BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7809
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 179/325 (55%), Gaps = 45/325 (13%)
Query: 32 RRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRG 91
R + L L+ +IV T V +DDIAG D KQ +E ++LP L P+LF G+ P RG
Sbjct: 91 RNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARG 150
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
+LLFGPPG GKT+LAKAVA++ +TFFN+ +SLTSK+ GE EKLVRALF AR P++
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSI 210
Query: 152 IFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL 209
IFID+VD+ R EH+A+RR++ E L DGV + +GD VLV+ ATN P +LDEA+
Sbjct: 211 IFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLVMGATNRPQELDEAV 269
Query: 210 KRRFEKRISPIQIIGLCLGEIRKDPNV-------------DVATLSKQLIGYSGSDIRDL 256
RRF KR+ + L E R ++A L++ GYSGSD+ L
Sbjct: 270 LRRFIKRV----YVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325
Query: 257 CQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFER 316
++ L RE+ P+ N+ A S+ + S F
Sbjct: 326 AKDAALGPIREL------------KPEQVKNMSA-------------SEMRNIRLSDFTE 360
Query: 317 AKEKCRKSVDGALIRKYKRWNELYG 341
+ +K ++SV + Y RWN+ +G
Sbjct: 361 SLKKIKRSVSPQTLEAYIRWNKDFG 385
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 164/278 (58%), Gaps = 14/278 (5%)
Query: 35 NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILL 94
N +L + I+ V W+D+AGL+ K+ KE ++LP P LFKG +P GILL
Sbjct: 30 NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILL 89
Query: 95 FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFI 154
+GPPGTGK+ LAKAVA++ STFF+V S L SK GESEKLV+ LF AR P++IFI
Sbjct: 90 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 149
Query: 155 DEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR 212
D+VDA G E EA+RR++ ELL M+GVG S +GVLVL ATN PW LD A++RR
Sbjct: 150 DQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRR 207
Query: 213 FEKRIS---PIQIIGLCLGEIR--KDPNV----DVATLSKQLIGYSGSDIRDLCQEIILI 263
FE+RI P + EI P+V D TL GYSGSDI + ++ ++
Sbjct: 208 FERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267
Query: 264 AAREVIQNAGFTGVNSKPPDGRN-NIGAKGDDSKCQVA 300
R++ F V+++ + R + GDD +++
Sbjct: 268 PIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMS 305
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 161/273 (58%), Gaps = 16/273 (5%)
Query: 41 LVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGT 100
LV + + V W+D+AGL+ K+ KE ++LP P LFKG +P GILL+GPPGT
Sbjct: 12 LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT 71
Query: 101 GKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF 160
GK+ LAKAVA++ STFF+V S L SK GESEKLV+ LF AR P++IFIDEVDA
Sbjct: 72 GKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
Query: 161 CS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS 218
G E EA+RR++ ELL M+GVG S +GVLVL ATN PW LD A++RRFE+RI
Sbjct: 132 TGTRGEGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRRFERRIY 189
Query: 219 PIQIIGLCLGEIRKDPNV----------DVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268
I + L + NV D TL GYSGSDI + ++ ++ R++
Sbjct: 190 -IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 248
Query: 269 IQNAGFTGVNSKPPDGRN-NIGAKGDDSKCQVA 300
F V+++ + R + GDD +++
Sbjct: 249 QSATHFKDVSTEDDETRKLTPCSPGDDGAIEMS 281
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 163/279 (58%), Gaps = 16/279 (5%)
Query: 35 NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILL 94
N +L + I+ V W+D+AGL+ K+ KE ++LP P LFKG +P GILL
Sbjct: 15 NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILL 74
Query: 95 FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFI 154
+GPPGTGK+ LAKAVA++ STFF+V S L SK GESEKLV+ LF AR P++IFI
Sbjct: 75 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 134
Query: 155 DEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR 212
D+VDA G E EA+RR++ ELL M+GVG S +GVLVL ATN PW LD A++RR
Sbjct: 135 DQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRR 192
Query: 213 FEKRISPIQIIGLCLGEIRKDPNV----------DVATLSKQLIGYSGSDIRDLCQEIIL 262
FE+RI I + L + NV D TL GYSGSDI + ++ ++
Sbjct: 193 FERRIY-IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 251
Query: 263 IAAREVIQNAGFTGVNSKPPDGRN-NIGAKGDDSKCQVA 300
R++ F V+++ + R + GDD +++
Sbjct: 252 QPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMS 290
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 175/321 (54%), Gaps = 37/321 (11%)
Query: 32 RRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRG 91
+ P++ L+ +I+ V W+DIAG++ K KE ++ P L P +F G+ P +G
