.0044 29.1 7.5 45 341-385 244-288 (345)
245 COG2185 Sbm Methylmalonyl-CoA 29.2 1.4E+02 0.0031 25.9 5.5 83 297-386 33-117 (143)
246 TIGR01647 ATPase-IIIA_H plasma 29.1 32 0.00069 39.0 1.9 59 200-265 243-301 (755)
247 PRK13937 phosphoheptose isomer 28.9 68 0.0015 29.3 3.8 34 345-378 116-149 (188)
248 PF12273 RCR: Chitin synthesis 28.4 56 0.0012 27.9 2.9 16 112-127 1-16 (130)
249 cd04724 Tryptophan_synthase_al 27.4 3.4E+02 0.0074 25.8 8.5 38 481-518 177-217 (242)
250 KOG2882|consensus 27.3 1.1E+02 0.0023 30.3 4.8 49 338-386 30-81 (306)
251 CHL00200 trpA tryptophan synth 27.2 5.8E+02 0.013 24.7 10.6 40 479-518 190-233 (263)
252 COG4996 Predicted phosphatase 26.7 94 0.002 26.6 3.7 44 344-387 39-82 (164)
253 cd05005 SIS_PHI Hexulose-6-pho 26.7 74 0.0016 28.6 3.6 36 344-379 84-119 (179)
254 TIGR00676 fadh2 5,10-methylene 26.0 2.5E+02 0.0054 27.3 7.4 84 291-374 15-99 (272)
255 TIGR00441 gmhA phosphoheptose 25.7 77 0.0017 27.8 3.4 31 346-376 90-120 (154)
256 PRK13938 phosphoheptose isomer 25.3 52 0.0011 30.4 2.3 31 347-377 125-155 (196)
257 cd04795 SIS SIS domain. SIS (S 25.3 1.2E+02 0.0025 23.1 4.1 25 345-369 57-81 (87)
258 PF02219 MTHFR: Methylenetetra 25.3 2.1E+02 0.0046 28.0 6.8 84 292-375 28-112 (287)
259 PRK00414 gmhA phosphoheptose i 25.1 55 0.0012 30.1 2.4 31 347-377 123-153 (192)
260 COG3707 AmiR Response regulato 24.8 4.3E+02 0.0093 24.3 7.9 79 297-386 22-101 (194)
261 PF05240 APOBEC_C: APOBEC-like 24.7 72 0.0016 22.8 2.3 25 349-373 2-26 (55)
262 KOG0203|consensus 23.9 46 0.001 37.4 1.8 27 247-273 347-373 (1019)
263 PF12017 Tnp_P_element: Transp 23.3 1.3E+02 0.0028 28.8 4.5 36 352-387 199-234 (236)
264 cd01019 ZnuA Zinc binding prot 23.1 1.9E+02 0.0042 28.3 6.0 52 334-385 197-252 (286)
265 PF02117 7TM_GPCR_Sra: Serpent 22.8 5.8E+02 0.013 25.6 9.5 20 204-223 283-302 (328)
266 PLN02591 tryptophan synthase 22.6 5.9E+02 0.013 24.5 9.0 40 478-517 176-219 (250)
267 PF03129 HGTP_anticodon: Antic 22.6 1.5E+02 0.0032 23.1 4.3 47 340-386 4-54 (94)
268 cd04906 ACT_ThrD-I_1 First of 22.2 1.1E+02 0.0024 23.7 3.4 34 340-373 43-77 (85)
269 COG3981 Predicted acetyltransf 21.9 1.3E+02 0.0028 27.0 3.9 44 333-376 76-144 (174)
270 TIGR03282 methan_mark_13 putat 21.8 2.6E+02 0.0056 28.2 6.4 149 196-372 107-261 (352)
271 PF00389 2-Hacid_dh: D-isomer 21.6 2.1E+02 0.0046 24.1 5.3 31 483-514 55-87 (133)
272 PF14163 SieB: Superinfection 21.5 1.6E+02 0.0035 25.7 4.6 21 84-105 7-27 (151)
273 TIGR02329 propionate_PrpR prop 21.4 3.4E+02 0.0073 29.4 7.8 81 292-386 85-165 (526)
274 PF14336 DUF4392: Domain of un 21.1 60 0.0013 32.1 1.9 38 348-385 62-100 (291)
275 PF13580 SIS_2: SIS domain; PD 21.1 70 0.0015 27.5 2.1 24 347-370 115-138 (138)
276 PF05052 MerE: MerE protein; 20.9 35 0.00076 25.6 0.2 15 197-211 24-38 (75)
277 cd00859 HisRS_anticodon HisRS 20.7 1.7E+02 0.0037 22.1 4.2 44 342-385 8-52 (91)
278 PF15013 CCSMST1: CCSMST1 fami 20.1 1.1E+02 0.0023 23.6 2.6 40 61-102 21-61 (77)
No 1
>KOG0208|consensus
Probab=100.00 E-value=8.5e-49 Score=411.11 Aligned_cols=317 Identities=49% Similarity=0.788 Sum_probs=276.9
Q ss_pred eeecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCC
Q psy78 179 EILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSR 258 (523)
Q Consensus 179 ~~~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~ 258 (523)
....|.++...++++++++++.+|||||++++++..+|..||+|+ ||+|.+|.
T Consensus 408 l~~~g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk---------------------------~IfCisP~ 460 (1140)
T KOG0208|consen 408 LNLLGVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKK---------------------------GIFCISPQ 460 (1140)
T ss_pred HHHcCCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhc---------------------------CeEEcCcc
Confidence 345788999999999999999999999999999999999999999 99999999
Q ss_pred ccccCCceeEEeecc-----------------------------------------------------------------
Q psy78 259 VINVSGSINCVCFDK----------------------------------------------------------------- 273 (523)
Q Consensus 259 ~~~~~~~v~~v~fDK----------------------------------------------------------------- 273 (523)
+++.+|+++++||||
T Consensus 461 rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~ 540 (1140)
T KOG0208|consen 461 RINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVAAMATCHSLTL 540 (1140)
T ss_pred ceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhhhhhhhhccceeeccccccCCchHHHHHHHhhhceeEE
Confidence 999999999999999
Q ss_pred -------------ccccccccccCCC------------------------------------------------------
Q psy78 274 -------------MFESTGWTLEEPM------------------------------------------------------ 286 (523)
Q Consensus 274 -------------~~~~~~~~~~~~~------------------------------------------------------ 286 (523)
+|+.++|..++.+
T Consensus 541 v~g~l~GDPLdlkmfe~t~w~~ee~~~~~~~~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv 620 (1140)
T KOG0208|consen 541 VDGTLVGDPLDLKMFESTGWVYEEADIEDEATREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIV 620 (1140)
T ss_pred eCCeeccCceeeeeeeccceEEEeccccchhhhhhCCccCCEeCCCcccccCCCcCCCcceEEEEecccchhhheEEEEE
Confidence 7788888764421
Q ss_pred -------------------------CcchhHHHHHHHHHhhccCeEEEEEEecCCch-hHHHhhhcchhhhhccceeeee
Q psy78 287 -------------------------KFVPENIVSVLSEYTEQGYRVIALASRTLSIE-DYKHLNYMKREDIEKDLEFLGL 340 (523)
Q Consensus 287 -------------------------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~-~~~~~~~~~~~~~e~dl~~lG~ 340 (523)
+++|+++++.+++|+.+|+|++++|+|.++.. +.+.+. .+|+.+|+|++|+|+
T Consensus 621 ~~~~e~~~~~ftKGaPE~I~~ic~p~tvP~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~-~~Rd~vEs~l~FlGL 699 (1140)
T KOG0208|consen 621 STGGEDKMMVFTKGAPESIAEICKPETVPADYQEVLKEYTHQGFRVIALASKELETSTLQKAQK-LSRDTVESNLEFLGL 699 (1140)
T ss_pred ecCCCCceEeeccCCHHHHHHhcCcccCCccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhh-ccHhhhhccceeeEE
Confidence 06789999999999999999999999999865 444444 899999999999999
Q ss_pred eeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhh
Q psy78 341 IILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQT 420 (523)
Q Consensus 341 i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~ 420 (523)
+.+++++|++++.+|++|.++.|+++|+|||+..||..+|++||+..+..+++...-...+.....++.|...+.+....
T Consensus 700 iVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~ 779 (1140)
T KOG0208|consen 700 IVMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFL 779 (1140)
T ss_pred EEeecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccC
Confidence 99999999999999999999999999999999999999999999999988888887776666666777777665554443
Q ss_pred hhhhcccCchhhh---hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEc
Q psy78 421 KAKKLNYSKTEEE---LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCG 497 (523)
Q Consensus 421 ~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~G 497 (523)
+............ +......++++++|+.+..+.+.+++.+..+..+..+|||++|.||.+.|+.+|+.+..|+|+|
T Consensus 780 ~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCG 859 (1140)
T KOG0208|consen 780 DPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCG 859 (1140)
T ss_pred CCCccCccccCCccChhhhccceeEEEecCchhHHHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecC
Confidence 3322222111111 3344567899999999999998889999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhCCccEEecccCCCCC
Q psy78 498 DGANDCGALRAAHAGISLSEAESPID 523 (523)
Q Consensus 498 DG~ND~~MLk~A~vGIAMgna~~~va 523 (523)
||.||+.+||+||+||+.+.|++++|
T Consensus 860 DGANDCgALKaAdvGISLSeaEASvA 885 (1140)
T KOG0208|consen 860 DGANDCGALKAADVGISLSEAEASVA 885 (1140)
T ss_pred CCcchhhhhhhcccCcchhhhhHhhc
Confidence 99999999999999999999999887
No 2
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2e-44 Score=410.76 Aligned_cols=342 Identities=38% Similarity=0.636 Sum_probs=238.1
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccc-------------------cceeeeeeehhh
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINS-------------------RVINLMTVGKLY 242 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~-------------------~t~~~m~v~~~~ 242 (523)
.+.++.+.+.+++++++++||||||+++|++++.|+.||+|+|++|.+. +|+|+|+|.+++
T Consensus 391 ~~~~~~~~~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~ 470 (1054)
T TIGR01657 391 DGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQ 470 (1054)
T ss_pred cCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEe
Confidence 4678889999999999999999999999999999999999997754222 677777777776
Q ss_pred hhhhcccc-c-----------------eeeecC---------Cc------------c----------------------c
Q psy78 243 ALTRLKKY-N-----------------ISCINS---------RV------------I----------------------N 261 (523)
Q Consensus 243 ~~~~~~~~-~-----------------il~~~~---------~~------------~----------------------~ 261 (523)
..+.-... + ..|.+. +. + .
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 550 (1054)
T TIGR01657 471 GLSGNQEFLKIVTEDSSLKPSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQ 550 (1054)
T ss_pred cccCccccccccccccccCchHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCc
Confidence 53210000 0 000000 00 0 0
Q ss_pred cCCceeEEeecccccccc--ccc-----------cCCC--------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhH
Q psy78 262 VSGSINCVCFDKMFESTG--WTL-----------EEPM--------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDY 320 (523)
Q Consensus 262 ~~~~v~~v~fDK~~~~~~--~~~-----------~~~~--------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~ 320 (523)
....++.+-||...+... .+. +.|+ .+.|+++.+.+++++++|+||+++|||+++....
T Consensus 551 ~~~il~~~pF~S~~krMsvvv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~ 630 (1054)
T TIGR01657 551 ELSIIRRFQFSSALQRMSVIVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTL 630 (1054)
T ss_pred eEEEEEEEeecCCCCEEEEEEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccch
Confidence 000112223333110000 000 0000 1467889999999999999999999999974322
Q ss_pred HHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCC
Q psy78 321 KHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPG 400 (523)
Q Consensus 321 ~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~ 400 (523)
......+|+.+|+|++|+|+++++|++||+++++|++|+++||+++|+|||++.||..+|+++||..+++.++..+....
T Consensus 631 ~~~~~~~r~~~E~~L~flGli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~ 710 (1054)
T TIGR01657 631 QKAQDLSRDAVESNLTFLGFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPP 710 (1054)
T ss_pred hhhhhccHHHHhcCceEEEEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccc
Confidence 22222578889999999999999999999999999999999999999999999999999999999876666655543322
Q ss_pred CCCCCCceEEEecCcchhhhhhhhcccCc-hhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhH
Q psy78 401 GLKECPKVYFTVSGVSAIQTKAKKLNYSK-TEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQK 479 (523)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K 479 (523)
.......+.|...+............... ...........+.++++|+.++.+.+..++.+.++..+..+|+|++|+||
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK 790 (1054)
T TIGR01657 711 ESGKPNQIKFEVIDSIPFASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQK 790 (1054)
T ss_pred cCCCCceEEEEecCccccccccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHH
Confidence 22233344554433211100000000000 00001112335678999999988877666677788888899999999999
Q ss_pred HHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCCC
Q psy78 480 QQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID 523 (523)
Q Consensus 480 ~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~va 523 (523)
..+|+.+++.|+.|+|+|||.||++|||+||+|||||+++.++|
T Consensus 791 ~~iV~~lq~~g~~V~m~GDG~ND~~ALK~AdVGIam~~~das~A 834 (1054)
T TIGR01657 791 ETLVELLQKLDYTVGMCGDGANDCGALKQADVGISLSEAEASVA 834 (1054)
T ss_pred HHHHHHHHhCCCeEEEEeCChHHHHHHHhcCcceeeccccceee
Confidence 99999999999999999999999999999999999999865543
No 3
>KOG0204|consensus
Probab=100.00 E-value=1.4e-40 Score=344.84 Aligned_cols=287 Identities=26% Similarity=0.405 Sum_probs=211.5
Q ss_pred CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc--------------cccc-----cceeeeeeehhhhh
Q psy78 184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS--------------CINS-----RVINLMTVGKLYAL 244 (523)
Q Consensus 184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~--------------~~~~-----~t~~~m~v~~~~~~ 244 (523)
..+.+.|+.+++++|+|+|+|||+|+|++++++++||.|.|++ +||| +|.|+|||.+-|..
T Consensus 380 ~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~ 459 (1034)
T KOG0204|consen 380 QEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIG 459 (1034)
T ss_pred HHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeec
Confidence 4567889999999999999999999999999999999999863 3666 89999999997764
Q ss_pred hhccc------------------cce-------eeec--C-CccccCCc--------------------------eeEEe
Q psy78 245 TRLKK------------------YNI-------SCIN--S-RVINVSGS--------------------------INCVC 270 (523)
Q Consensus 245 ~~~~~------------------~~i-------l~~~--~-~~~~~~~~--------------------------v~~v~ 270 (523)
++-.+ +|| ++++ + ...+.+|. .++.-
T Consensus 460 ~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~~~~~R~e~~v~kv~~ 539 (1034)
T KOG0204|consen 460 SEHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMDFQDVRPEEKVVKVYP 539 (1034)
T ss_pred cccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCcchHhhcchhheeEEec
Confidence 44322 111 1110 0 01111111 00111
Q ss_pred ecc-------ccc--ccc----c-------------cccCCC------CcchhHHHHHHHHHhhccCeEEEEEEecCCch
Q psy78 271 FDK-------MFE--STG----W-------------TLEEPM------KFVPENIVSVLSEYTEQGYRVIALASRTLSIE 318 (523)
Q Consensus 271 fDK-------~~~--~~~----~-------------~~~~~~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~ 318 (523)
|.. ..+ ..+ | .++... +.....+++.++.|+++|+|++++|||++...
T Consensus 540 FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~~~~~~~Ie~mA~~~LRti~lAy~df~~~ 619 (1034)
T KOG0204|consen 540 FNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDRKSFKDVIEPMASEGLRTICLAYRDFVAG 619 (1034)
T ss_pred cCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHHHHHHHHHHHHHHhhhheeeEEeeccccC
Confidence 111 000 000 0 000000 12234678899999999999999999997544
Q ss_pred hHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecC
Q psy78 319 DYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAV 398 (523)
Q Consensus 319 ~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~ 398 (523)
+.+..+..+.+..+.+++++|+++++||.||++++|++.||++|+.|-|+|||+..||++||.+|||..+++..++..|
T Consensus 620 ~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG- 698 (1034)
T KOG0204|consen 620 PDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEG- 698 (1034)
T ss_pred CCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecc-
Confidence 2111111223567889999999999999999999999999999999999999999999999999999876654444433
Q ss_pred CCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHh
Q psy78 399 PGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQ 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~ 478 (523)
+++..+ .+++..+++.+..+.+|.+|.+
T Consensus 699 -------------------------------------------------~eFr~~---s~ee~~~i~pkl~VlARSSP~D 726 (1034)
T KOG0204|consen 699 -------------------------------------------------KEFREL---SQEERDKIWPKLRVLARSSPND 726 (1034)
T ss_pred -------------------------------------------------hhhhhc---CHHHHHhhhhhheeeecCCCch
Confidence 333322 1234455666678999999999
Q ss_pred HHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCCC
Q psy78 479 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID 523 (523)
Q Consensus 479 K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~va 523 (523)
|...++.|++.++.|++.|||.||.|+|+.||+|.|||-|..+||
T Consensus 727 K~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVA 771 (1034)
T KOG0204|consen 727 KHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVA 771 (1034)
T ss_pred HHHHHHHHHhcCcEEEEecCCCCCchhhhhcccchhccccchhhh
Confidence 999999999999999999999999999999999999999999987
No 4
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=370.53 Aligned_cols=279 Identities=30% Similarity=0.471 Sum_probs=212.5
Q ss_pred hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhhhhh-
Q psy78 186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLYALT- 245 (523)
Q Consensus 186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~~~~- 245 (523)
+.+++.++++++++++|+|||+.++++++.|+.+|+|+|++ |+++ +|+|+|+|.+++..+
T Consensus 295 ~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~ 374 (917)
T COG0474 295 LLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGG 374 (917)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCC
Confidence 78999999999999999999999999999999999999984 4444 899999999999884
Q ss_pred -h---------------ccccceeeecCCcc-------------------cc---------CCc----eeEEeecccccc
Q psy78 246 -R---------------LKKYNISCINSRVI-------------------NV---------SGS----INCVCFDKMFES 277 (523)
Q Consensus 246 -~---------------~~~~~il~~~~~~~-------------------~~---------~~~----v~~v~fDK~~~~ 277 (523)
. +.....+|.+.... +. +.. ++.+.||...+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~~~~gdptE~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~rKr 454 (917)
T COG0474 375 GKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGWYQAGDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERKR 454 (917)
T ss_pred cccccccccccchHHHHHHHHHHhcCcccccccCceecCCccHHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCCceE
Confidence 1 01111133321111 00 111 556666661111
Q ss_pred cccccc------------CC----------------CCcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchh
Q psy78 278 TGWTLE------------EP----------------MKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKRE 329 (523)
Q Consensus 278 ~~~~~~------------~~----------------~~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~ 329 (523)
.....+ .+ .++.++.+.+..++++++|+|++++|||.++...... ..+
T Consensus 455 Msviv~~~~~~~~~~~KGApe~il~~~~~~~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~----~~~ 530 (917)
T COG0474 455 MSVIVKTDEGKYILFVKGAPEVILERCKSIGELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDD----EVD 530 (917)
T ss_pred EEEEEEcCCCcEEEEEcCChHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc----hhh
Confidence 100000 00 0133467778889999999999999999775432211 116
Q ss_pred hhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceE
Q psy78 330 DIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVY 409 (523)
Q Consensus 330 ~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~ 409 (523)
..|+|+.|+|+++++||+|+++++||+.|+++||+++|+|||+..||.++|+++|+......
T Consensus 531 ~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~------------------ 592 (917)
T COG0474 531 EIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAES------------------ 592 (917)
T ss_pred hhhccceeehhhhccCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCc------------------
Confidence 78999999999999999999999999999999999999999999999999999998532211
Q ss_pred EEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC
Q psy78 410 FTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL 489 (523)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~ 489 (523)
.++++|.+++.+.+. .+.+.+.+..+|||++|+||..+|+.||++
T Consensus 593 --------------------------------~~vi~G~el~~l~~~---el~~~~~~~~VfARvsP~qK~~IV~~lq~~ 637 (917)
T COG0474 593 --------------------------------ALVIDGAELDALSDE---ELAELVEELSVFARVSPEQKARIVEALQKS 637 (917)
T ss_pred --------------------------------eeEeehHHhhhcCHH---HHHHHhhhCcEEEEcCHHHHHHHHHHHHhC
Confidence 345666666655443 445555566799999999999999999999
Q ss_pred CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 490 GYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 490 ~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
|+.|+|+|||.||+||||.||+|||||....+
T Consensus 638 g~vVamtGDGvNDapALk~ADVGIamg~~Gtd 669 (917)
T COG0474 638 GHVVAMTGDGVNDAPALKAADVGIAMGGEGTD 669 (917)
T ss_pred CCEEEEeCCCchhHHHHHhcCccEEecccHHH
Confidence 99999999999999999999999999974443
No 5
>KOG0202|consensus
Probab=100.00 E-value=5.4e-39 Score=333.57 Aligned_cols=289 Identities=28% Similarity=0.394 Sum_probs=211.5
Q ss_pred CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc--------------cccc-----cceeeeeeehhhhh
Q psy78 184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS--------------CINS-----RVINLMTVGKLYAL 244 (523)
Q Consensus 184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~--------------~~~~-----~t~~~m~v~~~~~~ 244 (523)
..+.+-|..|+++.|+|+|+|||+.+|++++.|.+||+|+|++ +||| +|+|+|||.++|..
T Consensus 277 k~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~ 356 (972)
T KOG0202|consen 277 KGALYYFKIAVSLAVAAIPEGLPAVVTTTLALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIP 356 (972)
T ss_pred hchhhhhhHHHHHHHHhccCCCcchhhhhHHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEec
Confidence 5667889999999999999999999999999999999999973 3555 89999999999985
Q ss_pred hhccc----c----------ceeeecC----------CccccCCceeEEeecc---------------------------
Q psy78 245 TRLKK----Y----------NISCINS----------RVINVSGSINCVCFDK--------------------------- 273 (523)
Q Consensus 245 ~~~~~----~----------~il~~~~----------~~~~~~~~v~~v~fDK--------------------------- 273 (523)
..... + |=..++. +.+..+..+-.+|.|-
T Consensus 357 ~~~~~~~~~f~~tg~ty~~~g~v~~~~~~~~~~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeK 436 (972)
T KOG0202|consen 357 DGGTATVDEFNPTGTTYSPEGEVFKDGLYEKDKAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEK 436 (972)
T ss_pred ccccccccccccCCceeCCCCceEecCccccccccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHH
Confidence 44310 0 0001110 1122222333444333
Q ss_pred --cccc---cc-----------cc---------------------cc--CC---C-------------------------
Q psy78 274 --MFES---TG-----------WT---------------------LE--EP---M------------------------- 286 (523)
Q Consensus 274 --~~~~---~~-----------~~---------------------~~--~~---~------------------------- 286 (523)
.+.. .. |+ .. .+ .
T Consensus 437 m~l~~~~~~~~s~~~~~~c~~~~~~~~~~~~elpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~ 516 (972)
T KOG0202|consen 437 MGLPGTRSTNLSNEEASACNRVYSRLFKKIAELPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQT 516 (972)
T ss_pred cCCCcchhhcccccccccchhHHHHhhhheeEeecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCce
Confidence 0000 00 00 00 00 0
Q ss_pred -----CcchhHHHHHHHHHhhccCeEEEEEEecCCc-h--hHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHH
Q psy78 287 -----KFVPENIVSVLSEYTEQGYRVIALASRTLSI-E--DYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKEL 358 (523)
Q Consensus 287 -----~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~-~--~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~L 358 (523)
...++.+.+...+++++|+|++++|+++.+. . .....+..++...|+||+|+|++++.||+|+++++||+.|
T Consensus 517 ~~pLt~~~re~il~~~~~~g~~gLRvLalA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c 596 (972)
T KOG0202|consen 517 KVPLTQASRETILANVYEMGSEGLRVLALASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELC 596 (972)
T ss_pred eeeCcHHHHHHHHHHHHHHhhccceEEEEEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHH
Confidence 0234667778889999999999999998763 2 1222233467789999999999999999999999999999
Q ss_pred HhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCC
Q psy78 359 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSS 438 (523)
Q Consensus 359 k~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (523)
+++||+|.|+|||+..||.+|++++|+...+..+
T Consensus 597 ~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~---------------------------------------------- 630 (972)
T KOG0202|consen 597 RQAGIRVIMITGDNKETAEAIAREIGIFSEDEDV---------------------------------------------- 630 (972)
T ss_pred HHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccc----------------------------------------------
Confidence 9999999999999999999999999986433210
Q ss_pred CceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEeccc
Q psy78 439 GAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518 (523)
Q Consensus 439 ~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna 518 (523)
....++|.+++.+.+ +..........+|+|++|.+|..+|+.|++.++.|+|.|||.||+|+||.||+|||||..
T Consensus 631 --~~~~~TG~efD~ls~---~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~ 705 (972)
T KOG0202|consen 631 --SSMALTGSEFDDLSD---EELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGIS 705 (972)
T ss_pred --cccccchhhhhcCCH---HHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCC
Confidence 011234554443322 223334455679999999999999999999999999999999999999999999999966
Q ss_pred CCCCC
Q psy78 519 ESPID 523 (523)
Q Consensus 519 ~~~va 523 (523)
..+||
T Consensus 706 GTdVa 710 (972)
T KOG0202|consen 706 GTDVA 710 (972)
T ss_pred ccHhh
Confidence 66654
No 6
>KOG0209|consensus
Probab=100.00 E-value=2.1e-38 Score=326.42 Aligned_cols=314 Identities=33% Similarity=0.566 Sum_probs=247.9
Q ss_pred HhccCCCCCCCCCCCCCcceeecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeee
Q psy78 160 ELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVG 239 (523)
Q Consensus 160 ~~~~~~~wp~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~ 239 (523)
-.+..+-|-.-+++|. ++-.+.++-+.-||+..+|+.||+.+++++..++..|+|.
T Consensus 408 iaAa~Yvwv~Gskd~~--------RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsSL~ALak~---------------- 463 (1160)
T KOG0209|consen 408 IAAAGYVWVEGSKDPT--------RSRYKLFLECTLILTSVVPPELPMELSMAVNSSLIALAKL---------------- 463 (1160)
T ss_pred HHhhheEEEecccCcc--------hhhhheeeeeeEEEeccCCCCCchhhhHHHHHHHHHHHHh----------------
Confidence 3456677877777763 4556778889999999999999999999999999999999
Q ss_pred hhhhhhhccccceeeecCCccccCCceeEEeecc----------------------------------------------
Q psy78 240 KLYALTRLKKYNISCINSRVINVSGSINCVCFDK---------------------------------------------- 273 (523)
Q Consensus 240 ~~~~~~~~~~~~il~~~~~~~~~~~~v~~v~fDK---------------------------------------------- 273 (523)
||+|..|-++.-+|+++.+||||
T Consensus 464 -----------~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~s~~p~~t~~vlAscHsLv~ 532 (1160)
T KOG0209|consen 464 -----------GVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPASKAPNETVLVLASCHSLVL 532 (1160)
T ss_pred -----------ceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccchhhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999
Q ss_pred -------------ccccccccccCCC------------------------------------------------------
Q psy78 274 -------------MFESTGWTLEEPM------------------------------------------------------ 286 (523)
Q Consensus 274 -------------~~~~~~~~~~~~~------------------------------------------------------ 286 (523)
.++..+|.++..+
T Consensus 533 le~~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~~lkI~~ryhFsSaLKRmsvva~~~~~g~s~k~~~aVKGAPEvi~ 612 (1160)
T KOG0209|consen 533 LEDKLVGDPLEKATLEAVGWNLEKKNSVCPREGNGKKLKIIQRYHFSSALKRMSVVASHQGPGSSEKYFVAVKGAPEVIQ 612 (1160)
T ss_pred hcCcccCChHHHHHHHhcCcccccCcccCCCcCCCcccchhhhhhHHHHHHHHHhhhhcccCCCceEEEEEecCCHHHHH
Confidence 2333444433221
Q ss_pred ---CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC
Q psy78 287 ---KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV 363 (523)
Q Consensus 287 ---~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi 363 (523)
+++|.++++...+++++|.||+++|+|++..-........+|+.+|+||+|.|++.+..|++++++++|++|++++|
T Consensus 613 ~ml~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFaGFlif~CPlK~Ds~~~I~el~~SSH 692 (1160)
T KOG0209|consen 613 EMLRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFAGFLIFSCPLKPDSKKTIKELNNSSH 692 (1160)
T ss_pred HHHHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceeeeeEEEeCCCCccHHHHHHHHhccCc
Confidence 16788999999999999999999999999743333333478999999999999999999999999999999999999
Q ss_pred cEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEE
Q psy78 364 KVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKF 443 (523)
Q Consensus 364 ~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 443 (523)
+++|+|||++.||..+|+++||......++...+ ..++.++.|...+....... .+..... .-...+.+
T Consensus 693 ~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~----~~~~~~~~w~s~d~t~~lp~------~p~~~~~-~l~~~~dl 761 (1160)
T KOG0209|consen 693 RVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPE----EGDGNQLEWVSVDGTIVLPL------KPGKKKT-LLAETHDL 761 (1160)
T ss_pred eEEEEeCCCccchheehheeeeeccCceeeccCc----cCCCceeeEecCCCceeecC------CCCccch-hhhhhhhh
Confidence 9999999999999999999999754444443322 22344556655443221110 0000000 12234668
Q ss_pred EEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 444 AVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 444 ~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
+++|..++.+.+.. ....+.....+|+|+.|+||..+|..+++.|..++|+|||.||+.+||+||||||.-|+.++
T Consensus 762 citG~~l~~l~~~~--~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVALL~~~~e 837 (1160)
T KOG0209|consen 762 CITGSALDHLQATD--QLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVALLNNPEE 837 (1160)
T ss_pred hcchhHHHHHhhhH--HHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceehhcCChh
Confidence 89999998887643 44555556689999999999999999999999999999999999999999999999888763
No 7
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=1.8e-38 Score=354.95 Aligned_cols=280 Identities=20% Similarity=0.301 Sum_probs=202.2
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY 242 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~ 242 (523)
.+.++.+++.+++++++++||||||+++|++++.|+.+|+|+|++ |+++ +|+|+|+|.+++
T Consensus 312 ~~~~~~~~l~~aisl~V~~~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~ 391 (903)
T PRK15122 312 TKGDWLEALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHL 391 (903)
T ss_pred ccCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEE
Confidence 456889999999999999999999999999999999999999973 4444 899999998876
Q ss_pred hhh-----hccccceee-------ecCC---------------ccccCCceeEEeecccccc--------cc-c-cc--c
Q psy78 243 ALT-----RLKKYNISC-------INSR---------------VINVSGSINCVCFDKMFES--------TG-W-TL--E 283 (523)
Q Consensus 243 ~~~-----~~~~~~il~-------~~~~---------------~~~~~~~v~~v~fDK~~~~--------~~-~-~~--~ 283 (523)
..+ ++.+...+. .++- ..+...+++.+.||...+. .+ . .. .
T Consensus 392 ~~~~~~~~~~l~~a~l~s~~~~~~~~p~e~All~~a~~~~~~~~~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KG 471 (903)
T PRK15122 392 DVSGRKDERVLQLAWLNSFHQSGMKNLMDQAVVAFAEGNPEIVKPAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKG 471 (903)
T ss_pred cCCCCChHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHcCchhhhhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECC
Confidence 421 111111100 0000 0011234555566641110 00 0 00 0
Q ss_pred CC-------------C------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeec
Q psy78 284 EP-------------M------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILE 344 (523)
Q Consensus 284 ~~-------------~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~ 344 (523)
.+ . .+.++.+.+..++++++|+|++++|+|+++.++... ..++..|+|++|+|+++++
T Consensus 472 a~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~---~~~~~~e~~l~~lGli~l~ 548 (903)
T PRK15122 472 AVEEMLAVATHVRDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRA---QYSTADERDLVIRGFLTFL 548 (903)
T ss_pred cHHHHHHhchhhhcCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCcccccc---ccccccccCcEEEEEEecc
Confidence 00 0 011234566778899999999999999886432110 1223457899999999999
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
|++||+++++|++|+++||+++|+|||++.+|..+|+++||.. +.+
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~v-------------------------------- 594 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEP-------------------------------- 594 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCc--------------------------------
Confidence 9999999999999999999999999999999999999999952 111
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG 504 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~ 504 (523)
++|.+++.+. .+.+.+...+..+++|++|+||..+|+.|++.|+.|+|+|||.||+|
T Consensus 595 --------------------i~G~el~~~~---~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtGDGvNDaP 651 (903)
T PRK15122 595 --------------------LLGTEIEAMD---DAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGINDAP 651 (903)
T ss_pred --------------------cchHhhhhCC---HHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEECCCchhHH
Confidence 2233332221 12344445556799999999999999999999999999999999999
Q ss_pred HHHhCCccEEecccCCCC
Q psy78 505 ALRAAHAGISLSEAESPI 522 (523)
Q Consensus 505 MLk~A~vGIAMgna~~~v 522 (523)
+|++||+|||||++ .++
T Consensus 652 ALk~ADVGIAmg~g-tdv 668 (903)
T PRK15122 652 ALRDADVGISVDSG-ADI 668 (903)
T ss_pred HHHhCCEEEEeCcc-cHH
Confidence 99999999999964 443
No 8
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=1.6e-38 Score=354.83 Aligned_cols=276 Identities=25% Similarity=0.329 Sum_probs=194.7
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY 242 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~ 242 (523)
.+.++.+++.+++++++++||||||+++|++++.|+.+|+|+|++ |+++ +|+|+|+|++.+
T Consensus 314 ~~~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~ 393 (902)
T PRK10517 314 TKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHT 393 (902)
T ss_pred hcCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEe
Confidence 456788999999999999999999999999999999999999763 4444 788888877653
Q ss_pred hh-----hhccccceee-------ecC---------------CccccCCceeEEeecccccccc--cc--------c--c
Q psy78 243 AL-----TRLKKYNISC-------INS---------------RVINVSGSINCVCFDKMFESTG--WT--------L--E 283 (523)
Q Consensus 243 ~~-----~~~~~~~il~-------~~~---------------~~~~~~~~v~~v~fDK~~~~~~--~~--------~--~ 283 (523)
.. +++.+...+. .|+ ...+...+++.+.||...+... .. . .
T Consensus 394 ~~~~~~~~~ll~~a~l~~~~~~~~~~p~d~All~~a~~~~~~~~~~~~~~~~~~pFds~~k~msvvv~~~~~~~~~~~KG 473 (902)
T PRK10517 394 DISGKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGVDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLICKG 473 (902)
T ss_pred cCCCCCHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHhcchhhhhhcCceEEEeeeCCCcceEEEEEEECCCeEEEEEeC
Confidence 21 1111100000 000 0001112333444444110000 00 0 0
Q ss_pred CC-------------C------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeec
Q psy78 284 EP-------------M------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILE 344 (523)
Q Consensus 284 ~~-------------~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~ 344 (523)
.+ + ++..+.+.+..++++++|+|++++|+|+++.+... ..+ ..|+|++++|+++++
T Consensus 474 a~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~----~~~-~~e~~l~~lGli~~~ 548 (902)
T PRK10517 474 ALEEILNVCSQVRHNGEIVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGD----YQR-ADESDLILEGYIAFL 548 (902)
T ss_pred chHHHHHhchhhhcCCCeecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccc----ccc-ccccCceeeehHhhh
Confidence 00 0 01123455667889999999999999988643211 111 237899999999999
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
|++||+++++|++|+++|++++|+|||++.+|..+|+++||+. +.+
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v-------------------------------- 594 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEV-------------------------------- 594 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCc--------------------------------
Confidence 9999999999999999999999999999999999999999952 111
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG 504 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~ 504 (523)
++|.+++.+. .+.+.....+..+++|++|+||.++|+.+++.|+.|+|+|||.||+|
T Consensus 595 --------------------~~G~el~~l~---~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaP 651 (902)
T PRK10517 595 --------------------LIGSDIETLS---DDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAP 651 (902)
T ss_pred --------------------eeHHHHHhCC---HHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHH
Confidence 2233322221 12334445556799999999999999999999999999999999999
Q ss_pred HHHhCCccEEecccC
Q psy78 505 ALRAAHAGISLSEAE 519 (523)
Q Consensus 505 MLk~A~vGIAMgna~ 519 (523)
+|++||+|||||++.
T Consensus 652 ALk~ADVGIAmg~gt 666 (902)
T PRK10517 652 ALRAADIGISVDGAV 666 (902)
T ss_pred HHHhCCEEEEeCCcC
Confidence 999999999999653
No 9
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=1.1e-37 Score=348.25 Aligned_cols=275 Identities=24% Similarity=0.291 Sum_probs=193.1
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY 242 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~ 242 (523)
.+.++.+++.+++++++++||||||+++|++++.|+.||+|+|++ |+++ +|+|+|+|.+++
T Consensus 279 ~~~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~ 358 (867)
T TIGR01524 279 MKGDWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHI 358 (867)
T ss_pred hcCCHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEe
Confidence 456788999999999999999999999999999999999999763 3333 677777777664
Q ss_pred hh-----hhccccceee-------ecCC--cc-------------ccCCceeEEeeccccccccccccC-----------
Q psy78 243 AL-----TRLKKYNISC-------INSR--VI-------------NVSGSINCVCFDKMFESTGWTLEE----------- 284 (523)
Q Consensus 243 ~~-----~~~~~~~il~-------~~~~--~~-------------~~~~~v~~v~fDK~~~~~~~~~~~----------- 284 (523)
.. +++.....+. .++- ++ ....+++.+.||...+......++
T Consensus 359 ~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~Al~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~ms~~v~~~~~~~~~~~KG 438 (867)
T TIGR01524 359 DSSGETSERVLKMAWLNSYFQTGWKNVLDHAVLAKLDESAARQTASRWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKG 438 (867)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhchhhHhhcCceEEEeccCCCcCEEEEEEEcCCceEEEEEeC
Confidence 21 1111100000 0000 00 011122333443310000000000
Q ss_pred --------------CC------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeec
Q psy78 285 --------------PM------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILE 344 (523)
Q Consensus 285 --------------~~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~ 344 (523)
.+ ++.++++.+..++++++|+|++++|+|+++.++.. .. +..|+|++++|+++++
T Consensus 439 a~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~----~~-~~~e~~l~~lGli~l~ 513 (867)
T TIGR01524 439 AVEEMLTVCTHKRFGGAVVTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEAD----FT-KTDEEQLIIEGFLGFL 513 (867)
T ss_pred cHHHHHHhchhhhcCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCccccc----cc-ccccCCcEEEEEEEee
Confidence 00 01134566677889999999999999988653211 11 1237899999999999
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
|++|++++++|++|+++||+++|+|||+..+|..+|+++|+... .+
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~--~v-------------------------------- 559 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDAN--DF-------------------------------- 559 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCC--Ce--------------------------------
Confidence 99999999999999999999999999999999999999999631 11
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG 504 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~ 504 (523)
++|.+++.+. .+.+.+...+..+++|++|+||.++|+.+|+.|+.|+|+|||.||+|
T Consensus 560 --------------------~~g~~l~~~~---~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDap 616 (867)
T TIGR01524 560 --------------------LLGADIEELS---DEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAP 616 (867)
T ss_pred --------------------eecHhhhhCC---HHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHH
Confidence 1222222111 12333445556799999999999999999999999999999999999
Q ss_pred HHHhCCccEEeccc
Q psy78 505 ALRAAHAGISLSEA 518 (523)
Q Consensus 505 MLk~A~vGIAMgna 518 (523)
||+.||+|||||+|
T Consensus 617 ALk~AdVGIAmg~g 630 (867)
T TIGR01524 617 ALRKADVGISVDTA 630 (867)
T ss_pred HHHhCCEEEEeCCc
Confidence 99999999999965
No 10
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=1.3e-37 Score=351.64 Aligned_cols=277 Identities=27% Similarity=0.403 Sum_probs=197.9
Q ss_pred chHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhhhhh
Q psy78 185 SLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLYALT 245 (523)
Q Consensus 185 ~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~~~~ 245 (523)
++.+++.+++++++++||||||+++|++++.|+.+|+|+|++ |+++ +|+|+|+|.+++..+
T Consensus 322 ~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~ 401 (941)
T TIGR01517 322 TFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGE 401 (941)
T ss_pred HHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEec
Confidence 578899999999999999999999999999999999999874 4444 899999998887543
Q ss_pred hc-----------------cccceeeecCCcc---------------c-----c--------------CCceeEEeeccc
Q psy78 246 RL-----------------KKYNISCINSRVI---------------N-----V--------------SGSINCVCFDKM 274 (523)
Q Consensus 246 ~~-----------------~~~~il~~~~~~~---------------~-----~--------------~~~v~~v~fDK~ 274 (523)
.. ....+.|.+.... | . ...+..+-||..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~ 481 (941)
T TIGR01517 402 QRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRGGKRAFIGSKTECALLGFLLLLGRDYQEVRAEEKVVKIYPFNSE 481 (941)
T ss_pred ceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCCCccccCCCccHHHHHHHHHHcCCCHHHHHhhchhccccccCCC
Confidence 11 0000111110000 0 0 001122233320
Q ss_pred ccc--c------c-ccc---cCC--------------CC-----cchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHh
Q psy78 275 FES--T------G-WTL---EEP--------------MK-----FVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHL 323 (523)
Q Consensus 275 ~~~--~------~-~~~---~~~--------------~~-----~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~ 323 (523)
.+. + + ... ..+ .. +.++++.+.+++++++|+|++++|+|.++.+...
