RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy78
(523 letters)
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 122 bits (308), Expect = 2e-29
Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 38/230 (16%)
Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKH---LNYMKREDIEKDLEFLGLIILENRL 347
E + E G RV+ L + Y + + DL F+GL+ + +
Sbjct: 541 EAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPP 600
Query: 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
+ + + + A +KV+M+TGD+ TA ++AK GII G ++ A
Sbjct: 601 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLN------ 654
Query: 408 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIR---DQMPELIPRI 464
A V G +L + + +++
Sbjct: 655 ----------------------IPIGQVNPRDAKACVVHGS--DLKDLSTEVLDDILHY- 689
Query: 465 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 514
+FAR S QK +V Q+ G VA+ GDG ND AL+ A G++
Sbjct: 690 -HTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVA 738
Score = 30.3 bits (69), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 180 ILRGRSLWDIVIKSLDIITIVIPPALPATMTV 211
++ G S + VI + II +P L AT+TV
Sbjct: 316 LILGYSWLEAVIFLIGIIVANVPEGLLATVTV 347
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 121 bits (307), Expect = 3e-29
Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 38/230 (16%)
Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKH---LNYMKREDIEKDLEFLGLIILENRL 347
E + G RV+ LS +DY + L F GL+ + +
Sbjct: 546 EAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPP 605
Query: 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
+ + + + A ++V+M+TGD+ TA ++A GII G
Sbjct: 606 RATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGS----------------- 648
Query: 408 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIR---DQMPELIPRI 464
+T + + A + G +L ++ E +
Sbjct: 649 -----------ETVEDIAARLRVPVDQVNRKDARACVINGM--QLKDMDPSELVEALRTH 695
Query: 465 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 514
+FAR S QK +V Q+LG VA+ GDG ND AL+ A G++
Sbjct: 696 --PEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVA 743
Score = 30.3 bits (69), Expect = 1.7
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 180 ILRGRSLWDIVIKSLDIITIVIPPALPATMTV 211
+ G + ++ + I+ +P L AT+TV
Sbjct: 321 MCIGYTFLRAMVFFMAIVVAYVPEGLLATVTV 352
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 115 bits (290), Expect = 3e-27
Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 60/226 (26%)
Query: 289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
+ + ++S++ +Y E+G R +A+A + + +E EF+GL+ L + +
Sbjct: 439 LSKKVLSIIDKYAERGLRSLAVA--------RQVVPEKTKESPGAPWEFVGLLPLFDPPR 490
Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
+ I+ + V V MITGD + + G+ G + SA+ G
Sbjct: 491 HDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGM---GTNMYPSSALLGT------- 540
Query: 409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 468
+ + + +I K
Sbjct: 541 ---------------HKDANLASIPVE---------------------------ELIEKA 558
Query: 469 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 514
FA + + K ++V +LQ+ + V M GDG ND AL+ A GI+
Sbjct: 559 DGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIA 604
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 111 bits (281), Expect = 4e-26
Identities = 63/232 (27%), Positives = 92/232 (39%), Gaps = 65/232 (28%)
Query: 291 ENIVSVLSEYT--EQGYRVIALASRTLS--IEDYKHLNYMKREDIEKDLEFLGLIILENR 346
E I+SV+ E+ R +ALA+R E+ + + + E DL F+G++ +
Sbjct: 544 EKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGM--- 600
Query: 347 LKPQTEGV---IKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLK 403
L P + V I+ +DA ++V+MITGDN TAI++ + GI E V D
Sbjct: 601 LDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR-------- 652
Query: 404 ECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMP--ELI 461
A TG+ E D +P E
Sbjct: 653 ----------------------------------------AYTGR--EF--DDLPLAEQR 668
Query: 462 PRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
+ FAR+ K ++V LQ AM GDG ND AL+ A GI
Sbjct: 669 -EACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGI 719
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 108 bits (272), Expect = 5e-25
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 69/228 (30%)
Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQ 350
+ + ++E+ +G+R + +A R+ E E LG++ + +
Sbjct: 496 QAYKNKVAEFATRGFRSLGVA----------------RKRGEGSWEILGIMPCMDPPRHD 539
Query: 351 TEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF 410
T + E K + + M+TGD + A +++ G+ G + + + G
Sbjct: 540 TYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL---GTNIYNAERLGLGGGG------ 590