Sbjct: 60 KNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKG 119
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
ILLFGPPGTGKTL+ K +ASQ G+TFF++ SSLTSK GE EK+VRALF AR + PAV
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAV 179
Query: 152 IFIDEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL 209
IFIDE+D+ S G EHE++RR++ E L +DG T S D+ +LV+ ATN P ++DEA
Sbjct: 180 IFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR-ILVVGATNRPQEIDEAA 238
Query: 210 KRRFEKRIS-PIQ--------IIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEI 260
+RR KR+ P+ +I L E ++ + +Q +SG+D+ LC+E
Sbjct: 239 RRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298
Query: 261 ILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEK 320
L R +Q A + PD QV P+ FE A
Sbjct: 299 SLGPIRS-LQTADIATIT---PD--------------QVRPIA-------YIDFENAFRT 333
Query: 321 CRKSVDGALIRKYKRWNELYG 341
R SV + Y+ WN+ +G
Sbjct: 334 VRPSVSPKDLELYENWNKTFG 354
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 179/314 (57%), Gaps = 21/314 (6%)
Query: 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
I+ V W+D+AGL+ K+ KE ++LP P LFKG +P GILL+GPPGTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 106 AKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--G 163
AKAVA++ STFF+V S L SK GESEKLV+ LF AR P++IFID+VDA G
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQII 223
E EA+RR++ ELL M+GVG S +GVLVL ATN PW LD A++RRFE+RI I +
Sbjct: 128 EGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRRFERRIY-IPLP 184
Query: 224 GLCLGEIRKDPNV----------DVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273
L + NV D TL GYSGSDI + ++ ++ R++
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244
Query: 274 FTGVNSKPPDGRN-NIGAKGDDSKCQVA--PLGSDRIV---LNRSHFERAKEKCRKSVDG 327
F V+++ + R + GDD +++ + +D + L F +A + R +V+
Sbjct: 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 304
Query: 328 ALIRKYKRWNELYG 341
+ K +++ +G
Sbjct: 305 DDLLKQEQFTRDFG 318
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 149/245 (60%), Gaps = 16/245 (6%)
Query: 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
IV V W D+AGL+ K+ KE ++LP P LF G PWRGILLFGPPGTGK+ L
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183
Query: 106 AKAVASQ-HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164
AKAVA++ + STFF++ S L SK GESEKLV+ LF+ AR P++IFIDE+D+ C GS
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC-GS 242
Query: 165 R---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-PI 220
R E EA RR++ E L M GVG + G+LVL ATN PW LD A++RRFEKRI P+
Sbjct: 243 RSENESEAARRIKTEFLVQMQGVGV--DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 300
Query: 221 -------QIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA 272
+ L LG + D L ++ GYSG+DI + ++ ++ R+V
Sbjct: 301 PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 360
Query: 273 GFTGV 277
F V
Sbjct: 361 HFKKV 365
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 149/245 (60%), Gaps = 16/245 (6%)
Query: 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
IV V W D+AGL+ K+ KE ++LP P LF G PWRGILLFGPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 106 AKAVASQ-HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164
AKAVA++ + STFF++ S L SK GESEKLV+ LF+ AR P++IFIDE+D+ C GS
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC-GS 120
Query: 165 R---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-PI 220
R E EA RR++ E L M GVG + G+LVL ATN PW LD A++RRFEKRI P+
Sbjct: 121 RSENESEAARRIKTEFLVQMQGVGV--DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 178
Query: 221 -------QIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA 272
+ L LG + D L ++ GYSG+DI + ++ ++ R+V
Sbjct: 179 PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238
Query: 273 GFTGV 277
F V
Sbjct: 239 HFKKV 243
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 176/317 (55%), Gaps = 38/317 (11%)
Query: 37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
+L L+ +IV+ V W DIAG D KQ +E ++LP + P+LF G+ P +G+LLFG
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
PPG GKTLLA+AVA++ +TF N+ +SLTSK+ G+ EKLVRALF AR P++IFIDE
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 157 VDAFCSGSRE--HEATRRVRCELLSHMDGV-GTGSGDKGVLVLAATNHPWDLDEALKRRF 213
VD+ S HEA+RR++ E L DG+ G GD+ ++VLAATN P +LDEA RRF
Sbjct: 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR-IVVLAATNRPQELDEAALRRF 180
Query: 214 EKRISPI----QIIGLCLGEIRKDPNVDVAT-----LSKQLIGYSGSDIRDLCQEIILIA 264
KR+ Q L L + + + T L+K GYSGSD+ L ++ L
Sbjct: 181 TKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240
