RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy78
(523 letters)
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 72.1 bits (176), Expect = 2e-15
Identities = 42/185 (22%), Positives = 64/185 (34%), Gaps = 51/185 (27%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 393
D + + + G I+ +DA ++V+MITGDN TAI++ + GI E V
Sbjct: 8 DKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 67
Query: 394 DVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELI 453
D + TG+ ++ +
Sbjct: 68 DRA------------------------------------------------YTGREFDDL 79
Query: 454 RDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
R FAR+ K ++V LQ AM GDG ND AL+ A GI
Sbjct: 80 PLAEQREACRRAC---CFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGI 136
Query: 514 SLSEA 518
++
Sbjct: 137 AMGSG 141
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 63.7 bits (154), Expect = 2e-11
Identities = 24/223 (10%), Positives = 52/223 (23%), Gaps = 55/223 (24%)
Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK-- 348
++ L ++ Y+ L S+ + K + G I E L+
Sbjct: 167 FSLKGALWTLAQEVYQEWYLGSKLYEDVEKKI---------ARTTFKTGYIYQEIILRPV 217
Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
+ + ++ +LK A ++ + TG + + G++ E
Sbjct: 218 DEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIA---------TASD 268
Query: 409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 468
+ K N P +
Sbjct: 269 VLEAENMYPQARPLGKPN-----------------------------------PFSYIAA 293
Query: 469 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHA 511
+ + V + GD D + + A
Sbjct: 294 LYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGA 336
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 46.0 bits (108), Expect = 3e-06
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 299 EYTEQGYRVIALASRTLSIEDYKHL--NYMKREDIEKDLEFLGLI 341
R +ALA+R + + + + + + E DL F+G++
Sbjct: 193 GTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVV 237
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 45.6 bits (107), Expect = 4e-06
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 283 EEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKH---LNYMKREDIEKDLEFLG 339
K + + + E G RV+ L + + + + L F+G
Sbjct: 143 IPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVG 202
Query: 340 LIILE 344
L+ +
Sbjct: 203 LMSMI 207
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 42.3 bits (98), Expect = 6e-05
Identities = 23/186 (12%), Positives = 58/186 (31%), Gaps = 9/186 (4%)
Query: 340 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399
+ + + I+ + + ++++TG+ +Q A + + G P +
Sbjct: 13 ITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISY 72
Query: 400 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 459
+ K+ ++T + + E +R+ + E
Sbjct: 73 KKKRIFLASMDEE--WILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINE 130
Query: 460 LIPR-IIVKGAIFARMSSDQKQQLVLELQQLGYY------VAMCGDGANDCGALRAAHAG 512
L + V + + + + VA GDG ND A +
Sbjct: 131 LNLNLVAVDSGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYK 190
Query: 513 ISLSEA 518
+++++A
Sbjct: 191 VAVAQA 196
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 38.9 bits (90), Expect = 2e-04
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC 383
D + LK + ++ELK +KV MITGDN ++A ++++E
Sbjct: 9 DKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 58
Score = 36.6 bits (84), Expect = 0.001
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 461 IPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
I R + + A + QK + V +LQ VA GDG ND AL A GI++
Sbjct: 54 ISRELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIAVGSG 110
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 40.0 bits (92), Expect = 3e-04
Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 7/188 (3%)
Query: 340 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399
L + + + I+ + + V +++G+ I ++ GI P + +
Sbjct: 14 LTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGP--VFGENGGIM 71
Query: 400 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 459
K +F+ G + + K ++ + F + + + +R +
Sbjct: 72 FDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAES 131
Query: 460 LIPRIIVKGAIFARMSSDQKQQLVLELQQLGYY-----VAMCGDGANDCGALRAAHAGIS 514
I G + M+ + + + + Y + + GD ND +
Sbjct: 132 RGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKAC 191
Query: 515 LSEAESPI 522
+ A I
Sbjct: 192 PANATDNI 199
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 34.2 bits (77), Expect = 0.022
Identities = 11/64 (17%), Positives = 19/64 (29%)
Query: 451 ELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAH 510
D I + K ++ EL + Y+ M GD D A + +
Sbjct: 122 HASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSD 181
Query: 511 AGIS 514
+
Sbjct: 182 LCFA 185
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 31.4 bits (71), Expect = 0.081
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
T D + +A + G+ G+ VV VS
Sbjct: 73 TDDFYRLGKELALQSGLAHKGDVVVMVSGALVP 105
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 31.1 bits (70), Expect = 0.12
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 373 IQTAISVAKECGIIDPGETVVDVSAVPGG 401