Query: 411 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI 470
E+ +
Sbjct: 591 -----------------DMPGSEVY---------------------------DFVEAADG 606
Query: 471 FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
FA + K +V LQQ GY VAM GDG ND +L+ A GI++ +
Sbjct: 607 FAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGS 654
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 61.3 bits (150), Expect = 1e-10
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
+ E G+I L +R++P++ I +LK +K +M+TGDN A VA+E G+
Sbjct: 132 NGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL 183
Score = 45.5 bits (109), Expect = 2e-05
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
+K + V E+QQ Y AM GDG ND AL A GI
Sbjct: 193 HEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGI 228
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 60.5 bits (148), Expect = 2e-10
Identities = 10/52 (19%), Positives = 28/52 (53%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
+ E + + + +P + +++LK+ +K+++++GD ++KE I
Sbjct: 124 NGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI 175
Score = 49.8 bits (120), Expect = 7e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
++ +S + K +++ +L+Q G V M GDG ND AL A +
Sbjct: 178 YYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 59.4 bits (145), Expect = 5e-10
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
+ G+I + + LK + ++ELK +KV MITGDN ++A ++++E +
Sbjct: 151 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 202
Score = 42.5 bits (101), Expect = 2e-04
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
QK + V +LQ VA GDG ND AL A GI
Sbjct: 212 HQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 247
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 59.9 bits (146), Expect = 1e-09
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
D + + L+++E+ +K T I EL+ + +++VM+TGD+ +TA +VA GI
Sbjct: 542 DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI 593
Score = 48.7 bits (117), Expect = 4e-06
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
+ A + + K ++V EL+ G VAM GDG ND AL A GI
Sbjct: 596 VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGI 639
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 59.4 bits (145), Expect = 1e-09
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
+ G+I + + LK + ++ELK +KV MITGDN ++A ++++E +
Sbjct: 445 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 496
Score = 41.7 bits (99), Expect = 6e-04
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
+ A + QK + V +LQ VA GDG ND AL A GI
Sbjct: 499 VIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 541
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 58.3 bits (142), Expect = 4e-09
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
+ G+I + + LK + ++ELK +KV MITGDN ++A ++++E +
Sbjct: 523 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 574
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
QK + V +LQ VA GDG ND AL A GI
Sbjct: 584 HQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 619
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 3e-08
Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 35/214 (16%)
Query: 150 KS------CKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDI-ITIVIP 202
K+ C ++ ++D W L + P + + L + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 203 PALPATMTVGKLYALTRLKKYNISCI------NSRVINLMTVG-KLYALTRLKKYNISCI 255
L +L L + K Y + N++ N + K+ TR
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR--------- 273
Query: 256 NSRVINVSGSINCVCFDKMFESTGWTLEEPM----KFVPENIVSVLSEYTEQGY-RVIAL 310
+V + + S T +E K++ + L R +++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSI 332
Query: 311 ASRTLS-----IEDYKHLNYMKRED-IEKDLEFL 338
+ ++ +++KH+N K IE L L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Score = 53.3 bits (127), Expect = 1e-07
Identities = 53/412 (12%), Positives = 107/412 (25%), Gaps = 124/412 (30%)
Query: 97 IIQFLQLRFPPNM------QFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYK 150
I+ + F N P ++ + ++ L + +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 151 SCKYIGIENELDSNYMW--------PKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIP 202
+E L NY + + S Y R R L++ V
Sbjct: 81 KF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQ--------VFA 127
Query: 203 PALPATMTVGKLYALTRLKK--YNISCINSRVINLMT-VGKLYALTRLKKYNISCINSRV 259
V +L +L++ + + +I+ + GK + + V
Sbjct: 128 K-----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK------------TWVALDV 170