T Consensus 482 ~k~msvv~~~~~~~~~~~~KGA~e~il~~c~~~~~~~g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~-- 559 (941)
T TIGR01517 482 RKFMSVVVKHSGGKVREFRKGASEIVLKPCRKRLDSNGEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFP-- 559 (941)
T ss_pred CCeEEEEEEeCCCcEEEEEECChHHHHHhhhHHhhcCCCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccc--
Confidence 000 0 0 000 000 00 0134567778899999999999999998643211
Q ss_pred hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCC
Q psy78 324 NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLK 403 (523)
Q Consensus 324 ~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~ 403 (523)
..+..|+|++|+|+++++|++|++++++|++||++|++++|+|||++.+|..+|+++|+..++..
T Consensus 560 ---~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~------------ 624 (941)
T TIGR01517 560 ---RKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGL------------ 624 (941)
T ss_pred ---cccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCce------------
Confidence 12234789999999999999999999999999999999999999999999999999999753322
Q ss_pred CCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHH
Q psy78 404 ECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLV 483 (523)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i 483 (523)
+++|++++.+. .+.+.....+..+++|++|+||..+|
T Consensus 625 ----------------------------------------vi~G~~~~~l~---~~el~~~i~~~~Vfar~sPe~K~~iV 661 (941)
T TIGR01517 625 ----------------------------------------AMEGKEFRRLV---YEEMDPILPKLRVLARSSPLDKQLLV 661 (941)
T ss_pred ----------------------------------------EeeHHHhhhCC---HHHHHHHhccCeEEEECCHHHHHHHH
Confidence 22333332221 12334445566899999999999999
Q ss_pred HHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 484 LELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 484 ~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
+.+++.|+.|+|+|||.||+|||++||+|||||.+..+
T Consensus 662 ~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~gtd 699 (941)
T TIGR01517 662 LMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISGTE 699 (941)
T ss_pred HHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCccH
Confidence 99999999999999999999999999999999944343
No 11
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=1.1e-36 Score=345.01 Aligned_cols=310 Identities=26% Similarity=0.316 Sum_probs=212.7
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY 242 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~ 242 (523)
.+.++.+++.+++++++++||||||+++|++++.++.+|+|+|++ |+++ +|+|+|+|.++|
T Consensus 287 ~~~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~ 366 (997)
T TIGR01106 287 LGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 366 (997)
T ss_pred hcCCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEE
Confidence 567888999999999999999999999999999999999999984 4444 899999999988
Q ss_pred hhhhc------------------------cccceeeecCC------c------------c-------------------c
Q psy78 243 ALTRL------------------------KKYNISCINSR------V------------I-------------------N 261 (523)
Q Consensus 243 ~~~~~------------------------~~~~il~~~~~------~------------~-------------------~ 261 (523)
..+.. .....+|.+.. . . +
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alcn~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~~~~~ 446 (997)
T TIGR01106 367 FDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVMEMRE 446 (997)
T ss_pred ECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHcCCCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHHHHHh
Confidence 53321 11112232110 0 0 0
Q ss_pred cCCceeEEeecccccc--c--------c--ccc---cCCC-------------------CcchhHHHHHHHHHhhccCeE
Q psy78 262 VSGSINCVCFDKMFES--T--------G--WTL---EEPM-------------------KFVPENIVSVLSEYTEQGYRV 307 (523)
Q Consensus 262 ~~~~v~~v~fDK~~~~--~--------~--~~~---~~~~-------------------~~~~~~~~~~~~~~~~~G~r~ 307 (523)
...++..+.||...+. + + ..+ ..++ .+.++.+.+.+++++++|+|+
T Consensus 447 ~~~~v~~~pF~s~rK~m~~v~~~~~~~~~~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRv 526 (997)
T TIGR01106 447 RNPKVVEIPFNSTNKYQLSIHENEDPRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERV 526 (997)
T ss_pred hCceeEEeccCCCCceEEEEEeccCCCCceEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 1112333445441110 0 0 000 0000 012345677788899999999
Q ss_pred EEEEEecCCchhHHHhhhcch---hhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcC
Q psy78 308 IALASRTLSIEDYKHLNYMKR---EDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG 384 (523)
Q Consensus 308 l~~a~k~l~~~~~~~~~~~~~---~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lg 384 (523)
+++|+|.++.+........++ +..|+|++|+|+++++||+|++++++|++|+++|++++|+|||++.+|.++++++|
T Consensus 527 la~A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~g 606 (997)
T TIGR01106 527 LGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG 606 (997)
T ss_pred EEEEEeecCcccccccccccchhhhccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 999999986532111000111 23489999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhh
Q psy78 385 IIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRI 464 (523)
Q Consensus 385 i~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~ 464 (523)
+..++.... .+ +.. ...... +..........+++|++++.+.+ +.+.+.
T Consensus 607 i~~~~~~~~-------~~---------------i~~---~~~~~~---~~~~~~~~~~~vi~G~~l~~l~~---~el~~~ 655 (997)
T TIGR01106 607 IISEGNETV-------ED---------------IAA---RLNIPV---SQVNPRDAKACVVHGSDLKDMTS---EQLDEI 655 (997)
T ss_pred CCCCCccch-------hh---------------hhh---hccccc---cccccccccceEEEhHHhhhCCH---HHHHHH
Confidence 975432210 00 000 000000 00000111236788888776543 233444
Q ss_pred hccc--EEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 465 IVKG--AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 465 ~~~~--~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
..+. .+++|++|+||..+|+.+++.|+.|+|+|||.||+|||+.||+|||||++..++
T Consensus 656 ~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~v 715 (997)
T TIGR01106 656 LKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDV 715 (997)
T ss_pred HHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcccHH
Confidence 4332 499999999999999999999999999999999999999999999999765554
No 12
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.1e-36 Score=336.14 Aligned_cols=270 Identities=24% Similarity=0.356 Sum_probs=189.0
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY 242 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~ 242 (523)
.+.++.+++.+++++++++||||||+++|++++.|+.||+|+|++ |+++ +|+|+|+|.+++
T Consensus 229 ~~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~ 308 (755)
T TIGR01647 229 RGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEIL 308 (755)
T ss_pred cCCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEEcccHHHHhccCCcEEEecCCCccccCceEEEEEE
Confidence 567889999999999999999999999999999999999999763 3443 677777777776
Q ss_pred hhhh------ccccceeee---cCCc----c-----------ccCCceeEEeecccccc--cccc---------c--cCC
Q psy78 243 ALTR------LKKYNISCI---NSRV----I-----------NVSGSINCVCFDKMFES--TGWT---------L--EEP 285 (523)
Q Consensus 243 ~~~~------~~~~~il~~---~~~~----~-----------~~~~~v~~v~fDK~~~~--~~~~---------~--~~~ 285 (523)
..+. +.....++. +.+. + +....++...||...+. +.+. . ..+
T Consensus 309 ~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~~~~~~~~~~pf~~~~k~~~~~v~~~~~g~~~~~~kGa~ 388 (755)
T TIGR01647 309 PFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEARDGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAP 388 (755)
T ss_pred ecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHHhcCceEEEeccCCCCCeEEEEEEeCCCceEEEEEeCCh
Confidence 4321 111111111 0000 0 00112233334320000 0000 0 000
Q ss_pred C---------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHH
Q psy78 286 M---------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIK 356 (523)
Q Consensus 286 ~---------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~ 356 (523)
+ .+.++++.+.+++++++|+|++++|++. .+++++++|+++++|++||+++++|+
T Consensus 389 e~il~~c~~~~~~~~~~~~~~~~~~~~G~rvl~vA~~~----------------~e~~l~~~Gli~l~Dp~R~~a~~aI~ 452 (755)
T TIGR01647 389 QVILDLCDNKKEIEEKVEEKVDELASRGYRALGVARTD----------------EEGRWHFLGLLPLFDPPRHDTKETIE 452 (755)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhCCCEEEEEEEEc----------------CCCCcEEEEEeeccCCChhhHHHHHH
Confidence 0 0123456667788999999999999872 14689999999999999999999999
Q ss_pred HHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhcc
Q psy78 357 ELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGL 436 (523)
Q Consensus 357 ~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (523)
+||++|++++|+|||++.+|..+|+++||..+ ++ .+.. .
T Consensus 453 ~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~---~~--~~~~------------------l------------------ 491 (755)
T TIGR01647 453 RARHLGVEVKMVTGDHLAIAKETARRLGLGTN---IY--TADV------------------L------------------ 491 (755)
T ss_pred HHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC---Cc--CHHH------------------h------------------
Confidence 99999999999999999999999999999631 00 0000 0
Q ss_pred CCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec
Q psy78 437 SSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS 516 (523)
Q Consensus 437 ~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg 516 (523)
.++++.+. ...+.+.+...+..+++|++|+||..+|+.+++.|+.|+|+|||.||+|+|++||+|||||
T Consensus 492 --------~~~~~~~~---~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~ 560 (755)
T TIGR01647 492 --------LKGDNRDD---LPSGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA 560 (755)
T ss_pred --------cCCcchhh---CCHHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec
Confidence 00000000 0011233344455799999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy78 517 EAE 519 (523)
Q Consensus 517 na~ 519 (523)
++.
T Consensus 561 ~gt 563 (755)
T TIGR01647 561 GAT 563 (755)
T ss_pred CCc
Confidence 753
No 13
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=1.7e-36 Score=342.85 Aligned_cols=186 Identities=30% Similarity=0.463 Sum_probs=145.4
Q ss_pred hHHHHHHHHHhhccCeEEEEEEecCCchhHHH--h--hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEE
Q psy78 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKH--L--NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVV 366 (523)
Q Consensus 291 ~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~--~--~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vv 366 (523)
+.+.+..++++++|+||+++|||.++.++... . ...+++.+|+|++|+|+++++|++|++++++|++|+++||+++
T Consensus 587 ~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~ 666 (1053)
T TIGR01523 587 ELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVH 666 (1053)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEECCchhccchhhhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEE
Confidence 45667788999999999999999986532110 0 0123457899999999999999999999999999999999999
Q ss_pred EEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEe
Q psy78 367 MITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT 446 (523)
Q Consensus 367 i~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 446 (523)
|+|||++.+|..+|+++|+..++... +.. ......+++
T Consensus 667 MiTGD~~~tA~~iA~~~Gi~~~~~~~---~~~---------------------------------------~~~~~~vit 704 (1053)
T TIGR01523 667 MLTGDFPETAKAIAQEVGIIPPNFIH---DRD---------------------------------------EIMDSMVMT 704 (1053)
T ss_pred EECCCCHHHHHHHHHHcCCCCccccc---ccc---------------------------------------ccccceeee
Confidence 99999999999999999996432100 000 000124567
Q ss_pred cccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 447 GKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 447 ~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
|++++.+.+ +.+........+++|++|+||..+|+.+++.++.|+|+|||.||+|||+.||+|||||....+
T Consensus 705 G~~l~~l~~---~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~ 776 (1053)
T TIGR01523 705 GSQFDALSD---EEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSD 776 (1053)
T ss_pred hHHhhhcCH---HHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccH
Confidence 776665432 233444555679999999999999999999999999999999999999999999999954333
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=315.87 Aligned_cols=226 Identities=29% Similarity=0.384 Sum_probs=178.9
Q ss_pred CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccC
Q psy78 184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVS 263 (523)
Q Consensus 184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~ 263 (523)
.++..++++++++||++|||||++++|+++..|+.+.+|+ ||++|+++.+|.+
T Consensus 350 ~~~~~a~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~---------------------------GILiK~g~~LE~l 402 (713)
T COG2217 350 GDWETALYRALAVLVIACPCALGLATPTAILVGIGRAARR---------------------------GILIKGGEALERL 402 (713)
T ss_pred CcHHHHHHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhC---------------------------ceEEeChHHHHhh
Confidence 6788899999999999999999999999999999999999 9999999999999
Q ss_pred CceeEEeecc-------cccccccccc--CCC------------Ccch--hHHHH-----------HHHHHhhccCeE--
Q psy78 264 GSINCVCFDK-------MFESTGWTLE--EPM------------KFVP--ENIVS-----------VLSEYTEQGYRV-- 307 (523)
Q Consensus 264 ~~v~~v~fDK-------~~~~~~~~~~--~~~------------~~~~--~~~~~-----------~~~~~~~~G~r~-- 307 (523)
+++++++||| .++.++.... +.. .+.| +.+.+ ..++..++|.+-
T Consensus 403 ~~v~tvvFDKTGTLT~G~p~v~~v~~~~~~e~~~L~laAalE~~S~HPiA~AIv~~a~~~~~~~~~~~~~i~G~Gv~~~v 482 (713)
T COG2217 403 AKVDTVVFDKTGTLTEGKPEVTDVVALDGDEDELLALAAALEQHSEHPLAKAIVKAAAERGLPDVEDFEEIPGRGVEAEV 482 (713)
T ss_pred ccCCEEEEeCCCCCcCCceEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCccceeeeccCcEEEEE
Confidence 9999999999 1222221111 000 0111 11111 134455666653
Q ss_pred ----EEEEEecCCch-h------HHHhhhcc-----hhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCC
Q psy78 308 ----IALASRTLSIE-D------YKHLNYMK-----REDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGD 371 (523)
Q Consensus 308 ----l~~a~k~l~~~-~------~~~~~~~~-----~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr 371 (523)
+.++.+.+-.+ . ........ ...+..|.+++|++.+.|++|++++++|++||+.|++++|+|||
T Consensus 483 ~g~~v~vG~~~~~~~~~~~~~~~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGD 562 (713)
T COG2217 483 DGERVLVGNARLLGEEGIDLPLLSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGD 562 (713)
T ss_pred CCEEEEEcCHHHHhhcCCCccchhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCC
Confidence 33333332111 0 00000011 13567889999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHH
Q psy78 372 NIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWE 451 (523)
Q Consensus 372 ~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 451 (523)
+..+|..+|+++||+
T Consensus 563 n~~~A~~iA~~lGId----------------------------------------------------------------- 577 (713)
T COG2217 563 NRRTAEAIAKELGID----------------------------------------------------------------- 577 (713)
T ss_pred CHHHHHHHHHHcChH-----------------------------------------------------------------
Confidence 999999999999996
Q ss_pred HHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEeccc
Q psy78 452 LIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518 (523)
Q Consensus 452 ~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna 518 (523)
.+++++.|++|.+.|+.|++.++.|+|+|||.||.|+|..||+|||||.+
T Consensus 578 -----------------~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~G 627 (713)
T COG2217 578 -----------------EVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSG 627 (713)
T ss_pred -----------------hheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCC
Confidence 47899999999999999999999999999999999999999999999984
No 15
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=8.6e-35 Score=311.78 Aligned_cols=221 Identities=24% Similarity=0.383 Sum_probs=163.9
Q ss_pred HHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeE
Q psy78 189 IVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINC 268 (523)
Q Consensus 189 ~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~ 268 (523)
++..+++++|++|||+||.++|+....|+.||+|+ |+++|+++++|.+|++++
T Consensus 248 ~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~---------------------------gvLvk~~~avE~lg~v~~ 300 (679)
T PRK01122 248 SITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQA---------------------------NVIATSGRAVEAAGDVDT 300 (679)
T ss_pred HHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcC---------------------------CeeecCchHHHHhcCCCE
Confidence 78889999999999999999999999999999999 999999999999999999
Q ss_pred Eeeccc--cc-----ccccc-ccCCC--------------Ccchh--HHHHHHHH------------------Hhh-ccC
Q psy78 269 VCFDKM--FE-----STGWT-LEEPM--------------KFVPE--NIVSVLSE------------------YTE-QGY 305 (523)
Q Consensus 269 v~fDK~--~~-----~~~~~-~~~~~--------------~~~~~--~~~~~~~~------------------~~~-~G~ 305 (523)
+||||. .+ .++.. .+..+ ...|. .+.+..++ +.+ .|+
T Consensus 301 I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~~~~~~~~~~~~pF~s~~~~ 380 (679)
T PRK01122 301 LLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRERDLQSLHATFVPFSAQTRM 380 (679)
T ss_pred EEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCchhhccccceeEeecCcCce
Confidence 999991 11 01100 00000 01111 11000000 000 111
Q ss_pred -------eEEEEEEecC-----Cc---h-hHHHh---hhc-----chhhhhccceeeeeeeeccCCCcchHHHHHHHHhC
Q psy78 306 -------RVIALASRTL-----SI---E-DYKHL---NYM-----KREDIEKDLEFLGLIILENRLKPQTEGVIKELKDA 361 (523)
Q Consensus 306 -------r~l~~a~k~l-----~~---~-~~~~~---~~~-----~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~ 361 (523)
+.+..|..+. .. + +.+.. ... ....+..|++++|+++++|++||++++++++||++
T Consensus 381 ~gv~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~ 460 (679)
T PRK01122 381 SGVDLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKM 460 (679)
T ss_pred EEEEECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHC
Confidence 1122222110 00 0 00000 000 11134458899999999999999999999999999
Q ss_pred CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCce
Q psy78 362 RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAY 441 (523)
Q Consensus 362 Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (523)
|++++|+|||++.+|..+|+++|++
T Consensus 461 GI~vvMiTGDn~~TA~aIA~elGId------------------------------------------------------- 485 (679)
T PRK01122 461 GIKTVMITGDNPLTAAAIAAEAGVD------------------------------------------------------- 485 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHcCCc-------------------------------------------------------
Confidence 9999999999999999999999996
Q ss_pred EEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEeccc
Q psy78 442 KFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518 (523)
Q Consensus 442 ~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna 518 (523)
.++++++|++|..+|+.+|+.|+.|+|+|||.||.|+|++||+|||||++
T Consensus 486 ---------------------------~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGIAMgsG 535 (679)
T PRK01122 486 ---------------------------DFLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSG 535 (679)
T ss_pred ---------------------------EEEccCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhCCEeEEeCCC
Confidence 47899999999999999999999999999999999999999999999965
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=8.8e-35 Score=326.81 Aligned_cols=271 Identities=27% Similarity=0.419 Sum_probs=199.2
Q ss_pred ecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehh
Q psy78 181 LRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKL 241 (523)
Q Consensus 181 ~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~ 241 (523)
+.+.++.+++..++++++++||||||+++|++++.|+.||+|+|++ |+++ +|+|+|+|.++
T Consensus 266 ~~~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i 345 (884)
T TIGR01522 266 FQGKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKI 345 (884)
T ss_pred HhcCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEE
Confidence 4567788999999999999999999999999999999999999973 4544 89999999999
Q ss_pred hhhhhccc---------------------------------cceeeecCC---------------cc-c-----------
Q psy78 242 YALTRLKK---------------------------------YNISCINSR---------------VI-N----------- 261 (523)
Q Consensus 242 ~~~~~~~~---------------------------------~~il~~~~~---------------~~-~----------- 261 (523)
|..+.... ...+|.+.. ++ +
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~ 425 (884)
T TIGR01522 346 WTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLCNNAKFRNEADTLLGNPTDVALIELLMKFGLDDLR 425 (884)
T ss_pred EecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHHhhhCCCeecCCCCCcCCChHHHHHHHHHHHcCcHhHH
Confidence 98754210 011122110 00 0
Q ss_pred -cCCceeEEeeccccc--cccccc-----------cCC--------------C------CcchhHHHHHHHHHhhccCeE
Q psy78 262 -VSGSINCVCFDKMFE--STGWTL-----------EEP--------------M------KFVPENIVSVLSEYTEQGYRV 307 (523)
Q Consensus 262 -~~~~v~~v~fDK~~~--~~~~~~-----------~~~--------------~------~~~~~~~~~~~~~~~~~G~r~ 307 (523)
....++.+.||...+ .+.... ..+ . .+.++.+.+..++++++|+|+
T Consensus 426 ~~~~~~~~~pF~s~~k~m~v~~~~~~~~~~~~~~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rv 505 (884)
T TIGR01522 426 ETYIRVAEVPFSSERKWMAVKCVHRQDRSEMCFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRV 505 (884)
T ss_pred hhCcEEeEeCCCCCCCeEEEEEEEcCCCeEEEEEeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEE
Confidence 011233444442000 000000 000 0 011245667778899999999
Q ss_pred EEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 308 IALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 308 l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
+++|++.+ +.|++++|+++++|++||+++++|++|+++|++++|+|||+..+|..+|+++|++.
T Consensus 506 l~~A~~~~----------------~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~ 569 (884)
T TIGR01522 506 IAFASGPE----------------KGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPS 569 (884)
T ss_pred EEEEEEcC----------------CCCeEEEEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 99999875 25799999999999999999999999999999999999999999999999999975
Q ss_pred CCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcc
Q psy78 388 PGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVK 467 (523)
Q Consensus 388 ~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~ 467 (523)
....+ ++|++++.+. .+.+.....+
T Consensus 570 ~~~~~----------------------------------------------------v~g~~l~~~~---~~~l~~~~~~ 594 (884)
T TIGR01522 570 KTSQS----------------------------------------------------VSGEKLDAMD---DQQLSQIVPK 594 (884)
T ss_pred CCCce----------------------------------------------------eEhHHhHhCC---HHHHHHHhhc
Confidence 33222 1222222111 1223344455
Q ss_pred cEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 468 GAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 468 ~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
..+++|++|++|..+++.+++.++.|+|+|||.||++||+.||+|||||+...++
T Consensus 595 ~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~g~~g~~v 649 (884)
T TIGR01522 595 VAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDV 649 (884)
T ss_pred CeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEecCCCcCHH
Confidence 6899999999999999999999999999999999999999999999999654443
No 17
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=8.1e-34 Score=319.77 Aligned_cols=178 Identities=31% Similarity=0.496 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhh-ccCeEEEEEEecCCchhHHH--hhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEE
Q psy78 291 ENIVSVLSEYTE-QGYRVIALASRTLSIEDYKH--LNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM 367 (523)
Q Consensus 291 ~~~~~~~~~~~~-~G~r~l~~a~k~l~~~~~~~--~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi 367 (523)
+++.+.++++++ +|+||+++|||.++.+.... .....++.+|+|++|+|+++++|++|++++++|++||++|++++|
T Consensus 479 ~~i~~~~~~~a~~~GlRvl~~A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~m 558 (917)
T TIGR01116 479 NTILSVIKEMGTTKALRCLALAFKDIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIM 558 (917)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEEECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEE
Confidence 456677889999 99999999999986432110 011233567999999999999999999999999999999999999
Q ss_pred EcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEec
Q psy78 368 ITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTG 447 (523)
Q Consensus 368 ~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 447 (523)
+|||+..+|..+|+++|+..++..+.. ..++|
T Consensus 559 iTGD~~~tA~~ia~~~gi~~~~~~v~~------------------------------------------------~~~~g 590 (917)
T TIGR01116 559 ITGDNKETAEAICRRIGIFSPDEDVTF------------------------------------------------KSFTG 590 (917)
T ss_pred ecCCCHHHHHHHHHHcCCCCCCccccc------------------------------------------------eeeeH
Confidence 999999999999999999753322100 01222
Q ss_pred ccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78 448 KSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE 519 (523)
Q Consensus 448 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~ 519 (523)
++++.+. ++.......+..+++|++|+||..+++.+++.++.|+|+|||.||++||++||+|||||++.
T Consensus 591 ~~l~~~~---~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~ 659 (917)
T TIGR01116 591 REFDEMG---PAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGT 659 (917)
T ss_pred HHHhhCC---HHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCc
Confidence 2222211 11222334455799999999999999999999999999999999999999999999999774
No 18
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=4.9e-34 Score=305.72 Aligned_cols=224 Identities=25% Similarity=0.357 Sum_probs=164.0
Q ss_pred HHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCce
Q psy78 187 WDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSI 266 (523)
Q Consensus 187 ~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v 266 (523)
...+..+++++|++|||+||+++|++++.|+.||+|+ |+++|+++++|.+|++
T Consensus 246 ~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~---------------------------gvLvk~~~avE~lg~v 298 (673)
T PRK14010 246 NLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQF---------------------------NILAKSGRSVETCGDV 298 (673)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhC---------------------------CEEEeCcHHHHHhhCC
Confidence 3456777788888999999999999999999999999 9999999999999999
Q ss_pred eEEeeccc--ccc-----cccc-ccCCC--------------CcchhH--HHHHHH--------------HHh----hcc
Q psy78 267 NCVCFDKM--FES-----TGWT-LEEPM--------------KFVPEN--IVSVLS--------------EYT----EQG 304 (523)
Q Consensus 267 ~~v~fDK~--~~~-----~~~~-~~~~~--------------~~~~~~--~~~~~~--------------~~~----~~G 304 (523)
+++||||. .+. ..+. ....+ ...|.. +.+..+ .+. ..|
T Consensus 299 ~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~~~~~~~~pF~~~~k~~g 378 (673)
T PRK14010 299 NVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLPQEVGEYIPFTAETRMSG 378 (673)
T ss_pred CEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCchhhhcceeccccccceeE
Confidence 99999991 110 0010 00000 011110 000000 011 111
Q ss_pred C----eEEEEEEecCC------------chhHH---H-hhhcch-hhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC
Q psy78 305 Y----RVIALASRTLS------------IEDYK---H-LNYMKR-EDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV 363 (523)
Q Consensus 305 ~----r~l~~a~k~l~------------~~~~~---~-~~~~~~-~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi 363 (523)
. +.+..|..+.- .+... . .....+ ..+..|++++|+++++|++||+++++|++||++|+
T Consensus 379 v~~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI 458 (673)
T PRK14010 379 VKFTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEILGVIYLKDVIKDGLVERFRELREMGI 458 (673)
T ss_pred EEECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEEEEEEEeecCCcHHHHHHHHHHHHCCC
Confidence 1 11112211110 00000 0 000001 12345899999999999999999999999999999
Q ss_pred cEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEE
Q psy78 364 KVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKF 443 (523)
Q Consensus 364 ~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 443 (523)
+++|+|||++.+|..+|+++|++
T Consensus 459 ~vvMiTGDn~~TA~aIA~elGI~--------------------------------------------------------- 481 (673)
T PRK14010 459 ETVMCTGDNELTAATIAKEAGVD--------------------------------------------------------- 481 (673)
T ss_pred eEEEECCCCHHHHHHHHHHcCCc---------------------------------------------------------
Confidence 99999999999999999999996
Q ss_pred EEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78 444 AVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE 519 (523)
Q Consensus 444 ~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~ 519 (523)
.++++++|++|.++|+.+|+.|+.|+|+|||.||+|+|++||+|||||++.
T Consensus 482 -------------------------~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGIAMgsGT 532 (673)
T PRK14010 482 -------------------------RFVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAMNSGT 532 (673)
T ss_pred -------------------------eEEcCCCHHHHHHHHHHHHhCCCEEEEECCChhhHHHHHhCCEEEEeCCCC
Confidence 478999999999999999999999999999999999999999999999653
No 19
>KOG0203|consensus
Probab=100.00 E-value=5.8e-36 Score=310.42 Aligned_cols=305 Identities=28% Similarity=0.330 Sum_probs=221.5
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc--------------cccc-----cceeeeeeehhh
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS--------------CINS-----RVINLMTVGKLY 242 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~--------------~~~~-----~t~~~m~v~~~~ 242 (523)
-|+++.+++.+.+.++|+.+|+|||..+|++++...+||+++||. .||| +|+|+|||+|+|
T Consensus 309 ~gy~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw 388 (1019)
T KOG0203|consen 309 LGYEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLW 388 (1019)
T ss_pred hcchhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeec
Confidence 489999999999999999999999999999999999999999983 2454 899999999999
Q ss_pred hhhhccccce--------eeecCCccccCCceeEEeecc-----------------------------------------
Q psy78 243 ALTRLKKYNI--------SCINSRVINVSGSINCVCFDK----------------------------------------- 273 (523)
Q Consensus 243 ~~~~~~~~~i--------l~~~~~~~~~~~~v~~v~fDK----------------------------------------- 273 (523)
.++.+.+... +++....+..+.++.++|.+-
T Consensus 389 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn~a~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~ 468 (1019)
T KOG0203|consen 389 FDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCNRAVFKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRE 468 (1019)
T ss_pred cCCceeeeechhhhhcccccccCchHHHHHHHHHHhCcceecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHH
Confidence 9888743332 333344455555666666554
Q ss_pred --------ccccccc-c-----ccCCC--------------------------------CcchhHHHHHHHHHhhccCeE
Q psy78 274 --------MFESTGW-T-----LEEPM--------------------------------KFVPENIVSVLSEYTEQGYRV 307 (523)
Q Consensus 274 --------~~~~~~~-~-----~~~~~--------------------------------~~~~~~~~~~~~~~~~~G~r~ 307 (523)
.|.+++. + .+++. ++..+.+++..+++.+.|.||
T Consensus 469 ~~~kv~eipfNSt~Kyqlsih~~~d~~~~~~~l~mKGape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerV 548 (1019)
T KOG0203|consen 469 RNPKVAEIPFNSTNKYQLSIHETEDPSDPRFLLVMKGAPERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERV 548 (1019)
T ss_pred hhHHhhcCCcccccceEEEEEecCCCCCccceeeecCChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHH
Confidence 1111110 0 01100 033467788888999999999
Q ss_pred EEEEEecCCchhHHHhhhc---chhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcC
Q psy78 308 IALASRTLSIEDYKHLNYM---KREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG 384 (523)
Q Consensus 308 l~~a~k~l~~~~~~~~~~~---~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lg 384 (523)
+++++++++++........ .....-.++.|+|++++-||+|..+.+|+.+||.+||+++|+|||++.+|.++|++.|
T Consensus 549 lgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vg 628 (1019)
T KOG0203|consen 549 LGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVG 628 (1019)
T ss_pred HHHHHHhcchhcCCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhhee
Confidence 9999999976532111111 2234557899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccH--------HHHHhh
Q psy78 385 IIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSW--------ELIRDQ 456 (523)
Q Consensus 385 i~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--------~~l~~~ 456 (523)
|...+....... . .+ ... ..+..........++.|.++ +++.+.
T Consensus 629 Ii~~~~et~e~~--a--------------------~r---~~~---~v~~vn~~~a~a~VihG~eL~~~~~~qld~il~n 680 (1019)
T KOG0203|consen 629 IISEGSETVEDI--A--------------------KR---LNI---PVEQVNSRDAKAAVIHGSELPDMSSEQLDELLQN 680 (1019)
T ss_pred eecCCchhhhhh--H--------------------Hh---cCC---cccccCccccceEEEecccccccCHHHHHHHHHh
Confidence 864332221100 0 00 000 00000001112334444443 333333
Q ss_pred CcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCCC
Q psy78 457 MPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID 523 (523)
Q Consensus 457 ~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~va 523 (523)
.++ -+|+|.+|+||..+++..|++|+.|...|||.||.|+||.||+|||||-|..+++
T Consensus 681 h~e---------IVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGSDvs 738 (1019)
T KOG0203|consen 681 HQE---------IVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVS 738 (1019)
T ss_pred CCc---------eEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccchHH
Confidence 332 4899999999999999999999999999999999999999999999999888764
No 20
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=3.5e-32 Score=291.09 Aligned_cols=222 Identities=23% Similarity=0.358 Sum_probs=160.3
Q ss_pred HHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeE
Q psy78 189 IVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINC 268 (523)
Q Consensus 189 ~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~ 268 (523)
++..+++++|++|||+|+...++....|+.||+|+ |+++|+++++|.+|++++
T Consensus 249 ~~~~lvallV~aiP~aLg~l~~av~iag~~r~ar~---------------------------gvLvK~~~avE~lg~v~~ 301 (675)
T TIGR01497 249 SVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLGF---------------------------NVIATSGRAVEACGDVDT 301 (675)
T ss_pred HHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHC---------------------------CeEeeCcHHHHHhhCCCE
Confidence 56778999999999999988888888999999999 999999999999999999
Q ss_pred Eeeccc-------ccccccc-ccCCC--------------Ccchh--HHHHHHHH-----------------Hhhc-cCe
Q psy78 269 VCFDKM-------FESTGWT-LEEPM--------------KFVPE--NIVSVLSE-----------------YTEQ-GYR 306 (523)
Q Consensus 269 v~fDK~-------~~~~~~~-~~~~~--------------~~~~~--~~~~~~~~-----------------~~~~-G~r 306 (523)
+||||. ++.+++. .+..+ .+.|+ .+.+...+ +.++ |+.
T Consensus 302 I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~~~~~~~~~~~~pf~~~~~~s 381 (675)
T TIGR01497 302 LLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIREDDVQSLHATFVEFTAQTRMS 381 (675)
T ss_pred EEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCccccccccceEEEEcCCCcEE
Confidence 999991 1111110 00000 01111 11000000 0011 111
Q ss_pred --------EEEEEEecC------------CchhHHHhhhc-----chhhhhccceeeeeeeeccCCCcchHHHHHHHHhC
Q psy78 307 --------VIALASRTL------------SIEDYKHLNYM-----KREDIEKDLEFLGLIILENRLKPQTEGVIKELKDA 361 (523)
Q Consensus 307 --------~l~~a~k~l------------~~~~~~~~~~~-----~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~ 361 (523)
.+..|..+. +.+..+..... ....+..|.+++|+++++|++||++++++++||++
T Consensus 382 g~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~ 461 (675)
T TIGR01497 382 GINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQGGTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKM 461 (675)
T ss_pred EEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHC
Confidence 111111100 00000000000 01133456799999999999999999999999999
Q ss_pred CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCce
Q psy78 362 RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAY 441 (523)
Q Consensus 362 Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (523)
|++++|+|||+..++..+|+++|++
T Consensus 462 Gi~v~miTGD~~~ta~~iA~~lGI~------------------------------------------------------- 486 (675)
T TIGR01497 462 GIKTIMITGDNRLTAAAIAAEAGVD------------------------------------------------------- 486 (675)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCC-------------------------------------------------------
Confidence 9999999999999999999999995
Q ss_pred EEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78 442 KFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE 519 (523)
Q Consensus 442 ~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~ 519 (523)
.++++++|++|...++.+++.++.|+|+|||.||+|||++||+||||+++.
T Consensus 487 ---------------------------~v~a~~~PedK~~~v~~lq~~g~~VamvGDG~NDapAL~~AdvGiAm~~gt 537 (675)
T TIGR01497 487 ---------------------------DFIAEATPEDKIALIRQEQAEGKLVAMTGDGTNDAPALAQADVGVAMNSGT 537 (675)
T ss_pred ---------------------------EEEcCCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhCCEeEEeCCCC
Confidence 478899999999999999999999999999999999999999999999764
No 21
>KOG0207|consensus
Probab=99.98 E-value=5e-33 Score=292.79 Aligned_cols=230 Identities=24% Similarity=0.314 Sum_probs=179.4
Q ss_pred CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccC
Q psy78 184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVS 263 (523)
Q Consensus 184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~ 263 (523)
..+..+|..+++++++||||||++|+|+++..|....|++ |+|+|+++.+|.+
T Consensus 527 ~~~~~a~~~aisVlviACPCaLgLATPtAvmvatgvgA~n---------------------------GvLIKGge~LE~~ 579 (951)
T KOG0207|consen 527 DAFSHAFQLAISVLVIACPCALGLATPTAVMVATGVGATN---------------------------GVLIKGGEALEKA 579 (951)
T ss_pred HHHHHHHHhhheEEEEECchhhhcCCceEEEEEechhhhc---------------------------ceEEcCcHHHHHH
Confidence 5678899999999999999999999999999999999999 9999999999999
Q ss_pred CceeEEeeccc-------cccc------c-cccc----------CCC-----C-----------cchhHHHHHHHHHhhc
Q psy78 264 GSINCVCFDKM-------FEST------G-WTLE----------EPM-----K-----------FVPENIVSVLSEYTEQ 303 (523)
Q Consensus 264 ~~v~~v~fDK~-------~~~~------~-~~~~----------~~~-----~-----------~~~~~~~~~~~~~~~~ 303 (523)
.++++++|||. +..+ + +... ..+ + ..+.......+.+.++
T Consensus 580 hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHPig~AIv~yak~~~~~~~~~~~~~~~~~pg~ 659 (951)
T KOG0207|consen 580 HKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHPIGKAIVDYAKEKLVEPNPEGVLSFEYFPGE 659 (951)
T ss_pred hcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCchHHHHHHHHHhcccccCccccceeecccCC
Confidence 99999999991 1111 1 1100 000 0 0111122233455666
Q ss_pred cC--eEE------EEEEecCCch-----hHHHhh--------hcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCC
Q psy78 304 GY--RVI------ALASRTLSIE-----DYKHLN--------YMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDAR 362 (523)
Q Consensus 304 G~--r~l------~~a~k~l~~~-----~~~~~~--------~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~G 362 (523)
|. .+. .+|.+++-.. ...... ..+-..+..|.++.|++.++|++|+++..+++.||+.|
T Consensus 660 g~~~~~~~~~~~i~iGN~~~~~r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~G 739 (951)
T KOG0207|consen 660 GIYVTVTVDGNEVLIGNKEWMSRNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMG 739 (951)
T ss_pred CcccceEEeeeEEeechHHHHHhcCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcC
Confidence 72 232 3333333111 000000 01112456788999999999999999999999999999
Q ss_pred CcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceE
Q psy78 363 VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYK 442 (523)
Q Consensus 363 i~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (523)
++++|+|||+..+|+++|+++|++
T Consensus 740 i~v~mLTGDn~~aA~svA~~VGi~-------------------------------------------------------- 763 (951)
T KOG0207|consen 740 IKVVMLTGDNDAAARSVAQQVGID-------------------------------------------------------- 763 (951)
T ss_pred ceEEEEcCCCHHHHHHHHHhhCcc--------------------------------------------------------
Confidence 999999999999999999999985
Q ss_pred EEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 443 FAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 443 l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
.++++..|++|.+.|+.+++.+..|+|+|||.||.|+|.+||+|||||.+ .++
T Consensus 764 --------------------------~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIaig~g-s~v 816 (951)
T KOG0207|consen 764 --------------------------NVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAG-SDV 816 (951)
T ss_pred --------------------------eEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHhhccceeeccc-cHH
Confidence 58999999999999999999999999999999999999999999999988 555
Q ss_pred C
Q psy78 523 D 523 (523)
Q Consensus 523 a 523 (523)
|
T Consensus 817 A 817 (951)
T KOG0207|consen 817 A 817 (951)
T ss_pred H
Confidence 4
No 22
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.98 E-value=1.7e-31 Score=305.56 Aligned_cols=219 Identities=27% Similarity=0.400 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhh--------h-cc--------hhhhhccceeeeeeeeccCCCcchH
Q psy78 290 PENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLN--------Y-MK--------REDIEKDLEFLGLIILENRLKPQTE 352 (523)
Q Consensus 290 ~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~--------~-~~--------~~~~e~dl~~lG~i~~~d~lr~~t~ 352 (523)
++.+.+.+++++++|+|++++|+|++++++.+.+. . .+ .+.+|+|++++|+++++|++|++++
T Consensus 558 ~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~ 637 (1057)
T TIGR01652 558 NEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVP 637 (1057)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccH
Confidence 35567788999999999999999999865322110 0 01 2468999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78 353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE 432 (523)
Q Consensus 353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (523)
++|++|+++||++||+|||+..+|.++|+++|+.+++...+..++...++.... ...+........ ...