I I AKE GI+ G+T V + G
Sbjct: 94 INFGIEKAKEFGILKKGDTYVSIQGFKAG 122
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 31.9 bits (71), Expect = 0.15
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 393
++ + P + I + V VV+ TG + KE + PG+ +
Sbjct: 19 DHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCI 68
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 30.7 bits (69), Expect = 0.18
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 359 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
+ +Q I K G + G+ V+ V+ G
Sbjct: 80 EPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPG 122
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 135
Score = 30.4 bits (68), Expect = 0.20
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 359 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
+ + A++V K G G+ V+ ++ G
Sbjct: 80 DPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWRPG 122
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain
{Leishmania mexicana [TaxId: 5665]}
Length = 141
Score = 29.2 bits (65), Expect = 0.58
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
+ + AK G + G+ V + A
Sbjct: 96 KEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKV 128
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 29.5 bits (65), Expect = 0.77
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 465 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
+ +L+ E + M GDGA D A A A I
Sbjct: 143 DETQPTAESGGKGKVIKLLKEKFHFKKII-MIGDGATDMEACPPADAFI 190
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 28.7 bits (63), Expect = 1.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 486 LQQLGYYVAMCGDGANDCGALRAAHAGI 513
+ L Y V GD ND L AHAGI
Sbjct: 141 FKSLYYRVIAAGDSYNDTTMLSEAHAGI 168
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 28.8 bits (63), Expect = 1.4
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 388
+P+ +ELK +K V+ +G+ IS E
Sbjct: 22 QPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEIS 62
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 28.4 bits (62), Expect = 2.3
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG 389
+ ++ + IKE + V + TG + +S E +
Sbjct: 26 DIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMN 71
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 28.4 bits (62), Expect = 2.4
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 388
++++ + E +++ + ++VV+ TG +S+ + GI
Sbjct: 16 KHQVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTW 60
Score = 28.0 bits (61), Expect = 2.6
Identities = 40/265 (15%), Positives = 79/265 (29%), Gaps = 37/265 (13%)
Query: 281 TLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGL 340
TL V + L + G V+ R + I + L
Sbjct: 11 TLLNSKHQVSLENENALRQAQRDGIEVVVSTGRA----------HFDVMSIFEPLGIKTW 60
Query: 341 IILENRL----------------KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG 384
+I N K + ++ L+ + TG I T + +
Sbjct: 61 VISANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGSAIYTPQNGRELLD 120
Query: 385 IIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFA 444
+ + A LK+ +V ++ SG + I + + + + + ++
Sbjct: 121 VELDRFRSANPEADLSVLKQAAEVQYSQSGFAYINSFQELFEADEPIDFYNILGFSFFKE 180
Query: 445 VTGKSWELIRDQMPELIPR-------IIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCG 497
W+ + + + A + +QL + L++ A G
Sbjct: 181 KLEAGWKRYEHAEDLTLVSSAEHNFELSSRKASKGQALKRLAKQLNIPLEE----TAAVG 236
Query: 498 DGANDCGALRAAHAGISLSEAESPI 522
D ND L AA G+++ A I
Sbjct: 237 DSLNDKSMLEAAGKGVAMGNAREDI 261
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 28.1 bits (61), Expect = 2.5
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 145 WSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLD----IITIV 200
+ + + N ++ P++ + E GR +I + I+
Sbjct: 192 QEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEA--GRQAACQLIAQVTGRSEPQQII 249
Query: 201 IPPAL 205
IP L
Sbjct: 250 IPATL 254
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 183
Score = 26.9 bits (59), Expect = 5.2
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 344 ENRLKPQTEGVIKELKDAR--VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 401
E K Q E V+KEL + +I G I+ + + PG ++D++ GG
Sbjct: 98 EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLIT-EEMVTKMKPGSVIIDLAVEAGG 156
Query: 402 LKECPKV--YFTVSGV 415
+ GV
Sbjct: 157 NCPLSEPGKIVVKHGV 172
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 26.9 bits (58), Expect = 5.5
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 342 ILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 388
++ + +I+ELKD +++ + KE + P
Sbjct: 13 LIPGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVETP 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.413
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,990,296
Number of extensions: 98028
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 34
Length of query: 523
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 434
Effective length of database: 1,185,626
Effective search space: 514561684
Effective search space used: 514561684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.3 bits)