Query: 260 INVSGSINCVCFDKMFESTGWTLEEPMKF----VPENIVSVL--------SEYTEQGYRV 307
S + C K+F W + PE ++ +L +T +
Sbjct: 171 CL-SYKVQCKMDFKIF----W-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 308 IALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM 367
+ R SI+ +K + E L++L N Q + K+++
Sbjct: 221 SNIKLRIHSIQAEL-RRLLKSKPYEN-----CLLVLLN---VQNAKAWNAF-NLSCKILL 270
Query: 368 ITGD-NIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLN 426
T + +S A T + + L
Sbjct: 271 TTRFKQVTDFLSAAT--------TTHISLDHHSMTLTP---------------------- 300
Query: 427 YSKTEEELGLSSGAYKFA-VTGKSWELIRDQMPELIPRIIVKGAIFARMSSD 477
+E L + + ++ PR + +I A D
Sbjct: 301 ----DEVKSL------LLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRD 339
Score = 38.3 bits (88), Expect = 0.006
Identities = 48/257 (18%), Positives = 95/257 (36%), Gaps = 59/257 (22%)
Query: 91 LIPSEFIIQFLQLR-FPPNMQFPLIVIYLAICN--FVLSLFIENFIIHYLLMIKFKRWSN 147
L P+E+ F +L FPP+ P I++ L + + + N + Y L+ ++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQPK 422
Query: 148 DYKSCKYIGIENELDSNYMWPKLSSDPEP--------NYEILRGRSLWDIVIKSLDI-IT 198
+ + S Y+ K+ + E +Y I + D++ LD
Sbjct: 423 ESTI--------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 199 IVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTV-----GKLYALTRLKKYNIS 253
I L + + L R+ + + ++ + T L L +LK Y
Sbjct: 475 SHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY--- 530
Query: 254 CINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVP---ENIVSVLSEYTE--QGYRVI 308
I N ++++ + + F+P EN++ S+YT+ + I
Sbjct: 531 ---KPYI----CDNDPKYERL-------VNAILDFLPKIEENLIC--SKYTDLLR----I 570
Query: 309 ALASRTLSI--EDYKHL 323
AL + +I E +K +
Sbjct: 571 ALMAEDEAIFEEAHKQV 587
Score = 34.8 bits (79), Expect = 0.070
Identities = 23/173 (13%), Positives = 62/173 (35%), Gaps = 28/173 (16%)
Query: 320 YKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISV 379
YK + + + + + ++ + + L + ++++ D + + +
Sbjct: 18 YKDILSVFEDAFVDNFDC-------KDVQDMPKSI---LSKEEIDHIIMSKDAVSGTLRL 67
Query: 380 AKECGIIDPGETVVDVSAVPGGLKECPKVY-FTVSGVSA--IQTKAKKLNYSKTEEELGL 436
++ E +V V L+ Y F +S + Q Y + + L
Sbjct: 68 F-WT-LLSKQEEMVQK-FVEEVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 437 SSGAY-KFAVT-GKSWELIRDQMPELIP--RIIVKGAIFARMSSDQKQQLVLE 485
+ + K+ V+ + + +R + EL P +++ G + K + L+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-----VLGSGKTWVALD 169
Score = 34.8 bits (79), Expect = 0.088
Identities = 43/292 (14%), Positives = 86/292 (29%), Gaps = 88/292 (30%)
Query: 7 LMVSMQIISFIIVHKFAWFEPFVYTN------AISYS-----------CYENYAVFSISM 49
+S+ I I W + + + N I S ++ +VF
Sbjct: 328 RRLSI-IAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---- 381
Query: 50 FQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWV-CIYIT--LIPSEFIIQFLQLRFP 106
P I L ++ W I ++ ++ L + P
Sbjct: 382 --------------PPSAHIPTILLSLI------WFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 107 PNMQFPLIVIYLAICNFVLSLF-IENFII-HYLLMIKFKRWS------NDYKSCKYIG-- 156
+ IYL + + + + + I+ HY + F + Y +IG
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHH 480
Query: 157 ---IENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGK 213
IE+ + ++ + D + L + + + +
Sbjct: 481 LKNIEHP-ERMTLFRMVFLD----FRFLEQK---------------IRHDSTAWNASGSI 520
Query: 214 LYALTRLKKYN--ISCINSRVINLMTVGKLYALTR-LKKYNISCINSRVINV 262
L L +LK Y I C N + + A+ L K + I S+ ++
Sbjct: 521 LNTLQQLKFYKPYI-CDNDPKYERL----VNAILDFLPKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 3e-08
Identities = 83/473 (17%), Positives = 146/473 (30%), Gaps = 174/473 (36%)
Query: 39 YENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWV--------CIYIT 90
Y+ Y V + ++ A T S+ RT + K+F + I+ W+ Y+
Sbjct: 177 YQTYHVLVGDLIKFS--AETLSE--LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 91 LIP-SEFIIQFLQLRFPPNMQFPLIVI-----YLAICN---------------------- 122
IP S PLI + Y+
Sbjct: 233 SIPIS----------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 123 FVLSLFI------ENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEP 176
V ++ I E+F + I + IG+ +P S P
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFF---------IGVR----CYEAYPNTSLPPS- 322
Query: 177 NYEILRGRSLWDIVIKSLDIITIVIPPALPATM-TVGKLYALTRLKKYNISCINSRVINL 235
I+ SL+ +P+ M ++ L +++ Y ++ NS
Sbjct: 323 ------------ILEDSLE-----NNEGVPSPMLSISNL-TQEQVQDY-VNKTNSH---- 359
Query: 236 MTVGKLYALTRLKKYNISCINS-RVINVSGSIN-----CVCFDKMFESTGWTLEEPMKFV 289
L K+ IS +N + + VSG + K +G + + +
Sbjct: 360 --------LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG---LDQSR-I 407
Query: 290 PENIVSVLSEYTEQGYRVIALASRTLSI-EDYKHLNYMK--REDIEKDLEFLGLIILENR 346