T Consensus 638 etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~--------~~~i~~~~~~~~---~~~ 706 (1057)
T TIGR01652 638 ETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSV--------EAAIKFGLEGTS---EEF 706 (1057)
T ss_pred HHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHH--------HHHHHHHHHHHH---Hhh
Confidence 999999999999999999999999999999999887766666655321110000 000000000000 000
Q ss_pred hhccCCCceEEEEecccHHHHHhhC-cchHhhhhc--ccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhHHHHHh
Q psy78 433 ELGLSSGAYKFAVTGKSWELIRDQM-PELIPRIIV--KGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDCGALRA 508 (523)
Q Consensus 433 ~~~~~~~~~~l~i~~~~~~~l~~~~-~~~~~~~~~--~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~~MLk~ 508 (523)
..........++++|+.++.+.+.. ...+..+.. +..++||++|+||+.+|+.+++. ++.|+|+|||.||++||++
T Consensus 707 ~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~ 786 (1057)
T TIGR01652 707 NNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQE 786 (1057)
T ss_pred hhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhh
Confidence 0111234567899999988765432 233444433 44599999999999999999998 9999999999999999999
Q ss_pred CCccEEecccC
Q psy78 509 AHAGISLSEAE 519 (523)
Q Consensus 509 A~vGIAMgna~ 519 (523)
||+||++.+.+
T Consensus 787 AdVGIgi~g~e 797 (1057)
T TIGR01652 787 ADVGVGISGKE 797 (1057)
T ss_pred cCeeeEecChH
Confidence 99999986655
No 23
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.97 E-value=2.2e-30 Score=285.33 Aligned_cols=226 Identities=24% Similarity=0.292 Sum_probs=168.4
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccc
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVIN 261 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~ 261 (523)
.+.++..++.+++++++++|||||++++|+++..++.+++|+ ||++|+++++|
T Consensus 379 ~~~~~~~~i~~a~svlviacPcaL~latP~a~~~~l~~aar~---------------------------gilik~~~alE 431 (741)
T PRK11033 379 FAAPWQEWIYRGLTLLLIGCPCALVISTPAAITSGLAAAARR---------------------------GALIKGGAALE 431 (741)
T ss_pred ccCCHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHC---------------------------CeEEcCcHHHH
Confidence 466788899999999999999999999999999999999999 99999999999
Q ss_pred cCCceeEEeeccc--c-----ccccccc-cCCC--------------CcchhHHHHHHHH-----------------Hhh
Q psy78 262 VSGSINCVCFDKM--F-----ESTGWTL-EEPM--------------KFVPENIVSVLSE-----------------YTE 302 (523)
Q Consensus 262 ~~~~v~~v~fDK~--~-----~~~~~~~-~~~~--------------~~~~~~~~~~~~~-----------------~~~ 302 (523)
.+++++++||||. + +.++... +... ...| +.+.+-. ..+
T Consensus 432 ~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~aa~~e~~s~hP--ia~Ai~~~a~~~~~~~~~~~~~~~~~g 509 (741)
T PRK11033 432 QLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESELLALAAAVEQGSTHP--LAQAIVREAQVRGLAIPEAESQRALAG 509 (741)
T ss_pred HhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhcCCCCCCCcceEEEee
Confidence 9999999999991 1 1111100 0000 0111 1111111 112
Q ss_pred ccCeE------EEEEEecCCch----hHHH---h--hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEE
Q psy78 303 QGYRV------IALASRTLSIE----DYKH---L--NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM 367 (523)
Q Consensus 303 ~G~r~------l~~a~k~l~~~----~~~~---~--~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi 367 (523)
.|++. +.++..++-.+ .... . .......+..|.+++|++.++|++|++++++|++|+++|++++|
T Consensus 510 ~Gv~~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~l 589 (741)
T PRK11033 510 SGIEGQVNGERVLICAPGKLPPLADAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVM 589 (741)
T ss_pred EEEEEEECCEEEEEecchhhhhccHHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEE
Confidence 23321 12222222110 0000 0 00011245568899999999999999999999999999999999
Q ss_pred EcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEec
Q psy78 368 ITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTG 447 (523)
Q Consensus 368 ~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 447 (523)
+|||+..++..+++++|++
T Consensus 590 lTGd~~~~a~~ia~~lgi~------------------------------------------------------------- 608 (741)
T PRK11033 590 LTGDNPRAAAAIAGELGID------------------------------------------------------------- 608 (741)
T ss_pred EcCCCHHHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999999994
Q ss_pred ccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78 448 KSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAES 520 (523)
Q Consensus 448 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~ 520 (523)
.+++..|++|..+++.+++. +.|+|+|||.||.+||+.||+|||||++.+
T Consensus 609 ----------------------~~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~ 658 (741)
T PRK11033 609 ----------------------FRAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTD 658 (741)
T ss_pred ----------------------eecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCH
Confidence 34567899999999999865 589999999999999999999999998643
No 24
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.96 E-value=2.4e-28 Score=274.19 Aligned_cols=226 Identities=23% Similarity=0.316 Sum_probs=170.6
Q ss_pred hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCc
Q psy78 186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGS 265 (523)
Q Consensus 186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~ 265 (523)
+..++.+++++++++|||||++++|++++.|+.+++|+ ||++|+++.+|.+++
T Consensus 464 ~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~---------------------------gilvk~~~~le~l~~ 516 (834)
T PRK10671 464 IVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEF---------------------------GVLVRDADALQRAST 516 (834)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHC---------------------------CeEEecHHHHHhhcC
Confidence 45678899999999999999999999999999999999 999999999999999
Q ss_pred eeEEeeccc--c-----ccccccc-cCCC--------------Ccch--hHHHHHH-----------HHHhhccCeE---
Q psy78 266 INCVCFDKM--F-----ESTGWTL-EEPM--------------KFVP--ENIVSVL-----------SEYTEQGYRV--- 307 (523)
Q Consensus 266 v~~v~fDK~--~-----~~~~~~~-~~~~--------------~~~~--~~~~~~~-----------~~~~~~G~r~--- 307 (523)
++++||||. + +.++... +... ...| ..+.+.. ++..+.|.+.
T Consensus 517 v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~~~~~~~~~~~~~g~Gv~~~~~ 596 (834)
T PRK10671 517 LDTLVFDKTGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDMTLPQVNGFRTLRGLGVSGEAE 596 (834)
T ss_pred CCEEEEcCCCccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCcccceEecceEEEEEEC
Confidence 999999991 1 1111100 0000 1111 1111110 1112244432
Q ss_pred ---EEEEEecCCch----hH------HHh--hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCC
Q psy78 308 ---IALASRTLSIE----DY------KHL--NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDN 372 (523)
Q Consensus 308 ---l~~a~k~l~~~----~~------~~~--~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~ 372 (523)
+.++.+++-.+ .. +.. .......+..|..++|.+.+.|+++|+++++|++|++.|++++|+|||+
T Consensus 597 g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~ 676 (834)
T PRK10671 597 GHALLLGNQALLNEQQVDTKALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDN 676 (834)
T ss_pred CEEEEEeCHHHHHHcCCChHHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCC
Confidence 22233332100 00 000 0001124567889999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHH
Q psy78 373 IQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWEL 452 (523)
Q Consensus 373 ~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 452 (523)
..++..+++++|++
T Consensus 677 ~~~a~~ia~~lgi~------------------------------------------------------------------ 690 (834)
T PRK10671 677 PTTANAIAKEAGID------------------------------------------------------------------ 690 (834)
T ss_pred HHHHHHHHHHcCCC------------------------------------------------------------------
Confidence 99999999999995
Q ss_pred HHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78 453 IRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAES 520 (523)
Q Consensus 453 l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~ 520 (523)
.++++..|++|..+++.+++++++++|+|||.||++|++.||+||||||+.+
T Consensus 691 ----------------~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g~~ 742 (834)
T PRK10671 691 ----------------EVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSD 742 (834)
T ss_pred ----------------EEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCCCH
Confidence 3677888999999999999999999999999999999999999999999754
No 25
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.96 E-value=7e-28 Score=256.53 Aligned_cols=199 Identities=35% Similarity=0.563 Sum_probs=159.6
Q ss_pred chHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCC
Q psy78 185 SLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSG 264 (523)
Q Consensus 185 ~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~ 264 (523)
++.+++.+++++++++||||||+++|+++..+..+|+|+ ||++|+++.+|.++
T Consensus 176 ~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~---------------------------gilvk~~~~lE~l~ 228 (499)
T TIGR01494 176 SIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKK---------------------------GIVVRSLNALEELG 228 (499)
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHC---------------------------CcEEechhhhhhcc
Confidence 346889999999999999999999999999999999999 99999999999999
Q ss_pred ceeEEeeccc--ccccccc-----ccC--CCCcch--hHH----------------------------------------
Q psy78 265 SINCVCFDKM--FESTGWT-----LEE--PMKFVP--ENI---------------------------------------- 293 (523)
Q Consensus 265 ~v~~v~fDK~--~~~~~~~-----~~~--~~~~~~--~~~---------------------------------------- 293 (523)
+++++||||. ++..... ..+ .....| ..+
T Consensus 229 ~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~G~~~~i 308 (499)
T TIGR01494 229 KVDYICSDKTGTLTKNEMSFKKVSVLGGEYLSGHPDERALVKSAKWKILNVFEFSSVRKRMSVIVRGPDGTYVKGAPEFV 308 (499)
T ss_pred CCcEEEeeCCCccccCceEEEEEEecCCCcCCCChHHHHHHHHhhhcCcceeccCCCCceEEEEEecCCcEEEeCCHHHH
Confidence 9999999991 1111100 000 000011 000
Q ss_pred -------HHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEE
Q psy78 294 -------VSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVV 366 (523)
Q Consensus 294 -------~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vv 366 (523)
.+..+.+..+|+|+++ +..+.+++|++.++|++|++++++|+.|+++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~---------------------~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~ 367 (499)
T TIGR01494 309 LSRVKDLEEKVKELAQSGLRVLA---------------------VASKETLLGLLGLEDPLRDDAKETISELREAGIRVI 367 (499)
T ss_pred HHhhHHHHHHHHHHHhCCCEEEE---------------------EEECCeEEEEEEecCCCchhHHHHHHHHHHCCCeEE
Confidence 0111112223333332 234458999999999999999999999999999999
Q ss_pred EEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEe
Q psy78 367 MITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT 446 (523)
Q Consensus 367 i~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 446 (523)
|+|||+..++..+|+++|+
T Consensus 368 ~ltGD~~~~a~~ia~~lgi------------------------------------------------------------- 386 (499)
T TIGR01494 368 MLTGDNVLTAKAIAKELGI------------------------------------------------------------- 386 (499)
T ss_pred EEcCCCHHHHHHHHHHcCc-------------------------------------------------------------
Confidence 9999999999999999986
Q ss_pred cccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec
Q psy78 447 GKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS 516 (523)
Q Consensus 447 ~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg 516 (523)
+++.+|++|...++.+++.++.|+|+|||.||++||+.||+|||||
T Consensus 387 ------------------------~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Advgia~~ 432 (499)
T TIGR01494 387 ------------------------FARVTPEEKAALVEALQKKGRVVAMTGDGVNDAPALKKADVGIAMG 432 (499)
T ss_pred ------------------------eeccCHHHHHHHHHHHHHCCCEEEEECCChhhHHHHHhCCCccccc
Confidence 2567899999999999999999999999999999999999999997
No 26
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.95 E-value=7.4e-28 Score=258.28 Aligned_cols=224 Identities=29% Similarity=0.334 Sum_probs=167.0
Q ss_pred hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCc
Q psy78 186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGS 265 (523)
Q Consensus 186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~ 265 (523)
|..++.+++++++++|||||++++|+++..++.+++|+ ||++|+++++|.+++
T Consensus 224 ~~~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~---------------------------gIlik~~~~lE~l~~ 276 (562)
T TIGR01511 224 WLFALEFAVTVLIIACPCALGLATPTVIAVATGLAAKN---------------------------GVLIKDGDALERAAN 276 (562)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHC---------------------------CeEEcChHHHHHhhC
Confidence 34689999999999999999999999999999999999 999999999999999
Q ss_pred eeEEeeccc--cccccccc------cCCC--------------Ccch--hHHHHHH-------------HHHhhccCeE-
Q psy78 266 INCVCFDKM--FESTGWTL------EEPM--------------KFVP--ENIVSVL-------------SEYTEQGYRV- 307 (523)
Q Consensus 266 v~~v~fDK~--~~~~~~~~------~~~~--------------~~~~--~~~~~~~-------------~~~~~~G~r~- 307 (523)
++++||||. ++.....+ .... ...| ..+.+.. ++..++|.+.
T Consensus 277 v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~~~~~~~~~~~~~g~Gi~~~ 356 (562)
T TIGR01511 277 IDTVVFDKTGTLTQGKPTVTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGITLVEVSDFKAIPGIGVEGT 356 (562)
T ss_pred CCEEEECCCCCCcCCCEEEEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCcCCCCCeEEECCceEEEE
Confidence 999999991 11111000 0000 0111 1111111 1112333322
Q ss_pred -----EEEEEecCCchh----HH-HhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78 308 -----IALASRTLSIED----YK-HLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAI 377 (523)
Q Consensus 308 -----l~~a~k~l~~~~----~~-~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~ 377 (523)
+.++.+.+-.+. .+ .........+..|.+++|.+.++|+++|+++++|++|+++|++++|+|||+...+.
T Consensus 357 ~~g~~~~iG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~ 436 (562)
T TIGR01511 357 VEGTKIQLGNEKLLGENAIKIDGKAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAK 436 (562)
T ss_pred ECCEEEEEECHHHHHhCCCCCChhhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHH
Confidence 122222211000 00 00001112466789999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhC
Q psy78 378 SVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQM 457 (523)
Q Consensus 378 ~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~ 457 (523)
.+++++|++
T Consensus 437 ~ia~~lgi~----------------------------------------------------------------------- 445 (562)
T TIGR01511 437 AVAKELGIN----------------------------------------------------------------------- 445 (562)
T ss_pred HHHHHcCCc-----------------------------------------------------------------------
Confidence 999999983
Q ss_pred cchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78 458 PELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE 519 (523)
Q Consensus 458 ~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~ 519 (523)
++++..|++|...++.+++.+++++|+|||.||++|++.||+||+||++.
T Consensus 446 ------------~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~ 495 (562)
T TIGR01511 446 ------------VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGT 495 (562)
T ss_pred ------------EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcC
Confidence 34566789999999999999999999999999999999999999999764
No 27
>KOG0210|consensus
Probab=99.95 E-value=4.2e-28 Score=246.52 Aligned_cols=208 Identities=26% Similarity=0.411 Sum_probs=168.1
Q ss_pred hhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhc---------ch---------hhhhccceeeeeeeeccCCCcch
Q psy78 290 PENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYM---------KR---------EDIEKDLEFLGLIILENRLKPQT 351 (523)
Q Consensus 290 ~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~---------~~---------~~~e~dl~~lG~i~~~d~lr~~t 351 (523)
.+++++..++|+++|+|++++|+|.+++++++..... +| ..+|.|++++|+.++||++++++
T Consensus 584 NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dV 663 (1051)
T KOG0210|consen 584 NDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVEDKLQDDV 663 (1051)
T ss_pred chhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHHHHhhhh
Confidence 3567788899999999999999999987644322100 12 26899999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchh
Q psy78 352 EGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTE 431 (523)
Q Consensus 352 ~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (523)
+.+++.||++||++||+|||..++|..+|+..++...++++-.++..... .+.. ..
T Consensus 664 k~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr--------------~dah----------~e 719 (1051)
T KOG0210|consen 664 KPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSR--------------GDAH----------NE 719 (1051)
T ss_pred HhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCc--------------hHHH----------HH
Confidence 99999999999999999999999999999999998877776655543211 0000 01
Q ss_pred hhhccCCCceEEEEecccHHHHHhhCcchHhhhhc--ccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhHHHHHh
Q psy78 432 EELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIV--KGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDCGALRA 508 (523)
Q Consensus 432 ~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~--~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~~MLk~ 508 (523)
.+.........++++|+.++...+.++.++.++.+ ...++||++|.||+++++.++++ +..|+|+|||.||++|++.
T Consensus 720 L~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~ 799 (1051)
T KOG0210|consen 720 LNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQA 799 (1051)
T ss_pred HHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheee
Confidence 11123456678999999999888888888887665 45789999999999999999998 8899999999999999999
Q ss_pred CCccEEecccCCC
Q psy78 509 AHAGISLSEAESP 521 (523)
Q Consensus 509 A~vGIAMgna~~~ 521 (523)
||+||.+-..++.
T Consensus 800 A~~GiGI~gkEGk 812 (1051)
T KOG0210|consen 800 ADVGIGIVGKEGK 812 (1051)
T ss_pred cccceeeeccccc
Confidence 9999998765543
No 28
>KOG0206|consensus
Probab=99.95 E-value=1.3e-27 Score=263.58 Aligned_cols=322 Identities=22% Similarity=0.273 Sum_probs=216.1
Q ss_pred hHHHHHHHHhheeeccCCCChhH------HHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhh------------c
Q psy78 186 LWDIVIKSLDIITIVIPPALPAT------MTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTR------------L 247 (523)
Q Consensus 186 ~~~~~~~~~~vlv~~~P~aLp~~------~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~------------~ 247 (523)
-..-+..++++.=.++|+.=+-. ..-.--.|+.+.+|+-=....+.|.+.+||.+....++ .
T Consensus 462 ~~~~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLeF~S~R 541 (1151)
T KOG0206|consen 462 DILEFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLEFNSTR 541 (1151)
T ss_pred hHHHHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEecccccc
Confidence 34457778888777777762111 00001112222233311223456778888775552111 2
Q ss_pred cccceeeecCCc--cccCCceeEEeeccccccccccccCCCCcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhh
Q psy78 248 KKYNISCINSRV--INVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNY 325 (523)
Q Consensus 248 ~~~~il~~~~~~--~~~~~~v~~v~fDK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~ 325 (523)
++|.+++|++.- +--+.++|.+.|+. +....+...+...+++++++.+|+|++++|||++++++++.+..
T Consensus 542 KRMSVIVR~p~g~i~LycKGADsvI~er--------L~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~ 613 (1151)
T KOG0206|consen 542 KRMSVIVRDPDGRILLYCKGADSVIFER--------LSKNGEKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNE 613 (1151)
T ss_pred ceeEEEEEcCCCcEEEEEcCcchhhHhh--------hhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHH
Confidence 567778887663 33344555555554 22233455677788999999999999999999999876544431
Q ss_pred c---------ch--------hhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCC
Q psy78 326 M---------KR--------EDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 388 (523)
Q Consensus 326 ~---------~~--------~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~ 388 (523)
. +| +.+|+||.++|.+++||++++++.++|+.|+++|||+|++|||..+||.+++..|++..+
T Consensus 614 ~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~ 693 (1151)
T KOG0206|consen 614 RYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQ 693 (1151)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCC
Confidence 1 22 378999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCC-CceEEEEecccHHHHHhhCc-chHhh--h
Q psy78 389 GETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSS-GAYKFAVTGKSWELIRDQMP-ELIPR--I 464 (523)
Q Consensus 389 ~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~l~~~~~-~~~~~--~ 464 (523)
+...+.++............ ...+.+.................. ....++++|+.+....+... ..|.. .
T Consensus 694 ~m~~i~i~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~ 767 (1151)
T KOG0206|consen 694 DMKLIIINTETSEELSSLDA------TAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAK 767 (1151)
T ss_pred CceEEEEecCChhhhcchhh------HHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHHHH
Confidence 88888877655331100000 000000000000000000001111 36889999999887665422 23333 4
Q ss_pred hcccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 465 IVKGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 465 ~~~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
.|+..++||++|.||+.+++..++. +..++|||||.||++|++.||+||.++..++-
T Consensus 768 ~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGm 825 (1151)
T KOG0206|consen 768 RCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGM 825 (1151)
T ss_pred hcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhh
Confidence 5678899999999999999999765 88999999999999999999999999987653
No 29
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.95 E-value=3.2e-27 Score=252.51 Aligned_cols=221 Identities=28% Similarity=0.366 Sum_probs=165.8
Q ss_pred HHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeE
Q psy78 189 IVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINC 268 (523)
Q Consensus 189 ~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~ 268 (523)
++.+++++++++||||||+++|+++..|+.+++|+ ||++|+++++|.++++++
T Consensus 196 ~~~~~~svlv~~~P~aL~la~~~~~~~~~~~~~k~---------------------------gilik~~~~le~l~~v~~ 248 (536)
T TIGR01512 196 WVYRALVLLVVASPCALVISAPAAYLSAISAAARH---------------------------GILIKGGAALEALAKIKT 248 (536)
T ss_pred HHHHHHHHHhhcCccccccchHHHHHHHHHHHHHC---------------------------CeEEcCcHHHHhhcCCCE
Confidence 68899999999999999999999999999999999 999999999999999999
Q ss_pred Eeeccc--cccccccccC--------------CCCcch--hHHHHH---------HHHHhhccCeEE------EEEEecC
Q psy78 269 VCFDKM--FESTGWTLEE--------------PMKFVP--ENIVSV---------LSEYTEQGYRVI------ALASRTL 315 (523)
Q Consensus 269 v~fDK~--~~~~~~~~~~--------------~~~~~~--~~~~~~---------~~~~~~~G~r~l------~~a~k~l 315 (523)
+||||. .+..+..+.+ .....| ..+.+. .+++.++|++.. .++.+++
T Consensus 249 i~fDKTGTLT~~~~~v~~~~~~~~l~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~ig~~~~ 328 (536)
T TIGR01512 249 VAFDKTGTLTTGRPKVVDVVPAEVLRLAAAAEQASSHPLARAIVDYARKRENVESVEEVPGEGVRAVVDGGEVRIGNPRS 328 (536)
T ss_pred EEECCCCCCcCCceEEEEeeHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCcceEEecCCeEEEEECCeEEEEcCHHH
Confidence 999992 1111111000 000111 111111 112234444321 1222111
Q ss_pred Cchh---HHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC-cEEEEcCCCHhhHHHHHHHcCccCCCCe
Q psy78 316 SIED---YKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV-KVVMITGDNIQTAISVAKECGIIDPGET 391 (523)
Q Consensus 316 ~~~~---~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi-~vvi~TGr~~~~a~~ia~~lgi~~~~~~ 391 (523)
..+. ...........+..|..+.|.+.++|+++|+++++|++|+++|+ +++|+|||+...+..+++++|++
T Consensus 329 ~~~~~~~~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~----- 403 (536)
T TIGR01512 329 LEAAVGARPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID----- 403 (536)
T ss_pred HhhcCCcchhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh-----
Confidence 1000 00000011124667899999999999999999999999999999 99999999999999999999995
Q ss_pred EEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEE
Q psy78 392 VVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIF 471 (523)
Q Consensus 392 ~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~ 471 (523)
.++
T Consensus 404 -----------------------------------------------------------------------------~~f 406 (536)
T TIGR01512 404 -----------------------------------------------------------------------------EVH 406 (536)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 245
Q ss_pred EcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec-cc
Q psy78 472 ARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS-EA 518 (523)
Q Consensus 472 ~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg-na 518 (523)
++..|++|..+++.+++.+++++|+|||.||++|++.||+||+|| ++
T Consensus 407 ~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~ 454 (536)
T TIGR01512 407 AELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASG 454 (536)
T ss_pred hccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCc
Confidence 677899999999999999999999999999999999999999999 44
No 30
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.94 E-value=1.2e-26 Score=249.67 Aligned_cols=223 Identities=29% Similarity=0.386 Sum_probs=167.1
Q ss_pred HHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCcee
Q psy78 188 DIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSIN 267 (523)
Q Consensus 188 ~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~ 267 (523)
.++.+++++++++||||||+++|++++.++.+|+|+ ||++|+++++|.+++++
T Consensus 195 ~~~~~~~~vlv~~~P~al~l~~~~~~~~~~~~~~~~---------------------------gilvk~~~~le~l~~v~ 247 (556)
T TIGR01525 195 GALYRALAVLVVACPCALGLATPVAILVAIGVAARR---------------------------GILIKGGDALEKLAKVK 247 (556)
T ss_pred hHHHHHHHHHhhccccchhehhHHHHHHHHHHHHHC---------------------------CceecCchHHHHhhcCC
Confidence 678899999999999999999999999999999999 99999999999999999
Q ss_pred EEeeccc--c-----ccccccc-cC----CC----------C--cch--hHHHH-------------HHHHHhhccCeE-
Q psy78 268 CVCFDKM--F-----ESTGWTL-EE----PM----------K--FVP--ENIVS-------------VLSEYTEQGYRV- 307 (523)
Q Consensus 268 ~v~fDK~--~-----~~~~~~~-~~----~~----------~--~~~--~~~~~-------------~~~~~~~~G~r~- 307 (523)
++||||. . +..+... .+ .+ + ..| ..+.+ ..++..++|++.
T Consensus 248 ~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 327 (556)
T TIGR01525 248 TVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLALAAALEQSSSHPLARAIVRYAKKRGLELPKQEDVEEVPGKGVEAT 327 (556)
T ss_pred EEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCcccccCeeEecCCeEEEE
Confidence 9999991 1 1110000 00 00 0 001 00000 111223334332
Q ss_pred ------EEEEEecCC---chh-H--H-H-h----hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCC-CcEEEE
Q psy78 308 ------IALASRTLS---IED-Y--K-H-L----NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDAR-VKVVMI 368 (523)
Q Consensus 308 ------l~~a~k~l~---~~~-~--~-~-~----~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~G-i~vvi~ 368 (523)
+.++.+++- ... . + . . .......+..|.+++|.+.++|+++|+++++|++|+++| ++++|+
T Consensus 328 ~~g~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~iv 407 (556)
T TIGR01525 328 VDGQEEVRIGNPRLLELAAEPISASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVML 407 (556)
T ss_pred ECCeeEEEEecHHHHhhcCCCchhhHHHHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEE
Confidence 222222210 000 0 0 0 0 000112456789999999999999999999999999999 999999
Q ss_pred cCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecc
Q psy78 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGK 448 (523)
Q Consensus 369 TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 448 (523)
|||+..++..+++++|++
T Consensus 408 Tgd~~~~a~~i~~~lgi~-------------------------------------------------------------- 425 (556)
T TIGR01525 408 TGDNRSAAEAVAAELGID-------------------------------------------------------------- 425 (556)
T ss_pred eCCCHHHHHHHHHHhCCC--------------------------------------------------------------
Confidence 999999999999999995
Q ss_pred cHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78 449 SWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE 519 (523)
Q Consensus 449 ~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~ 519 (523)
.++.++.|++|...++.+++.+++++|+|||.||++|++.||+||+||++.
T Consensus 426 --------------------~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~ 476 (556)
T TIGR01525 426 --------------------EVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGS 476 (556)
T ss_pred --------------------eeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCC
Confidence 366778899999999999999999999999999999999999999999754
No 31
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.94 E-value=1.4e-26 Score=263.31 Aligned_cols=222 Identities=22% Similarity=0.323 Sum_probs=159.3
Q ss_pred hhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhh----h-----cc--------hhhhhccceeeeeeeeccCCCcchH
Q psy78 290 PENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLN----Y-----MK--------REDIEKDLEFLGLIILENRLKPQTE 352 (523)
Q Consensus 290 ~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~----~-----~~--------~~~~e~dl~~lG~i~~~d~lr~~t~ 352 (523)
++.+.+.+++++++|+||+++|+|++++++.+.+. . .+ .+.+|+|++++|+++++|++|++++
T Consensus 653 ~~~~~~~l~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~ 732 (1178)
T PLN03190 653 IRATEAHLHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVP 732 (1178)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHH
Confidence 45567888999999999999999999754322111 0 01 1467999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhccc-----
Q psy78 353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNY----- 427 (523)
Q Consensus 353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 427 (523)
++|++|+++|+++||+|||+..+|.++|+++|+..++...+..+.......... + ............
T Consensus 733 ~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~-l-------~~~~~~~~~~~~~~~~~ 804 (1178)
T PLN03190 733 EAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKS-L-------EDALVMSKKLTTVSGIS 804 (1178)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHH-H-------HHHhhhhhhcccccccc
Confidence 999999999999999999999999999999999887766655544321100000 0 000000000000
Q ss_pred CchhhhhccCCCceEEEEecccHHHHHh-hCcchHhhhhc--ccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhH
Q psy78 428 SKTEEELGLSSGAYKFAVTGKSWELIRD-QMPELIPRIIV--KGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDC 503 (523)
Q Consensus 428 ~~~~~~~~~~~~~~~l~i~~~~~~~l~~-~~~~~~~~~~~--~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~ 503 (523)
...............++++|+.+..+.+ ..++.+.++.. +..++||++|.||+.+|+.+++. ++.|+|+|||.||+
T Consensus 805 ~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv 884 (1178)
T PLN03190 805 QNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDV 884 (1178)
T ss_pred ccccccccccCCceEEEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchH
Confidence 0000000112345679999999988764 23344555544 34479999999999999999997 57899999999999
Q ss_pred HHHHhCCccEEecccC
Q psy78 504 GALRAAHAGISLSEAE 519 (523)
Q Consensus 504 ~MLk~A~vGIAMgna~ 519 (523)
+||++|||||++.+.+
T Consensus 885 ~mIq~AdVGIGIsG~E 900 (1178)
T PLN03190 885 SMIQMADVGVGISGQE 900 (1178)
T ss_pred HHHHhcCeeeeecCch
Confidence 9999999999877665
No 32
>KOG0205|consensus
Probab=99.92 E-value=1.9e-25 Score=226.17 Aligned_cols=263 Identities=24% Similarity=0.366 Sum_probs=183.0
Q ss_pred HhheeeccCCCChhHHHHHHHHHHHHHhhccc----------------ccccc---cceeeeeeeh--hhhhhh------
Q psy78 194 LDIITIVIPPALPATMTVGKLYALTRLKKYNI----------------SCINS---RVINLMTVGK--LYALTR------ 246 (523)
Q Consensus 194 ~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~----------------~~~~~---~t~~~m~v~~--~~~~~~------ 246 (523)
+.+++..+|-|||..++++++.|..||+++++ +|+++ +|.|+.||.+ +...-+
T Consensus 282 lvllIGgiPiamPtVlsvTMAiGs~rLaqqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~ 361 (942)
T KOG0205|consen 282 LVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDD 361 (942)
T ss_pred heeeecccccccceeeeehhhHHHHHHHhcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHH
Confidence 33455559999999999999999999999986 34444 7888877766 311000
Q ss_pred -c---------cccce-------eeecCCccccCCce---eEEeeccccccccccccCCC--------------------
Q psy78 247 -L---------KKYNI-------SCINSRVINVSGSI---NCVCFDKMFESTGWTLEEPM-------------------- 286 (523)
Q Consensus 247 -~---------~~~~i-------l~~~~~~~~~~~~v---~~v~fDK~~~~~~~~~~~~~-------------------- 286 (523)
+ +.++- -.+|| -|..+++ +...||..-+.+.....+++
T Consensus 362 ~~L~A~rAsr~en~DAID~A~v~~L~dP--Keara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~ 439 (942)
T KOG0205|consen 362 VLLTAARASRKENQDAIDAAIVGMLADP--KEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNE 439 (942)
T ss_pred HHHHHHHHhhhcChhhHHHHHHHhhcCH--HHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhc
Confidence 0 00000 00011 1222233 33335552222222211111
Q ss_pred -CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcE
Q psy78 287 -KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKV 365 (523)
Q Consensus 287 -~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~v 365 (523)
.++|+.....++.++++|+|.+++|++..++.+.+ .-....+++|+..+-||+|.++.++|.+...-|+.|
T Consensus 440 ~~~i~~~vh~~id~~AeRGlRSLgVArq~v~e~~~~--------~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~V 511 (942)
T KOG0205|consen 440 DHDIPERVHSIIDKFAERGLRSLAVARQEVPEKTKE--------SPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNV 511 (942)
T ss_pred cCcchHHHHHHHHHHHHhcchhhhhhhhcccccccc--------CCCCCcccccccccCCCCccchHHHHHHHHhcccee
Confidence 26789999999999999999999999998765322 223568999999999999999999999999999999
Q ss_pred EEEcCCCHhhHHHHHHHcCccCCCC---eEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceE
Q psy78 366 VMITGDNIQTAISVAKECGIIDPGE---TVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYK 442 (523)
Q Consensus 366 vi~TGr~~~~a~~ia~~lgi~~~~~---~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (523)
.|+|||...-+....+++|+-.+-. ..+-.++..
T Consensus 512 kmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~------------------------------------------- 548 (942)
T KOG0205|consen 512 KMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDG------------------------------------------- 548 (942)
T ss_pred eeecchHHHHHHhhhhhhccccCcCCchhhccCCCCC-------------------------------------------
Confidence 9999999999999999999853210 000000000
Q ss_pred EEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 443 FAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 443 l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
.+.+- ...+++.+.+-|+.+.|++|..+++.|+++++.+.|.|||.||.|+||.||+|||..+|.+.
T Consensus 549 -~~~~~-----------~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~atda 615 (942)
T KOG0205|consen 549 -SMPGS-----------PVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADATDA 615 (942)
T ss_pred -CCCCC-----------cHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccchhh
Confidence 00011 11122333457899999999999999999999999999999999999999999999998764
No 33
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.3e-24 Score=213.79 Aligned_cols=107 Identities=36% Similarity=0.534 Sum_probs=101.5
Q ss_pred hhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEE
Q psy78 331 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF 410 (523)
Q Consensus 331 ~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~ 410 (523)
+..|..++|.+.++|-++|+.+|-+.+||+.||+.+|+|||++.||..+|+|.|.|
T Consensus 432 V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVD------------------------ 487 (681)
T COG2216 432 VVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD------------------------ 487 (681)
T ss_pred EEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCch------------------------
Confidence 34688999999999999999999999999999999999999999999999999997
Q ss_pred EecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCC
Q psy78 411 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLG 490 (523)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~ 490 (523)
.+.++++|++|...++.-|..+
T Consensus 488 ----------------------------------------------------------dfiAeatPEdK~~~I~~eQ~~g 509 (681)
T COG2216 488 ----------------------------------------------------------DFIAEATPEDKLALIRQEQAEG 509 (681)
T ss_pred ----------------------------------------------------------hhhhcCChHHHHHHHHHHHhcC
Confidence 3678999999999999999999
Q ss_pred CEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78 491 YYVAMCGDGANDCGALRAAHAGISLSEAE 519 (523)
Q Consensus 491 ~~V~a~GDG~ND~~MLk~A~vGIAMgna~ 519 (523)
+-|+|+|||.||+|+|.+||+|+||.++.
T Consensus 510 rlVAMtGDGTNDAPALAqAdVg~AMNsGT 538 (681)
T COG2216 510 RLVAMTGDGTNDAPALAQADVGVAMNSGT 538 (681)
T ss_pred cEEEEcCCCCCcchhhhhcchhhhhcccc
Confidence 99999999999999999999999998764
No 34
>KOG0208|consensus
Probab=99.81 E-value=2.9e-20 Score=197.06 Aligned_cols=143 Identities=27% Similarity=0.485 Sum_probs=126.3
Q ss_pred ChHHHHHHHHHHHHHHhhhhccccccccccCCCCccCCccchhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHH
Q psy78 1 MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSII 80 (523)
Q Consensus 1 ~~~q~~i~~~~q~~~~~~~~~q~w~~~~~~~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~ 80 (523)
+++|+++.+++|.+.+++++.||||.|+.+.-+++.+|++||++|++|+||||..|+++|+|+|||+|+|+|++|...+.
T Consensus 987 l~~q~vli~l~q~i~~l~~~~qpw~~pp~~~~~~nt~s~~~T~lF~vS~fqYi~~a~v~S~g~pfr~pl~~n~~f~~~i~ 1066 (1140)
T KOG0208|consen 987 LLLQIVLICLVQWILTLIVEPQPWYEPPNPQVDDNTQSSDNTSLFFVSSFQYIFIALVLSKGSPFRRPLWKNVLFKVFIT 1066 (1140)
T ss_pred hHHHHHHHHHHHHhhheeeccccceecCCCCcCcccccceeeEeeehhHHHHHHhheeeccCCcccCchhcCceeeeehh
Confidence 47999999999999999999999999988877889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhheeecCchHH-HHhccccCCCCCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q psy78 81 IMTWVCIYITLIPSEFI-IQFLQLRFPPNMQFPLIVIYLAICNFVLSLFI---ENFIIHYLLMIKFK 143 (523)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~l~~~p~~~f~~~l~~~~~~~~~~~~~~---E~~~~~~~~~~~~~ 143 (523)
.+.+.++++.+.+.... ...+++...|...+|++++++.+.+++..+.. |+++..+.++...+
T Consensus 1067 ~i~~~~i~l~~~~~~~~~~~l~~~t~~~~~~~~fii~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1133 (1140)
T KOG0208|consen 1067 VIILSTIYLLFVNYLFIEWKLLQLTYIPTTFDRFIILLVVISYFALNYIQPSVGRMLGDKSMRDLVP 1133 (1140)
T ss_pred hHHhhhhhhhhccccchhhhhhceeccCcchhHHHHHHHHHHHHHHHHhhhhhhchhhhHHHHHhcc
Confidence 99999999888766542 36799999997788999999999999988888 56666665554433
No 35
>KOG0209|consensus
Probab=99.79 E-value=1.1e-19 Score=188.98 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=125.5
Q ss_pred ChHHHHHHHHHHHHHHhhhhcccccccccc----CCCCccCCccchhHHHHHHHHHHhhheeeecCCCcccccccchhHH
Q psy78 1 MFFQLILMVSMQIISFIIVHKFAWFEPFVY----TNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFI 76 (523)
Q Consensus 1 ~~~q~~i~~~~q~~~~~~~~~q~w~~~~~~----~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~ 76 (523)
++++++.|+++|+..++|+.++..-..++. .++++.||..||++|++++.||+.|++|||+|+|||+++.+|++++
T Consensus 1009 ~i~svl~QFaVH~~tLvYi~~~a~~~~p~~~~vdl~~~F~PsllNt~vyiisl~~QvsTFAVNY~G~PF~Esl~eNK~l~ 1088 (1160)
T KOG0209|consen 1009 IILSVLLQFAVHIATLVYITGEAYKLEPPEEKVDLEEKFSPSLLNTTVYIISLAQQVSTFAVNYQGRPFRESLRENKGLL 1088 (1160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhcCCcccccChhcccChhhhhhHHHHHHHHHHHHHhhhhccCcchhhhhhhccchH
Confidence 378999999999999999998887543332 2567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy78 77 LSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLL 138 (523)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~~~~~~~~~~~~~E~~~~~~~~ 138 (523)
+++++..++.+.+..+..+.++..|+++++| .+||..+++.++.++++||++|+++..+|.