Query: 265 AREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324
RE+ N+ + KC + + R + F + ++ R+S
Sbjct: 241 IREL------------------NV----EQVKC--LDISAMRAI-TEQDFHSSLKRIRRS 275
Query: 325 VDGALIRKYKRWNELYG 341
V + Y++W++ YG
Sbjct: 276 VAPQSLNSYEKWSQDYG 292
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28 VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
V P+ + E + +D ++ VG+DDI G KE + LP P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
+P RGILL+GPPGTGKTL+A+AVA++ G+ FF + + SK GESE +R FE A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
APA+IFIDE+DA + H E RR+ +LL+ MDG+ + V+V+AATN P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
+D AL+R RF++ + ++I+ + ++ +VD+ ++ + G+ G+D+
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
LC E L A R+
Sbjct: 413 ALCSEAALQAIRK 425
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 31/300 (10%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLF-KGILRPWRGILLFGPPGTGKTLLAKAVAS 111
V W+DI GL++VK+ +E + P P F K + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SRE 166
+ + F ++ L + +GESE VR +F+ AR AP V+F DE+D+
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS-PI--- 220
A RV ++L+ MDG+ T K V ++ ATN P +D A+ R R ++ I P+
Sbjct: 594 GGAADRVINQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 221 -QIIGLCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276
+ + +RK P +VD+ L+K G+SG+D+ ++CQ +A RE I++
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Query: 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336
+ + + + DD ++ R HFE A R+SV IRKY+ +
Sbjct: 711 RERQT--NPSAMEVEEDDPVPEI----------RRDHFEEAMRFARRSVSDNDIRKYEMF 758
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28 VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
V P+ + E + +D ++ VG+DDI G KE + LP P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
+P RGILL+GPPGTGKTL+A+AVA++ G+ FF + + SK GESE +R FE A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
APA+IFIDE+DA + H E RR+ +LL+ MDG+ + V+V+AATN P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
+D AL+R RF++ + ++I+ + ++ +VD+ ++ + G+ G+D+
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
LC E L A R+
Sbjct: 413 ALCSEAALQAIRK 425
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28 VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
V P+ + E + +D ++ VG+DDI G KE + LP P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
+P RGILL+GPPGTGKTL+A+AVA++ G+ FF + + SK GESE +R FE A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
APA+IFIDE+DA + H E RR+ +LL+ MDG+ + V+V+AATN P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
+D AL+R RF++ + ++I+ + ++ +VD+ ++ + G+ G+D+
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
LC E L A R+
Sbjct: 413 ALCSEAALQAIRK 425
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28 VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
V P+ + E + +D ++ VG+DDI G KE + LP P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
+P RGILL+GPPGTGKTL+A+AVA++ G+ FF + + SK GESE +R FE A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
APA+IFIDE+DA + H E RR+ +LL+ MDG+ + V+V+AATN P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
+D AL+R RF++ + ++I+ + ++ +VD+ ++ + G+ G+D+
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
LC E L A R+
Sbjct: 413 ALCSEAALQAIRK 425
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28 VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
V P+ + E + +D ++ VG+DD+ G KE + LP P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
+P RGILL+GPPGTGKTL+A+AVA++ G+ FF + + SK GESE +R FE A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
APA+IFIDE+DA + H E RR+ +LL+ MDG+ + V+V+AATN P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
+D AL+R RF++ + ++I+ + ++ +VD+ ++ + G+ G+D+
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
LC E L A R+
Sbjct: 413 ALCSEAALQAIRK 425
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28 VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
V P+ + E + +D ++ VG+DD+ G KE + LP P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
+P RGILL+GPPGTGKTL+A+AVA++ G+ FF + + SK GESE +R FE A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
APA+IFIDE+DA + H E RR+ +LL+ MDG+ + V+V+AATN P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
+D AL+R RF++ + ++I+ + ++ +VD+ ++ + G+ G+D+
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
LC E L A R+
Sbjct: 413 ALCSEAALQAIRK 425
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 31/300 (10%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLF-KGILRPWRGILLFGPPGTGKTLLAKAVAS 111