P SE R + ++R L + + H + + + I KDL +
Sbjct: 408 P------FSE------RKLKFSNRFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 347 LK-P--QTE-GVIKELKDARVK--------VVMITGDNIQ-TAISVAKECGIID--PGET 391
++ P T G D RV V I ++ + K I+D PG
Sbjct: 455 IQIPVYDTFDG-----SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG- 508
Query: 392 VVDVSAVPGGLKECPKVYFTV--SGVSAIQTKAKKLNYSKTEEELGLSSGAYK 442
S + G L + +GV I A L+ +++ G +K
Sbjct: 509 ---ASGL-GVL-----THRNKDGTGVRVIV--AGTLD-INPDDDYG-----FK 544
Score = 49.7 bits (118), Expect = 2e-06
Identities = 51/291 (17%), Positives = 90/291 (30%), Gaps = 103/291 (35%)
Query: 184 RSLWDIVIKSL------DIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMT 237
+ +W+ I+ IVI P +T+ + + K+ I ++
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINN--PVNLTI--HFGGEKGKR-----IRENYSAMIF 1693
Query: 238 VGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVL 297
+ + +K + IN F S + ++S
Sbjct: 1694 ETIVDGKLKTEK------------IFKEINEHSTSYTFRS------------EKGLLS-A 1728
Query: 298 SEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEF----LGLIILENRLKPQTE- 352
+++T Q AL + ++ L + I D F LG E
Sbjct: 1729 TQFT-Q----PALT--LMEKAAFEDL--KSKGLIPADATFAGHSLG------------EY 1767
Query: 353 -------GVIKELKDARVKVVMITGDNIQTAISVAKECGI-------IDPG--------- 389
V+ ++ V+VV G +Q A+ E G I+PG
Sbjct: 1768 AALASLADVM-SIESL-VEVVFYRGMTMQVAVP-RDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 390 --ETVVD-VSAVPGGLKE-----CP-KVYFTVSG-VSAIQTKAKKLNYSKT 430
+ VV+ V G L E + Y +G + A+ T LN+ K
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYV-AAGDLRALDTVTNVLNFIKL 1874
Score = 47.4 bits (112), Expect = 1e-05
Identities = 85/542 (15%), Positives = 151/542 (27%), Gaps = 182/542 (33%)
Query: 91 LIPSEFIIQFLQLR--FPPNMQFP---------------LIVIYLAICNFVLSLFIENFI 133
L+P+ QL+ F + P L+ +L +V SL + +
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG---YVSSLVEPSKV 77
Query: 134 IHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDI--VI 191
+ ++ E ++ Y L G DI +
Sbjct: 78 GQFDQVLNL--------------CLTEFENCY---------------LEGN---DIHALA 105
Query: 192 KSLDIITIVIPPALPATMTVGKLY--ALTRLKKYNISCINSRVINLMTVG--KLYA---- 243
L L T + K Y A K+ NS + + G +L A
Sbjct: 106 AKLLQEN---DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 244 -------LTRLKK-YNIS-CINSRVINVSGSI----------NCVCFDKMFESTGWTLEE 284
L+ Y + +I S F + W LE
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LEN 221
Query: 285 PMKFVPENIVSVLSEYTEQGYRVIALASRTLS---IEDYKHLNYMKREDIEKDLEFLGLI 341
P P+ +Y L S +S I + +Y+ + LG
Sbjct: 222 PSN-TPDK------DY---------LLSIPISCPLIGVIQLAHYV------VTAKLLGFT 259
Query: 342 ILENRLKPQTEGVIKELKDARVKVVMITGD-------NIQTAISVAKECGI--------- 385
E L+ +G + V + D +++ AI+V G+
Sbjct: 260 PGE--LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 386 -IDPGETVVDVSAVPGGLKECPKVYFTVSGVS--AIQTKAKKLNYSKTEEE---LGLSSG 439
+ P ++++ S P ++S ++ +Q K N + + L +G
Sbjct: 318 SLPP--SILEDSLENNEGVPSP--MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 440 AYKFAVTGKSWEL------IR--------DQMPELIP---RIIVKGAIFARMSS------ 476
A V+G L +R DQ IP R + F ++S
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 477 -----------DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI--SLSEA--ESP 521
K + + + V DG++ LR I + + P
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSISERIVDCIIRLP 487
Query: 522 ID 523
+
Sbjct: 488 VK 489
Score = 35.0 bits (80), Expect = 0.073
Identities = 49/321 (15%), Positives = 102/321 (31%), Gaps = 108/321 (33%)
Query: 252 ISCINSRVINVS-GSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIAL 310
+ ++R + +S GS+ L VP + S+ EQ +++
Sbjct: 1 MDAYSTRPLTLSHGSLEH------------VLL-----VPTASFFIASQLQEQFNKILPE 43
Query: 311 ASRTLSIEDYKHLNYMKREDIEK-DL--EFLGLIILENRLKPQTEGVIKELKDARVKVVM 367
+ + +D E +L +FLG + + ++P G ++ + + +
Sbjct: 44 PTEGFAADD---------EPTTPAELVGKFLGYV--SSLVEPSKVGQFDQV----LNLCL 88
Query: 368 -------ITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVS---- 416
+ G++I + + + + KE K Y T ++
Sbjct: 89 TEFENCYLEGNDIHALAA-----------KLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 417 ----------AIQTKAKKLNYS------KTE---EEL-GLSSGAYKFAVTGKSWELIR-- 454
A+ +L + T+ EEL L Y V +LI+
Sbjct: 138 DKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDYFEELRDLYQ-TYHVLVG----DLIKFS 191
Query: 455 -DQMPELIPRIIVKGAIFARMSSDQKQQL--------------------VLELQQLGYYV 493
+ + ELI + +F + + + L ++ + QL +YV
Sbjct: 192 AETLSELIRTTLDAEKVFTQ-GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 494 AMCGDGANDCGALRAAHAGIS 514
G LR+ G +
Sbjct: 251 VTAKLLGFTPGELRSYLKGAT 271
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 44.9 bits (107), Expect = 1e-05