T Consensus 1089 y~ll~~~~~~~~l~tg~~peLn~~~~lV~mp-~~fk~~ll~~l~lD~v~c~~~er~~~f~f~ 1149 (1160)
T KOG0209|consen 1089 YGLLGSAGVIIALATGSSPELNEKFELVDMP-QDFKIKLLAVLVLDFVLCYLVERVLKFFFG 1149 (1160)
T ss_pred HHHHHHHHHHHHHHhccChhHHhheeeeccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999 599999999999999999999998877765
No 36
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.76 E-value=1.3e-18 Score=171.08 Aligned_cols=186 Identities=16% Similarity=0.148 Sum_probs=112.8
Q ss_pred cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-
Q psy78 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV- 412 (523)
Q Consensus 334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~- 412 (523)
|+|++. -..++.+.++++|++++++|++++++|||+...+..++++++++.+..++++.||+.+.+.......+..
T Consensus 11 DGTLl~---~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~~~i~~~~ 87 (270)
T PRK10513 11 DGTLLL---PDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADGETVAQTA 87 (270)
T ss_pred CCcCcC---CCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCCCEEEecC
Confidence 445553 1346999999999999999999999999999999999999999766678999999877643222222221
Q ss_pred cCcchhhh---hhhhccc---------------Cch-----------------hhhhccC-CCceEEEEec--ccHHHHH
Q psy78 413 SGVSAIQT---KAKKLNY---------------SKT-----------------EEELGLS-SGAYKFAVTG--KSWELIR 454 (523)
Q Consensus 413 ~~~~~~~~---~~~~~~~---------------~~~-----------------~~~~~~~-~~~~~l~i~~--~~~~~l~ 454 (523)
.+...... ....... ... ....... .....+.+.. +..+.+.
T Consensus 88 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 167 (270)
T PRK10513 88 LSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEPEILDAAI 167 (270)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCHHHHHHHH
Confidence 11111100 0000000 000 0000000 0011111111 1122222
Q ss_pred hhCcchHh---hhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 455 DQMPELIP---RIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 455 ~~~~~~~~---~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
+.+...+. ........+.++.|. +|+.+++.|+++ .++|++||||.||++||+.||+||||+||.+++
T Consensus 168 ~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~v 244 (270)
T PRK10513 168 ARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSV 244 (270)
T ss_pred HHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccHHH
Confidence 22221111 011112235567765 899999999986 478999999999999999999999999998764
No 37
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.74 E-value=3.1e-18 Score=167.71 Aligned_cols=180 Identities=18% Similarity=0.237 Sum_probs=111.9
Q ss_pred eeeeeccC-CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcch
Q psy78 339 GLIILENR-LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA 417 (523)
Q Consensus 339 G~i~~~d~-lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~ 417 (523)
|++.-.+. +++.++++|++++++|++++++|||+...+.++.++++++. ++++.||+.+... .+.+.....+...
T Consensus 12 GTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~---~~I~~NGa~i~~~-~~~i~~~~l~~~~ 87 (264)
T COG0561 12 GTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG---PLITFNGALIYNG-GELLFQKPLSRED 87 (264)
T ss_pred CCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc---cEEEeCCeEEecC-CcEEeeecCCHHH
Confidence 44444444 99999999999999999999999999999999999999964 8999999988776 3333323222222
Q ss_pred hhhhhhhcc---cC-----c---------h--hhh-------------hccCCC---ceEEEEecccHHHHHhhCcchHh
Q psy78 418 IQTKAKKLN---YS-----K---------T--EEE-------------LGLSSG---AYKFAVTGKSWELIRDQMPELIP 462 (523)
Q Consensus 418 ~~~~~~~~~---~~-----~---------~--~~~-------------~~~~~~---~~~l~i~~~~~~~l~~~~~~~~~ 462 (523)
......... .. . . ... ...... ...+....+......+.....+.
T Consensus 88 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (264)
T COG0561 88 VEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVEALRKRFP 167 (264)
T ss_pred HHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHHHHhhhcc
Confidence 111110000 00 0 0 000 000000 01111112233333322222211
Q ss_pred ----hhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 463 ----RIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 463 ----~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
..........++.|. +|+.+++.+.++ .++|+||||+.||++||+.||.|||||||.+++
T Consensus 168 ~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~ 237 (264)
T COG0561 168 DLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEEL 237 (264)
T ss_pred ccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHH
Confidence 111122223666776 899999999995 357999999999999999999999999996653
No 38
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.74 E-value=3.7e-18 Score=167.97 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=107.3
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh-
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK- 423 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~- 423 (523)
..+.+++++||++|+++|++++++|||+...+..+.++++++ .++++.||+.+.+.....+.....+.+.......
T Consensus 18 ~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~I~~~~~~~l~~~~i~~~~~~~i~~~ 94 (272)
T PRK15126 18 HHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD---AYLITGNGTRVHSLEGELLHRQDLPADVAELVLHQ 94 (272)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC---CcEEecCCcEEEcCCCCEEEeecCCHHHHHHHHHH
Confidence 459999999999999999999999999999999999999985 4688999987765333222222222111111000
Q ss_pred --hcc--------------cCchh----------------hhhccCCCceEEEEe--cccHHHHHhhCcchHhh---hhc
Q psy78 424 --KLN--------------YSKTE----------------EELGLSSGAYKFAVT--GKSWELIRDQMPELIPR---IIV 466 (523)
Q Consensus 424 --~~~--------------~~~~~----------------~~~~~~~~~~~l~i~--~~~~~~l~~~~~~~~~~---~~~ 466 (523)
... ..... ...........+.+. .+..+.+.+.+...+.. ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (272)
T PRK15126 95 QWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQIQLNEALGERAHLCF 174 (272)
T ss_pred hhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 000 00000 000000011111111 12222222222111110 111
Q ss_pred ccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 467 KGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 467 ~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
....+.++.|. +|+.+++.|+++ .++|+|||||.||++||+.||+|||||||.+++
T Consensus 175 s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~v 236 (272)
T PRK15126 175 SATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQL 236 (272)
T ss_pred cCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHH
Confidence 11235567776 799999999987 468999999999999999999999999998764
No 39
>PRK10976 putative hydrolase; Provisional
Probab=99.71 E-value=3.6e-17 Score=160.42 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=104.7
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.+++++++++|++++++|++++++|||+...+.++.++++++ .++++.||+.+.+.....+.....+......-...
T Consensus 18 ~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~ 94 (266)
T PRK10976 18 HTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK---SYMITSNGARVHDTDGNLIFSHNLDRDIASDLFGV 94 (266)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC---CeEEEcCCcEEECCCCCEehhhcCCHHHHHHHHHh
Confidence 459999999999999999999999999999999999999985 46888898866543222221111111100000000
Q ss_pred c------------------ccCchh----------------hhhccCCCceEEEEec---ccHHHHHhhCcchHhh---h
Q psy78 425 L------------------NYSKTE----------------EELGLSSGAYKFAVTG---KSWELIRDQMPELIPR---I 464 (523)
Q Consensus 425 ~------------------~~~~~~----------------~~~~~~~~~~~l~i~~---~~~~~l~~~~~~~~~~---~ 464 (523)
. ...... ...........+.+.. +..+.+.+.+.+.+.. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (266)
T PRK10976 95 VHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLPLEQAINARWGDRVNV 174 (266)
T ss_pred hcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHHHHHHHHHHhCCcEEE
Confidence 0 000000 0000000111111211 1222222211111110 0
Q ss_pred hcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 465 IVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 465 ~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
......+.++.|. +|+.+++.++++ .++|+|||||.||++||+.||+|||||||.+++
T Consensus 175 ~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~v 238 (266)
T PRK10976 175 SFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRL 238 (266)
T ss_pred EEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHH
Confidence 1111235566775 899999999986 478999999999999999999999999998754
No 40
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.68 E-value=2.2e-16 Score=155.09 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=106.7
Q ss_pred cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC-----ce
Q psy78 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP-----KV 408 (523)
Q Consensus 334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~-----~~ 408 (523)
|+|++. -...+.+.++++|++|+++|++++++|||+...+.++++++|++. .++++.||+.+...... ..
T Consensus 15 DGTLL~---~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~~--~~~I~~NGa~I~~~~~~~~~~~~~ 89 (271)
T PRK03669 15 DGTLLD---SHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQG--LPLIAENGAVIQLDEQWQDHPDFP 89 (271)
T ss_pred ccCCcC---CCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCCC--CcEEEeCCCEEEecCcccCCCCce
Confidence 455553 133477899999999999999999999999999999999999852 47999999877643221 11
Q ss_pred EEE-ecCcchhh---hhhhhc-ccC--------ch----------hh-h-hccCCCceEEEEec--ccHHHHHhhCcchH
Q psy78 409 YFT-VSGVSAIQ---TKAKKL-NYS--------KT----------EE-E-LGLSSGAYKFAVTG--KSWELIRDQMPELI 461 (523)
Q Consensus 409 ~~~-~~~~~~~~---~~~~~~-~~~--------~~----------~~-~-~~~~~~~~~l~i~~--~~~~~l~~~~~~~~ 461 (523)
.+. ..+.+... ...... ... .. .. . .........+.... +.+..+.+......
T Consensus 90 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (271)
T PRK03669 90 RIISGISHGEIRQVLNTLREKEGFKFTTFDDVDDATIAEWTGLSRSQAALARLHEASVTLIWRDSDERMAQFTARLAELG 169 (271)
T ss_pred EeecCCCHHHHHHHHHHHHHhcCCceeecccCCHHHHHHHhCCCHHHHHHHhccccCceeEecCCHHHHHHHHHHHHHCC
Confidence 111 11111111 100000 000 00 00 0 00000011122221 12222222211100
Q ss_pred hhhhcccEEEEcCChH--hHHHHHHHHHHC-------CCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78 462 PRIIVKGAIFARMSSD--QKQQLVLELQQL-------GYYVAMCGDGANDCGALRAAHAGISLSEAES 520 (523)
Q Consensus 462 ~~~~~~~~v~~~~~p~--~K~~~i~~L~~~-------~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~ 520 (523)
..... ...+.++.|. +|+.+++.|+++ .++|+|||||.||++||+.||+||||||+.+
T Consensus 170 ~~~~~-~~~~iEi~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~~~ 236 (271)
T PRK03669 170 LQFVQ-GARFWHVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGLNR 236 (271)
T ss_pred CEEEe-cCeeEEEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCCCC
Confidence 01111 1124566765 899999999884 3679999999999999999999999998773
No 41
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.67 E-value=1.1e-16 Score=151.76 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=105.0
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.++.+++.++|++|+++|++++++|||++..+..++++++++ .++++.||+.+..... .+................
T Consensus 17 ~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~---~~~i~~NGa~i~~~~~-~~~~~~~~~~~~~~~~~~ 92 (215)
T TIGR01487 17 RMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS---GPVVAENGGVIFYNKE-DIFLANMEEEWFLDEEKK 92 (215)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC---CcEEEccCcEEEeCCC-cEEEecccchhhHHHhhh
Confidence 359999999999999999999999999999999999999875 4688889987765432 222221111111110000
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcC
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGD 498 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GD 498 (523)
.....................+.+..+.+.+.....-...... ..+.++.|. +|+.+++.++++ .+++++|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGD 171 (215)
T TIGR01487 93 KRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDS-GFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGD 171 (215)
T ss_pred hhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEec-CceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECC
Confidence 0000000000000111222233333333322211100001111 123455554 899999999885 356999999
Q ss_pred ChhhHHHHHhCCccEEecccCCCC
Q psy78 499 GANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 499 G~ND~~MLk~A~vGIAMgna~~~v 522 (523)
+.||++|++.||+|+||+||.+++
T Consensus 172 s~ND~~ml~~ag~~vam~na~~~~ 195 (215)
T TIGR01487 172 SENDIDLFRVVGFKVAVANADDQL 195 (215)
T ss_pred CHHHHHHHHhCCCeEEcCCccHHH
Confidence 999999999999999999998764
No 42
>PLN02887 hydrolase family protein
Probab=99.66 E-value=1.1e-16 Score=170.00 Aligned_cols=186 Identities=16% Similarity=0.139 Sum_probs=110.0
Q ss_pred cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCC------CeEEEeecCCCCCCCCCc
Q psy78 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG------ETVVDVSAVPGGLKECPK 407 (523)
Q Consensus 334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~------~~~i~~ng~~~~~~~~~~ 407 (523)
|+|++. -..++.+.+++||++++++|++++++|||+...+..+.++++++... .+.++.||+.+.+.....
T Consensus 316 DGTLLn---~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I~~NGA~I~d~~g~~ 392 (580)
T PLN02887 316 DGTLLN---SKSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGVFLQGLLVYGRQGRE 392 (580)
T ss_pred CCCCCC---CCCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEEeecCeEEEECCCcE
Confidence 455553 23459999999999999999999999999999999999999876432 357778988776433333
Q ss_pred eEEEecCcchhhhhhhhc---cc--------------Cch-----h-------------hhhc-cCCCceEEEEeccc--
Q psy78 408 VYFTVSGVSAIQTKAKKL---NY--------------SKT-----E-------------EELG-LSSGAYKFAVTGKS-- 449 (523)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~---~~--------------~~~-----~-------------~~~~-~~~~~~~l~i~~~~-- 449 (523)
+.....+.+......... .. ... . .... .......+.+.+..
T Consensus 393 I~~~~L~~e~v~eIi~~~~~~~i~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~i~Ki~~~~~~e~ 472 (580)
T PLN02887 393 IYRSNLDQEVCREACLYSLEHKIPLIAFSQDRCLTLFDHPLVDSLHTIYHEPKAEIMSSVDQLLAAADIQKVIFLDTAEG 472 (580)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCeEEEEECCeEEEecCchHHHHHHHhhccccccccCCHHHhhcccCeeEEEEEcChHH
Confidence 333322222111100000 00 000 0 0000 00001111111111
Q ss_pred -HHHHHhhCcchHh---hhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78 450 -WELIRDQMPELIP---RIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAE 519 (523)
Q Consensus 450 -~~~l~~~~~~~~~---~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~ 519 (523)
.+.+.+.....+. ........+.++.|. +|+.+++.|+++ .++|+|||||.||++||+.||+|||||||.
T Consensus 473 ~~~~l~~~l~~~~~~~~~v~~S~~~~lEI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA~ 552 (580)
T PLN02887 473 VSSVLRPYWSEATGDRANVVQAQPDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNGA 552 (580)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCcEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCCC
Confidence 1111111111110 011111235566666 899999999997 468999999999999999999999999998
Q ss_pred CCC
Q psy78 520 SPI 522 (523)
Q Consensus 520 ~~v 522 (523)
++|
T Consensus 553 eeV 555 (580)
T PLN02887 553 EKT 555 (580)
T ss_pred HHH
Confidence 754
No 43
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.65 E-value=4.7e-17 Score=157.67 Aligned_cols=174 Identities=18% Similarity=0.266 Sum_probs=110.0
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhhhh
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQTKA 422 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~~~ 422 (523)
..++.++++++|++++++|++++++|||++..+..+.+++++. .++++.||+.+ ........+.. .+......-.
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~---~~~I~~nGa~i-~~~~~~~l~~~~i~~~~~~~i~ 88 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID---DYFICSNGALI-DDPKGKILYEKPIDSDDVKKIL 88 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC---SEEEEGGGTEE-EETTTEEEEEESB-HHHHHHHH
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch---hhhccccccee-eecccccchhhheeccchhhee
Confidence 4568999999999999999999999999999999999999986 78999999988 33333333322 2211111000
Q ss_pred ---hh--cc-----------cCc-------------------hhhhh--ccCCCceEEEEecccHHHHHhhCcchHhhh-
Q psy78 423 ---KK--LN-----------YSK-------------------TEEEL--GLSSGAYKFAVTGKSWELIRDQMPELIPRI- 464 (523)
Q Consensus 423 ---~~--~~-----------~~~-------------------~~~~~--~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~- 464 (523)
.. +. ... ..... .....+..+..+.+.++.+.+.+.+.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~ 168 (254)
T PF08282_consen 89 KYLKEHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLI 168 (254)
T ss_dssp HHHHHTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTE
T ss_pred ehhhhcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcce
Confidence 00 00 000 00000 001111222222333444444333333221
Q ss_pred --hcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 465 --IVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 465 --~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
......+.+++|. +|+.+++.+.++ .+++++|||+.||++||+.||.||||+||.++
T Consensus 169 ~~~~~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~ 233 (254)
T PF08282_consen 169 DVVRSSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPE 233 (254)
T ss_dssp EEEEEETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HH
T ss_pred eEEEecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHH
Confidence 1111235566665 899999999985 47899999999999999999999999999865
No 44
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.64 E-value=9.1e-16 Score=146.54 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=103.0
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhh-hhhh
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQT-KAKK 424 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 424 (523)
.+.++++++|++++++|++++++|||++..+..+++++|+. .++++.||..+.........+.......... ....
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~---~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP---DPVIAENGGEISYNEGMDDIFLAYLEEEWFLDIVIA 91 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC---CeEEEecCcEEEeCCCCceEEecccCHHHHHHHHHh
Confidence 58999999999999999999999999999999999999853 5788999987655433222222111111110 0000
Q ss_pred cccCchhhhhc--cCCCceEEEEec--ccHHHHHhhCcchHhhhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEE
Q psy78 425 LNYSKTEEELG--LSSGAYKFAVTG--KSWELIRDQMPELIPRIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVA 494 (523)
Q Consensus 425 ~~~~~~~~~~~--~~~~~~~l~i~~--~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~ 494 (523)
........... ............ +....+.+.....+. .. ....+.++.|. +|+.+++.++++ .++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i 169 (225)
T TIGR01482 92 KTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLV-AV-DSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETL 169 (225)
T ss_pred cccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEE-Ee-cCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEE
Confidence 00000000000 000111111111 111222222111000 00 11224455554 899999999886 46899
Q ss_pred EEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 495 MCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 495 a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
+|||+.||++|++.||+||||+||.+++
T Consensus 170 ~~GD~~NDi~m~~~ag~~vam~Na~~~~ 197 (225)
T TIGR01482 170 VCGDSENDIDLFEVPGFGVAVANAQPEL 197 (225)
T ss_pred EECCCHhhHHHHHhcCceEEcCChhHHH
Confidence 9999999999999999999999998753
No 45
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.62 E-value=6.6e-16 Score=148.02 Aligned_cols=173 Identities=20% Similarity=0.152 Sum_probs=103.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhh---hhh
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQ---TKA 422 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~---~~~ 422 (523)
.++++++++|++++++|++++++|||+...+..++++++++ .++++.||+.+.........+.... +... ...
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~i~~nGa~i~~~~~~~~~~~~~~-~~~~~~~~~~ 95 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS---GPVIAENGGVISVGFDGKRIFLGDI-EECEKAYSEL 95 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC---CcEEEecCeEEEEcCCCCEEEEcch-HHHHHHHHHH
Confidence 48999999999999999999999999999999999999985 4689999987654422222222111 1111 100
Q ss_pred hh-cccCchhhhhccC-C-CceEEEEecccHHHHHhhCcchHhhh-hcccEEEEcCChH--hHHHHHHHHHHC----CCE
Q psy78 423 KK-LNYSKTEEELGLS-S-GAYKFAVTGKSWELIRDQMPELIPRI-IVKGAIFARMSSD--QKQQLVLELQQL----GYY 492 (523)
Q Consensus 423 ~~-~~~~~~~~~~~~~-~-~~~~l~i~~~~~~~l~~~~~~~~~~~-~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~ 492 (523)
.. ............. . ............+.+.+......... ......+.++.|. +|+.+++.+.++ .++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~ 175 (230)
T PRK01158 96 KKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEE 175 (230)
T ss_pred HHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHH
Confidence 00 0000000000000 0 00011112222222221111000000 0011123455555 699999999886 467
Q ss_pred EEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 493 VAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 493 V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
+++|||+.||++|++.||+||||+||.+++
T Consensus 176 ~i~~GD~~NDi~m~~~ag~~vam~Na~~~v 205 (230)
T PRK01158 176 VAAIGDSENDLEMFEVAGFGVAVANADEEL 205 (230)
T ss_pred EEEECCchhhHHHHHhcCceEEecCccHHH
Confidence 999999999999999999999999998754
No 46
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.62 E-value=8e-16 Score=145.54 Aligned_cols=98 Identities=45% Similarity=0.658 Sum_probs=91.2
Q ss_pred ccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe
Q psy78 333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV 412 (523)
Q Consensus 333 ~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~ 412 (523)
.+..++|.+.+.|+++++++++|++|+++|++++|+|||+..++..+++++||..
T Consensus 114 ~~~~~~~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~------------------------- 168 (215)
T PF00702_consen 114 VNLIFLGLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD------------------------- 168 (215)
T ss_dssp ESHEEEEEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS-------------------------
T ss_pred ecCeEEEEEeecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc-------------------------
Confidence 3799999999999999999999999999999999999999999999999999941
Q ss_pred cCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcC--ChHhH--HHHHHHHHH
Q psy78 413 SGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARM--SSDQK--QQLVLELQQ 488 (523)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~p~~K--~~~i~~L~~ 488 (523)
..++++. +|++| ..+++.|+.
T Consensus 169 -------------------------------------------------------~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 169 -------------------------------------------------------SIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp -------------------------------------------------------EEEEESHETTTHHHHHHHHHHHHTC
T ss_pred -------------------------------------------------------ccccccccccccchhHHHHHHHHhc
Confidence 1478888 99999 999999997
Q ss_pred CCCEEEEEcCChhhHHHHHhCC
Q psy78 489 LGYYVAMCGDGANDCGALRAAH 510 (523)
Q Consensus 489 ~~~~V~a~GDG~ND~~MLk~A~ 510 (523)
.++.|+|+|||.||++|+++||
T Consensus 194 ~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 194 KPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp TGGGEEEEESSGGHHHHHHHSS
T ss_pred CCCEEEEEccCHHHHHHHHhCc
Confidence 7779999999999999999997
No 47
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.61 E-value=2.9e-15 Score=145.94 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=101.3
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCc------eEEEecCcchhhh
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK------VYFTVSGVSAIQT 420 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~------~~~~~~~~~~~~~ 420 (523)
..+.++++|++|+++|++++++|||++..+..+++++|++ +++++.||+.+....... +.....+......
T Consensus 17 ~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~---~~~I~~NGa~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 93 (256)
T TIGR01486 17 DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE---DPFIVENGGAIYGPRGWFTEPEYPVIALGIPYEKIRA 93 (256)
T ss_pred CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC---CcEEEcCCeEEEeCCCcccCCCeEEEEcCCCHHHHHH
Confidence 5567999999999999999999999999999999999985 578999998766543322 1222222111111
Q ss_pred hhhh------cccCch----h-------------hhhc-cCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCCh
Q psy78 421 KAKK------LNYSKT----E-------------EELG-LSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSS 476 (523)
Q Consensus 421 ~~~~------~~~~~~----~-------------~~~~-~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p 476 (523)
.... ...... . .... .......+....+..+.+.+.....-...... ..+.++.|
T Consensus 94 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~ei~~ 172 (256)
T TIGR01486 94 RLEELSEELGFKFRGLGDLTDAEIAELTGLSRELAALAQRREYSETILWSEERRERFTEALVELGLEVTHG-NRFYHVLG 172 (256)
T ss_pred HHHHHHHHhCCCccchhhCCHHHHHHHhCcCHHHHHHHhhCccCCceecChHHHHHHHHHHHHcCCEEEeC-CceEEEec
Confidence 0000 000000 0 0000 00011111112222222222211100011111 12445555
Q ss_pred H--hHHHHHHHHHHC------CCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78 477 D--QKQQLVLELQQL------GYYVAMCGDGANDCGALRAAHAGISLSEAES 520 (523)
Q Consensus 477 ~--~K~~~i~~L~~~------~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~ 520 (523)
. +|+.+++.++++ .+++++|||+.||++||+.||+||||+||.+
T Consensus 173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~ 224 (256)
T TIGR01486 173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNG 224 (256)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCC
Confidence 4 899999999875 4679999999999999999999999999984
No 48
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.60 E-value=9e-16 Score=176.15 Aligned_cols=116 Identities=28% Similarity=0.479 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHHHHHHhhhhcccccccccc--CCCCccCCccchhHHHHHHHHHHhhheeeecCCCcccccccchhHHHH
Q psy78 1 MFFQLILMVSMQIISFIIVHKFAWFEPFVY--TNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILS 78 (523)
Q Consensus 1 ~~~q~~i~~~~q~~~~~~~~~q~w~~~~~~--~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~ 78 (523)
+++|.++++++++++|.++.+|+||.|..+ .++++.+|++||++|++++|||+.+++++|.|+|||+|+|+|++|+++
T Consensus 936 i~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~f~~~~~~~~~~~~~~~~g~pf~~~~~~N~~~~~~ 1015 (1054)
T TIGR01657 936 VLIQFVLHILSQVYLVFELHAQPWYKPENPVDLEKENFPNLLNTVLFFVSSFQYLITAIVNSKGPPFREPIYKNKPFVYL 1015 (1054)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccCCCCCCcccccCccHHHHHHHHHHHHHHHHheEEEcCCcchhhhHHHhHHHHHH
Confidence 468999999999999999999999977654 234678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHH
Q psy78 79 IIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIY 117 (523)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~ 117 (523)
+++.+++.+++++.+.++++++|+++++|. +||+.+++
T Consensus 1016 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~ 1053 (1054)
T TIGR01657 1016 LITGLGLLLVLLLDPHPLLGKILQIVPLPQ-EFRSKLLV 1053 (1054)
T ss_pred HHHHHHHHHHhhhCCCHHHHhhheeeeCCH-HHHHHHhh
Confidence 999999999899989999999999999984 89988774
No 49
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.60 E-value=2.5e-15 Score=147.77 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=103.4
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEE-ecCcchhhh---
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFT-VSGVSAIQT--- 420 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~-~~~~~~~~~--- 420 (523)
.++.++++++|++++++|++++++|||++..+..++++++++ .++++.||+.+.+.....+.+. ..+.+....
T Consensus 19 ~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~d~~~~~~l~~~~l~~~~~~~i~~ 95 (272)
T PRK10530 19 KTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD---TPAICCNGTYLYDYQAKKVLEADPLPVQQALQVIE 95 (272)
T ss_pred CccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC---CCEEEcCCcEEEecCCCEEEEecCCCHHHHHHHHH
Confidence 358999999999999999999999999999999999999985 4689999988765433333322 111111110
Q ss_pred hhhhccc-------------Cchh-h------------------------hh--ccCCCceEEEEeccc---HHHHHhhC
Q psy78 421 KAKKLNY-------------SKTE-E------------------------EL--GLSSGAYKFAVTGKS---WELIRDQM 457 (523)
Q Consensus 421 ~~~~~~~-------------~~~~-~------------------------~~--~~~~~~~~l~i~~~~---~~~l~~~~ 457 (523)
....... .... . .. ........+...... ...+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (272)
T PRK10530 96 MLDEHQIHGLMYVDDAMLYEHPTGHVIRTLNWAQTLPPEQRPTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHV 175 (272)
T ss_pred HHHhCCcEEEEEcCCceEecCchHHHHHHhhhhhccchhcccceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHH
Confidence 0000000 0000 0 00 000011112222111 11111111
Q ss_pred cchHhh-hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 458 PELIPR-IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 458 ~~~~~~-~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
.+.+.. .......+.++.|. +|+.+++.++++ .++++||||+.||++|++.||+|||||||.+++
T Consensus 176 ~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgna~~~l 247 (272)
T PRK10530 176 EHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAMGNADDAV 247 (272)
T ss_pred hhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEecCchHHH
Confidence 111000 00000112344544 799999999886 468999999999999999999999999997653
No 50
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.57 E-value=1.1e-14 Score=143.16 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=103.7
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC-------------ceEE
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP-------------KVYF 410 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~-------------~~~~ 410 (523)
.+.+.++++++|++|+++|++++++|||+...+..+++++|++ .+.++.||..+...... ...+
T Consensus 19 ~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~---~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (273)
T PRK00192 19 HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE---DPFIVENGAAIYIPKNYFPFQPDGERLKGDYWVI 95 (273)
T ss_pred CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---CCEEEEcCcEEEecccccccCCccccccCCceEE
Confidence 3457889999999999999999999999999999999999985 36888888866532211 1122
Q ss_pred -EecCcchhhhhh----hhcc--cCch---------------h---hhhccCCCceEEE-E-ecccHHHHHhhCcchHhh
Q psy78 411 -TVSGVSAIQTKA----KKLN--YSKT---------------E---EELGLSSGAYKFA-V-TGKSWELIRDQMPELIPR 463 (523)
Q Consensus 411 -~~~~~~~~~~~~----~~~~--~~~~---------------~---~~~~~~~~~~~l~-i-~~~~~~~l~~~~~~~~~~ 463 (523)
...+.+...... .... .... . ...........+. . +.+..+.+.+.+......
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (273)
T PRK00192 96 ELGPPYEELREILDEISDELGYPLKGFGDLSAEEVAELTGLSGESARLAKDREFSEPFLWNGSEAAKERFEEALKRLGLK 175 (273)
T ss_pred EcCCCHHHHHHHHHHHHHHhCCCeeehhhCCHHHHHHHhCcCHHHHHHHHhcccCCceeecCchHHHHHHHHHHHHcCCE
Confidence 111211111100 0000 0000 0 0000000011111 1 222233332211110000
Q ss_pred hhcccEEEEcCChH-hHHHHHHHHHHC----C-CEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 464 IIVKGAIFARMSSD-QKQQLVLELQQL----G-YYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 464 ~~~~~~v~~~~~p~-~K~~~i~~L~~~----~-~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
... ...+.++.|. +|+.+++.+.++ . +++++|||+.||++|++.||+|+||+||.+++
T Consensus 176 ~~~-~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~ 239 (273)
T PRK00192 176 VTR-GGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPN 239 (273)
T ss_pred EEE-CCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCC
Confidence 001 1123344443 899999999875 6 89999999999999999999999999999874
No 51
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.56 E-value=6.7e-15 Score=143.46 Aligned_cols=174 Identities=16% Similarity=0.222 Sum_probs=105.6
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh-
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK- 423 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~- 423 (523)
.++++++.++|++++++|++++++|||+...+..+.++++++ .++++.||+.+.......+.....+.........
T Consensus 15 ~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~---~~~I~~NGa~i~~~~~~~i~~~~i~~~~~~~i~~~ 91 (256)
T TIGR00099 15 HTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD---TPFITANGAAVIDDQGEILYKKPLDLDLVEEILNF 91 (256)
T ss_pred CccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC---CCEEEcCCcEEECCCCCEEeecCCCHHHHHHHHHH
Confidence 358999999999999999999999999999999999999875 3688899987765432222222211111110000
Q ss_pred --hcc-------------cCc--h--h--hh-------------hccCCCceEEEEec--ccHHHHHhhCcc-hHhh---
Q psy78 424 --KLN-------------YSK--T--E--EE-------------LGLSSGAYKFAVTG--KSWELIRDQMPE-LIPR--- 463 (523)
Q Consensus 424 --~~~-------------~~~--~--~--~~-------------~~~~~~~~~l~i~~--~~~~~l~~~~~~-~~~~--- 463 (523)
... ... . . .. .........+.+.. +..+.+.+.... .+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (256)
T TIGR00099 92 LKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDIQYLPDDILKILLLFLDPEDLDLLIEALNKLELEENVS 171 (256)
T ss_pred HHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccchhhhcccceEEEEECCHHHHHHHHHHhhhhhhcCCEE
Confidence 000 000 0 0 00 00000011111211 222333332221 1110
Q ss_pred hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78 464 IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 464 ~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~ 521 (523)
.......+.++.|. +|+.+++.++++ .+++++|||+.||++|++.||+|+||+||.++
T Consensus 172 ~~~s~~~~leI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~ 235 (256)
T TIGR00099 172 VVSSGPYSIEITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEE 235 (256)
T ss_pred EEEecCceEEecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHH
Confidence 11112235566665 799999999986 36899999999999999999999999998765
No 52
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.49 E-value=1.2e-13 Score=131.63 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=98.5
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCc-e-----EEEecCcchhhh
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK-V-----YFTVSGVSAIQT 420 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~-~-----~~~~~~~~~~~~ 420 (523)
..+.++++|++|+++|++++++|||+...+..+.++++++ ..++++.||+.+.+..... . .....+......
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~--~~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT--GDPYIAENGAAIHLEELWREEPGYPRIILGISYGIIRL 94 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--CCcEEEeCCcEEEcCcccccCCCceEEecCCCHHHHHH
Confidence 4555999999999999999999999999999999999985 2579999999876543222 1 111112111111
Q ss_pred hhh------hcccCch----h---h----------hhc-cCCCceEEEE--ecccHHHHHhhCcchHhhhhcccEEEEcC
Q psy78 421 KAK------KLNYSKT----E---E----------ELG-LSSGAYKFAV--TGKSWELIRDQMPELIPRIIVKGAIFARM 474 (523)
Q Consensus 421 ~~~------~~~~~~~----~---~----------~~~-~~~~~~~l~i--~~~~~~~l~~~~~~~~~~~~~~~~v~~~~ 474 (523)
... ....... . . ... .......+.. +.+..+.+.+.....-..... ...+.++
T Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ei 173 (221)
T TIGR02463 95 VLETLSEELHFKFTPFDDLSDAEIAELTGLSGSQAALAQDREASVPLLWRDSDSRMPRFTALLADLGLAIVQ-GNRFSHV 173 (221)
T ss_pred HHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCccEEecCchhHHHHHHHHHHHcCCeEEe-cCCeeEE
Confidence 000 0000000 0 0 000 0011112222 222233222211110000111 1234566
Q ss_pred ChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEe
Q psy78 475 SSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISL 515 (523)
Q Consensus 475 ~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAM 515 (523)
.|. +|+.+++.++++ .++|++|||+.||++||+.||+|||+
T Consensus 174 ~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 174 LGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred ecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 665 799999999886 57899999999999999999999996
No 53
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.46 E-value=2.1e-13 Score=129.77 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=100.3
Q ss_pred eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCC-------------
Q psy78 339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKEC------------- 405 (523)
Q Consensus 339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~------------- 405 (523)
|++.-.+...++++++|++|+++|++++++|||++..+..+++++|+. .++++.||+.+.....
T Consensus 8 GTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~---~~~I~~NGa~I~~~~~~~~~~~~~~~~~~ 84 (225)
T TIGR02461 8 GTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE---PPFIVENGGAIFIPRGYFPFPVGAGREVG 84 (225)
T ss_pred CCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC---CcEEEcCCcEEEecCccccccccccccCC
Confidence 333334567778999999999999999999999999999999999985 3689999988765332
Q ss_pred CceEEE-ecCcchhhhh---hhh-cccCc---h-hh---------------hhccCCCceEEEEecccHHHHHhhCcchH
Q psy78 406 PKVYFT-VSGVSAIQTK---AKK-LNYSK---T-EE---------------ELGLSSGAYKFAVTGKSWELIRDQMPELI 461 (523)
Q Consensus 406 ~~~~~~-~~~~~~~~~~---~~~-~~~~~---~-~~---------------~~~~~~~~~~l~i~~~~~~~l~~~~~~~~ 461 (523)
....+. .......... ... ..... . .. .......+..+..+.+.+..+.+..+...
T Consensus 85 ~~~i~~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~e~~~~~~~~~~~~~ 164 (225)
T TIGR02461 85 NYEVIELGKPVAKIRAALKEAENEYGLKYYGNSTAEEVEKLTGLPRELAPLAKRREYSETIFLWSREGWEAILVTARARG 164 (225)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHhcCccchhcCCHHHHHHHHCcCHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcC
Confidence 222222 2222111111 100 00000 0 00 00000001111112222333222221100
Q ss_pred hhhhcccEEEEcCC-hHhHHHHHHHHHHC------CCEEEEEcCChhhHHHHHhCCccEEec
Q psy78 462 PRIIVKGAIFARMS-SDQKQQLVLELQQL------GYYVAMCGDGANDCGALRAAHAGISLS 516 (523)
Q Consensus 462 ~~~~~~~~v~~~~~-p~~K~~~i~~L~~~------~~~V~a~GDG~ND~~MLk~A~vGIAMg 516 (523)
......... ..+. ..+|+.+++.+.+. ..++++|||+.||++||+.||+||+.|
T Consensus 165 ~~~~~s~~~-~~i~~~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v~ 225 (225)
T TIGR02461 165 LKYTHGGRF-YTVHGGSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLVG 225 (225)
T ss_pred CcEEECCEE-EEECCCCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEecC
Confidence 011111222 2233 34899999999875 236999999999999999999999986
No 54
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.44 E-value=5.4e-13 Score=109.83 Aligned_cols=100 Identities=31% Similarity=0.396 Sum_probs=91.4
Q ss_pred ceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecC
Q psy78 335 LEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSG 414 (523)
Q Consensus 335 l~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~ 414 (523)
+.+.++++--.++-+++.++|++|++. ++++++|||...+....|+..|++..
T Consensus 19 ~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~-------------------------- 71 (152)
T COG4087 19 GKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVE-------------------------- 71 (152)
T ss_pred ceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCcee--------------------------
Confidence 567788888889999999999999999 99999999999999999999998520
Q ss_pred cchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEE
Q psy78 415 VSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVA 494 (523)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~ 494 (523)
.+++...|+.|..+++.|++..+.++
T Consensus 72 ------------------------------------------------------rv~a~a~~e~K~~ii~eLkk~~~k~v 97 (152)
T COG4087 72 ------------------------------------------------------RVFAGADPEMKAKIIRELKKRYEKVV 97 (152)
T ss_pred ------------------------------------------------------eeecccCHHHHHHHHHHhcCCCcEEE
Confidence 47888899999999999999999999
Q ss_pred EEcCChhhHHHHHhCCccEEe
Q psy78 495 MCGDGANDCGALRAAHAGISL 515 (523)
Q Consensus 495 a~GDG~ND~~MLk~A~vGIAM 515 (523)
|+|||.||..||+.||+||..
T Consensus 98 mVGnGaND~laLr~ADlGI~t 118 (152)
T COG4087 98 MVGNGANDILALREADLGICT 118 (152)
T ss_pred EecCCcchHHHhhhcccceEE
Confidence 999999999999999999854
No 55
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.43 E-value=1.6e-13 Score=133.15 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=103.4
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC--ceEEE-----ecCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP--KVYFT-----VSGVS 416 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~--~~~~~-----~~~~~ 416 (523)
..+..|++.+++++++++|+.++++|||+..++..+.+++++..+. .+++.||+.+...... ...+. .....