V W+DI GL++VK+ +E + P P F K + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SRE 166
+ + F ++ L + +GESE VR +F+ AR AP V+F DE+D+
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS-PI--- 220
A RV ++L+ MDG+ T K V ++ ATN P +D A+ R R ++ I P+
Sbjct: 594 GGAADRVINQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 221 -QIIGLCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276
+ + +RK P +VD+ L+K G+SG+D+ ++CQ +A RE I++
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Query: 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336
+ + + + DD ++ R HFE A R+SV IRKY+ +
Sbjct: 711 RERQT--NPSAMEVEEDDPVPEI----------RRDHFEEAMRFARRSVSDNDIRKYEMF 758
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 156/302 (51%), Gaps = 31/302 (10%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLF-KGILRPWRGILLFGPPGTGKTLLAKAVAS 111
V W+DI GL++VK+ +E + P P F K + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SRE 166
+ + F ++ L + +GESE VR +F+ AR AP V+F DE+D+
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS-PI--- 220
A RV ++L+ MDG+ T K V ++ ATN P +D A+ R R ++ I P+
Sbjct: 132 GGAADRVINQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 221 -QIIGLCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276
+ + +RK P +VD+ L+K G+SG+D+ ++CQ +A RE I++
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 248
Query: 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336
+ + + + DD ++ R HFE A R+SV IRKY+ +
Sbjct: 249 RERQ--TNPSAMEVEEDDPVPEI----------RRDHFEEAMRFARRSVSDNDIRKYEMF 296
Query: 337 NE 338
+
Sbjct: 297 AQ 298
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 138/235 (58%), Gaps = 25/235 (10%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
V ++DI GL+ Q +E + LP P+LF+ + + P +GILL+GPPGTGKTLLAKAVA+
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--------G 163
+ +TF V+ S L K GE LV+ +F+ A+ +AP++IFIDE+DA + G
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI---S 218
RE +R +LL+ MDG GD V ++ ATN P LD A+ R RF++ I +
Sbjct: 134 DRE---VQRTLMQLLAEMDGF-DARGD--VKIIGATNRPDILDPAILRPGRFDRIIEVPA 187
Query: 219 P-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268
P ++I+ + ++ +V++ ++K G G++++ +C E + A RE+
Sbjct: 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 21/230 (9%)
Query: 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQH 113
+ DI GL++ Q KE++ LP P+L++ + ++P +G++L+G PGTGKTLLAKAVA+Q
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 114 GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA-----FCSGSREHE 168
+TF ++ S L K+ G+ +L R +F+ A AP+++FIDE+DA + S S
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 169 ATRRVRCELLSHMDGVGTGSGDKG-VLVLAATNHPWDLDEALKR--RFEKRI-------- 217
+R ELL+ +DG D+G V V+ ATN LD AL R R +++I
Sbjct: 301 EIQRTMLELLNQLDGF----DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 218 SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
+ +I+G+ ++ +V++ TL SG+DI+ +C E L+A RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
+ +D I GL + +E + LP P++F+ + ++P +G+LL+GPPGTGKTLLAKAVA+
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA-----FCSGSRE 166
G+ F S + K+ GES +++R +F A+ P +IF+DEVDA F G+
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------ 218
+R ELL+ MDG K ++ ATN P LD AL R R ++++
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTK---IIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 354
Query: 219 --PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
++I + +++K D K G++G+DIR+ E A R+
Sbjct: 355 AGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 27/240 (11%)
Query: 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLA 106
T V W DI L+++++ +L P P FK G++ P G+LL GPPG GKTLLA
Sbjct: 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLA 61
Query: 107 KAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GS 164
KAVA++ G F +V L + + GESE+ VR +F+ A+ AP VIF DEVDA C
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121
Query: 165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIG 224
RE A+ RV +LL+ MDG+ + V ++AATN P +D A+ R R+ +G
Sbjct: 122 RETGASVRVVNQLLTEMDGL---EARQQVFIMAATNRPDIIDPAILR--PGRLDKTLFVG 176
Query: 225 L--------CLGEIRKD---PNVDVATLSKQLIG------YSGSDIRDLCQEIILIAARE 267
L L I K+ P +D + + G Y+G+D+ L +E + A R+
Sbjct: 177 LPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 121/236 (51%), Gaps = 28/236 (11%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
V + D+ GLD KQ +E + LP + L++ I + P RG+LL+GPPGTGKT+L KAVA+