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLI 341
I V QG RV+A+A++ L + + + E DL G I
Sbjct: 115 RKIKRVTDTLNRQGLRVVAVATKYLPAREGDY-----QRADESDLILEGYI 160
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
D K+Q V+ + L Y V GD ND L AHAGI
Sbjct: 132 DPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGI 168
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 37.2 bits (87), Expect = 0.007
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 466 VKGAIFARMSSDQKQQLVLEL-QQLGY-YVAMCGDGANDCGALRAAHAGIS 514
S K +++ L ++ + + M GDGA D A A A I
Sbjct: 148 ETQPT---AESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIG 195
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 36.3 bits (84), Expect = 0.014
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 479 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
K ++ EL + Y+ M GD D A + +
Sbjct: 152 KPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCF 186
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 36.3 bits (84), Expect = 0.019
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 466 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 513
V G + +S+ K ++L L QQ GDGAND + AA G+
Sbjct: 236 VLGEV---VSAQTKADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGV 284
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 34.7 bits (80), Expect = 0.060
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 466 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 513
+ I M++ K+Q +++L +L + CGDGAND L A GI
Sbjct: 237 ITLPI---MNAANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGI 285
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 34.9 bits (81), Expect = 0.069
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 363 VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
V T I+ AI VAKE ++ GE++V V +
Sbjct: 459 VPSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKEE 497
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 34.3 bits (79), Expect = 0.074
Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 6/104 (5%)
Query: 288 FVPENIVSVLSEYTEQGYRVIALASR-TLSIEDYKHLNY-----MKREDIEKDLEFLGLI 341
+E + ++ +R L+ E ++ E
Sbjct: 28 LARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRD 87
Query: 342 ILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
++ L Q V++ A ++T N +A+ G+
Sbjct: 88 VIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGV 131
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 33.7 bits (78), Expect = 0.080
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 466 VKGAIFARMSSDQKQQLVLEL-QQLGYY---VAMCGDGANDCGALRAAHAGI 513
V+G + + + K +++ ++ + G GDGAND + A I
Sbjct: 134 VEGEV---LKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKI 182
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 33.7 bits (78), Expect = 0.097
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 466 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 513
V G + M S K +++L L + L + GDGAND + AH I
Sbjct: 133 VTGHM---MFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKI 181
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 34.3 bits (79), Expect = 0.10
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
+ A++V K G G+ V+ ++ G
Sbjct: 505 VDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPG 537
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 34.2 bits (79), Expect = 0.10
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 373 IQTAISVAKECGIIDPGETVVDVSAVPGG 401
I I AKE GI+ G+T V + G
Sbjct: 460 INFGIEKAKEFGILKKGDTYVSIQGFKAG 488
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 33.6 bits (78), Expect = 0.15
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
T D + +A + G+ G+ VV VS
Sbjct: 426 TDDFYRLGKELALQSGLAHKGDVVVMVSGALVP 458
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 33.4 bits (77), Expect = 0.17
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
+ I A+++AKE +I+ G+ + V V
Sbjct: 488 SEVVISNALALAKEESLIESGDFAIAVHGVKES 520
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 33.3 bits (77), Expect = 0.20
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
T I+ AI +AK+ + G++V+ + +
Sbjct: 474 TDIVIRNAIEIAKQRNMAKVGDSVIAIHGIKEE 506
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 32.9 bits (75), Expect = 0.26
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 466 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 513
V G I + K + E Q+ G GDGAND L AA GI
Sbjct: 314 VVGPI---IDRAGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGI 362