T Consensus 19 ~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~-~~I~~NGa~I~~~~~~~~~~~~~~~~~~~~~~~ 97 (249)
T TIGR01485 19 DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPD-IWVTSVGSEIYYGGAEVPDQHWAEYLSEKWQRD 97 (249)
T ss_pred ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCC-EEEEcCCceEEeCCCCcCCHHHHHHHhcccCHH
Confidence 4557899999999999999999999999999999999999986543 6788888876542210 00000 00000
Q ss_pred hhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhh------hcccEEEEcCChH--hHHHHHHHHHH
Q psy78 417 AIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRI------IVKGAIFARMSSD--QKQQLVLELQQ 488 (523)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~------~~~~~v~~~~~p~--~K~~~i~~L~~ 488 (523)
.+.....................+..+....+......+...+.+... ......+.++.|. +|+.+++.+++
T Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~ 177 (249)
T TIGR01485 98 IVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQ 177 (249)
T ss_pred HHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHH
Confidence 000000000000000000011122222322222111111111111110 0111123355553 89999999988
Q ss_pred C----CCEEEEEcCChhhHHHHHh-CCccEEecccCCCC
Q psy78 489 L----GYYVAMCGDGANDCGALRA-AHAGISLSEAESPI 522 (523)
Q Consensus 489 ~----~~~V~a~GDG~ND~~MLk~-A~vGIAMgna~~~v 522 (523)
+ .+++++|||+.||++|++. ++.||||+||.+++
T Consensus 178 ~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~ 216 (249)
T TIGR01485 178 KLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEEL 216 (249)
T ss_pred HcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHH
Confidence 5 4789999999999999998 67999999998764
No 56
>PTZ00174 phosphomannomutase; Provisional
Probab=99.41 E-value=3.5e-13 Score=130.38 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=96.6
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec----Ccchhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS----GVSAIQT 420 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~----~~~~~~~ 420 (523)
.++.+.++++|++++++|++++++|||++..+....+.... ....++++.||+.+.. ....+..... +......
T Consensus 21 ~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~~~~-~~~~~~I~~NGa~I~~-~~~~i~~~~i~~~l~~~~~~~ 98 (247)
T PTZ00174 21 NPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGEDVL-EDFDYVFSENGLVAYK-DGELFHSQSILKFLGEEKLKK 98 (247)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhhhh-cccCeEEeCCceEEEE-CCeEEEEEcchhcCCHHHHHH
Confidence 35999999999999999999999999999977554432221 1124678999988764 2233322221 1111111
Q ss_pred hhhh-------cccCchhhhhccCCCceEEEE------------------e--cccHHHHHhhCcchHhhh--hcc--cE
Q psy78 421 KAKK-------LNYSKTEEELGLSSGAYKFAV------------------T--GKSWELIRDQMPELIPRI--IVK--GA 469 (523)
Q Consensus 421 ~~~~-------~~~~~~~~~~~~~~~~~~l~i------------------~--~~~~~~l~~~~~~~~~~~--~~~--~~ 469 (523)
.... ....... ............. . .+..+.+.+.+...+... ... ..
T Consensus 99 i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~ 177 (247)
T PTZ00174 99 FINFCLRYIADLDIPVKR-GTFIEYRNGMINISPIGRNCSQEERDEFEKYDKEHHIREKFIQDLKKEFSDLGLKFSIGGQ 177 (247)
T ss_pred HHHHHHHHHHhcCCccce-eeeEEcCCceEEeccccccCCHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCCeEEEecCc
Confidence 1100 0000000 0000000000000 0 011111111111111110 011 12
Q ss_pred EEEcCChH--hHHHHHHHHHHCCCEEEEEcC----ChhhHHHHHhC-CccEEecccCCCC
Q psy78 470 IFARMSSD--QKQQLVLELQQLGYYVAMCGD----GANDCGALRAA-HAGISLSEAESPI 522 (523)
Q Consensus 470 v~~~~~p~--~K~~~i~~L~~~~~~V~a~GD----G~ND~~MLk~A-~vGIAMgna~~~v 522 (523)
.+.++.|. +|+.+++.|+++.++|+|||| |.||++||+.| -.|++.+||++.|
T Consensus 178 ~~leI~~~gvsKg~al~~L~~~~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n~~~~~ 237 (247)
T PTZ00174 178 ISFDVFPKGWDKTYCLRHLENDFKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKNPEDTI 237 (247)
T ss_pred eEEEeeeCCCcHHHHHHHHHhhhhhEEEEcccCCCCCCcHhhhhcCCCceEEeCCHHHHH
Confidence 35577775 899999999999999999999 99999999976 4666667988753
No 57
>PLN02382 probable sucrose-phosphatase
Probab=99.41 E-value=3.9e-13 Score=138.77 Aligned_cols=176 Identities=17% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCCcchHHHH-HHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC--ceEEE-----ecCcch
Q psy78 346 RLKPQTEGVI-KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP--KVYFT-----VSGVSA 417 (523)
Q Consensus 346 ~lr~~t~~aI-~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~--~~~~~-----~~~~~~ 417 (523)
.+.+...+++ ++++++|+.++++|||++..+..+.+++++..++ .+++.||..+...... ...+. ......
T Consensus 28 ~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~-~~I~~nGt~I~~~~~~~~d~~w~~~l~~~w~~~~ 106 (413)
T PLN02382 28 NLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPD-ITIMSVGTEIAYGESMVPDHGWVEYLNKKWDREI 106 (413)
T ss_pred chhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCC-EEEEcCCcEEEeCCCCccChhHHHHHhccCChhh
Confidence 4555666777 8899999999999999999999999999987654 5677788765321110 00000 001000
Q ss_pred hhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhh------hhcccEEEEcCChH--hHHHHHHHHHHC
Q psy78 418 IQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPR------IIVKGAIFARMSSD--QKQQLVLELQQL 489 (523)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~------~~~~~~v~~~~~p~--~K~~~i~~L~~~ 489 (523)
+......+..............+..+....+....+.+.+.+.+.. .......+.++.|. +|+.+++.|+++
T Consensus 107 v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~ldI~p~g~sKg~Al~~L~~~ 186 (413)
T PLN02382 107 VVEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDLDVLPQGAGKGQALAYLLKK 186 (413)
T ss_pred HHHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEEEEEeCCCCHHHHHHHHHHH
Confidence 0000000100000000001112223333333333333222222211 11111235567775 799999999886
Q ss_pred -------CCEEEEEcCChhhHHHHHhCC-ccEEecccCCCC
Q psy78 490 -------GYYVAMCGDGANDCGALRAAH-AGISLSEAESPI 522 (523)
Q Consensus 490 -------~~~V~a~GDG~ND~~MLk~A~-vGIAMgna~~~v 522 (523)
.+++++|||+.||++||+.|| .|||||||.+++
T Consensus 187 ~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~el 227 (413)
T PLN02382 187 LKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEEL 227 (413)
T ss_pred hhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHH
Confidence 358999999999999999999 799999998764
No 58
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=99.37 E-value=2.1e-12 Score=136.95 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=99.7
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCC-------------CceEEE-
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKEC-------------PKVYFT- 411 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~-------------~~~~~~- 411 (523)
.+.+.++++|++|+++|+.++++|||+...+..+++++++. .++++.||+.+..... ......
T Consensus 433 ~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~---~~~I~eNGA~I~~~~~~~~~~~~~~~~~~~~iI~~~ 509 (694)
T PRK14502 433 YSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK---DPFITENGGAIFIPKDYFRLPFAYDRVAGNYLVIEL 509 (694)
T ss_pred ccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC---CeEEEcCCCEEEECCCcccccccccccCCCeEEEEc
Confidence 36678999999999999999999999999999999999974 4688888876654322 112221
Q ss_pred ecCcchhhhhhh---h-cc-------------c---Cch--------------hhhhcc-CCCceEEEEec--ccHHHHH
Q psy78 412 VSGVSAIQTKAK---K-LN-------------Y---SKT--------------EEELGL-SSGAYKFAVTG--KSWELIR 454 (523)
Q Consensus 412 ~~~~~~~~~~~~---~-~~-------------~---~~~--------------~~~~~~-~~~~~~l~i~~--~~~~~l~ 454 (523)
..+...+..... . .. . ... ...... ......+...+ +.++.+.
T Consensus 510 ~l~~e~i~~IL~~lke~l~~~i~ihv~~~~~~i~~~~d~~~~ei~~~TgL~~~~a~~a~~Re~seKIl~~gd~e~Leel~ 589 (694)
T PRK14502 510 GMAYKDIRHILKKALAEACTEIENSEKAGNIFITSFGDMSVEDVSRLTDLNLKQAELAKQREYSETVHIEGDKRSTNIVL 589 (694)
T ss_pred CCCHHHHHHHHHHHHHhhcceeeeeeccCcEEEecCCcccHHHHHHhhCCCHHHHHHHhhccCceeEEEcCCHHHHHHHH
Confidence 111111110000 0 00 0 000 000000 01111222222 2233332
Q ss_pred hhCcchHhhhhcccEEEEcCC-hHhHHHHHHHHHHC----CCEEEEE--cCChhhHHHHHhCCccEEecccCC
Q psy78 455 DQMPELIPRIIVKGAIFARMS-SDQKQQLVLELQQL----GYYVAMC--GDGANDCGALRAAHAGISLSEAES 520 (523)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~~~~-p~~K~~~i~~L~~~----~~~V~a~--GDG~ND~~MLk~A~vGIAMgna~~ 520 (523)
+.....-..... ...+.++. ..+|+.+++.|++. .+++++| |||.||++||+.||+||||++-..
T Consensus 590 ~~L~~~~l~v~~-g~rfleI~~gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~~~ 661 (694)
T PRK14502 590 NHIQQSGLEYSF-GGRFYEVTGGNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRPGN 661 (694)
T ss_pred HHHHHcCcEEEE-CCEEEEeCCCCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCCCC
Confidence 222111001111 22344444 34899999999986 3567888 999999999999999999987654
No 59
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.34 E-value=8.9e-13 Score=126.84 Aligned_cols=171 Identities=12% Similarity=0.122 Sum_probs=95.7
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC--ceEEEec-----Ccchhh
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP--KVYFTVS-----GVSAIQ 419 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~--~~~~~~~-----~~~~~~ 419 (523)
+.+-+ ++++ ++++|++++++|||+...+..+.+++++..+ +.++..||+.+...... ...+... ......
T Consensus 17 ~~~~~-~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~-~~~I~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (236)
T TIGR02471 17 LASFV-ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSP-DVLIARVGTEIYYGPELQPDRFWQKHIDHDWRRQAVV 93 (236)
T ss_pred HHHHH-HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCC-CEEEECCCceEEeCCCCCCChhHHHHHhcCCCHHHHH
Confidence 44444 6666 7999999999999999999999999998643 37899999875322110 0000000 000000
Q ss_pred hhhhhcccCchhhhhccCC--CceEEEEeccc---HHHHHhhCcchHh--hhhcccEEEEcCChH--hHHHHHHHHHHC-
Q psy78 420 TKAKKLNYSKTEEELGLSS--GAYKFAVTGKS---WELIRDQMPELIP--RIIVKGAIFARMSSD--QKQQLVLELQQL- 489 (523)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~---~~~l~~~~~~~~~--~~~~~~~v~~~~~p~--~K~~~i~~L~~~- 489 (523)
.....+. ....+..... .+..+...++. ...+.+....... ........+.++.|. +|+.+++.+.++
T Consensus 94 ~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~ 171 (236)
T TIGR02471 94 EALADIP--GLTLQDDQEQGPFKISYLLDPEGEPILPQIRQRLRQQSQAAKVILSCGWFLDVLPLRASKGLALRYLSYRW 171 (236)
T ss_pred HHHhcCC--CcEeCChhcCCCeeEEEEECcccchHHHHHHHHHHhccCCEEEEEECCceEEEeeCCCChHHHHHHHHHHh
Confidence 0000000 0000001111 12233333321 1222211111000 000011112355555 899999999886
Q ss_pred ---CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78 490 ---GYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 490 ---~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v 522 (523)
.+++++|||+.||++||+.||+||||+||.+++
T Consensus 172 g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~ 207 (236)
T TIGR02471 172 GLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPEL 207 (236)
T ss_pred CCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHH
Confidence 347999999999999999999999999998764
No 60
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.30 E-value=6.8e-12 Score=122.48 Aligned_cols=168 Identities=11% Similarity=0.109 Sum_probs=98.4
Q ss_pred CCCcchHHHHHHHHh-CCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcch---hhhh
Q psy78 346 RLKPQTEGVIKELKD-ARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA---IQTK 421 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~-~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~---~~~~ 421 (523)
.+.++++++|++|++ .|+.++++|||+...+..+.+.+++ .++..||....+.... ........+. +...
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~-----~~i~~nGa~i~~~~~~-~~~~~l~~~~~~~i~~~ 109 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRF-----PLAGVHGAERRDINGK-THIVHLPDAIARDISVQ 109 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccc-----eEEEeCCCeeecCCCC-eeeccCChhHHHHHHHH
Confidence 578999999999998 7999999999999999888776653 4778888876543322 1111111111 1111
Q ss_pred hhhcccCchhhhhccCCCceEEEEec----cc---HHHHHhhCcchHh-hhhcccEEEEcCChH--hHHHHHHHHHHC--
Q psy78 422 AKKLNYSKTEEELGLSSGAYKFAVTG----KS---WELIRDQMPELIP-RIIVKGAIFARMSSD--QKQQLVLELQQL-- 489 (523)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~l~i~~----~~---~~~l~~~~~~~~~-~~~~~~~v~~~~~p~--~K~~~i~~L~~~-- 489 (523)
.......... ...+.....+.... +. ...+.+...+.+. ..+.....+.++.|. +|+.+++.+.++
T Consensus 110 l~~~~~~~pg--~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~~Kg~al~~ll~~~~ 187 (266)
T PRK10187 110 LHTALAQLPG--AELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGTNKGEAIAAFMQEAP 187 (266)
T ss_pred HHHHhccCCC--cEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCCCHHHHHHHHHHhcC
Confidence 1110000000 00011111111111 11 1111111111111 011122345566665 899999999886
Q ss_pred --CCEEEEEcCChhhHHHHHhC----CccEEecccCCC
Q psy78 490 --GYYVAMCGDGANDCGALRAA----HAGISLSEAESP 521 (523)
Q Consensus 490 --~~~V~a~GDG~ND~~MLk~A----~vGIAMgna~~~ 521 (523)
.+.+++|||+.||.+||+.+ |+||+|||+.+.
T Consensus 188 ~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~~~ 225 (266)
T PRK10187 188 FAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGATQ 225 (266)
T ss_pred CCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCCCc
Confidence 46899999999999999999 999999999764
No 61
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.13 E-value=2.8e-10 Score=106.79 Aligned_cols=108 Identities=27% Similarity=0.278 Sum_probs=82.4
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.+++|++.+.++.++++|++++++||-+..-+.++++.+|++..-...+.....
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG-------------------------- 129 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDG-------------------------- 129 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCC--------------------------
Confidence 789999999999999999999999999999999999999997432221111100
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGA 500 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ 500 (523)
..+|. ...-.+..+.|...++.+.+. .+.++|+|||.
T Consensus 130 -------------------~ltG~--------------------v~g~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~ 170 (212)
T COG0560 130 -------------------KLTGR--------------------VVGPICDGEGKAKALRELAAELGIPLEETVAYGDSA 170 (212)
T ss_pred -------------------EEece--------------------eeeeecCcchHHHHHHHHHHHcCCCHHHeEEEcCch
Confidence 01111 122234457899999777764 35799999999
Q ss_pred hhHHHHHhCCccEEecc
Q psy78 501 NDCGALRAAHAGISLSE 517 (523)
Q Consensus 501 ND~~MLk~A~vGIAMgn 517 (523)
||+|||+.||.+||..-
T Consensus 171 nDlpml~~ag~~ia~n~ 187 (212)
T COG0560 171 NDLPMLEAAGLPIAVNP 187 (212)
T ss_pred hhHHHHHhCCCCeEeCc
Confidence 99999999999999864
No 62
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.12 E-value=2.1e-10 Score=107.69 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=91.9
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cC-cchhhhhhh
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SG-VSAIQTKAK 423 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 423 (523)
++.+++.++|++|+++|++++++|||+...+..+.++++ ..++..||+....... ..+.. .+ ...+.....
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~-----~~~i~~nGa~i~~~~~--~~~~~~~~~~~~~~~~~~ 89 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP-----LPLIAENGALIFYPGE--ILYIEPSDVFEEILGIKE 89 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC-----CCEEECCCcEEEECCE--EEEEcccccHHHHHHhhh
Confidence 588999999999999999999999999999999988742 4588888877653221 12221 00 011110000
Q ss_pred hcccC----c---hhhhhccCCCceEEEEecc----c-HHHHHhhCcchH---h--hhhcccEEEEcCChH--hHHHHHH
Q psy78 424 KLNYS----K---TEEELGLSSGAYKFAVTGK----S-WELIRDQMPELI---P--RIIVKGAIFARMSSD--QKQQLVL 484 (523)
Q Consensus 424 ~~~~~----~---~~~~~~~~~~~~~l~i~~~----~-~~~l~~~~~~~~---~--~~~~~~~v~~~~~p~--~K~~~i~ 484 (523)
.+... . .............+...+. . ...+.+...... . .+......+.++.|. +|+.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ev~p~~~~K~~~~~ 169 (204)
T TIGR01484 90 EIGAELKSLSEHYVGTFIEDKAIAVAIHYVGAELGQELDSKMRERLEKIGRNDLELEAIYVGKTDLEVLPAGVDKGSALQ 169 (204)
T ss_pred hcCceeeeeccccccceeecccceeeEEEeccchhhHHHHHHHHHHHhhccccCcEEEEEecCCEEEEecCCCChHHHHH
Confidence 00000 0 0000000011111111111 0 111111100000 0 011012234455664 8999999
Q ss_pred HHHHC----CCEEEEEcCChhhHHHHHhCCccEEe
Q psy78 485 ELQQL----GYYVAMCGDGANDCGALRAAHAGISL 515 (523)
Q Consensus 485 ~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAM 515 (523)
.+.++ .+.++++||+.||.+|++.+|+||||
T Consensus 170 ~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 170 ALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred HHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 99876 36799999999999999999999998
No 63
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.12 E-value=1.7e-10 Score=115.07 Aligned_cols=111 Identities=23% Similarity=0.229 Sum_probs=81.2
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
-++.|++++.|+.|++.|+++.++||.....+..+.+++|++. ++. |.....+
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~----~~a-n~lei~d---------------------- 232 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA----AVA-NELEIMD---------------------- 232 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe----EEE-eEEEEEC----------------------
Confidence 4689999999999999999999999999888889999999852 111 1000000
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEE-EcCChHhHHHHHHHHHHC----CCEEEEEcCC
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIF-ARMSSDQKQQLVLELQQL----GYYVAMCGDG 499 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~p~~K~~~i~~L~~~----~~~V~a~GDG 499 (523)
. .+++ .+. .-+..+.|...++.++++ .++++|||||
T Consensus 233 --------------g----~ltg---------------------~v~g~iv~~k~K~~~L~~la~~lgi~~~qtIaVGDg 273 (322)
T PRK11133 233 --------------G----KLTG---------------------NVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDG 273 (322)
T ss_pred --------------C----EEEe---------------------EecCccCCcccHHHHHHHHHHHcCCChhhEEEEECC
Confidence 0 0000 000 012346799999988875 4789999999
Q ss_pred hhhHHHHHhCCccEEecccCCCC
Q psy78 500 ANDCGALRAAHAGISLSEAESPI 522 (523)
Q Consensus 500 ~ND~~MLk~A~vGIAMgna~~~v 522 (523)
.||++|++.||+|||| ||.+.|
T Consensus 274 ~NDl~m~~~AGlgiA~-nAkp~V 295 (322)
T PRK11133 274 ANDLPMIKAAGLGIAY-HAKPKV 295 (322)
T ss_pred HHHHHHHHHCCCeEEe-CCCHHH
Confidence 9999999999999999 887654
No 64
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.07 E-value=8.8e-10 Score=106.01 Aligned_cols=56 Identities=5% Similarity=-0.008 Sum_probs=49.3
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCC
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGL 402 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~ 402 (523)
++...+.++++|++|+++|+.++++|||+...+..+.+++++. .++|+.||+.+..
T Consensus 16 ~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~---~p~I~eNGA~I~~ 71 (302)
T PRK12702 16 EFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE---HPFICEDGSAIYV 71 (302)
T ss_pred CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC---CeEEEeCCcEEEE
Confidence 3457788999999999999999999999999999999999985 3789999987653
No 65
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.02 E-value=2e-09 Score=100.62 Aligned_cols=103 Identities=22% Similarity=0.239 Sum_probs=79.2
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCe-EEEee-cCCCCCCCCCceEEEecCcchhhhhhh
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGET-VVDVS-AVPGGLKECPKVYFTVSGVSAIQTKAK 423 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~-~i~~n-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (523)
++.|++++.|+.+|+.| +++++||-....+.++++++|++..-+. ....+ |
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g-------------------------- 120 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSD-------------------------- 120 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCC--------------------------
Confidence 68999999999999985 9999999999999999999999631100 00000 0
Q ss_pred hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhH
Q psy78 424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDC 503 (523)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~ 503 (523)
.++|. . ...+..|...++.+++.+..++++|||.||+
T Consensus 121 --------------------~~tG~---------------------~--~~~~~~K~~~l~~l~~~~~~~v~vGDs~nDl 157 (203)
T TIGR02137 121 --------------------RVVGY---------------------Q--LRQKDPKRQSVIAFKSLYYRVIAAGDSYNDT 157 (203)
T ss_pred --------------------eeECe---------------------e--ecCcchHHHHHHHHHhhCCCEEEEeCCHHHH
Confidence 00010 0 1245689999999988787899999999999
Q ss_pred HHHHhCCccEEeccc
Q psy78 504 GALRAAHAGISLSEA 518 (523)
Q Consensus 504 ~MLk~A~vGIAMgna 518 (523)
+|++.||+||||.-.
T Consensus 158 ~ml~~Ag~~ia~~ak 172 (203)
T TIGR02137 158 TMLSEAHAGILFHAP 172 (203)
T ss_pred HHHHhCCCCEEecCC
Confidence 999999999999753
No 66
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.99 E-value=8.8e-10 Score=99.42 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=68.2
Q ss_pred HHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchh
Q psy78 352 EGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTE 431 (523)
Q Consensus 352 ~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (523)
-.+|+.|+++|+++.|+|+.+...+...++.+|+..
T Consensus 40 ~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~-------------------------------------------- 75 (169)
T TIGR02726 40 GMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKR-------------------------------------------- 75 (169)
T ss_pred HHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcE--------------------------------------------
Confidence 468999999999999999999999999999999841
Q ss_pred hhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCC--hHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhC
Q psy78 432 EELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMS--SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAA 509 (523)
Q Consensus 432 ~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A 509 (523)
++.... |+.-..+++.+.-..+++++|||+.||++|++.|
T Consensus 76 --------------------------------------~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~a 117 (169)
T TIGR02726 76 --------------------------------------FHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRV 117 (169)
T ss_pred --------------------------------------EEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHC
Confidence 111111 2222233333332357899999999999999999
Q ss_pred CccEEecccCCCC
Q psy78 510 HAGISLSEAESPI 522 (523)
Q Consensus 510 ~vGIAMgna~~~v 522 (523)
|+++||+||.+++
T Consensus 118 g~~~am~nA~~~l 130 (169)
T TIGR02726 118 GLAVAVGDAVADV 130 (169)
T ss_pred CCeEECcCchHHH
Confidence 9999999997653
No 67
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.94 E-value=2.3e-09 Score=95.83 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=67.2
Q ss_pred HHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhh
Q psy78 354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE 433 (523)
Q Consensus 354 aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (523)
+|++|+++|+++.|+||++...+..+++.+|+..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~---------------------------------------------- 69 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH---------------------------------------------- 69 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE----------------------------------------------
Confidence 8999999999999999999999999999999851
Q ss_pred hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC
Q psy78 434 LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA 509 (523)
Q Consensus 434 ~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A 509 (523)
.+.. ...|...++.+.++ .+.++++||+.||++|++.|
T Consensus 70 ------------------------------------~~~~--~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~a 111 (154)
T TIGR01670 70 ------------------------------------LYQG--QSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKV 111 (154)
T ss_pred ------------------------------------EEec--ccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHC
Confidence 0110 12345555555442 56899999999999999999
Q ss_pred CccEEecccCCC
Q psy78 510 HAGISLSEAESP 521 (523)
Q Consensus 510 ~vGIAMgna~~~ 521 (523)
|++++|.++.+.
T Consensus 112 g~~~~v~~~~~~ 123 (154)
T TIGR01670 112 GLSVAVADAHPL 123 (154)
T ss_pred CCeEecCCcCHH
Confidence 999999998653
No 68
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.87 E-value=1.1e-09 Score=105.81 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=89.9
Q ss_pred HHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCce--EEE-----ecCcchhhhhhhhcccCch
Q psy78 358 LKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV--YFT-----VSGVSAIQTKAKKLNYSKT 430 (523)
Q Consensus 358 Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~ 430 (523)
..+.++.++++|||+...+..+.++.++.. .+.+++.+|..+........ .|. ..+...+.+....+..-..
T Consensus 31 ~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~-Pd~~I~svGt~I~~~~~~~~d~~w~~~i~~~w~~~~v~~~l~~~~~l~~ 109 (247)
T PF05116_consen 31 QARPEILFVYVTGRSLESVLRLLREYNLPQ-PDYIITSVGTEIYYGENWQPDEEWQAHIDERWDRERVEEILAELPGLRP 109 (247)
T ss_dssp HHCCGEEEEEE-SS-HHHHHHHHHHCT-EE--SEEEETTTTEEEESSTTEE-HHHHHHHHTT--HHHHHHHHHCHCCEEE
T ss_pred hhCCCceEEEECCCCHHHHHHHHHhCCCCC-CCEEEecCCeEEEEcCCCcChHHHHHHHHhcCChHHHHHHHHHhhCccc
Confidence 447789999999999999999999999854 46788888876544110000 000 0011111111111100001
Q ss_pred hhhhccCCCceEEEEecccHHHHHhhCcchHhh------hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcC
Q psy78 431 EEELGLSSGAYKFAVTGKSWELIRDQMPELIPR------IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGD 498 (523)
Q Consensus 431 ~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~------~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GD 498 (523)
.........+..+.+..+......+.+...+.. +..+.....++.|. +|+.+++.|+++ .+.|+++||
T Consensus 110 q~~~~q~~~k~sy~~~~~~~~~~~~~i~~~l~~~~l~~~~i~s~~~~ldilP~~a~K~~Al~~L~~~~~~~~~~vl~aGD 189 (247)
T PF05116_consen 110 QPESEQRPFKISYYVDPDDSADILEEIRARLRQRGLRVNVIYSNGRDLDILPKGASKGAALRYLMERWGIPPEQVLVAGD 189 (247)
T ss_dssp GGCCCGCCTCECEEEETTSHCHHHHHHHHHHHCCTCEEEEEECTCCEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEES
T ss_pred CCccccCCeeEEEEEecccchhHHHHHHHHHHHcCCCeeEEEccceeEEEccCCCCHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 111112233455566654443322221111111 11111224455564 899999999997 467999999
Q ss_pred ChhhHHHHHhCCccEEecccCCC
Q psy78 499 GANDCGALRAAHAGISLSEAESP 521 (523)
Q Consensus 499 G~ND~~MLk~A~vGIAMgna~~~ 521 (523)
+.||.+||..++.||.+|||.++
T Consensus 190 SgND~~mL~~~~~~vvV~Na~~e 212 (247)
T PF05116_consen 190 SGNDLEMLEGGDHGVVVGNAQPE 212 (247)
T ss_dssp SGGGHHHHCCSSEEEE-TTS-HH
T ss_pred CCCcHHHHcCcCCEEEEcCCCHH
Confidence 99999999999999999999875
No 69
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.80 E-value=1.1e-08 Score=94.32 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=67.7
Q ss_pred HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78 353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE 432 (523)
Q Consensus 353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (523)
.+++.|+++|+++.++||++...+..+++++|+..
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~--------------------------------------------- 89 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITH--------------------------------------------- 89 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCce---------------------------------------------
Confidence 79999999999999999999999999999999841
Q ss_pred hhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHh
Q psy78 433 ELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRA 508 (523)
Q Consensus 433 ~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~ 508 (523)
++. ...+|...++.+.+. .++++++||+.||++|++.
T Consensus 90 -------------------------------------~f~--g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~ 130 (183)
T PRK09484 90 -------------------------------------LYQ--GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEK 130 (183)
T ss_pred -------------------------------------eec--CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHH
Confidence 111 113455666655543 4689999999999999999
Q ss_pred CCccEEecccCC
Q psy78 509 AHAGISLSEAES 520 (523)
Q Consensus 509 A~vGIAMgna~~ 520 (523)
||++++++++.+
T Consensus 131 aG~~~~v~~~~~ 142 (183)
T PRK09484 131 VGLSVAVADAHP 142 (183)
T ss_pred CCCeEecCChhH
Confidence 999999987643
No 70
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.71 E-value=6.4e-08 Score=90.44 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL 425 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (523)
++.|++.+.|+.|+++|++++++||.....+..+++.+|+...-+..+...... .
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g--------~----------------- 134 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKG--------F----------------- 134 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCC--------e-----------------
Confidence 689999999999999999999999999999999999999752100111000000 0
Q ss_pred ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChh
Q psy78 426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGAN 501 (523)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~N 501 (523)
..+ ..+....+..|..+++.+.+. .++++++||+.|
T Consensus 135 -------------------~~p---------------------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~ 174 (201)
T TIGR01491 135 -------------------IQP---------------------DGIVRVTFDNKGEAVERLKRELNPSLTETVAVGDSKN 174 (201)
T ss_pred -------------------Eec---------------------ceeeEEccccHHHHHHHHHHHhCCCHHHEEEEcCCHh
Confidence 000 011123355677777776553 467999999999
Q ss_pred hHHHHHhCCccEEeccc
Q psy78 502 DCGALRAAHAGISLSEA 518 (523)
Q Consensus 502 D~~MLk~A~vGIAMgna 518 (523)
|++|++.||+++|++..
T Consensus 175 D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 175 DLPMFEVADISISLGDE 191 (201)
T ss_pred HHHHHHhcCCeEEECCC
Confidence 99999999999999753
No 71
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.69 E-value=1.3e-07 Score=105.48 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=92.0
Q ss_pred CCCcchHHHHHHHHh-CCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 346 RLKPQTEGVIKELKD-ARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~-~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.+.+++.++|++|.+ .|+.|+++|||+..........+++ .++..||........ .+................
T Consensus 514 ~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l-----~liaenG~~i~~~~~-~w~~~~~~~~~w~~~v~~ 587 (726)
T PRK14501 514 VPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPI-----HLVAEHGAWSRAPGG-EWQLLEPVATEWKDAVRP 587 (726)
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCe-----EEEEeCCEEEeCCCC-ceEECCCcchhHHHHHHH
Confidence 478999999999999 5999999999999988776654432 477777765542211 111100000000000000
Q ss_pred cccCchhh--hhccCCCceEEEEe--c--ccHHHH-HhhCcchHhhhhc-------ccEEEEcCChH--hHHHHHHHHHH
Q psy78 425 LNYSKTEE--ELGLSSGAYKFAVT--G--KSWELI-RDQMPELIPRIIV-------KGAIFARMSSD--QKQQLVLELQQ 488 (523)
Q Consensus 425 ~~~~~~~~--~~~~~~~~~~l~i~--~--~~~~~l-~~~~~~~~~~~~~-------~~~v~~~~~p~--~K~~~i~~L~~ 488 (523)
+....... ..........+... . .++... .+.....+..... ......++.|. +|+.+++.+.+
T Consensus 588 il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~~~v~~g~~~veV~p~~vnKG~al~~ll~ 667 (726)
T PRK14501 588 ILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAPLEVLRGNKVVEVRPAGVNKGRAVRRLLE 667 (726)
T ss_pred HHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEECCeEEEEEECCCCHHHHHHHHHh
Confidence 00000000 00001111112111 1 111110 0001111111111 11234455564 89999999998
Q ss_pred C--CCEEEEEcCChhhHHHHHhC---CccEEecccCCC
Q psy78 489 L--GYYVAMCGDGANDCGALRAA---HAGISLSEAESP 521 (523)
Q Consensus 489 ~--~~~V~a~GDG~ND~~MLk~A---~vGIAMgna~~~ 521 (523)
. .+.+++|||+.||.+||+.+ +++|+|||+.+.
T Consensus 668 ~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~~s~ 705 (726)
T PRK14501 668 AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPGESR 705 (726)
T ss_pred cCCCCEEEEECCCCChHHHHHhcccCceEEEECCCCCc
Confidence 6 46899999999999999996 799999997653
No 72
>PLN02423 phosphomannomutase
Probab=98.69 E-value=7.4e-08 Score=92.97 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=39.2
Q ss_pred EEEcCChH--hHHHHHHHHHHCCCEEEEEcC----ChhhHHHHHh-CCccEEecc
Q psy78 470 IFARMSSD--QKQQLVLELQQLGYYVAMCGD----GANDCGALRA-AHAGISLSE 517 (523)
Q Consensus 470 v~~~~~p~--~K~~~i~~L~~~~~~V~a~GD----G~ND~~MLk~-A~vGIAMgn 517 (523)
.+.++.|. +|+.+++.|+ ..++|+|||| |.||++||+. --.|+++.+
T Consensus 179 ~~iDi~~~gvnKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 179 ISFDVFPQGWDKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred EEEEEeeCCCCHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 35566665 8999999999 8899999999 8999999997 557777764
No 73
>KOG1615|consensus
Probab=98.62 E-value=4.4e-08 Score=86.92 Aligned_cols=109 Identities=24% Similarity=0.252 Sum_probs=77.1
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeE--EEeecCCCCCCCCCceEEEecCcchhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETV--VDVSAVPGGLKECPKVYFTVSGVSAIQTKA 422 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~--i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (523)
-.++|++++.+..|+++|.++.++||.-...+.+++.+|||+..+.+. +.+.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd-------------------------- 140 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFD-------------------------- 140 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeec--------------------------
Confidence 347899999999999999999999999999999999999997532211 0000
Q ss_pred hhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC--CCEEEEEcCCh
Q psy78 423 KKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL--GYYVAMCGDGA 500 (523)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~--~~~V~a~GDG~ 500 (523)
.+|+..- +. ..-.-+....|+.+++.+++. ...++|+|||.
T Consensus 141 ----------------------~~Gk~~g---------fd------~~~ptsdsggKa~~i~~lrk~~~~~~~~mvGDGa 183 (227)
T KOG1615|consen 141 ----------------------KDGKYLG---------FD------TNEPTSDSGGKAEVIALLRKNYNYKTIVMVGDGA 183 (227)
T ss_pred ----------------------cCCcccc---------cc------cCCccccCCccHHHHHHHHhCCChheeEEecCCc
Confidence 0000000 00 000111224799999999985 56799999999
Q ss_pred hhHHHHHhCCccEEec
Q psy78 501 NDCGALRAAHAGISLS 516 (523)
Q Consensus 501 ND~~MLk~A~vGIAMg 516 (523)
||++|+.-|+.=|+.|
T Consensus 184 tDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 184 TDLEAMPPADAFIGFG 199 (227)
T ss_pred cccccCCchhhhhccC
Confidence 9999999877655554
No 74
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.55 E-value=7.1e-08 Score=82.81 Aligned_cols=86 Identities=24% Similarity=0.275 Sum_probs=73.0
Q ss_pred HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78 353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE 432 (523)
Q Consensus 353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (523)
..|+.+++.|+++.|+|||....+..-+++||+..
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~--------------------------------------------- 76 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKH--------------------------------------------- 76 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCce---------------------------------------------
Confidence 57899999999999999999999999999999941
Q ss_pred hhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHh
Q psy78 433 ELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRA 508 (523)
Q Consensus 433 ~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~ 508 (523)
++ .-..+|..+.+.|.+. .++++.+||-.||+|+|+.
T Consensus 77 -------------------------------------~~--qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~ 117 (170)
T COG1778 77 -------------------------------------LY--QGISDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEK 117 (170)
T ss_pred -------------------------------------ee--echHhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHH
Confidence 11 0126788888887775 5789999999999999999
Q ss_pred CCccEEecccCCCC
Q psy78 509 AHAGISLSEAESPI 522 (523)
Q Consensus 509 A~vGIAMgna~~~v 522 (523)
.|+++|..+|.+.+
T Consensus 118 vGls~a~~dAh~~v 131 (170)
T COG1778 118 VGLSVAVADAHPLL 131 (170)
T ss_pred cCCcccccccCHHH
Confidence 99999999998754
No 75
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.55 E-value=6.1e-07 Score=84.21 Aligned_cols=103 Identities=24% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL 425 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (523)
++.|++.+.++.|+++ +++.++||.....+..+.+++|+...-...+...+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~-------------------------- 120 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDG-------------------------- 120 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCC--------------------------
Confidence 4689999999999999 9999999999999999999999852110001000000
Q ss_pred ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEE-cCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78 426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFA-RMSSDQKQQLVLELQQLGYYVAMCGDGANDCG 504 (523)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~ 504 (523)
. .... ...|..|...++.++..++.++++|||.||++
T Consensus 121 ------------------~------------------------i~~~~~~~p~~k~~~l~~~~~~~~~~v~iGDs~~D~~ 158 (205)
T PRK13582 121 ------------------M------------------------ITGYDLRQPDGKRQAVKALKSLGYRVIAAGDSYNDTT 158 (205)
T ss_pred ------------------e------------------------EECccccccchHHHHHHHHHHhCCeEEEEeCCHHHHH
Confidence 0 0000 11356788888888888889999999999999
Q ss_pred HHHhCCccEEecc
Q psy78 505 ALRAAHAGISLSE 517 (523)
Q Consensus 505 MLk~A~vGIAMgn 517 (523)
|.+.||+|++.+.
T Consensus 159 ~~~aa~~~v~~~~ 171 (205)
T PRK13582 159 MLGEADAGILFRP 171 (205)
T ss_pred HHHhCCCCEEECC
Confidence 9999999998764
No 76
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.55 E-value=2.7e-07 Score=87.62 Aligned_cols=106 Identities=26% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL 425 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (523)
++.|++++.|+.|+++|+++.|+||.+...+..+++.+|++..-+..+..++..
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~-------------------------- 138 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGK-------------------------- 138 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCE--------------------------
Confidence 589999999999999999999999999999999999999863100000000000
Q ss_pred ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEE-cCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78 426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFA-RMSSDQKQQLVLELQQL----GYYVAMCGDGA 500 (523)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ 500 (523)
+++ .+.. ...+..|..+++.+.+. .++++++||+.
T Consensus 139 -------------------~~~---------------------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~ 178 (219)
T TIGR00338 139 -------------------LTG---------------------LVEGPIVDASYKGKTLLILLRKEGISPENTVAVGDGA 178 (219)
T ss_pred -------------------EEE---------------------EecCcccCCcccHHHHHHHHHHcCCCHHHEEEEECCH
Confidence 000 0000 01123466666666554 35799999999
Q ss_pred hhHHHHHhCCccEEecc
Q psy78 501 NDCGALRAAHAGISLSE 517 (523)
Q Consensus 501 ND~~MLk~A~vGIAMgn 517 (523)
||++|++.||++++|+.