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 32.2 bits (74), Expect = 0.48
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
T + A++ A E G + G+ ++ + VP G
Sbjct: 448 TDALLNNAVATAVETGRVTNGDLIIITAGVPTG 480
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 31.8 bits (73), Expect = 0.55
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 353 GVIKELKDARVKVVMITGDN-IQTAISVAKECGIIDPGETVVDVSAVPGG 401
GV DA ++ + + AK G + G+ V + A
Sbjct: 437 GVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKV 486
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 31.6 bits (72), Expect = 0.67
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMIT-GDNIQTAISVAKECGIID 387
+ +E L +++++ +P+ + +I+E+++A +V +I+ GD + AIS A I
Sbjct: 198 RSIEELVVVVMD---RPRHKELIQEIRNAGARVRLISDGD-VSAAISCAFSGTNIH 249
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 31.1 bits (71), Expect = 0.74
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 328 REDIEK-----DLEF-LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK 381
+I + D F + L +L + + +A ++VV G++ I+ +
Sbjct: 56 AAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDPGEHIAEFR 115
Query: 382 ECGII 386
G+
Sbjct: 116 RHGVK 120
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A
{Streptococcus pyogenes}
Length = 121
Score = 29.9 bits (67), Expect = 0.80
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 356 KELKDARVKVVMITGDNIQTAISVAK-ECGIIDPGE-TVVDVSAVPGGLKECPKVYFTVS 413
KEL A +++ +G I T IS + + + PG+ T V+ +A P G + + FTV+
Sbjct: 40 KELAGATMELRDSSGKTISTWISDGQVKDFYLMPGKYTFVETAA-PDGYEVATAITFTVN 98
Query: 414 GVSAIQTKAKKLN 426
+ K
Sbjct: 99 EQGQVTVNGKATK 111
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S
genomics, national institute of allergy and infectious
DISE (niaid); 1.70A {Francisella tularensis subsp}
Length = 219
Score = 30.7 bits (70), Expect = 0.90
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 466 VKGAIFARMSSDQK-QQLVLELQQLGYYVAMCGDGANDCGALRAAHAG 512
K + + D K + V GDG D +A
Sbjct: 139 FKELDNSNGACDSKLSAFDKAKGLIDGEVIAIGDGYTDYQLYEKGYAT 186
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 30.7 bits (70), Expect = 1.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMIT-GDNIQTAISVAKECGIID 387
K L L + IL KP+ + VI E++ V+V I GD + +I +D
Sbjct: 154 KPLSELTVTILA---KPRHDAVIAEMQQLGVRVFAIPDGD-VAASILTCMPDSEVD 205
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 30.6 bits (70), Expect = 1.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
T + + A+ A G++ G+ VV + VP G
Sbjct: 429 TDEMLDVAVDAAVRSGLVKHGDLVVITAGVPVG 461
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 29.8 bits (68), Expect = 1.8
Identities = 5/50 (10%), Positives = 23/50 (46%)
Query: 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 393
+ + + + +++ +++V+ +G + +A E + + G ++
Sbjct: 20 KKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFIL 69
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 29.6 bits (67), Expect = 2.3
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 32/156 (20%)
Query: 289 VPENIVSVLSEYTE------QGYRVIALASRTLSIEDYKHL---NYMKREDIEKDLEFLG 339
+P+ VS +E +++ + + + + K L Y ++ E L L
Sbjct: 1 LPQRWVSAGGSLSEWVVALGGESKLVGVDTTSQHPQALKQLPSVGYQRQLAAEGVLA-LR 59
Query: 340 --LIILENRLKPQTEGVIKELKDARVKVVMI----TGDNIQTAI-SVAKECGIIDPGETV 392
++I + P V+K+L+ A V+V + + +++ + + G+ E
Sbjct: 60 PDILIGTEEMGPPP--VLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVPQRAEAA 117
Query: 393 VD------------VSAVPGGLKECPKVYFTVSGVS 416
++A P V +
Sbjct: 118 ELDYRQRLRRQADWIAAAQKSQPA-PGVLLVIGNAG 152
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 29.4 bits (67), Expect = 2.4
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 393
++ + P + I + V VV+ TG + KE + PG+ +
Sbjct: 20 DHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCI 69
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 29.7 bits (66), Expect = 2.5
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 20/168 (11%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKECGIIDPGE 390
D F G+ + +++ VK ++TG +I AI + + P +
Sbjct: 23 DPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDLSPLK 82
Query: 391 TVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGA---YKFAVTG 447
+ P + E ++I + Y+ E L + +
Sbjct: 83 LYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYN---ESLYAKVISNPSFAQGKLK 139
Query: 448 KSWELIRDQMPELIPRIIVKGAI------FARM--SSDQKQQLVLELQ 487
+ ++L+ Q +I + R SS + Q++ E Q
Sbjct: 140 ELYDLMNQQAKPHDTSFR---SIGEIGLDYDRFHYSSKEMQKVFFEEQ 184
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC
transporter, transport protein; HET: TPS; 2.25A
{Escherichia coli}
Length = 330
Score = 29.5 bits (66), Expect = 2.7
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 366 VMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL 425
V++ DN + A + G+ D VPGG V F + + K K
Sbjct: 81 VVLGLDN--NLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLK 138
Query: 426 NYSKTEEELGLSSGAYKFAV 445
N ++ +EL S ++
Sbjct: 139 NPPQSLKELVESDQNWRVIY 158
>2qya_A Uncharacterized conserved protein; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.17A
{Methanopyrus kandleri AV19}
Length = 124
Score = 28.0 bits (62), Expect = 3.3
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAV 398
G + +R + ++E +D + + G+ A SV + G+ + + ++ V
Sbjct: 47 GKSMEPDRAAKKIREAVQEYEDEKTVAINALGEL---ACSVVVDAGLARE-DEIGELGGV 102
Query: 399 P 399
P
Sbjct: 103 P 103
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 29.1 bits (66), Expect = 3.3
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP + ++ + + VMI GD+I + A+ CG+
Sbjct: 190 KPSPEFFKSALQAIGVEAHQAVMI-GDDIVGDVGGAQRCGM 229
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C;
calmodulin-bound, coiled coil, acetylation, methylation,
phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB:
3oxq_E
Length = 81
Score = 27.1 bits (60), Expect = 3.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 169 KLSSDPEPNYEILRG--RSLWDIV-IKSLDIITIVIPPALPATMTVGKLYA 216
K + E E LR + +W +K LD V+PPA +TVGK YA
Sbjct: 18 KTEGNLEQANEELRAIIKKIWKRTSMKLLDQ---VVPPAGDDEVTVGKFYA 65
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 28.8 bits (65), Expect = 4.0
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKE 382
D F G+ + + + VI + VK MITG N+Q A+ +A+
Sbjct: 12 DPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQT 63
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 28.9 bits (65), Expect = 4.5
Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKE 382
D + G ++ + + V++ + + ++IT + AI + +
Sbjct: 37 DDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINK 88
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 28.6 bits (64), Expect = 4.7
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 192 KSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYN 251
K L+ +T+ + + + L A L I +N + K L K
Sbjct: 44 KELEGVTVALERCVSQSRG---LAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAG 100
Query: 252 I 252
+
Sbjct: 101 L 101
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
unknown function, HAD superfamily hydro PSI-2; 1.55A
{Streptococcus agalactiae serogroup V} PDB: 1ys9_A
1wvi_A 1ydf_A
Length = 264
Score = 28.3 bits (64), Expect = 5.4
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP ++ L R + VM+ GDN T I I
Sbjct: 182 KPNAIIMNKALEILNIPRNQAVMV-GDNYLTDIMAGINNDI 221
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI
acetate kinase, transferase; HET: PGE; 1.90A
{Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Length = 391
Score = 28.6 bits (65), Expect = 5.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 328 REDIEKDLEFLGLIILE--NRLKPQTEGVIKELKDARVKVVMI 368
R D +E LG+++ E N + I D+ + V+++
Sbjct: 332 RRDAVSGMEELGIVLDERRNLAGGKGARQI-SADDSPITVLVV 373
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative; 2.80A
{Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 28.3 bits (64), Expect = 5.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP+ E I L + +V+M+ GDN +T I + GI
Sbjct: 183 KPKAIIMERAIAHLGVEKEQVIMV-GDNYETDIQSGIQNGI 222
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 28.4 bits (64), Expect = 6.1
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP E + + + +M+ GD ++T I CG+
Sbjct: 215 KPSPYMFECITENFSIDPARTLMV-GDRLETDILFGHRCGM 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 6.2
Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 12/28 (42%)
Query: 327 KREDIEKDLEFLGLIILENRLK---PQT 351
+++ ++K L+ LK +
Sbjct: 18 EKQALKK---------LQASLKLYADDS 36
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 28.3 bits (64), Expect = 6.6
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP + + ++ + ++ M+ GD + T + + K GI
Sbjct: 195 KPNPLVVDVISEKFGVPKERMAMV-GDRLYTDVKLGKNAGI 234
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 28.3 bits (64), Expect = 6.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 20/58 (34%)
Query: 329 EDI--EKDLEFLGLIILENR------LKPQTEGVIKELKDA--------RVKVVMITG 370
EDI EK + + I + NR +P T +KE+ A + V+++TG
Sbjct: 27 EDIRYEKSTDGIAKITI-NRPQVRNAFRPLT---VKEMIQALADARYDDNIGVIILTG 80
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 27.9 bits (63), Expect = 7.7
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 25/70 (35%)