T Consensus 179 ~Di~aa~~ag~~i~~~~ 195 (219)
T TIGR00338 179 NDLSMIKAAGLGIAFNA 195 (219)
T ss_pred HHHHHHHhCCCeEEeCC
Confidence 99999999999999964
No 77
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.47 E-value=5.1e-07 Score=84.51 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=77.8
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCC-CCeEEE-eecCCCCCCCCCceEEEecCcchhhhh
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP-GETVVD-VSAVPGGLKECPKVYFTVSGVSAIQTK 421 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~-~~~~i~-~ng~~~~~~~~~~~~~~~~~~~~~~~~ 421 (523)
..++.+++.+.|+.++++|++++++||.+...+..+++.+|++.- ...+.. .+|
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g------------------------ 140 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDG------------------------ 140 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCC------------------------
Confidence 456899999999999999999999999999999999999998621 000000 000
Q ss_pred hhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEc
Q psy78 422 AKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCG 497 (523)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~G 497 (523)
..+|+ .....+.++.|...++.+.+. .+.++++|
T Consensus 141 ----------------------~~~g~--------------------~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~g 178 (202)
T TIGR01490 141 ----------------------IYTGN--------------------IDGNNCKGEGKVHALAELLAEEQIDLKDSYAYG 178 (202)
T ss_pred ----------------------EEeCC--------------------ccCCCCCChHHHHHHHHHHHHcCCCHHHcEeee
Confidence 00000 000112356788878776653 34789999
Q ss_pred CChhhHHHHHhCCccEEeccc
Q psy78 498 DGANDCGALRAAHAGISLSEA 518 (523)
Q Consensus 498 DG~ND~~MLk~A~vGIAMgna 518 (523)
|+.||++|++.||.++++...
T Consensus 179 Ds~~D~~~~~~a~~~~~v~~~ 199 (202)
T TIGR01490 179 DSISDLPLLSLVGHPYVVNPD 199 (202)
T ss_pred CCcccHHHHHhCCCcEEeCCC
Confidence 999999999999999988653
No 78
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.41 E-value=8.9e-07 Score=81.96 Aligned_cols=38 Identities=34% Similarity=0.545 Sum_probs=36.0
Q ss_pred cchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 349 ~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
+++.+.|+.++++|++++|+||.+...+.++++.+|++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 67779999999999999999999999999999999996
No 79
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.41 E-value=1.5e-06 Score=79.41 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
+++++.+.++.++++|++++++||.+...+.++++.+|+.
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 6799999999999999999999999999999999999985
No 80
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.40 E-value=1.2e-06 Score=75.74 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=40.7
Q ss_pred eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
...++.+++.+.+++|+++|++++++||+....+...++.+|+..
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~ 65 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence 344789999999999999999999999999999999999998853
No 81
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.40 E-value=2.5e-06 Score=80.67 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=76.1
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK 423 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (523)
+.+++|++.+.++.|+++|+++.|+||.....+.++++.++.. ..+. .|...... ..+...
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~---~~i~-~n~~~~~~---~~~~~~------------ 128 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK---DRIY-CNEADFSN---EYIHID------------ 128 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc---ccEE-eceeEeeC---CeeEEe------------
Confidence 3579999999999999999999999999999898888877432 1111 11110000 000000
Q ss_pred hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhH
Q psy78 424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDC 503 (523)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~ 503 (523)
.. .+.. .....-....|..+++.++...+.++++|||.||+
T Consensus 129 -----------------------~p--------~~~~--------~~~~~~cg~~K~~~l~~~~~~~~~~i~iGDg~~D~ 169 (214)
T TIGR03333 129 -----------------------WP--------HPCD--------GTCQNQCGCCKPSLIRKLSEPNDYHIVIGDSVTDV 169 (214)
T ss_pred -----------------------CC--------CCCc--------cccccCCCCCHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence 00 0000 00001113579999998887778899999999999
Q ss_pred HHHHhCCccEEec
Q psy78 504 GALRAAHAGISLS 516 (523)
Q Consensus 504 ~MLk~A~vGIAMg 516 (523)
+|.+.||+++|=+
T Consensus 170 ~~a~~Ad~~~ar~ 182 (214)
T TIGR03333 170 EAAKQSDLCFARD 182 (214)
T ss_pred HHHHhCCeeEehH
Confidence 9999999987743
No 82
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.31 E-value=4.8e-06 Score=79.05 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=73.6
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL 425 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (523)
+++|++.+.++.|+++|+++.|+||-....+.++.+.+ +.. ..++.... .... ..+...
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~--~~i~~n~~-~~~~---~~~~~~-------------- 132 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPK--EQIYCNGS-DFSG---EYITIT-------------- 132 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCc--CcEEEeEE-EecC---CeeEEe--------------
Confidence 68999999999999999999999999999999999888 642 22222111 0000 000000
Q ss_pred ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEE-EEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78 426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI-FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG 504 (523)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v-~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~ 504 (523)
.+. +. .. +.......|..+++.+....+.++++|||.||+.
T Consensus 133 -------------------------------kp~--p~-----~~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~ 174 (219)
T PRK09552 133 -------------------------------WPH--PC-----DEHCQNHCGCCKPSLIRKLSDTNDFHIVIGDSITDLE 174 (219)
T ss_pred -------------------------------ccC--Cc-----cccccccCCCchHHHHHHhccCCCCEEEEeCCHHHHH
Confidence 000 00 00 0000123488888888777788999999999999
Q ss_pred HHHhCCccEE
Q psy78 505 ALRAAHAGIS 514 (523)
Q Consensus 505 MLk~A~vGIA 514 (523)
|.+.||+.+|
T Consensus 175 aa~~Ag~~~a 184 (219)
T PRK09552 175 AAKQADKVFA 184 (219)
T ss_pred HHHHCCccee
Confidence 9999999776
No 83
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.26 E-value=8.5e-06 Score=72.84 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=73.4
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH---HHHHHc---CccCCCCeEEEeecCCCCCCCCCceEEEecCcch
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAI---SVAKEC---GIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA 417 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~---~ia~~l---gi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~ 417 (523)
++.+.+++++++++++++|++++++|||+...+. ...+++ |...+..++++.|+.......
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~------------- 91 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALH------------- 91 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhh-------------
Confidence 4678999999999999999999999999998874 566552 333344677777765421100
Q ss_pred hhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCCh-HhHHHHHHHHHHC-----CC
Q psy78 418 IQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSS-DQKQQLVLELQQL-----GY 491 (523)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p-~~K~~~i~~L~~~-----~~ 491 (523)
. .+. .-.| +.|...++.+.+. ..
T Consensus 92 -------------------------------------~-------------e~i-~~~~~~~K~~~l~~i~~~~~~~~~~ 120 (157)
T smart00775 92 -------------------------------------R-------------EVI-SKKPEVFKIACLRDIKSLFPPQGNP 120 (157)
T ss_pred -------------------------------------c-------------ccc-cCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 0 011 1123 3477778877773 35
Q ss_pred EEEEEcCChhhHHHHHhCCcc
Q psy78 492 YVAMCGDGANDCGALRAAHAG 512 (523)
Q Consensus 492 ~V~a~GDG~ND~~MLk~A~vG 512 (523)
-+++|||+.+|+.+-+++|+.
T Consensus 121 f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 121 FYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred EEEEeCCCchhHHHHHHcCCC
Confidence 567899999999999998864
No 84
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.26 E-value=3.1e-06 Score=77.99 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=76.2
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
-++.+++.+.++.|++.|+++.++|+.+...+..+.+.+|+...-+.++ .+....... ..
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~-~~~~~~~~~--g~----------------- 130 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIY-SNPASFDND--GR----------------- 130 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEe-ccCceECCC--Cc-----------------
Confidence 4789999999999999999999999999999999999998853211222 111100000 00
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEc-CChHhHHHHHHHHHHC-CCEEEEEcCChhh
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFAR-MSSDQKQQLVLELQQL-GYYVAMCGDGAND 502 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND 502 (523)
+..... ....+.. .....|..+++.+++. .+.++++|||.||
T Consensus 131 ------------------~~~~~~------------------~~~~~~~~~~g~~K~~~~~~~~~~~~~~~i~iGD~~~D 174 (188)
T TIGR01489 131 ------------------HIVWPH------------------HCHGCCSCPCGCCKGKVIHKLSEPKYQHIIYIGDGVTD 174 (188)
T ss_pred ------------------EEEecC------------------CCCccCcCCCCCCHHHHHHHHHhhcCceEEEECCCcch
Confidence 000000 0000111 1123689999999887 8899999999999
Q ss_pred HHHHHhCCccEE
Q psy78 503 CGALRAAHAGIS 514 (523)
Q Consensus 503 ~~MLk~A~vGIA 514 (523)
++|-+.||+-.|
T Consensus 175 ~~aa~~~d~~~a 186 (188)
T TIGR01489 175 VCPAKLSDVVFA 186 (188)
T ss_pred hchHhcCCcccc
Confidence 999999987554
No 85
>PLN02954 phosphoserine phosphatase
Probab=98.13 E-value=1.5e-05 Score=75.94 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=38.9
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.+.++.|+++|+++.|+||.....+..+++.+|++
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999985
No 86
>PLN02580 trehalose-phosphatase
Probab=98.11 E-value=2.3e-05 Score=79.44 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=42.0
Q ss_pred EEcCChH---hHHHHHHHHHHCC----C-E--EEEEcCChhhHHHHHh-----CCccEEecccCCCC
Q psy78 471 FARMSSD---QKQQLVLELQQLG----Y-Y--VAMCGDGANDCGALRA-----AHAGISLSEAESPI 522 (523)
Q Consensus 471 ~~~~~p~---~K~~~i~~L~~~~----~-~--V~a~GDG~ND~~MLk~-----A~vGIAMgna~~~v 522 (523)
..++.|. +|+.+++.+.++. . . +++|||..||.+||+. +|+||+|||+..+.
T Consensus 291 vlEVrP~~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vgn~~~~t 357 (384)
T PLN02580 291 VLEVRPVIDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSSVPKES 357 (384)
T ss_pred EEEEecCCCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEecCCCCc
Confidence 4566663 9999999998862 1 2 4899999999999996 69999999976543
No 87
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.03 E-value=1.4e-05 Score=89.60 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=36.7
Q ss_pred ccceeeeeeeeccCCCcchHHHHHHH-HhCCCcEEEEcCCCHhhHHHHHH
Q psy78 333 KDLEFLGLIILENRLKPQTEGVIKEL-KDARVKVVMITGDNIQTAISVAK 381 (523)
Q Consensus 333 ~dl~~lG~i~~~d~lr~~t~~aI~~L-k~~Gi~vvi~TGr~~~~a~~ia~ 381 (523)
-|+|++-.-.....+.+++.++|++| ++.|+.|+++|||+..+......
T Consensus 603 yDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 603 YDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred cCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 34455433222336778999999997 78899999999999999887654
No 88
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.02 E-value=3.7e-05 Score=72.36 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=74.5
Q ss_pred CCCcchHHHHH-HHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 346 RLKPQTEGVIK-ELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 346 ~lr~~t~~aI~-~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.+.|++.++|+ .++++|++++|+|+-+...+.++++..++... ..+++.+ ....
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~-~~~i~t~-le~~----------------------- 148 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHR-LNLIASQ-IERG----------------------- 148 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccccc-CcEEEEE-eEEe-----------------------
Confidence 57899999996 78889999999999999999999999766421 1222111 0000
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH-CCCEEEEEcCChhhH
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ-LGYYVAMCGDGANDC 503 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~-~~~~V~a~GDG~ND~ 503 (523)
+|. ......+..+.|..-++.... ..+...|-||+.||.
T Consensus 149 ---------------------~gg-------------------~~~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~~D~ 188 (210)
T TIGR01545 149 ---------------------NGG-------------------WVLPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSKQDN 188 (210)
T ss_pred ---------------------CCc-------------------eEcCccCCChHHHHHHHHHhCCChhheEEecCCcccH
Confidence 000 001123455788887775543 234567999999999
Q ss_pred HHHHhCCccEEecc
Q psy78 504 GALRAAHAGISLSE 517 (523)
Q Consensus 504 ~MLk~A~vGIAMgn 517 (523)
|||+.||.++++..
T Consensus 189 pmL~~a~~~~~Vnp 202 (210)
T TIGR01545 189 PLLAFCEHRWRVSK 202 (210)
T ss_pred HHHHhCCCcEEECc
Confidence 99999999998864
No 89
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.99 E-value=5.4e-05 Score=71.91 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=41.0
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
...+-|++++++..|+++|++..++|+++...+..+.+.+|+..
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~ 130 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD 130 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc
Confidence 55788999999999999999999999999999999999999864
No 90
>PRK08238 hypothetical protein; Validated
Probab=97.98 E-value=3.9e-05 Score=80.81 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL 425 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (523)
+++|++.+.+++++++|++++++||.+...+..+++.+|+. +.++..++.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlF---d~Vigsd~~--------------------------- 121 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLF---DGVFASDGT--------------------------- 121 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC---CEEEeCCCc---------------------------
Confidence 47899999999999999999999999999999999999972 122222110
Q ss_pred ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHH
Q psy78 426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGA 505 (523)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~M 505 (523)
....|+.|...++..... +...++||+.||++|
T Consensus 122 ----------------------------------------------~~~kg~~K~~~l~~~l~~-~~~~yvGDS~~Dlp~ 154 (479)
T PRK08238 122 ----------------------------------------------TNLKGAAKAAALVEAFGE-RGFDYAGNSAADLPV 154 (479)
T ss_pred ----------------------------------------------cccCCchHHHHHHHHhCc-cCeeEecCCHHHHHH
Confidence 123345565554432222 336778999999999
Q ss_pred HHhCCccEEecccC
Q psy78 506 LRAAHAGISLSEAE 519 (523)
Q Consensus 506 Lk~A~vGIAMgna~ 519 (523)
++.||-+++++...
T Consensus 155 ~~~A~~av~Vn~~~ 168 (479)
T PRK08238 155 WAAARRAIVVGASP 168 (479)
T ss_pred HHhCCCeEEECCCH
Confidence 99999999998653
No 91
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.95 E-value=7e-05 Score=71.22 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=39.4
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
..++.|++.++++.|+++|++++++||.....+....+.+|+.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 133 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA 133 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc
Confidence 3568899999999999999999999999999999999999885
No 92
>PRK11590 hypothetical protein; Provisional
Probab=97.95 E-value=5e-05 Score=71.61 Aligned_cols=107 Identities=12% Similarity=0.012 Sum_probs=75.2
Q ss_pred CCCcchHHHH-HHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 346 RLKPQTEGVI-KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 346 ~lr~~t~~aI-~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.+.|++.+.| +.++++|++++++|+.+..-+.++++.+|+.. ...+++..- .
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~l-~------------------------- 147 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQM-Q------------------------- 147 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEEE-E-------------------------
Confidence 4589999999 57888999999999999999999999999631 122322110 0
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH-CCCEEEEEcCChhhH
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ-LGYYVAMCGDGANDC 503 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~-~~~~V~a~GDG~ND~ 503 (523)
...+|. .....+..+.|...++.... ......|-||+.||.
T Consensus 148 ------------------~~~tg~--------------------~~g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~ 189 (211)
T PRK11590 148 ------------------RRYGGW--------------------VLTLRCLGHEKVAQLERKIGTPLRLYSGYSDSKQDN 189 (211)
T ss_pred ------------------EEEccE--------------------ECCccCCChHHHHHHHHHhCCCcceEEEecCCcccH
Confidence 000010 01123455788887776542 345568999999999
Q ss_pred HHHHhCCccEEecc
Q psy78 504 GALRAAHAGISLSE 517 (523)
Q Consensus 504 ~MLk~A~vGIAMgn 517 (523)
|||+.|+.++++..
T Consensus 190 pmL~~a~~~~~vnp 203 (211)
T PRK11590 190 PLLYFCQHRWRVTP 203 (211)
T ss_pred HHHHhCCCCEEECc
Confidence 99999999998864
No 93
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.92 E-value=4.2e-05 Score=73.85 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=35.6
Q ss_pred hHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC--------CccEEec
Q psy78 476 SDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA--------HAGISLS 516 (523)
Q Consensus 476 p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A--------~vGIAMg 516 (523)
+.+|+.+++.+.+. ...++++||+.||.+|++.+ +.||+|+
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEe
Confidence 34899999998876 35799999999999999999 5899995
No 94
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.78 E-value=0.00018 Score=70.58 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=38.3
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
.++.|++.++|+.|+++|++++++||.+...+..+.+.+|+.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~ 141 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG 141 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH
Confidence 467899999999999999999999999998888888888875
No 95
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.77 E-value=0.00017 Score=67.60 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=38.6
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
-++.+++.++|++|+++|+++.++||.+...+....+.+|+.
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~ 115 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL 115 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh
Confidence 367899999999999999999999999999898888999885
No 96
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.76 E-value=0.00018 Score=67.67 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=38.4
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++|+.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 68899999999999999999999999999999999999985
No 97
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.69 E-value=0.00023 Score=69.01 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=41.2
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCC
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG 389 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~ 389 (523)
-+++|++.+.++.|+++|+++.++||-....+..+++++|+..+.
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~ 164 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPN 164 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcC
Confidence 468999999999999999999999999999999999999986544
No 98
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.68 E-value=0.00016 Score=68.66 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=39.5
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
.++.|++.++|+.|+++|++++++||.....+..+.+.+|+..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~ 133 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD 133 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh
Confidence 4688999999999999999999999999999999999999863
No 99
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.60 E-value=0.00031 Score=66.30 Aligned_cols=41 Identities=20% Similarity=0.061 Sum_probs=38.2
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++|+.|+++|+++.++||.+...+..+.+.+|+.
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~ 122 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD 122 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 47899999999999999999999999999999999999985
No 100
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.53 E-value=0.00073 Score=64.56 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=37.7
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
-++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~ 135 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE 135 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch
Confidence 357899999999999999999999999988888888888875
No 101
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.53 E-value=0.00031 Score=64.12 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCC
Q psy78 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401 (523)
Q Consensus 348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~ 401 (523)
.+.+...+.+|+++|+.|+.+|.........+-+.+|+.+ -+.+.-||..++
T Consensus 25 ~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~--~p~iaEnG~aI~ 76 (274)
T COG3769 25 WQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG--LPLIAENGAAIY 76 (274)
T ss_pred CCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC--CceeecCCceEE
Confidence 3567899999999999999999999999999999999863 456666666544
No 102
>PLN03017 trehalose-phosphatase
Probab=97.47 E-value=0.001 Score=66.98 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=46.5
Q ss_pred cceeeeeeeecc--CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCC
Q psy78 334 DLEFLGLIILEN--RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401 (523)
Q Consensus 334 dl~~lG~i~~~d--~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~ 401 (523)
|+|++-+..-.+ .+.++++++|++|+ +|+.++++|||+...+..+. ++ .+-+++..||....
T Consensus 119 DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~---~l--~~l~l~g~hGa~i~ 182 (366)
T PLN03017 119 DGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV---KL--AELYYAGSHGMDIK 182 (366)
T ss_pred CCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh---cc--cCceEEEcCCcEEe
Confidence 455554443223 48899999999999 78999999999999988773 33 34567888887654
No 103
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=97.44 E-value=7.4e-05 Score=71.42 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=48.5
Q ss_pred cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccc
Q psy78 182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVIN 261 (523)
Q Consensus 182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~ 261 (523)
.+.++...+.+++++++++|||+||+++++++.+++.+|+|+ |+++|+++++|
T Consensus 177 ~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~---------------------------~i~v~~~~a~E 229 (230)
T PF00122_consen 177 SGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKN---------------------------GIIVKNLSALE 229 (230)
T ss_dssp TTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT---------------------------TEEESSTTHHH
T ss_pred cccccccccccccceeeeecccceeehHHHHHHHHHHHHHHC---------------------------CEEEeCccccc
Confidence 345667899999999999999999999999999999999999 99999999887
Q ss_pred c
Q psy78 262 V 262 (523)
Q Consensus 262 ~ 262 (523)
.
T Consensus 230 ~ 230 (230)
T PF00122_consen 230 A 230 (230)
T ss_dssp H
T ss_pred C
Confidence 3
No 104
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.44 E-value=0.00092 Score=63.31 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=39.2
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
.++.+++.+.|+.|+++|+++.++||.+...+..+.+.+|+.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 478999999999999999999999999999999999999875
No 105
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.44 E-value=0.00078 Score=62.69 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=38.4
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
.+++.+...++|+.|+++|+++.++||.+...+..+.+.+|+.
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~ 146 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE 146 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch
Confidence 3446667799999999999999999999999999999999985
No 106
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.42 E-value=0.00065 Score=67.70 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=41.0
Q ss_pred eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
..+++.+++.++|++|+++|++++++|||+...+..+.+.+++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~ 227 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT 227 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999875
No 107
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00068 Score=60.15 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=72.9
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCC-CCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP-GETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 424 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~-~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.++|+-++.++.++++++.++++||....-+.++.++++=... .+.-+..|...+...
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~d--------------------- 131 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHID--------------------- 131 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCC---------------------
Confidence 5899999999999999999999999998888888887651100 001111111100000
Q ss_pred cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78 425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG 504 (523)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~ 504 (523)
..+.+..+ .......+|...|+.+++..+.+.++|||.-|++
T Consensus 132 --------------g~h~i~~~------------------------~ds~fG~dK~~vI~~l~e~~e~~fy~GDsvsDls 173 (220)
T COG4359 132 --------------GQHSIKYT------------------------DDSQFGHDKSSVIHELSEPNESIFYCGDSVSDLS 173 (220)
T ss_pred --------------CceeeecC------------------------CccccCCCcchhHHHhhcCCceEEEecCCccccc
Confidence 00000000 0011224899999999999999999999999999
Q ss_pred HHHhCCccEE
Q psy78 505 ALRAAHAGIS 514 (523)
Q Consensus 505 MLk~A~vGIA 514 (523)
+=+.+|+=.|
T Consensus 174 aaklsDllFA 183 (220)
T COG4359 174 AAKLSDLLFA 183 (220)
T ss_pred HhhhhhhHhh
Confidence 9888876544
No 108
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.30 E-value=0.00072 Score=64.52 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=35.5
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCC----CHhhHHHHHHHcCcc
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGD----NIQTAISVAKECGII 386 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr----~~~~a~~ia~~lgi~ 386 (523)
+.+.+++.|+.++++|+++.++|+| ...++..+.+.+|++
T Consensus 115 p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~ 158 (237)
T TIGR01672 115 PKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP 158 (237)
T ss_pred chhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc
Confidence 4455999999999999999999999 667888999999995
No 109
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.25 E-value=0.0012 Score=62.86 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=35.4
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCC----HhhHHHHHHHcCc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDN----IQTAISVAKECGI 385 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~----~~~a~~ia~~lgi 385 (523)
-.+.+++++.|+.++++|+++.++|||+ ..++..+.+.+|+
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gi 157 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHI 157 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCC
Confidence 4467889999999999999999999996 4477788888888
No 110
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.21 E-value=0.0036 Score=58.21 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++|++|+++|+++.++|+-+...+....+.+|+.
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~ 132 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD 132 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh
Confidence 57799999999999999999999999988888888889875
No 111
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.20 E-value=0.0023 Score=61.98 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=38.9
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
++.|++.++|+.|+++|+++.|+|+.+...+....+.+|+..
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~ 149 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD 149 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh
Confidence 578999999999999999999999999999999999999863
No 112
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.20 E-value=0.0017 Score=63.64 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.+.|+.|+++|+++.++|+.+...+....+.+|+.
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~ 182 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR 182 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 57899999999999999999999999999999999999985
No 113
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.17 E-value=0.0019 Score=55.81 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=36.2
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCC--------HhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDN--------IQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~--------~~~a~~ia~~lgi~ 386 (523)
++.+++.++++.|+++|++++++|+.+ ...+....+.+|+.
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999998 66777788888873
No 114
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.16 E-value=0.0024 Score=61.91 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
++.|++.+.|+.|+++|+++.++||.+...+..+.+.+|+..
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~ 140 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG 140 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999998863
No 115
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.08 E-value=0.0032 Score=59.57 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++|++|+++|++++++|+.+...+....+.+|+.
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR 134 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH
Confidence 57899999999999999999999999888888888888885
No 116
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.98 E-value=0.0067 Score=57.69 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=37.3
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
-++.|++.+.++.|+++|+++.++|+-+...+....+.+|+.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~ 133 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD 133 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH
Confidence 357899999999999999999999998888888877888875
No 117
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.97 E-value=0.0057 Score=59.52 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
++.+++++.|+.|+++|+++.|+|+.+...+..+.+.+|+..
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~ 150 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG 150 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh
Confidence 578999999999999999999999999999999999999853
No 118
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.96 E-value=0.0037 Score=56.21 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=39.6
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
..++.+++.++|++|+++|++++++|+.+...+....+++|+.
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 4468899999999999999999999999999999999999986
No 119
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.95 E-value=0.0029 Score=60.03 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=38.5
Q ss_pred cCCCcchHHHHHHH--HhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 345 NRLKPQTEGVIKEL--KDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 345 d~lr~~t~~aI~~L--k~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
=|+.|+.+++++.+ ++.|+.+.|+|.-+..-...+.+.-|+..
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~ 114 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD 114 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc
Confidence 36789999999999 56799999999999999999999999864
No 120
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.88 E-value=0.0027 Score=58.13 Aligned_cols=39 Identities=21% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++|+.|+++|+++.++|+... +....+.+|+.
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~ 125 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLI 125 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcH
Confidence 6789999999999999999999998643 45667778875
No 121
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.86 E-value=0.009 Score=54.44 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=34.2
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++++.|+++|++++++|+-+... ..+..++|+.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~ 124 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR 124 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH
Confidence 678999999999999999999999988877 5555557775
No 122
>PRK11587 putative phosphatase; Provisional
Probab=96.84 E-value=0.0085 Score=56.67 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=34.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi 385 (523)
++.|++.++|+.|+++|+++.++|+.+...+....+..|+
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l 122 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL 122 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC
Confidence 5789999999999999999999999887766666666666
No 123
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.83 E-value=0.0081 Score=58.77 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++-|++.++|+.|+++|+++.++||.+...+..+.+.+++.
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~ 141 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQ 141 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhc
Confidence 56899999999999999999999999999888888877764
No 124
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.81 E-value=0.003 Score=57.90 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=35.0
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
-++.|++.++|+.|+++|+++.++|+. ..+..+.+.+|++
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~ 126 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT 126 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH
Confidence 468999999999999999999999998 5577778888875
No 125
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.77 E-value=0.01 Score=53.79 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=41.4
Q ss_pred eeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCC-CHhhHHHHHHHcCcc
Q psy78 337 FLGLIILENRLKPQTEGVIKELKDARVKVVMITGD-NIQTAISVAKECGII 386 (523)
Q Consensus 337 ~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr-~~~~a~~ia~~lgi~ 386 (523)
......-+-++.|++.++++.|+++|+++.++|+. ....+..+.+.+|+.
T Consensus 36 ~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~ 86 (174)
T TIGR01685 36 IIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEIT 86 (174)
T ss_pred EEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcC
Confidence 44444445568899999999999999999999987 888888888888874
No 126
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.74 E-value=0.011 Score=60.20 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.+++.+.|+.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~ 256 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR 256 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH
Confidence 46799999999999999999999999999999999999985
No 127
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.74 E-value=0.0062 Score=64.55 Aligned_cols=42 Identities=7% Similarity=0.159 Sum_probs=39.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
++.|++.+.|+.|+++|+++.++|+.+...+..+.+.+|+..
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~ 371 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ 371 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh
Confidence 678999999999999999999999999999999999999853
No 128
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.73 E-value=0.008 Score=59.43 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcC
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG 384 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lg 384 (523)
++.|++.+.|+.|+++|+++.++|+.+......+.+.++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~ 182 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLL 182 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc
Confidence 578999999999999999999999998888877766553
No 129
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.61 E-value=0.014 Score=56.71 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=34.2
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH---HHHHHHcCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTA---ISVAKECGII 386 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a---~~ia~~lgi~ 386 (523)
..++-|++.+.++.|+++|+++.++|+|+.... ....+..|+.
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~ 161 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFP 161 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcC
Confidence 345679999999999999999999999985443 3455667774
No 130
>KOG3120|consensus
Probab=96.59 E-value=0.0094 Score=54.72 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=75.6
Q ss_pred cCCCcchHHHHHHHHhCCC-cEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78 345 NRLKPQTEGVIKELKDARV-KVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK 423 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi-~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (523)
=|+.|+..++|+.+++.|. .+.|+|--+...+..+.+..|+..-=.. |.-|.+..+....
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~-IfTNPa~~da~G~------------------ 143 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSE-IFTNPACVDASGR------------------ 143 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHH-HhcCCcccCCCCc------------------
Confidence 3678999999999999997 8999999999999999999987420000 1111111110000
Q ss_pred hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHh--HHHHHHHHHHC-------CCEEE
Q psy78 424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQ--KQQLVLELQQL-------GYYVA 494 (523)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~--K~~~i~~L~~~-------~~~V~ 494 (523)
+.+.+ ++ ...-|...|.+ |+.++..+... -+.++
T Consensus 144 -------------------L~v~p---------yH---------~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~i 186 (256)
T KOG3120|consen 144 -------------------LLVRP---------YH---------TQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLI 186 (256)
T ss_pred -------------------EEeec---------CC---------CCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEE
Confidence 00000 00 01234445654 88888877653 24789
Q ss_pred EEcCChhh-HHHHHhCCccEEec
Q psy78 495 MCGDGAND-CGALRAAHAGISLS 516 (523)
Q Consensus 495 a~GDG~ND-~~MLk~A~vGIAMg 516 (523)
.+|||.|| +|+++..+--+||-
T Consensus 187 YvGDG~nD~CP~l~Lr~~D~amp 209 (256)
T KOG3120|consen 187 YVGDGANDFCPVLRLRACDVAMP 209 (256)
T ss_pred EEcCCCCCcCcchhcccCceecc
Confidence 99999999 68888888888884
No 131
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=96.53 E-value=0.018 Score=54.38 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=34.4
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhh---HHHHHHHcCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKECGII 386 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~---a~~ia~~lgi~ 386 (523)
+-+.-|++.++++.|+++|++|+++|||+... +..-.++.|++
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~ 163 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFT 163 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 34678999999999999999999999999765 33444556765
No 132
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.46 E-value=0.015 Score=51.37 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCH---------------hhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNI---------------QTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~---------------~~a~~ia~~lgi~ 386 (523)
++.|++.++++.|+++|+++.++|..+. ..+....+.+|+.
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999998652 3445566677763
No 133
>PLN02940 riboflavin kinase
Probab=96.43 E-value=0.011 Score=61.06 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHH-HcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK-ECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~-~lgi~ 386 (523)
++.|++.+.|+.|+++|+++.|+|+.+...+....+ ..|+.
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~ 134 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK 134 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH
Confidence 577999999999999999999999998888776665 56764
No 134
>PRK06769 hypothetical protein; Validated
Probab=96.33 E-value=0.015 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.8
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCH
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNI 373 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~ 373 (523)
+-|+++++|++|+++|+++.++|+.+.
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 679999999999999999999998763
No 135
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.30 E-value=0.023 Score=52.97 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++-|++.++|+.|+++|+++.++|+-+.. +....+.+|+.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~ 144 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL 144 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH
Confidence 57799999999999999999999986654 46677777774
No 136
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.30 E-value=0.018 Score=50.98 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=34.5
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC 383 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l 383 (523)
+....+++.+.++.|+++|+++.++|+.+...+....+..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~ 101 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH 101 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH
Confidence 3345689999999999999999999999999888777765
No 137
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.29 E-value=0.015 Score=52.62 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=33.9
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCC-HhhHHHHHHHcCc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDN-IQTAISVAKECGI 385 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~-~~~a~~ia~~lgi 385 (523)
.+.+++.++|++|+++|++++++|+.+ ...+..+.+.+|+
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl 83 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGI 83 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCC
Confidence 577999999999999999999999988 5666667777765
No 138
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.24 E-value=0.025 Score=51.74 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCC
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDN 372 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~ 372 (523)
+.|++.++|++|+++|+++.++|..+
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 67999999999999999999999876
No 139
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.24 E-value=0.0057 Score=54.10 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=37.3
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
.-+++|++.+.|+.|+ +++++.|+|.-+...+..+.+.+++.
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~ 84 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPK 84 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcC
Confidence 3457999999999999 57999999999999999999988874
No 140
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.08 E-value=0.032 Score=50.09 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCC---------------HhhHHHHHHHcCc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDN---------------IQTAISVAKECGI 385 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~---------------~~~a~~ia~~lgi 385 (523)
++-|++.++|++|+++|++++++|--+ ...+..+.+++|+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl 83 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGI 83 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCC
Confidence 356899999999999999999999742 3345566677776
No 141
>PLN02151 trehalose-phosphatase
Probab=95.92 E-value=0.055 Score=54.48 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=36.0
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCC
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPG 400 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~ 400 (523)
+.++++++|++|. ++..++|+|||+...+..+. ++. .-.+...+|...
T Consensus 121 ~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~---~~~--~l~laGsHG~e~ 168 (354)
T PLN02151 121 MSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFV---KLT--ELYYAGSHGMDI 168 (354)
T ss_pred CCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHc---CCc--cceEEEeCCcee
Confidence 7899999999999 56799999999999887764 321 234555666553
No 142
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.85 E-value=0.025 Score=56.86 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHH
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE 382 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~ 382 (523)
+.+++.++|++|+++|+++.++|.-+...+..+.+.
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 468999999999999999999999999999888877
No 143
>PLN02645 phosphoglycolate phosphatase
Probab=95.80 E-value=0.047 Score=54.70 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=40.0
Q ss_pred eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHH---HHcCcc
Q psy78 339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVA---KECGII 386 (523)
Q Consensus 339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia---~~lgi~ 386 (523)
|++.-.+.+-|++.++|++|+++|++++++|+++..+...++ +.+|+.
T Consensus 37 Gtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 37 GVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred CCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 666666778899999999999999999999999977776666 456664
No 144
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=95.79 E-value=0.026 Score=48.47 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=33.8
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCC-CHhhHHHHHHHcC
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGD-NIQTAISVAKECG 384 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr-~~~~a~~ia~~lg 384 (523)
++.+++.+.|+.|+++|+++.++|+. +...+..+.+..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 67899999999999999999999999 7776767666665
No 145
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.76 E-value=0.041 Score=51.94 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
++.|++.++|++|+++ ++++++|+.+...+....+.+|+..
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~ 137 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFP 137 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHh
Confidence 5789999999999999 9999999999998888999999853
No 146
>PRK09449 dUMP phosphatase; Provisional
Probab=95.61 E-value=0.097 Score=49.53 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++|+.|+ +|+++.++|......+....+.+|+.
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLR 134 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChH
Confidence 47899999999999 68999999998888888888888875
No 147
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.59 E-value=0.077 Score=47.86 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.1
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCHh------------hHHHHHHHcCcc
Q psy78 348 KPQTEGVIKELKDARVKVVMITGDNIQ------------TAISVAKECGII 386 (523)
Q Consensus 348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~------------~a~~ia~~lgi~ 386 (523)
-|++.++|++|+++|+++.++|..+.. .+..+.+.+|+.
T Consensus 44 ~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 94 (166)
T TIGR01664 44 YPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP 94 (166)
T ss_pred cCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999965432 345667778873
No 148
>PLN02811 hydrolase
Probab=95.56 E-value=0.062 Score=50.85 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=27.8
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTA 376 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a 376 (523)
.++.|++.+.|+.|+++|+++.++||-+....
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~ 108 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHF 108 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhH
Confidence 45789999999999999999999999876544
No 149
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.41 E-value=0.13 Score=48.59 Aligned_cols=41 Identities=7% Similarity=0.180 Sum_probs=34.1
Q ss_pred eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78 343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC 383 (523)
Q Consensus 343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l 383 (523)
.+.++.|++.++|++|+++|+++.|+|..+......+.+..
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 34568999999999999999999999998877666665544
No 150
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=95.38 E-value=0.033 Score=50.94 Aligned_cols=99 Identities=17% Similarity=0.268 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhhhcc-ccccccccCCCCccCCccchhHHHHHHHHHHhhheeeec--CCCcc-cccccchhHHHH
Q psy78 3 FQLILMVSMQIISFIIVHKF-AWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQ--GKPYR-TPIYKNKLFILS 78 (523)
Q Consensus 3 ~q~~i~~~~q~~~~~~~~~q-~w~~~~~~~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~--G~Pfr-~~~~~N~~~~~~ 78 (523)
.+-+++.++.+++|++.... .|-... .+.......|+.|....+.++...++.-. ++.|+ +++.+|+.+..+
T Consensus 56 ~~g~~~~~~~~~~f~~~~~~~~~~~~~----~~~~~~~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~ 131 (182)
T PF00689_consen 56 IQGLIMAAACFFAFFLGLYIFGWDEET----NNDNLAQAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIA 131 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTCSSSHH----HTTCHHHHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHH
Confidence 35566667777777665542 111000 00114557788899888888888766644 57788 899999999999
Q ss_pred HHHHHHHhhheeecCchHHHHhccccCCC
Q psy78 79 IIIMTWVCIYITLIPSEFIIQFLQLRFPP 107 (523)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 107 (523)
+++.+++.+.++..| .+++.|++.+++
T Consensus 132 ~~~~~~l~~~i~~~P--~~~~~f~~~~l~ 158 (182)
T PF00689_consen 132 ILISIALQILIVYVP--GLNRIFGTAPLP 158 (182)
T ss_dssp HHHHHHHHHHHHHST--THHHHST----T
T ss_pred HHHHHHHHHHHhcch--hhHhhhcccCCC
Confidence 999998888777775 578889998665
No 151
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.16 E-value=0.096 Score=50.37 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=38.3
Q ss_pred eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH--HHHHHcCcc
Q psy78 339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAI--SVAKECGII 386 (523)
Q Consensus 339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~--~ia~~lgi~ 386 (523)
|.+.-..++-|++.++|++|+++|+++.++|.-+..... ...+++|+.
T Consensus 17 G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 17 GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred cccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 555556778999999999999999999999986554443 566788885
No 152
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.04 E-value=0.037 Score=53.53 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=50.4
Q ss_pred eeeeeccCCCcchHHHHHHHHhCCCcEEEEcC---CCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78 339 GLIILENRLKPQTEGVIKELKDARVKVVMITG---DNIQTAISVAKECGIIDPGETVVDVSAVP 399 (523)
Q Consensus 339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TG---r~~~~a~~ia~~lgi~~~~~~~i~~ng~~ 399 (523)
|++.-.+.+-+++.++|++|+++|++++++|| |+........+.+|++...+.+++.++..
T Consensus 10 Gtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~ 73 (249)
T TIGR01457 10 GTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMAT 73 (249)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHH
Confidence 55555666677999999999999999999995 88998888899999987667777776653
No 153
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=94.97 E-value=0.084 Score=46.59 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=51.6
Q ss_pred HHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78 297 LSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTA 376 (523)
Q Consensus 297 ~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a 376 (523)
.+.+..+|++.+.+- + |.|++.. =..+..|+.++-+.+++++|++++++|--+...+
T Consensus 20 ~~~L~~~Gikgvi~D---l------------------DNTLv~w--d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV 76 (175)
T COG2179 20 PDILKAHGIKGVILD---L------------------DNTLVPW--DNPDATPELRAWLAELKEAGIKVVVVSNNKESRV 76 (175)
T ss_pred HHHHHHcCCcEEEEe---c------------------cCceecc--cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHH
Confidence 456788898877643 1 2233321 1234789999999999999999999999999999
Q ss_pred HHHHHHcCcc
Q psy78 377 ISVAKECGII 386 (523)
Q Consensus 377 ~~ia~~lgi~ 386 (523)
...++.+|++
T Consensus 77 ~~~~~~l~v~ 86 (175)
T COG2179 77 ARAAEKLGVP 86 (175)
T ss_pred HhhhhhcCCc
Confidence 9999999985
No 154
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=94.94 E-value=0.11 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.6
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCC
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGD 371 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr 371 (523)
-++.|++.++|++|+++|++++|+|+-
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 457899999999999999999999983
No 155
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=94.90 E-value=0.16 Score=47.18 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=27.9
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAI 377 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~ 377 (523)
++.|++.++|+.|+++|+++.++|.-+.....
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~ 115 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTT 115 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHH
Confidence 47899999999999999999999998765543
No 156
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=94.79 E-value=0.045 Score=53.18 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=42.1
Q ss_pred eeeeeeccC----CCcchHHHHHHHHhCCCcEEEEcCCCHhh---HHHHHHHcCccCCCCeE
Q psy78 338 LGLIILENR----LKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKECGIIDPGETV 392 (523)
Q Consensus 338 lG~i~~~d~----lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~---a~~ia~~lgi~~~~~~~ 392 (523)
=|++.-.++ +-|++.++|++|+++|++++++|||+..+ .....+++|++-..+.+
T Consensus 9 DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i 70 (257)
T TIGR01458 9 SGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEV 70 (257)
T ss_pred CCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHe
Confidence 355555566 88999999999999999999999988776 45556677886433333
No 157
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=94.77 E-value=0.22 Score=45.32 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCH
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNI 373 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~ 373 (523)
+.|++.++|++|+++|+++.++|.-+.
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 568999999999999999999997653
No 158
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.68 E-value=0.081 Score=49.57 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=26.0
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHh
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQ 374 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~ 374 (523)
-++.|++.++++.|+++|+++.++|..+..
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~ 122 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPT 122 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 357899999999999999999999986543
No 159
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=94.37 E-value=0.11 Score=49.80 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=32.2
Q ss_pred EcCChHhHHHHHHHHHHCC-------CEEEEEcCChhhHHHHHhC------CccEEecccC
Q psy78 472 ARMSSDQKQQLVLELQQLG-------YYVAMCGDGANDCGALRAA------HAGISLSEAE 519 (523)
Q Consensus 472 ~~~~p~~K~~~i~~L~~~~-------~~V~a~GDG~ND~~MLk~A------~vGIAMgna~ 519 (523)
.+..-.+|+.+++.+.+.. .-++++||...|-+|++.. |++|.++..+
T Consensus 159 vrp~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~ 219 (235)
T PF02358_consen 159 VRPPGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVS 219 (235)
T ss_dssp EE-TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES---
T ss_pred EEeCCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeec
Confidence 3333347999999999873 2589999999999999983 5677777653
No 160
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=94.28 E-value=0.28 Score=52.17 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=31.8
Q ss_pred hHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecc
Q psy78 476 SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSE 517 (523)
Q Consensus 476 p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgn 517 (523)
-++|...++..........+.||+.||.+||+.|+.+++.+.
T Consensus 174 Ge~Kv~rl~~~~g~~~~~~aYgDS~sD~plL~~a~e~y~V~~ 215 (497)
T PLN02177 174 GDHKRDAVLKEFGDALPDLGLGDRETDHDFMSICKEGYMVPR 215 (497)
T ss_pred cHHHHHHHHHHhCCCCceEEEECCccHHHHHHhCCccEEeCC
Confidence 357877776433221223899999999999999999999886
No 161
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=93.76 E-value=0.081 Score=45.15 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=29.0
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAI 377 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~ 377 (523)
+++.+++.+++++++++|+.++++|||+.....
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 457889999999999999999999999987654
No 162
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.75 E-value=0.28 Score=57.30 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
.+-|++.+.|+.|+++|+++.|+|+.....+....+.+|+.
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~ 201 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLP 201 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCC
Confidence 36799999999999999999999999999998888999884
No 163
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.64 E-value=0.29 Score=45.30 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++++.|++.= ..+++|---.+-+..+|..+|+.
T Consensus 83 ~lvPgA~etm~~l~~~~-tp~v~STSY~qy~~r~a~~ig~P 122 (315)
T COG4030 83 KLVPGAEETMATLQERW-TPVVISTSYTQYLRRTASMIGVP 122 (315)
T ss_pred ccCCChHHHHHHHhccC-CceEEeccHHHHHHHHHHhcCCC
Confidence 46799999999998874 44445544455677888888884
No 164
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=93.55 E-value=0.25 Score=45.11 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.+++.++|++|+ .+++++|..+...+....+.+|+.
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~ 121 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIE 121 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcH
Confidence 46789999999997 478999999998899999999985
No 165
>PRK10444 UMP phosphatase; Provisional
Probab=93.54 E-value=0.11 Score=50.22 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=45.2
Q ss_pred eeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc---CccCCCCeEE
Q psy78 338 LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC---GIIDPGETVV 393 (523)
Q Consensus 338 lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l---gi~~~~~~~i 393 (523)
=|++.-.+++-|++.++|++|+++|++++++|||+..+...+++++ |++-+.+.++
T Consensus 9 DGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ 67 (248)
T PRK10444 9 DGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFY 67 (248)
T ss_pred CCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEe
Confidence 4667777788999999999999999999999999998888777764 6754444443
No 166
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=93.35 E-value=0.25 Score=45.21 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
+.| ..+.|+.|++. ++..++||.+...+....+.+|+.
T Consensus 89 ~~~-~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~ 126 (188)
T PRK10725 89 PLP-LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLR 126 (188)
T ss_pred Ccc-HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcH
Confidence 344 46899999876 899999999999999999999985
No 167
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=93.34 E-value=0.24 Score=48.40 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=42.9
Q ss_pred CC-cchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78 347 LK-PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399 (523)
Q Consensus 347 lr-~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~ 399 (523)
+| |++.++|++|+++|++++++|+.+...+....+++|++..- ..+..+|..
T Consensus 146 irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF-dvIIs~Gdv 198 (301)
T TIGR01684 146 IRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF-DIIISGGHK 198 (301)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc-CEEEECCcc
Confidence 45 99999999999999999999999999999999999997422 345555543
No 168
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=93.28 E-value=0.2 Score=47.78 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=31.3
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH---HHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAIS---VAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~---ia~~lgi~ 386 (523)
+.-|++.+.++.++++|++|+++|||+...-.. =.++.|+.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~ 158 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFP 158 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCC
Confidence 456789999999999999999999998763222 24455654
No 169
>PHA02597 30.2 hypothetical protein; Provisional
Probab=93.19 E-value=0.38 Score=44.45 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=27.8
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++-|++.+++++|++++ +.+++|..+........+.+++.
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~ 113 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLN 113 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHH
Confidence 47899999999999985 56666765544444445566653
No 170
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=93.19 E-value=0.22 Score=56.96 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=38.5
Q ss_pred cchHHHHHHHH----hCCCcEEEEcCCCHhhHHHHHHHcCccC-CCCeEEEeecCCCCC
Q psy78 349 PQTEGVIKELK----DARVKVVMITGDNIQTAISVAKECGIID-PGETVVDVSAVPGGL 402 (523)
Q Consensus 349 ~~t~~aI~~Lk----~~Gi~vvi~TGr~~~~a~~ia~~lgi~~-~~~~~i~~ng~~~~~ 402 (523)
+..++.++.++ ...+.++++|||+...+..+.++.|+.. .-+.+|+..|..++.
T Consensus 787 ~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~vGTeIyy 845 (1050)
T TIGR02468 787 QIIKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICNSGSELYY 845 (1050)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeCCCcceec
Confidence 33344455565 2347899999999999999999999963 345667777766544
No 171
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=93.09 E-value=0.83 Score=44.92 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=36.7
Q ss_pred eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH---HHHHcCcc
Q psy78 339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS---VAKECGII 386 (523)
Q Consensus 339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~---ia~~lgi~ 386 (523)
|++.-.+..-+++.++|++|+++|++++++||++..+... -.+.+|++
T Consensus 11 Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~ 61 (279)
T TIGR01452 11 GVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFN 61 (279)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4555566777889999999999999999999987655444 34556764
No 172
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=92.98 E-value=0.078 Score=61.10 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=58.2
Q ss_pred hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCc
Q psy78 186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGS 265 (523)
Q Consensus 186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~ 265 (523)
+..++..++++++++||||||++++++++.++.+|+|+ ++++|+++++|.+|+
T Consensus 236 ~~~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~---------------------------~ilvk~~~~iE~lg~ 288 (917)
T TIGR01116 236 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKK---------------------------NAIVRKLPSVETLGC 288 (917)
T ss_pred HHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHC---------------------------CcEecCcHHHHhccC
Confidence 45667789999999999999999999999999999999 999999999999999
Q ss_pred eeEEeecc
Q psy78 266 INCVCFDK 273 (523)
Q Consensus 266 v~~v~fDK 273 (523)
++++||||
T Consensus 289 v~~ic~DK 296 (917)
T TIGR01116 289 TTVICSDK 296 (917)
T ss_pred ceEEEecC
Confidence 99999999
No 173
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=92.80 E-value=0.71 Score=53.85 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=48.6
Q ss_pred cchhHHHHHHHHHHhhheee-e-cCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78 40 ENYAVFSISMFQYIILAITF-S-QGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP 107 (523)
Q Consensus 40 ~nt~~Fl~s~~qyi~~~~v~-s-~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 107 (523)
.-|..|....+.++..++.- + ..++|+.+ ++|++++.++++.+++.++++..| .++.+|+..+++
T Consensus 892 ~~t~~f~~~v~~q~~~~~~~R~~~~~~f~~~-~~n~~l~~~~~~~~~l~~~~~~~p--~~~~~f~~~~l~ 958 (997)
T TIGR01106 892 CHTAFFVSIVVVQWADLIICKTRRNSVFQQG-MKNKILIFGLFEETALAAFLSYCP--GMGVALRMYPLK 958 (997)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcccccccC-CcCHHHHHHHHHHHHHHHHHHHhh--hhHHHhccccCC
Confidence 45778888888777776643 2 34568888 799999999888888877766644 467889987766
No 174
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=92.75 E-value=0.82 Score=40.48 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=31.1
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHH
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISV 379 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~i 379 (523)
|..++++.+..++++++|++++=+|+|+...+...
T Consensus 26 d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~T 60 (157)
T PF08235_consen 26 DWTHPGAAELYRKIADNGYKILYLTARPIGQANRT 60 (157)
T ss_pred hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHH
Confidence 68899999999999999999999999997765543
No 175
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=92.38 E-value=0.63 Score=43.84 Aligned_cols=39 Identities=5% Similarity=0.198 Sum_probs=33.1
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
-++.+++.++|+.| ++++.++|+.+...+....+.+|+.
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~ 125 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGML 125 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChH
Confidence 45678999999998 4999999999888888888888875
No 176
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=92.19 E-value=0.18 Score=41.27 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=36.9
Q ss_pred eeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH---HHHHcCccC
Q psy78 338 LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS---VAKECGIID 387 (523)
Q Consensus 338 lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~---ia~~lgi~~ 387 (523)
=|++...+++-|++.++|++|+++|.+++++|-.+..+... -.+.+|+.-
T Consensus 6 dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 6 DGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp TTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred ccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 46666778899999999999999999999999776555433 346678764
No 177
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=92.10 E-value=1.2 Score=43.29 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=80.7
Q ss_pred cCCCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEE--ecCcc---hh
Q psy78 345 NRLKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFT--VSGVS---AI 418 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~--~~~~~---~~ 418 (523)
..+.++..++|++|..+ ...++|+|||+.........-.+ -.++..||.........-.... ..... .+
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~-----i~l~aehGa~~r~~~g~~~~~~~~~~~~~~~~~v 113 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPG-----IGLIAEHGAEVRDPNGKWWINLAEEADLRWLKEV 113 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCC-----ccEEEecceEEecCCCCeeEecCHHHHhhHHHHH
Confidence 34788999999999998 44799999999998877655322 2456666655422211111100 00000 00
Q ss_pred hhhhhhcccCchhhhhccCCCceEEEEe----cccHH---HHHh---hCcch-HhhhhcccEEEEcCChHhHHHHHHHHH
Q psy78 419 QTKAKKLNYSKTEEELGLSSGAYKFAVT----GKSWE---LIRD---QMPEL-IPRIIVKGAIFARMSSDQKQQLVLELQ 487 (523)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~----~~~~~---~l~~---~~~~~-~~~~~~~~~v~~~~~p~~K~~~i~~L~ 487 (523)
....+........ ...+.....+... .++.. .+.. ..... ..-...+..+.++.+-.+|+.+++.+.
T Consensus 114 ~~~l~~~v~r~pG--s~iE~K~~a~~~Hyr~a~~~~~~~~a~~~~~~~~~~~~~~v~~gk~vVEvrp~~~~KG~a~~~i~ 191 (266)
T COG1877 114 AAILEYYVERTPG--SYIERKGFAVALHYRNAEDDEGAALALAEAATLINELKLRVTPGKMVVELRPPGVSKGAAIKYIM 191 (266)
T ss_pred HHHHHHHhhcCCC--eEEEEcCcEEEEeeccCCchhhHHHHHHHHHhccccccEEEEeCceEEEEeeCCcchHHHHHHHH
Confidence 0000000000000 0011111111111 01100 0000 00001 111122344556666668999999888
Q ss_pred HC----CCEEEEEcCChhhHHHHHhCC
Q psy78 488 QL----GYYVAMCGDGANDCGALRAAH 510 (523)
Q Consensus 488 ~~----~~~V~a~GDG~ND~~MLk~A~ 510 (523)
+. +..+++.||-.-|-.|++..+
T Consensus 192 ~~~~~~~~~~~~aGDD~TDE~~F~~v~ 218 (266)
T COG1877 192 DELPFDGRFPIFAGDDLTDEDAFAAVN 218 (266)
T ss_pred hcCCCCCCcceecCCCCccHHHHHhhc
Confidence 86 335899999999999999987
No 178
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=91.76 E-value=0.44 Score=45.11 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=39.3
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
.++.|++.+.++.|+++|+.+.++|+.+...+..+.+.+|+.
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~ 126 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL 126 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh
Confidence 468899999999999999999999999999999999999986
No 179
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=91.62 E-value=1 Score=40.51 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=36.3
Q ss_pred ccCCCcchHHHHHHHHhCCCc--EEEEcCC-------CHhhHHHHHHHcCcc
Q psy78 344 ENRLKPQTEGVIKELKDARVK--VVMITGD-------NIQTAISVAKECGII 386 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~--vvi~TGr-------~~~~a~~ia~~lgi~ 386 (523)
++++.++..+.+++|++.+.. ++|+|-- ....|..+.+.+|+.
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp 108 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP 108 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc
Confidence 567889999999999999874 9999975 367788899999974
No 180
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=91.54 E-value=0.68 Score=53.67 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=44.7
Q ss_pred CCccchhHHHHHHHHHHhhheee---ecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78 37 SCYENYAVFSISMFQYIILAITF---SQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP 107 (523)
Q Consensus 37 ~~~~nt~~Fl~s~~qyi~~~~v~---s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 107 (523)
....+|..|..-.|.++...+.- +.+.+|+ ++++|++|+.++++.+++.+.++ ++++..|++.+++
T Consensus 846 ~~~~~t~~f~~~v~~~~~~~~~~r~~~~~~~~~-~~~~n~~~~~~~~~~~~l~~~~~----~~~~~~f~~~~l~ 914 (941)
T TIGR01517 846 QGELNTIVFNTFVLLQLFNEINARKLYERNVFE-GLFKNRIFVTIMGFTFGFQVIIV----EFGGSFFSTVSLS 914 (941)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHccCCcccccc-cccccHHHHHHHHHHHHHHHHHH----HHHHHHhcccCCC
Confidence 46678999977666666655443 2234565 88999998888877777664433 2567888887654
No 181
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=91.01 E-value=0.51 Score=46.16 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=41.1
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399 (523)
Q Consensus 348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~ 399 (523)
.|++.++|++|+++|+++.++|+.+...+....+.+|+...- .++..+|..
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF-DvII~~g~i 200 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF-DIIICGGRK 200 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc-cEEEECCCc
Confidence 399999999999999999999988888888999999996432 244455443
No 182
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=90.66 E-value=0.72 Score=53.20 Aligned_cols=69 Identities=16% Similarity=0.366 Sum_probs=55.2
Q ss_pred cCCccchhHHHHHHHHHHhhheeeecCCCcccc-cccchhHHHHHHHHHHHhhheeecCchHHHHhccccC
Q psy78 36 YSCYENYAVFSISMFQYIILAITFSQGKPYRTP-IYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRF 105 (523)
Q Consensus 36 ~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~-~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (523)
.....+++.+.++.+|.+.++.+.+.++||++. +++|+++..++++..++.+...+.|.... ..|+..+
T Consensus 816 ~~~~~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~-~~f~~~~ 885 (917)
T COG0474 816 QALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNL-KIFQPTP 885 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHh-hhccCCC
Confidence 455677777888888999999999999999988 59999999999999999888777665432 4555543
No 183
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=90.14 E-value=1 Score=51.63 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHHHHH
Q psy78 41 NYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAI 120 (523)
Q Consensus 41 nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~~~~ 120 (523)
.|..|+...+-++...+..-.. |.|+|+|+++...+++.+++.+..+..|.-+++.+|.+.++|. .+...++.+.+
T Consensus 772 ~t~~f~~~~~~~~~~~~~~R~~---~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~-~~~~~~~~~~~ 847 (867)
T TIGR01524 772 QSGWFVVGLLSQTLVVHMIRTE---KIPFIQSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPL-SYFPWLIAILV 847 (867)
T ss_pred HHHHHHHHHHHHHHHHHhhCcC---CCCcCcchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCc-cHHHHHHHHHH
Confidence 4667887777666665544322 3477889999988888888887777666645678899887763 44444444433
No 184
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=90.01 E-value=1.8 Score=41.93 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.2
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHh
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQ 374 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~ 374 (523)
+.+.-|++.+..+.++++|++|+++|||...
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~ 173 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKD 173 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 3456789999999999999999999999864
No 185
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=89.77 E-value=0.22 Score=58.08 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=57.8
Q ss_pred HHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCce
Q psy78 187 WDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSI 266 (523)
Q Consensus 187 ~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v 266 (523)
.+.+.++++++|+++|+|||+++|++++.|++||+|+ ++++|+..++|.+|.+
T Consensus 307 ~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~---------------------------~~lVr~L~avEtLG~v 359 (1053)
T TIGR01523 307 KEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKR---------------------------NVIVRKLDALEALGAV 359 (1053)
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhc---------------------------CCEeccchhhhhccCc
Confidence 4677889999999999999999999999999999999 9999999999999999
Q ss_pred eEEeecc
Q psy78 267 NCVCFDK 273 (523)
Q Consensus 267 ~~v~fDK 273 (523)
+++|+||
T Consensus 360 tvICsDK 366 (1053)
T TIGR01523 360 NDICSDK 366 (1053)
T ss_pred cEEEecC
Confidence 9999999
No 186
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=88.68 E-value=3.1 Score=37.85 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHC---CCEEEEEcCChhhHHHHHhCCcc
Q psy78 478 QKQQLVLELQQL---GYYVAMCGDGANDCGALRAAHAG 512 (523)
Q Consensus 478 ~K~~~i~~L~~~---~~~V~a~GDG~ND~~MLk~A~vG 512 (523)
..+.+.+.+.++ .....++||...|+.+=..||++
T Consensus 107 ~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 107 KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 457777777776 47789999999999998888876
No 187
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=87.89 E-value=2.1 Score=38.51 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=31.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEc-CCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMIT-GDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~T-Gr~~~~a~~ia~~lgi~ 386 (523)
.+-|++.++|+.|+++|+++.+|| -+.+..|+.+.+.+++.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 367999999999999999999999 46788999999999986
No 188
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=87.54 E-value=3.2 Score=39.63 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=24.5
Q ss_pred CCCEEEEEcCC-hhhHHHHHhCCccEEeccc
Q psy78 489 LGYYVAMCGDG-ANDCGALRAAHAGISLSEA 518 (523)
Q Consensus 489 ~~~~V~a~GDG-~ND~~MLk~A~vGIAMgna 518 (523)
..+++++|||+ ..|+.+=+.||+-.+..+.
T Consensus 179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 179 PIGEILHVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 36789999999 6999999999987665553
No 189
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=86.66 E-value=11 Score=43.43 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=35.9
Q ss_pred CCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78 347 LKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~ 399 (523)
+.+++.++|++|.+. +..|+|+|||+..........+++ .++..||..
T Consensus 623 p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L-----~LaAEHG~~ 671 (934)
T PLN03064 623 LHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDM-----WLAAENGMF 671 (934)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCc-----eEEeeCCeE
Confidence 557889999999876 678999999999988776654432 345555544
No 190
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=86.57 E-value=1.8 Score=38.73 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=29.1
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHH----HHHHHcCc
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAI----SVAKECGI 385 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~----~ia~~lgi 385 (523)
+++-+++.|..=++.|=.++.+|||.+.... .+++...|
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i 157 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHI 157 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhccc
Confidence 4566788888889999999999999876443 44444445
No 191
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=86.29 E-value=14 Score=42.18 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78 347 LKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~ 399 (523)
+.++..++|++|.+. +..|+|+|||+..........++ -.++..||..
T Consensus 533 p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~-----l~l~aeHG~~ 581 (797)
T PLN03063 533 LHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN-----IWLAAENGMF 581 (797)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC-----CcEEEeCCEE
Confidence 677899999999876 77899999999998877654332 2345555544
No 192
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=85.89 E-value=2.9 Score=48.25 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHHHHHH
Q psy78 42 YAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAIC 121 (523)
Q Consensus 42 t~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~~~~~ 121 (523)
|+.|....+-++...+..=. .|.|+++|++....+++.+++.+..+..|.++++.+|++.++|. .+...++++.+.
T Consensus 808 ~~~F~~~~~~q~~~~~~~R~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~-~~~~~~~~~~~~ 883 (902)
T PRK10517 808 SGWFVVGLLSQTLIVHMIRT---RRIPFIQSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPL-SYFPWLVAILAG 883 (902)
T ss_pred HHHHHHHHHHHHHHHHhhcc---CCCCcccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCCh-hHHHHHHHHHHH
Confidence 45577776666655543322 14488999999888888888888777778778889999988773 454444444443
No 193
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=84.42 E-value=5.3 Score=37.51 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=36.8
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
.-+..+++.+++++++++ +++.++|--.........+++|+..
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~ 139 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLD 139 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChh
Confidence 346789999999999999 9999999877777888899999753
No 194
>KOG4383|consensus
Probab=84.22 E-value=2.2 Score=45.80 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=51.1
Q ss_pred ccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 333 ~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
++-.|.|++.++-+.+.+....|+.|-++-|+.+-.|-.+....+-+|+++|+..
T Consensus 813 sGQIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEa 867 (1354)
T KOG4383|consen 813 SGQIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEA 867 (1354)
T ss_pred ccchhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhcccc
Confidence 5667899999999999999999999999999999999999999999999999964
No 195
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=82.46 E-value=2.5 Score=40.41 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=41.6
Q ss_pred eeeeeccCCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHH-cCccCCCCeE
Q psy78 339 GLIILENRLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKE-CGIIDPGETV 392 (523)
Q Consensus 339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~-lgi~~~~~~~ 392 (523)
|++.-.+.+-+++.++|+.++++|++++++| ||+.........+ +|+....+.+
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~i 64 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQI 64 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHe
Confidence 5555566777899999999999999999998 8888877666666 7875433333
No 196
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=81.39 E-value=4.6 Score=43.30 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=30.9
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCH------------hhHHHHHHHcCc
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNI------------QTAISVAKECGI 385 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~------------~~a~~ia~~lgi 385 (523)
+-|++.++|++|+++|++++|+|.-+. ..+..+.+++|+
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi 248 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV 248 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 469999999999999999999997544 235566666665
No 197
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=80.43 E-value=5.5 Score=46.00 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78 41 NYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP 107 (523)
Q Consensus 41 nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 107 (523)
.|..|....+-++...+..=.. |.|+++|++....+++.+++.+..+..|..+++.+|++.++|
T Consensus 807 ~t~~f~~l~~~q~~~~~~~R~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~ 870 (903)
T PRK15122 807 QSGWFIEGLLSQTLVVHMLRTQ---KIPFIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLP 870 (903)
T ss_pred HHHHHHHHHHHHHHHHHhhCcC---CCCcCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCC
Confidence 4667888777776665544222 347788988777676666666666656655678899988776
No 198
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=80.14 E-value=7.4 Score=44.95 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=47.4
Q ss_pred cchhHHHHHHHHHHhhheeeec--CCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78 40 ENYAVFSISMFQYIILAITFSQ--GKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP 107 (523)
Q Consensus 40 ~nt~~Fl~s~~qyi~~~~v~s~--G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 107 (523)
..|..|..-.+.++...+..-. ...|+..+++|++|...+++.+++.+.++.. |.++.+|+..+++
T Consensus 788 ~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--p~~~~~f~~~~l~ 855 (884)
T TIGR01522 788 DTTMTFTCFVFFDMFNALACRSQTKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYF--PPLQSVFQTEALS 855 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccccccCcccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCCCC
Confidence 4578888888877777666532 3448878899999988888877776655543 4567889887654
No 199
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=78.12 E-value=1.5 Score=39.30 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=38.2
Q ss_pred eeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 342 ILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 342 ~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
.+.=..||++.+.++.|.+. +.+++.|--+...|..+.+.++..
T Consensus 38 ~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 38 PVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRG 81 (162)
T ss_pred EEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcC
Confidence 33445899999999999988 999999999999999999988763
No 200
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=77.22 E-value=4.8 Score=34.04 Aligned_cols=81 Identities=22% Similarity=0.305 Sum_probs=58.5
Q ss_pred HHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC-c-EEEEcCCCHhhH
Q psy78 299 EYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV-K-VVMITGDNIQTA 376 (523)
Q Consensus 299 ~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi-~-vvi~TGr~~~~a 376 (523)
-+...|++|+.++.. .+.+. .-....+.+-.++++-.......+..++.+++|+++|. + .+++-|+.+..-
T Consensus 22 ~l~~~G~~vi~lG~~-vp~e~------~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 22 ALRDAGFEVIYTGLR-QTPEE------IVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHCCCEEEECCCC-CCHHH------HHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 468899999887754 22221 11222356778888888888888999999999999977 3 467777777655
Q ss_pred HHHHHHcCcc
Q psy78 377 ISVAKECGII 386 (523)
Q Consensus 377 ~~ia~~lgi~ 386 (523)
..-+++.|++
T Consensus 95 ~~~~~~~G~d 104 (122)
T cd02071 95 YELLKEMGVA 104 (122)
T ss_pred HHHHHHCCCC
Confidence 6677789986
No 201
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=77.01 E-value=23 Score=35.87 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=35.1
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc-C
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC-G 384 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l-g 384 (523)
..|++.+++++|+++|+++.++|+-+...+..+.+.+ |
T Consensus 185 ~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 185 RDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred cchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999986 6
No 202
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=74.99 E-value=4.8 Score=36.12 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=27.6
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
++.|++.++|+ ++.++|.-+........+.+|+.
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~ 123 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLP 123 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCH
Confidence 57889999988 36788988888888888888874
No 203
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.49 E-value=11 Score=31.46 Aligned_cols=82 Identities=26% Similarity=0.373 Sum_probs=58.3
Q ss_pred HHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC-c-EEEEcCCCHhh
Q psy78 298 SEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV-K-VVMITGDNIQT 375 (523)
Q Consensus 298 ~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi-~-vvi~TGr~~~~ 375 (523)
..+...|++|+-++.. .+.+. ....-.+.+-.++|+-....+--+.+++.++.+|+.+- . .+++-|.+...
T Consensus 21 ~~l~~~G~~V~~lg~~-~~~~~------l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 21 RALRDAGFEVIDLGVD-VPPEE------IVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHCCCEEEECCCC-CCHHH------HHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 3467899999777732 33221 11122456678888888877777999999999999976 4 47788877665
Q ss_pred HHHHHHHcCcc
Q psy78 376 AISVAKECGII 386 (523)
Q Consensus 376 a~~ia~~lgi~ 386 (523)
....+++.|.|
T Consensus 94 ~~~~~~~~G~D 104 (119)
T cd02067 94 DFKFLKEIGVD 104 (119)
T ss_pred hHHHHHHcCCe
Confidence 55688899986
No 204
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=74.29 E-value=24 Score=34.09 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHH---HcCcc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK---ECGII 386 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~---~lgi~ 386 (523)
.+-++..+.|+.++++|+.+.-+|.|++......++ ++|++
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 356799999999999999999999999876655444 46775
No 205
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=72.40 E-value=5.3 Score=38.90 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=38.6
Q ss_pred eeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78 337 FLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC 383 (523)
Q Consensus 337 ~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l 383 (523)
+=|++..-++.=|++.++|++|+++|++++++|-.+..+...+++++
T Consensus 15 lDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 15 LDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred CcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 55788888899999999999999999999999977766665444443
No 206
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=71.08 E-value=29 Score=32.98 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=33.0
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhh----HHHHHHHcCcc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQT----AISVAKECGII 386 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~----a~~ia~~lgi~ 386 (523)
.+.-|++.+.++..-++|.+|.-+|-|.... ...=.++.|+.
T Consensus 121 sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~ 166 (274)
T COG2503 121 SKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLP 166 (274)
T ss_pred cccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcc
Confidence 3456899999999999999999999998765 23334556664
No 207
>KOG3040|consensus
Probab=69.18 E-value=9.8 Score=35.13 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=43.0
Q ss_pred ceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHH---HHHcCccCC
Q psy78 335 LEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISV---AKECGIIDP 388 (523)
Q Consensus 335 l~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~i---a~~lgi~~~ 388 (523)
+.+-|++..++..-|++.+|+++|+.++.+|..+|--...+-..+ .+.||++-.
T Consensus 12 lDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~ 68 (262)
T KOG3040|consen 12 LDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVS 68 (262)
T ss_pred EeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCcc
Confidence 356689999999999999999999999999999987666555444 455677643
No 208
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=65.84 E-value=17 Score=31.47 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=57.9
Q ss_pred HHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC--cEEEEcCCC----
Q psy78 299 EYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV--KVVMITGDN---- 372 (523)
Q Consensus 299 ~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi--~vvi~TGr~---- 372 (523)
.+..+|++|+-++...-.++ .-+.-.+.+-.++|+-.+...-.+..++.+++|+++|. ..+++-|..
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~-------i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~ 98 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEE-------FIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGK 98 (137)
T ss_pred HHHHCCCEEEECCCCCCHHH-------HHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCc
Confidence 46789999998885443222 12223456778888888888888999999999999965 246677765
Q ss_pred --HhhHHHHHHHcCcc
Q psy78 373 --IQTAISVAKECGII 386 (523)
Q Consensus 373 --~~~a~~ia~~lgi~ 386 (523)
+....+-++++|++
T Consensus 99 ~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 99 HDFEEVEKKFKEMGFD 114 (137)
T ss_pred cChHHHHHHHHHcCCC
Confidence 34455778889975
No 209
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=64.93 E-value=8.8 Score=37.15 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=23.9
Q ss_pred HHHHHHHCCCEEEEEcCCh-hhHHHHHhCCccE
Q psy78 482 LVLELQQLGYYVAMCGDGA-NDCGALRAAHAGI 513 (523)
Q Consensus 482 ~i~~L~~~~~~V~a~GDG~-ND~~MLk~A~vGI 513 (523)
+++.+....+++++|||.. +|+.+=+.+|+--
T Consensus 188 ~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~ 220 (257)
T TIGR01458 188 ALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRG 220 (257)
T ss_pred HHHHhCCChhhEEEECCCcHHHHHHHHHcCCeE
Confidence 3344433468899999995 9999999998643
No 210
>PLN03190 aminophospholipid translocase; Provisional
Probab=62.88 E-value=7.8 Score=45.97 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=48.0
Q ss_pred HHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeEE
Q psy78 190 VIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCV 269 (523)
Q Consensus 190 ~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~v 269 (523)
+...+.++-..+|.+|+..+.+....-...+.+. ++|.= .+. .....+++.+..|.+|+|++|
T Consensus 394 f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D----------~~m~~-----~~~--~~~~~vr~snl~EeLGqV~yI 456 (1178)
T PLN03190 394 FLMSVIVFQIMIPISLYISMELVRVGQAYFMIRD----------DQMYD-----EAS--NSRFQCRALNINEDLGQIKYV 456 (1178)
T ss_pred HHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhh----------hhccc-----ccC--CCcceeccCcchhhhccceEE
Confidence 3444555568999999999999995546666665 22221 000 114678999999999999999
Q ss_pred eecc
Q psy78 270 CFDK 273 (523)
Q Consensus 270 ~fDK 273 (523)
|.||
T Consensus 457 fSDK 460 (1178)
T PLN03190 457 FSDK 460 (1178)
T ss_pred EEcC
Confidence 9999
No 211
>PTZ00445 p36-lilke protein; Provisional
Probab=60.90 E-value=16 Score=34.09 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhhccCeEEEEEEecCCch-hHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEE
Q psy78 290 PENIVSVLSEYTEQGYRVIALASRTLSIE-DYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMI 368 (523)
Q Consensus 290 ~~~~~~~~~~~~~~G~r~l~~a~k~l~~~-~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~ 368 (523)
.+..+...+.+.+.|.|+++.-.-.--.. ....+. +. .+|. ..+-..++|+.+.-+++|++.|++++++
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~--~~---~~~~-----~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITKHSGGYI--DP---DNDD-----IRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhhhccccc--CC---Ccch-----hhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 45566677789999999987542110000 000000 00 0011 1122357999999999999999999999
Q ss_pred cCCCH
Q psy78 369 TGDNI 373 (523)
Q Consensus 369 TGr~~ 373 (523)
|=-..
T Consensus 98 TfSd~ 102 (219)
T PTZ00445 98 TFSDK 102 (219)
T ss_pred Eccch
Confidence 95544
No 212
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=57.98 E-value=34 Score=29.41 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=57.8
Q ss_pred HHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC-cE-EEEcCCCHhh
Q psy78 298 SEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV-KV-VMITGDNIQT 375 (523)
Q Consensus 298 ~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi-~v-vi~TGr~~~~ 375 (523)
..+...|++|+-.+...-.++. -....+.+-..+|+-++...-.+..++.+++|+++|. .+ +++-|-.+..
T Consensus 24 ~~l~~~GfeVi~lg~~~s~e~~-------v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~ 96 (132)
T TIGR00640 24 TAYADLGFDVDVGPLFQTPEEI-------ARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQ 96 (132)
T ss_pred HHHHhCCcEEEECCCCCCHHHH-------HHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChH
Confidence 4567889999877644222221 1123467889999999998888999999999999986 33 5555555554
Q ss_pred HHHHHHHcCcc
Q psy78 376 AISVAKECGII 386 (523)
Q Consensus 376 a~~ia~~lgi~ 386 (523)
-..-.+++|++
T Consensus 97 ~~~~l~~~Gvd 107 (132)
T TIGR00640 97 DFDELKEMGVA 107 (132)
T ss_pred hHHHHHHCCCC
Confidence 45668889986
No 213
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=57.71 E-value=15 Score=30.74 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=48.0
Q ss_pred HHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCc-EEEEcCCC
Q psy78 294 VSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVK-VVMITGDN 372 (523)
Q Consensus 294 ~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~-vvi~TGr~ 372 (523)
...+..+.+.|+++..+.-+.-.......+......--.-|+-.+. ...+.+.+.++++.+.|++ +|+.+|..
T Consensus 17 ~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~------~~~~~~~~~v~~~~~~g~~~v~~~~g~~ 90 (116)
T PF13380_consen 17 YRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVC------VPPDKVPEIVDEAAALGVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-------S-HHHHHHHHHHHHHHT-SEEEE-TTS-
T ss_pred HHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEE------cCHHHHHHHHHHHHHcCCCEEEEEcchH
Confidence 4566777779999888764442111111111011000122333222 3467889999999999995 78899988
Q ss_pred HhhHHHHHHHcCcc
Q psy78 373 IQTAISVAKECGII 386 (523)
Q Consensus 373 ~~~a~~ia~~lgi~ 386 (523)
...+...+++.|+.
T Consensus 91 ~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 91 SEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHcCCE
Confidence 88899999998873
No 214
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=57.27 E-value=27 Score=33.44 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=34.5
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCe
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGET 391 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~ 391 (523)
-.+|+++.+.++.|++.+|.+.|.|+.--.-...+.++-|...++-.
T Consensus 89 i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~ 135 (246)
T PF05822_consen 89 IMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVK 135 (246)
T ss_dssp --B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEE
T ss_pred hhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeE
Confidence 35899999999999999999999999888888888888876554433
No 215
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=56.49 E-value=21 Score=32.96 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=57.6
Q ss_pred HHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCc---EEEEcCCCHh
Q psy78 298 SEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVK---VVMITGDNIQ 374 (523)
Q Consensus 298 ~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~---vvi~TGr~~~ 374 (523)
.-+...|++|+-+|... +.+. .-..-.+.+-.++|+-.....-.+..++.++.++++|.. .+++-|+...
T Consensus 106 ~~l~~~G~~vi~LG~~v-p~e~------~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~ 178 (197)
T TIGR02370 106 TMLRANGFDVIDLGRDV-PIDT------VVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVT 178 (197)
T ss_pred HHHHhCCcEEEECCCCC-CHHH------HHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcC
Confidence 34678999999887332 2221 111123456788888888888889999999999999874 5677777663
Q ss_pred hHHHHHHHcCccC
Q psy78 375 TAISVAKECGIID 387 (523)
Q Consensus 375 ~a~~ia~~lgi~~ 387 (523)
..+++++|-|.
T Consensus 179 --~~~~~~~gad~ 189 (197)
T TIGR02370 179 --QDWADKIGADV 189 (197)
T ss_pred --HHHHHHhCCcE
Confidence 46888998763
No 216
>KOG0202|consensus
Probab=52.99 E-value=15 Score=40.96 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=35.2
Q ss_pred cCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCC
Q psy78 61 QGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFP 106 (523)
Q Consensus 61 ~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (523)
...=|+-|+|+|++|++++.+.++..+.++-.|+ ++..|++.++
T Consensus 897 ~~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~--l~~iFq~~~l 940 (972)
T KOG0202|consen 897 NKSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPP--LQRIFQTEPL 940 (972)
T ss_pred CcceEEecccccHHHHHHHHHHHHhhheEEEech--hhhhheecCC
Confidence 3566889999999999999999888877666554 6777888654
No 217
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=52.95 E-value=23 Score=29.55 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=31.2
Q ss_pred eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCc
Q psy78 343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385 (523)
Q Consensus 343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi 385 (523)
-..--.+++.++++.++++|++++.+|++.. ..+.+++.|.
T Consensus 51 S~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~ 91 (119)
T cd05017 51 SYSGNTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGV 91 (119)
T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCC
Confidence 3444678999999999999999999998764 4455655543
No 218
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=51.67 E-value=20 Score=34.20 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=20.4
Q ss_pred CCEEEEEcCC-hhhHHHHHhCCccE
Q psy78 490 GYYVAMCGDG-ANDCGALRAAHAGI 513 (523)
Q Consensus 490 ~~~V~a~GDG-~ND~~MLk~A~vGI 513 (523)
.++++|+||. .+|+.+=+.||+-.
T Consensus 213 ~~~~~~vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 213 KNRMLMVGDSFYTDILGANRLGIDT 237 (242)
T ss_pred cccEEEECCCcHHHHHHHHHCCCeE
Confidence 3579999999 69999999998754
No 219
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.27 E-value=56 Score=28.17 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=54.8
Q ss_pred HHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC--cEEEEcCCCH---
Q psy78 299 EYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV--KVVMITGDNI--- 373 (523)
Q Consensus 299 ~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi--~vvi~TGr~~--- 373 (523)
.+...|++|+-++...-.++.. ....+.+-.++|+-.+--.=-+..++.+++|+++|. .++++-|-..