Query: 316 SIEDYKHLNYMKREDIEKDLEFLGLIILENR------LKPQTEGVIKELKDA-------- 361
++ +Y + Y E I + + NR P+T + E+ DA
Sbjct: 8 TLREYDEIKYEFYEGI-------AKVTI-NRPEVRNAFTPKT---VAEMIDAFSRARDDQ 56
Query: 362 RVKVVMITGD 371
V V+++TG+
Sbjct: 57 NVSVIVLTGE 66
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 27.9 bits (63), Expect = 7.9
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP+ +++ A + VMI GD+ + + A+ G+
Sbjct: 179 KPEKTFFLEALRDADCAPEEAVMI-GDDCRDDVDGAQNIGM 218
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC,
protein structure initia YORK SGX research center for
structural genomics; 1.60A {Bacillus subtilis}
Length = 266
Score = 27.9 bits (63), Expect = 8.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP++ E ++ L + +M+ GDN T I G+
Sbjct: 183 KPESIIMEQAMRVLGTDVSETLMV-GDNYATDIMAGINAGM 222
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 27.9 bits (61), Expect = 8.0
Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 293 IVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTE 352
+++++ EY Y + + +D+ + E+ E +++L+ L
Sbjct: 127 MLNIMEEY--DWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDS 184
Query: 353 GVIKELKDARVKVVMI--TGDNIQTAISVAKECGIIDPGETVVDVSAVPGGL 402
+ +LK + ++++ T + VA G+ G T + S V G
Sbjct: 185 KIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDT 236
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 27.9 bits (63), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 388 PGETVVDVSAVPGG 401
PGE V D++A PGG
Sbjct: 118 PGEIVADMAAAPGG 131
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 28.1 bits (63), Expect = 8.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 388 PGETVVDVSAVPGG 401
PGE V+D++A PGG
Sbjct: 101 PGERVLDLAAAPGG 114
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 27.8 bits (61), Expect = 9.0
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 339 GLIILENRLKPQTEGV---IKELKDARVKVVMITGDNIQTAISVAKECGIID--PGETVV 393
G I E L+P + V + +LK A ++ + TG + + G++ + +
Sbjct: 206 GYIYQEIILRP-VDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIA 264
Query: 394 DVSAVPGGLKECP 406
S V P
Sbjct: 265 TASDVLEAENMYP 277
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural
genomics, PSI-biology, protein structure initiative; NMR
{Thermotoga maritima}
Length = 106
Score = 26.4 bits (59), Expect = 9.3
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 25/77 (32%)
Query: 354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS 413
+++L+D R+K +T + V++S + VY +
Sbjct: 22 ALQQLRDPRLKKDFVT---F-----------------SRVELS---KDKRYA-DVYVSFL 57
Query: 414 GVSAIQTKAKK-LNYSK 429
G + + + LN +K
Sbjct: 58 GTPEERKETVEILNRAK 74
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 27.5 bits (62), Expect = 9.4
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 388
T+ I+ +K + V ++T + ++A +AK +
Sbjct: 26 QATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAK 65
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown
function, uncharacterized protein, signal receiver
domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Length = 137
Score = 26.7 bits (60), Expect = 9.4
Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 291 ENIVSVLSEY-TEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKP 349
++ + +Y ++ Y + + + + + +++R + LIIL+ +L P
Sbjct: 14 TSLAILYKQYVKDEPYDIFHVET---GRDA---IQFIERSKPQ-------LIILDLKL-P 59
Query: 350 QTEG--VIKELK--DARVKVVMITG-DNIQTAIS 378
G V+ + D V++ T ++ A++
Sbjct: 60 DMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVN 93
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 27.6 bits (62), Expect = 9.6
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 355 IKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDV 395
+ + TG + +A + K+ G+++P + V
Sbjct: 27 YLGDRRGNFYLAYATGRSYHSARELQKQVGLMEPDYWLTAV 67
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus}
Length = 268
Score = 27.5 bits (62), Expect = 9.7
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 348 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
KP + L V ++ GD I ++ K G
Sbjct: 187 KPSEVIMREALDILGLDAKDVAVV-GDQIDVDVAAGKAIGA 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.413
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,066,536
Number of extensions: 501024
Number of successful extensions: 1825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 120
Length of query: 523
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 425
Effective length of database: 3,965,535
Effective search space: 1685352375
Effective search space used: 1685352375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.6 bits)