T Consensus 24 ~l~~~GfeVi~LG~~v~~e~~v-------~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~ 96 (134)
T TIGR01501 24 AFTNAGFNVVNLGVLSPQEEFI-------KAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGK 96 (134)
T ss_pred HHHHCCCEEEECCCCCCHHHHH-------HHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcCh
Confidence 4678999999888654433321 122355777888877777767788899999999987 4566777532
Q ss_pred hh---HHHHHHHcCcc
Q psy78 374 QT---AISVAKECGII 386 (523)
Q Consensus 374 ~~---a~~ia~~lgi~ 386 (523)
.. ..+-++++|++
T Consensus 97 ~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 97 QDFPDVEKRFKEMGFD 112 (134)
T ss_pred hhhHHHHHHHHHcCCC
Confidence 11 23457889975
No 220
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=51.12 E-value=12 Score=34.35 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHh
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQ 374 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~ 374 (523)
++-|++.+++++|.+.|..++++|+|+..
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 46689999999999999999999999765
No 221
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=50.58 E-value=14 Score=27.90 Aligned_cols=30 Identities=27% Similarity=0.205 Sum_probs=23.4
Q ss_pred HHHHHHCCCEEEEEcCC-hhhHHHHHhCCcc
Q psy78 483 VLELQQLGYYVAMCGDG-ANDCGALRAAHAG 512 (523)
Q Consensus 483 i~~L~~~~~~V~a~GDG-~ND~~MLk~A~vG 512 (523)
++.+.-..+++++|||. ..|+.+=+.+|+-
T Consensus 14 ~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~ 44 (75)
T PF13242_consen 14 LKRLGVDPSRCVMVGDSLETDIEAAKAAGID 44 (75)
T ss_dssp HHHHTSGGGGEEEEESSTTTHHHHHHHTTSE
T ss_pred HHHcCCCHHHEEEEcCCcHhHHHHHHHcCCc
Confidence 33343336789999999 9999999999964
No 222
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=50.31 E-value=5.3 Score=37.35 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=37.2
Q ss_pred EEcCChH--hHHHHHHHHHHC-CCEEEEEcC----ChhhHHHHHhCCc-cEEecc
Q psy78 471 FARMSSD--QKQQLVLELQQL-GYYVAMCGD----GANDCGALRAAHA-GISLSE 517 (523)
Q Consensus 471 ~~~~~p~--~K~~~i~~L~~~-~~~V~a~GD----G~ND~~MLk~A~v-GIAMgn 517 (523)
..++.|. +|..+++.|.+. -+++..||| |.||-|.+..+++ |+++.+
T Consensus 153 SiDvfp~GwDKty~Lr~l~~~~~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~ 207 (220)
T PF03332_consen 153 SIDVFPKGWDKTYCLRHLEDEGFDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTS 207 (220)
T ss_dssp EEEEEETT-SGGGGGGGTTTTT-SEEEEEESS-STTSTTHHHHHSTTSEEEE-SS
T ss_pred EEccccCCccHHHHHHHHHhcccceEEEEehhccCCCCCceeeecCCccEEEeCC
Confidence 4456676 899999999885 578999999 8999999998765 877765
No 223
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=49.33 E-value=26 Score=31.09 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=37.8
Q ss_pred eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78 343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 386 (523)
Q Consensus 343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~ 386 (523)
..-++||++.+.+++|++. +++++.|.-+...|..+.+.++..
T Consensus 55 ~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred EEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcC
Confidence 3445899999999999955 999999999999999999999865
No 224
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.88 E-value=55 Score=28.00 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=56.2
Q ss_pred HHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC-cE-EEEcCCCH---
Q psy78 299 EYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV-KV-VMITGDNI--- 373 (523)
Q Consensus 299 ~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi-~v-vi~TGr~~--- 373 (523)
.+...|+.|+-++...-.++.. ....+.+-.++|+-++.-.=-+..+++++.|+++|. .+ +++-|-..
T Consensus 22 ~L~~~GfeVidLG~~v~~e~~v-------~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~ 94 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQEEFI-------DAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGK 94 (128)
T ss_pred HHHHCCCEEEECCCCCCHHHHH-------HHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCCh
Confidence 4567999999888554333211 223456788899888888878889999999999997 55 55566532
Q ss_pred ---hhHHHHHHHcCcc
Q psy78 374 ---QTAISVAKECGII 386 (523)
Q Consensus 374 ---~~a~~ia~~lgi~ 386 (523)
.....-++++|++
T Consensus 95 ~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 95 QDFEDVEKRFKEMGFD 110 (128)
T ss_pred hhhHHHHHHHHHcCCC
Confidence 2234568889985
No 225
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=47.61 E-value=49 Score=28.16 Aligned_cols=57 Identities=16% Similarity=0.399 Sum_probs=38.3
Q ss_pred cchhHHHHHHHHHHHhhhe--eecCchHHHHhccccCCCCCchHHHHHHHHHHHHHHHHH
Q psy78 71 KNKLFILSIIIMTWVCIYI--TLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLF 128 (523)
Q Consensus 71 ~N~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~f~~~l~~~~~~~~~~~~~ 128 (523)
+-+.|..+++..+++.+|+ .+-|.+++.. +++...|+..|-..+=+++++.++.+++
T Consensus 4 e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~-lgity~P~kyWAlaiP~~~l~~~l~~~~ 62 (126)
T PF08510_consen 4 EYYGFVLYILSTVAFVLYLLWAFLPDEWLHS-LGITYYPDKYWALAIPSWLLMAMLFTYV 62 (126)
T ss_pred eeeehHHHHHHHHHHHHHHHHHhcCHHHHHh-cCccccCcchHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777664 4668888876 7888899877766555555554443333
No 226
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=47.46 E-value=43 Score=25.29 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=35.2
Q ss_pred ccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHH
Q psy78 303 QGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE 382 (523)
Q Consensus 303 ~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~ 382 (523)
+|.|++.-|.|+..+. +-...+|.++++.--..+|++|..+.++..+|.+
T Consensus 2 ~g~rVli~GgR~~~D~------------------------------~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~ 51 (71)
T PF10686_consen 2 EGMRVLITGGRDWTDH------------------------------ELIWAALDKVHARHPDMVLVHGGAPKGADRIAAR 51 (71)
T ss_pred CCCEEEEEECCccccH------------------------------HHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 5888888888776532 1256778777777666779999887776665543
No 227
>KOG2914|consensus
Probab=47.30 E-value=84 Score=29.69 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC 383 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l 383 (523)
.+.|++.+-++.|++.|+.+.++|+++..+...-....
T Consensus 92 ~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~ 129 (222)
T KOG2914|consen 92 ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRH 129 (222)
T ss_pred ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh
Confidence 45679999999999999999999999777665443333
No 228
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.15 E-value=17 Score=30.46 Aligned_cols=34 Identities=21% Similarity=0.086 Sum_probs=27.6
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS 378 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ 378 (523)
..-.+++.++++.++++|.+++.+|+.+......
T Consensus 56 sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 56 SGETADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 4456789999999999999999999987654433
No 229
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=44.38 E-value=19 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=28.8
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS 378 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ 378 (523)
..--.+++.++++.+|++|.+++.+|+........
T Consensus 56 ~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (120)
T cd05710 56 HSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAK 90 (120)
T ss_pred CCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHH
Confidence 34467899999999999999999999987765433
No 230
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=43.33 E-value=17 Score=30.55 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=29.1
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHH
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISV 379 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~i 379 (523)
..--.+++.++++.+|++|++++.+|+.+.......
T Consensus 56 ~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 56 NSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKL 91 (128)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhh
Confidence 334678999999999999999999999876654443
No 231
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.58 E-value=52 Score=30.45 Aligned_cols=80 Identities=30% Similarity=0.422 Sum_probs=56.4
Q ss_pred HHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC--cE-EEEcCCCHh
Q psy78 298 SEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV--KV-VMITGDNIQ 374 (523)
Q Consensus 298 ~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi--~v-vi~TGr~~~ 374 (523)
.-+...|++|+-++ ...+.+.. -..-.+.+-.++|+-.....-.+..++.++.+|+.|. ++ +++-|....
T Consensus 104 ~~l~~~G~~vi~lG-~~~p~~~l------~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 104 TMLEANGFEVIDLG-RDVPPEEF------VEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred HHHHHCCCEEEECC-CCCCHHHH------HHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 35678999998777 33332211 1122345678899888777778999999999999987 55 666676544
Q ss_pred hHHHHHHHcCcc
Q psy78 375 TAISVAKECGII 386 (523)
Q Consensus 375 ~a~~ia~~lgi~ 386 (523)
..+++++|-|
T Consensus 177 --~~~~~~~GaD 186 (201)
T cd02070 177 --QEFADEIGAD 186 (201)
T ss_pred --HHHHHHcCCc
Confidence 3588999876
No 232
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=42.16 E-value=42 Score=33.62 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=39.2
Q ss_pred eeeeeeccCCCcchHHHHHHHHhC----CCcEEEEc---CCCHhh-HHHHHHHcCccC
Q psy78 338 LGLIILENRLKPQTEGVIKELKDA----RVKVVMIT---GDNIQT-AISVAKECGIID 387 (523)
Q Consensus 338 lG~i~~~d~lr~~t~~aI~~Lk~~----Gi~vvi~T---Gr~~~~-a~~ia~~lgi~~ 387 (523)
=|++...+++-+++.++++.|+++ |+.+..+| |++... +..+.+++|++-
T Consensus 8 DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~ 65 (321)
T TIGR01456 8 DGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDV 65 (321)
T ss_pred cCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCC
Confidence 467777788999999999999999 99999988 444555 444557888754
No 233
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=40.42 E-value=19 Score=32.05 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.1
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHH
Q psy78 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVA 380 (523)
Q Consensus 348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia 380 (523)
.+.+.+|++.++++|++++-+||++--....++
T Consensus 122 S~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 122 SKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLL 154 (176)
T ss_pred CHHHHHHHHHHHHcCCEEEEEecCCCccccccc
Confidence 567899999999999999999999987776665
No 234
>KOG3085|consensus
Probab=38.79 E-value=72 Score=30.42 Aligned_cols=39 Identities=18% Similarity=0.046 Sum_probs=28.2
Q ss_pred HHHHHHHHCCCEEEEEcC-ChhhHHHHHhCC-ccEEecccC
Q psy78 481 QLVLELQQLGYYVAMCGD-GANDCGALRAAH-AGISLSEAE 519 (523)
Q Consensus 481 ~~i~~L~~~~~~V~a~GD-G~ND~~MLk~A~-vGIAMgna~ 519 (523)
.+++.+.-.+++++.+|| ..||+..=+.+| .++-..|..
T Consensus 176 ~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~ 216 (237)
T KOG3085|consen 176 LALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSI 216 (237)
T ss_pred HHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcccc
Confidence 445555556889999999 679999988888 445555443
No 235
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=38.35 E-value=42 Score=31.46 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=54.9
Q ss_pred HHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcC-CCHhhH
Q psy78 298 SEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITG-DNIQTA 376 (523)
Q Consensus 298 ~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TG-r~~~~a 376 (523)
.-+...|++++=+|.-.-.++..+.. -+.+-.+++.-++.-.--++-++.++.|++.|+|--+.+| -.....
T Consensus 126 ~ml~~aGfevidLG~dvP~e~fve~a-------~e~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvt 198 (227)
T COG5012 126 TMLEAAGFEVIDLGRDVPVEEFVEKA-------KELKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVT 198 (227)
T ss_pred HHHHhCCcEEEecCCCCCHHHHHHHH-------HHcCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCcccc
Confidence 34677899999888443322222111 1334567777777766677899999999999998555554 333345
Q ss_pred HHHHHHcCccC
Q psy78 377 ISVAKECGIID 387 (523)
Q Consensus 377 ~~ia~~lgi~~ 387 (523)
...+++.|-|.
T Consensus 199 q~~a~~iGAD~ 209 (227)
T COG5012 199 QDWADKIGADA 209 (227)
T ss_pred HHHHHHhCCCc
Confidence 67889999873
No 236
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=34.85 E-value=31 Score=30.63 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred CCcchHHHHHHHHhCCCcEEEEc
Q psy78 347 LKPQTEGVIKELKDARVKVVMIT 369 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~T 369 (523)
+.+++.++|+++.+.|++++|+|
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVT 52 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEE
T ss_pred cchhHHHHHHHHHhcCCeEEEEe
Confidence 34679999999999999999999
No 237
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=34.51 E-value=51 Score=29.67 Aligned_cols=36 Identities=22% Similarity=0.102 Sum_probs=29.4
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHH
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVA 380 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia 380 (523)
..-.+++.++++.++++|++++.+|+.+.......+
T Consensus 82 sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~a 117 (179)
T TIGR03127 82 SGETESLVTVAKKAKEIGATVAAITTNPESTLGKLA 117 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence 346788999999999999999999998876554443
No 238
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.01 E-value=82 Score=24.27 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=35.1
Q ss_pred eeeccCCCcchHHHHHHHHhCCCcEEE-EcCCCHhhHHHHHHHcCcc
Q psy78 341 IILENRLKPQTEGVIKELKDARVKVVM-ITGDNIQTAISVAKECGII 386 (523)
Q Consensus 341 i~~~d~lr~~t~~aI~~Lk~~Gi~vvi-~TGr~~~~a~~ia~~lgi~ 386 (523)
+.+.+...+.+.+..+.|++.|+.+.+ ..+++...-...|+..|+.
T Consensus 7 i~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 7 IPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 344455677888888999999999987 5677777777788888863
No 239
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.40 E-value=61 Score=27.02 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=29.7
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHH
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISV 379 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~i 379 (523)
...-.+++.+.++.+|+.|.+++.+|+.........
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 455678999999999999999999998877655444
No 240
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.06 E-value=31 Score=31.12 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=27.0
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTA 376 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a 376 (523)
..-.+++.++++.+|++|.+++.+|+.+....
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~L 142 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGGKL 142 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 34578999999999999999999999866543
No 241
>PRK13747 putative mercury resistance protein; Provisional
Probab=32.60 E-value=26 Score=26.39 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=12.1
Q ss_pred heeeccCCCChhHHHH
Q psy78 196 IITIVIPPALPATMTV 211 (523)
Q Consensus 196 vlv~~~P~aLp~~~~~ 211 (523)
+.+..|||=||+.+++
T Consensus 23 lAvLTCPCHLpiLa~l 38 (78)
T PRK13747 23 LAVLTCPCHLPILAAV 38 (78)
T ss_pred HHHhcCcchHHHHHHH
Confidence 4477899999976554
No 242
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=32.44 E-value=61 Score=27.15 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCHhhHHH
Q psy78 348 KPQTEGVIKELKDARVKVVMITGDNIQTAIS 378 (523)
Q Consensus 348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ 378 (523)
.++..++++.++++|++++.+|+........
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 4778999999999999999999987654433
No 243
>KOG2257|consensus
Probab=31.84 E-value=1.2e+02 Score=25.94 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=30.3
Q ss_pred ccccchhHHHHHHHHHHHhhheee--cCchHHHHhccccCCCCCch
Q psy78 68 PIYKNKLFILSIIIMTWVCIYITL--IPSEFIIQFLQLRFPPNMQF 111 (523)
Q Consensus 68 ~~~~N~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~p~~~f 111 (523)
|-++=|.|...++..+++.+|++- .|.++ -+.+++...|+..|
T Consensus 5 ~t~e~YgF~~yiv~~~~~ViylIWai~P~~~-l~~~gi~y~Psk~W 49 (135)
T KOG2257|consen 5 PTREYYGFVLYIVSWTLFVIYLIWAITPVPI-LESLGITYYPSKYW 49 (135)
T ss_pred CcceehhhHHHHHHHHHHHHHHHhhcccHHH-HhhcCceeehHHHH
Confidence 445667888888888888877664 45555 56788888886333
No 244
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=30.27 E-value=2e+02 Score=29.13 Aligned_cols=45 Identities=16% Similarity=0.029 Sum_probs=35.9
Q ss_pred eeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCc
Q psy78 341 IILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385 (523)
Q Consensus 341 i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi 385 (523)
..+...--.-..++|+.+++.||++++.+-+-...-....++.++
T Consensus 244 f~~s~~q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~ 288 (345)
T PF07611_consen 244 FTFSETQFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKV 288 (345)
T ss_pred CCCChhHHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhch
Confidence 333333445668999999999999999999988888888888876
No 245
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=29.24 E-value=1.4e+02 Score=25.94 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=59.0
Q ss_pred HHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEE-EcCCC-Hh
Q psy78 297 LSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM-ITGDN-IQ 374 (523)
Q Consensus 297 ~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi-~TGr~-~~ 374 (523)
-+.+..-|+.|+..+...-+++ .-+.-++.|-..+|+-++.-.-....++.++.|+++|..-++ +-|-. +.
T Consensus 33 a~~l~d~GfeVi~~g~~~tp~e-------~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~ 105 (143)
T COG2185 33 ARALADAGFEVINLGLFQTPEE-------AVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPP 105 (143)
T ss_pred HHHHHhCCceEEecCCcCCHHH-------HHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCc
Confidence 3457888999988776554332 223346789999999999999999999999999999996443 44443 33
Q ss_pred hHHHHHHHcCcc
Q psy78 375 TAISVAKECGII 386 (523)
Q Consensus 375 ~a~~ia~~lgi~ 386 (523)
.-....++.|++
T Consensus 106 ~d~~~l~~~G~~ 117 (143)
T COG2185 106 GDYQELKEMGVD 117 (143)
T ss_pred hhHHHHHHhCcc
Confidence 334556677775
No 246
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=29.14 E-value=32 Score=39.05 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=43.3
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCc
Q psy78 200 VIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGS 265 (523)
Q Consensus 200 ~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~ 265 (523)
..-.+.|-++|+++..++....++ +.++..-|+++-+.|.+.+.+++|.|..---+-++
T Consensus 243 vlv~a~P~~Lp~~~~~~la~g~~r-------~ak~gilvk~l~alE~lg~v~~i~~DKTGTLT~~~ 301 (755)
T TIGR01647 243 LLVGGIPIAMPAVLSVTMAVGAAE-------LAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNK 301 (755)
T ss_pred HHHHhCCcchHHHHHHHHHHHHHH-------HHhCCeEEcccHHHHhccCCcEEEecCCCccccCc
Confidence 334567777888888888887777 66677778888889998888888888654333343
No 247
>PRK13937 phosphoheptose isomerase; Provisional
Probab=28.88 E-value=68 Score=29.28 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=27.9
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS 378 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ 378 (523)
.--.+++.++++.++++|++++.+||.+......
T Consensus 116 sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 116 SGNSPNVLAALEKARELGMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 3357899999999999999999999976654443
No 248
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.42 E-value=56 Score=27.90 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy78 112 PLIVIYLAICNFVLSL 127 (523)
Q Consensus 112 ~~~l~~~~~~~~~~~~ 127 (523)
||.+|+++++-+++.+
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 4556655555444433
No 249
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.39 E-value=3.4e+02 Score=25.84 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHHHHHCCCEEEEEcCChh---hHHHHHhCCccEEeccc
Q psy78 481 QLVLELQQLGYYVAMCGDGAN---DCGALRAAHAGISLSEA 518 (523)
Q Consensus 481 ~~i~~L~~~~~~V~a~GDG~N---D~~MLk~A~vGIAMgna 518 (523)
..++.+++....-+++|=|.| |+..+..+-=|+.+|.+
T Consensus 177 ~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~ADgvVvGSa 217 (242)
T cd04724 177 ELIKRIRKYTDLPIAVGFGISTPEQAAEVAKYADGVIVGSA 217 (242)
T ss_pred HHHHHHHhcCCCcEEEEccCCCHHHHHHHHccCCEEEECHH
Confidence 445555555444466777787 56566554336767753
No 250
>KOG2882|consensus
Probab=27.33 E-value=1.1e+02 Score=30.27 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=40.5
Q ss_pred eeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHH---HcCcc
Q psy78 338 LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK---ECGII 386 (523)
Q Consensus 338 lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~---~lgi~ 386 (523)
=|++-..+.+-|++.++++.|++.|-++.++|--+..+-..+++ .+|+.
T Consensus 30 DGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 30 DGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred CcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 36777788999999999999999999999999887777666654 56765
No 251
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=27.20 E-value=5.8e+02 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCEEEEEcCChh---hHHHHHhCCc-cEEeccc
Q psy78 479 KQQLVLELQQLGYYVAMCGDGAN---DCGALRAAHA-GISLSEA 518 (523)
Q Consensus 479 K~~~i~~L~~~~~~V~a~GDG~N---D~~MLk~A~v-GIAMgna 518 (523)
-...++.++++...-+++|=|.| |+..+..+|. ||.+|.|
T Consensus 190 ~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 190 LKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 34556666666444567788888 4444444533 6767654
No 252
>COG4996 Predicted phosphatase [General function prediction only]
Probab=26.69 E-value=94 Score=26.63 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.3
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
+=.+.+.++++++.+|+.|+-+-.+|=-.+..|....+.++++.
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~ 82 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQ 82 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhh
Confidence 33578999999999999999999999999999999999999863
No 253
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.66 E-value=74 Score=28.62 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=29.0
Q ss_pred ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHH
Q psy78 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISV 379 (523)
Q Consensus 344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~i 379 (523)
...-.+++.++++.++++|.+++.+|+.+.......
T Consensus 84 ~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ 119 (179)
T cd05005 84 GSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKL 119 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence 344578899999999999999999999877655443
No 254
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.98 E-value=2.5e+02 Score=27.33 Aligned_cols=84 Identities=8% Similarity=0.198 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCc-EEEEc
Q psy78 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVK-VVMIT 369 (523)
Q Consensus 291 ~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~-vvi~T 369 (523)
+.+.+.++.+...|-..+.+.+-..............+-.-+.+...+--+...|.-+.+..+.|..+++.|++ +..+|
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~ 94 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALR 94 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeC
Confidence 66777778887776666666654332110000000011111236677777777888788899999999999996 55599
Q ss_pred CCCHh
Q psy78 370 GDNIQ 374 (523)
Q Consensus 370 Gr~~~ 374 (523)
||++.
T Consensus 95 GD~~~ 99 (272)
T TIGR00676 95 GDPPK 99 (272)
T ss_pred CCCCC
Confidence 99884
No 255
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.73 E-value=77 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=26.1
Q ss_pred CCCcchHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78 346 RLKPQTEGVIKELKDARVKVVMITGDNIQTA 376 (523)
Q Consensus 346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a 376 (523)
--.+++.++++.+|++|++++.+|+.+....
T Consensus 90 G~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 90 GNSKNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 3578999999999999999999999765444
No 256
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.35 E-value=52 Score=30.43 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=26.3
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAI 377 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~ 377 (523)
-.+++.++++.++++|.+++.+||.+.....
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La 155 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGGQLA 155 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChhh
Confidence 4788999999999999999999998765443
No 257
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.35 E-value=1.2e+02 Score=23.11 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.0
Q ss_pred cCCCcchHHHHHHHHhCCCcEEEEc
Q psy78 345 NRLKPQTEGVIKELKDARVKVVMIT 369 (523)
Q Consensus 345 d~lr~~t~~aI~~Lk~~Gi~vvi~T 369 (523)
..-++++.++++.++++|.+++.+|
T Consensus 57 sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 57 SGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3347889999999999999999998
No 258
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=25.33 E-value=2.1e+02 Score=28.03 Aligned_cols=84 Identities=10% Similarity=0.121 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC-cEEEEcC
Q psy78 292 NIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV-KVVMITG 370 (523)
Q Consensus 292 ~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi-~vvi~TG 370 (523)
.+.+.++.+...+--.+.+.+...............+..-+.++..+--+...|.=+.+..+-|..+++.|+ .+..+||
T Consensus 28 ~l~~~~~~l~~~~pd~vsVTd~~~~~~~~~s~~~a~~l~~~~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~G 107 (287)
T PF02219_consen 28 KLLEAAERLKDLGPDFVSVTDNPGGSSRMMSLLAAAKLLKETGIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTG 107 (287)
T ss_dssp HHHHHHHHHHTT--SEEEE---GCGTTHHHHHHHHHHHHHHTT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS
T ss_pred HHHHHHHHhcCCCCCEEEeecCCCCcccCCcHHHHHHHHHHhCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecC
Confidence 355556666666644444444333211110000011112245677888888888877888888999999999 5889999
Q ss_pred CCHhh
Q psy78 371 DNIQT 375 (523)
Q Consensus 371 r~~~~ 375 (523)
|++..
T Consensus 108 D~~~~ 112 (287)
T PF02219_consen 108 DPPKG 112 (287)
T ss_dssp -TSTT
T ss_pred CCCCC
Confidence 98654
No 259
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.09 E-value=55 Score=30.10 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=26.3
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAI 377 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~ 377 (523)
-.+++.++++.++++|++++.+||.+.....
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~ 153 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGGKMA 153 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 4788999999999999999999998665443
No 260
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.78 E-value=4.3e+02 Score=24.34 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=55.7
Q ss_pred HHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHh-CCCcEEEEcCCCHhh
Q psy78 297 LSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKD-ARVKVVMITGDNIQT 375 (523)
Q Consensus 297 ~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~-~Gi~vvi~TGr~~~~ 375 (523)
.+.+...||.+++.+...+..... ......|.. ++.++++-++ ..+++-.+.+ .+-.++++||++...
T Consensus 22 ~~~l~eag~~~Vg~~~~~~~~~~~-------~~~~~pDvV---ildie~p~rd-~~e~~~~~~~~~~~piv~lt~~s~p~ 90 (194)
T COG3707 22 REGLLEAGYQRVGEAADGLEAVEV-------CERLQPDVV---ILDIEMPRRD-IIEALLLASENVARPIVALTAYSDPA 90 (194)
T ss_pred HHHHHHcCCeEeeeecccccchhH-------HHhcCCCEE---EEecCCCCcc-HHHHHHHhhcCCCCCEEEEEccCChH
Confidence 345678999999988766543211 112234444 4567888888 7777666655 577899999999999
Q ss_pred HHHHHHHcCcc
Q psy78 376 AISVAKECGII 386 (523)
Q Consensus 376 a~~ia~~lgi~ 386 (523)
...-+.+.|..
T Consensus 91 ~i~~a~~~Gv~ 101 (194)
T COG3707 91 LIEAAIEAGVM 101 (194)
T ss_pred HHHHHHHcCCe
Confidence 99999999874
No 261
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=24.69 E-value=72 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.2
Q ss_pred cchHHHHHHHHhCCCcEEEEcCCCH
Q psy78 349 PQTEGVIKELKDARVKVVMITGDNI 373 (523)
Q Consensus 349 ~~t~~aI~~Lk~~Gi~vvi~TGr~~ 373 (523)
++-+++|..|.++|++|-|.|....
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~eF 26 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSEF 26 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHHH
Confidence 5678999999999999999886533
No 262
>KOG0203|consensus
Probab=23.87 E-value=46 Score=37.39 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.4
Q ss_pred ccccceeeecCCccccCCceeEEeecc
Q psy78 247 LKKYNISCINSRVINVSGSINCVCFDK 273 (523)
Q Consensus 247 ~~~~~il~~~~~~~~~~~~v~~v~fDK 273 (523)
+.+-++++|+.++.+.+|...++|.||
T Consensus 347 Ma~Knc~vknLeavetlGsts~I~SDk 373 (1019)
T KOG0203|consen 347 MARKNCLVKNLEAVETLGSTSTICSDK 373 (1019)
T ss_pred HhhceeEEeeeeheeecccceeEeecc
Confidence 444489999999999999999999999
No 263
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.31 E-value=1.3e+02 Score=28.76 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78 352 EGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387 (523)
Q Consensus 352 ~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~ 387 (523)
++.|.+|.+.|+.|+=++-|...+-....++||+..
T Consensus 199 ~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~~ 234 (236)
T PF12017_consen 199 KNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGISE 234 (236)
T ss_pred HHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCCC
Confidence 567899999999999999999999999999999963
No 264
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.13 E-value=1.9e+02 Score=28.32 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=38.8
Q ss_pred cceeeeeeeeccC--CCc-chHHHHHHHHhCCCcEEEE-cCCCHhhHHHHHHHcCc
Q psy78 334 DLEFLGLIILENR--LKP-QTEGVIKELKDARVKVVMI-TGDNIQTAISVAKECGI 385 (523)
Q Consensus 334 dl~~lG~i~~~d~--lr~-~t~~aI~~Lk~~Gi~vvi~-TGr~~~~a~~ia~~lgi 385 (523)
+++.++.+..... +++ +..+.++.+++.|+++++. ++-+...+..++++.|.
T Consensus 197 gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~ 252 (286)
T cd01019 197 GLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGA 252 (286)
T ss_pred CCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCc
Confidence 5667777666443 333 4457888899999998777 66678889999999986
No 265
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=22.79 E-value=5.8e+02 Score=25.57 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHHHHHhhc
Q psy78 204 ALPATMTVGKLYALTRLKKY 223 (523)
Q Consensus 204 aLp~~~~~~~~~~~~~l~k~ 223 (523)
=-.+.+|+.+.+..++..++
T Consensus 283 y~~l~lP~li~~~~~~~~~~ 302 (328)
T PF02117_consen 283 YAALSLPLLIIYRIRRIRRQ 302 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33566777777777776655
No 266
>PLN02591 tryptophan synthase
Probab=22.64 E-value=5.9e+02 Score=24.51 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHCCCEEEEEcCChh---hHHHHHhC-CccEEecc
Q psy78 478 QKQQLVLELQQLGYYVAMCGDGAN---DCGALRAA-HAGISLSE 517 (523)
Q Consensus 478 ~K~~~i~~L~~~~~~V~a~GDG~N---D~~MLk~A-~vGIAMgn 517 (523)
+=...++.+++....-+++|=|.+ |+..+... -=|+-.|.
T Consensus 176 ~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 176 RVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred hHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 334556677776555566777777 66665554 33555554
No 267
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=22.59 E-value=1.5e+02 Score=23.14 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=34.2
Q ss_pred eeeecc---CCCcchHHHHHHHHhCCCcEEEE-cCCCHhhHHHHHHHcCcc
Q psy78 340 LIILEN---RLKPQTEGVIKELKDARVKVVMI-TGDNIQTAISVAKECGII 386 (523)
Q Consensus 340 ~i~~~d---~lr~~t~~aI~~Lk~~Gi~vvi~-TGr~~~~a~~ia~~lgi~ 386 (523)
++.+.+ ...+-+.+..+.|+++|+.+.+- ++++...-...|...|+.
T Consensus 4 Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 4 IIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 444555 56677888999999999988887 455555566778888873
No 268
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.20 E-value=1.1e+02 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=26.6
Q ss_pred eeeeccCC-CcchHHHHHHHHhCCCcEEEEcCCCH
Q psy78 340 LIILENRL-KPQTEGVIKELKDARVKVVMITGDNI 373 (523)
Q Consensus 340 ~i~~~d~l-r~~t~~aI~~Lk~~Gi~vvi~TGr~~ 373 (523)
.+.++-+= ++...++++.|+++|+++...|.+..
T Consensus 43 ~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 43 FVGVSVANGAEELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCCHH
Confidence 34556555 67889999999999999988777654
No 269
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=21.92 E-value=1.3e+02 Score=27.05 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=32.6
Q ss_pred ccceeeeeeeeccCCCc-------------------------chHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78 333 KDLEFLGLIILENRLKP-------------------------QTEGVIKELKDARVKVVMITGDNIQTA 376 (523)
Q Consensus 333 ~dl~~lG~i~~~d~lr~-------------------------~t~~aI~~Lk~~Gi~vvi~TGr~~~~a 376 (523)
.|..++|.+.++.++.+ -.+.+++++|+.|++-|++|-|...-|
T Consensus 76 ~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~A 144 (174)
T COG3981 76 EDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIA 144 (174)
T ss_pred cCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCch
Confidence 36778888888776543 345688999999999999997755433
No 270
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=21.82 E-value=2.6e+02 Score=28.24 Aligned_cols=149 Identities=11% Similarity=0.151 Sum_probs=77.1
Q ss_pred heeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeEEeecccc
Q psy78 196 IITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMF 275 (523)
Q Consensus 196 vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~v~fDK~~ 275 (523)
++.+.+|-+. ---+.+...++....++++ -..+++.+|.-+.+.+..+|....+
T Consensus 107 VI~V~t~GGf-Gdn~~G~~~aLeAiidq~~----------------i~~~e~~rq~~~l~~at~~ek~~g~--------- 160 (352)
T TIGR03282 107 VIAVEVHAGF-GDNTEGVIATLESAAEAGI----------------IDEDEVERQKELLKKATEVEKKRGM--------- 160 (352)
T ss_pred EEEEECCCCC-ccHHHHHHHHHHHHHHhCC----------------cCHHHHHHHHHHHHHHHHHHHHhch---------
Confidence 5556667777 6777888888888888821 1112222222122222222221111
Q ss_pred ccccccccCCC-CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeec-----cCCCc
Q psy78 276 ESTGWTLEEPM-KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILE-----NRLKP 349 (523)
Q Consensus 276 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~-----d~lr~ 349 (523)
..-..-+|+ ...+....+.+-+..++|.|++++=.-.-...+--......-.....|...+-+--++ .++|.
T Consensus 161 --a~~~yi~p~~~d~~~~~~~~l~~~~~~~~~~~~vlnakket~y~fad~~~~~~~~~~~~~~~~~anld~~~gl~~ir~ 238 (352)
T TIGR03282 161 --AKREYIEPSYGDDKHKVAKRLVDLIQEGKKVLAILNAKKETAYLFADPLLALNKLGPDNPPVNIANLDPNIGLPKVRR 238 (352)
T ss_pred --hhccccCCCCCccHHHHHHHHHHHHhcCCcEEEEEecchhHHHhhhhhhHHHhhhcccCCceEEeecCcccCcHHHHH
Confidence 111111222 2456777778888889999987763222211111000000111122222222222233 35889
Q ss_pred chHHHHHHHHhCCCcEEEEcCCC
Q psy78 350 QTEGVIKELKDARVKVVMITGDN 372 (523)
Q Consensus 350 ~t~~aI~~Lk~~Gi~vvi~TGr~ 372 (523)
++...++.+++.|+++-=+||--
T Consensus 239 ~a~~i~~~~~~~g~~~~~i~g~l 261 (352)
T TIGR03282 239 DAEVILSDFDATGLEYDYITGGL 261 (352)
T ss_pred HHHHHHHHHHhcCCcceeeeccc
Confidence 99999999999999999788863
No 271
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=21.61 E-value=2.1e+02 Score=24.07 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=18.3
Q ss_pred HHHHHHCCCEEEEEcCChh--hHHHHHhCCccEE
Q psy78 483 VLELQQLGYYVAMCGDGAN--DCGALRAAHAGIS 514 (523)
Q Consensus 483 i~~L~~~~~~V~a~GDG~N--D~~MLk~A~vGIA 514 (523)
++.+ ..-.-+...|-|.| |++.++.-|+-|+
T Consensus 55 l~~~-~~Lk~I~~~~~G~d~id~~~a~~~gI~V~ 87 (133)
T PF00389_consen 55 LEAA-PNLKLISTAGAGVDNIDLEAAKERGIPVT 87 (133)
T ss_dssp HHHH-TT-SEEEESSSSCTTB-HHHHHHTTSEEE
T ss_pred Hhcc-ceeEEEEEcccccCcccHHHHhhCeEEEE
Confidence 3444 33456778888888 6666666655554
No 272
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.52 E-value=1.6e+02 Score=25.71 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=10.7
Q ss_pred HHhhheeecCchHHHHhccccC
Q psy78 84 WVCIYITLIPSEFIIQFLQLRF 105 (523)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~ 105 (523)
+++..++|.|.+. .+++++..
T Consensus 7 i~~~~llf~P~~~-~~~l~l~~ 27 (151)
T PF14163_consen 7 IFSGLLLFLPESL-LEWLNLDK 27 (151)
T ss_pred HHHHHHHHCCHHH-HHHhCcch
Confidence 3333444556544 56666644
No 273
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.38 E-value=3.4e+02 Score=29.40 Aligned_cols=81 Identities=9% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCC
Q psy78 292 NIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGD 371 (523)
Q Consensus 292 ~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr 371 (523)
++...+......+-++-.+++..+......... .+.-++...- + .=.+++.++++++++.|+.+++ |+
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~-----ll~~~i~~~~---~--~~~~e~~~~~~~l~~~G~~~vi--G~ 152 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQA-----AFNLDIVQRS---Y--VTEEDARSCVNDLRARGIGAVV--GA 152 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHH-----HhCCceEEEE---e--cCHHHHHHHHHHHHHCCCCEEE--CC
Confidence 344555555566778888888777543221111 1111222211 1 2257899999999999999988 55
Q ss_pred CHhhHHHHHHHcCcc
Q psy78 372 NIQTAISVAKECGII 386 (523)
Q Consensus 372 ~~~~a~~ia~~lgi~ 386 (523)
. .+..+|+++|+.
T Consensus 153 ~--~~~~~A~~~gl~ 165 (526)
T TIGR02329 153 G--LITDLAEQAGLH 165 (526)
T ss_pred h--HHHHHHHHcCCc
Confidence 4 456889999985
No 274
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=21.07 E-value=60 Score=32.06 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=28.2
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCHhhH-HHHHHHcCc
Q psy78 348 KPQTEGVIKELKDARVKVVMITGDNIQTA-ISVAKECGI 385 (523)
Q Consensus 348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a-~~ia~~lgi 385 (523)
.+++...=..|++.|.+++++|.+....+ ....+.++.
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGL 100 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 56777777788889999999998876654 455555655
No 275
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.06 E-value=70 Score=27.51 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.4
Q ss_pred CCcchHHHHHHHHhCCCcEEEEcC
Q psy78 347 LKPQTEGVIKELKDARVKVVMITG 370 (523)
Q Consensus 347 lr~~t~~aI~~Lk~~Gi~vvi~TG 370 (523)
-.+...++++.+|++|.+|+-+||
T Consensus 115 ~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 115 NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 458889999999999999999987
No 276
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=20.93 E-value=35 Score=25.64 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=11.9
Q ss_pred eeeccCCCChhHHHH
Q psy78 197 ITIVIPPALPATMTV 211 (523)
Q Consensus 197 lv~~~P~aLp~~~~~ 211 (523)
.+..|||-||+.+++
T Consensus 24 A~lTCPCHLpil~~v 38 (75)
T PF05052_consen 24 ALLTCPCHLPILAPV 38 (75)
T ss_pred HHhhCcchHHHHHHH
Confidence 456799999988764
No 277
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.67 E-value=1.7e+02 Score=22.09 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=31.0
Q ss_pred eeccCCCcchHHHHHHHHhCCCcEEEE-cCCCHhhHHHHHHHcCc
Q psy78 342 ILENRLKPQTEGVIKELKDARVKVVMI-TGDNIQTAISVAKECGI 385 (523)
Q Consensus 342 ~~~d~lr~~t~~aI~~Lk~~Gi~vvi~-TGr~~~~a~~ia~~lgi 385 (523)
...+...+.+.+..++|+++|+.+.+- .+++.......|...|+
T Consensus 8 ~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~ 52 (91)
T cd00859 8 PLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGA 52 (91)
T ss_pred EcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCC
Confidence 344445567778888999999988774 44566666677777765
No 278
>PF15013 CCSMST1: CCSMST1 family
Probab=20.10 E-value=1.1e+02 Score=23.62 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=25.7
Q ss_pred cCCCccc-ccccchhHHHHHHHHHHHhhheeecCchHHHHhcc
Q psy78 61 QGKPYRT-PIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQ 102 (523)
Q Consensus 61 ~G~Pfr~-~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (523)
.|+..++ |+|+=+++.++++++++.. +++-...++..+|+
T Consensus 21 ~~~~~~~~PWyq~~~is~sl~~fliyF--C~lReEnDiD~~L~ 61 (77)
T PF15013_consen 21 RGGKQQRMPWYQVYPISLSLAAFLIYF--CFLREENDIDRWLD 61 (77)
T ss_pred cCCCCCCCcceeeehhHHHHHHHHHHH--hhccccccHHHHHH
Confidence 4444444 9999999988887666552 44555555555554
Done!