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA-----FCSGSRE 166
+ F V S K+ GE ++VR +F AR AP++IFIDEVD+ F + +
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--------------- 211
+R+ ELL+ MDG + V V+ ATN LD AL R
Sbjct: 289 DREVQRILIELLTQMDGFDQST---NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345
Query: 212 RFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
R E+R+ I G ++ P D+ +L + SG+ I + QE L A R+
Sbjct: 346 RRERRL----IFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 21/230 (9%)
Query: 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLAKAVASQ 112
+D + GL + KE + LP P+LF+ GI +P +G++L+GPPGTGKTLLA+AVA
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKTLLARAVAHH 205
Query: 113 HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----H 167
F V + L K+ GE ++VR LF AR AP++IF+DE+D+ S E
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265
Query: 168 EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI-------- 217
+R ELL+ +DG T K + ++ ATN LD AL R R +++I
Sbjct: 266 SEVQRTMLELLNQLDGFETS---KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322
Query: 218 SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
+ +I+ + ++ +++ +++++ G SG+D++ +C E + A RE
Sbjct: 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 26/234 (11%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
V + D+AG + K+ E + K P+ + + + +G+LL GPPGTGKTLLAKAVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDFLK-YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF---------CS 162
+ FF++ SS G VR LFETA+ +AP++IFIDE+DA S
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 163 GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--- 217
G+ E E T +LL+ MDG GS + V+VLAATN P LD AL R RF++++
Sbjct: 127 GNDEREQTLN---QLLAEMDGF--GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181
Query: 218 -----SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266
++I+ + + ++ +V++ ++K G +G+D+ ++ E L+A R
Sbjct: 182 KPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 25/231 (10%)
Query: 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQH 113
+ D+ GLD + E ++LP FK + +R +G L++GPPGTGKTLLA+A A+Q
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 114 GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC--------SGSR 165
+TF + L + GE KLVR F A+ +AP +IFIDE+DA SG R
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 166 EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI------ 217
E +R ELL+ +DG S D V VLAATN LD AL R R +++I
Sbjct: 300 E---VQRTMLELLNQLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 218 --SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266
S QI+ + ++ D +++ L++ ++G+ ++ + E +IA R
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 23/250 (9%)
Query: 33 RANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRG 91
R +P +T + V+ V + D+ G + + +E + LP L P+ F + + P +G
Sbjct: 190 RIDPSVTMMT----VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKG 245
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
ILL+GPPGTGKTL A+AVA++ +TF V+ S L K+ GE ++VR LFE AR + +
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACI 305
Query: 152 IFIDEVDA-----FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206
IF DE+DA F G+ +R EL++ +DG K V+ ATN P LD
Sbjct: 306 IFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK---VMFATNRPNTLD 362
Query: 207 EALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDL 256
AL R R ++++ I + + + + +S+ +G+++R +
Sbjct: 363 PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSV 422
Query: 257 CQEIILIAAR 266
C E + A R
Sbjct: 423 CTEAGMFAIR 432
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 24/230 (10%)
Query: 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
+ D+AG D K+ E + + + K + +G+L+ GPPGTGKTLLAKA+A +
Sbjct: 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70
Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSGSRE 166
FF + S G VR +FE A+ AP +IFIDE+DA G E
Sbjct: 71 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDE 130
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI------- 217
E T ++L MDG G++G++V+AATN P LD AL R RF++++
Sbjct: 131 REQTLN---QMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 218 -SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266
QI+ + + + P++D A +++ G+SG+D+ +L E L AAR
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 123/234 (52%), Gaps = 26/234 (11%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
V + D+ G + + KE + K P F I R +GILL GPPGTGKTLLA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLK-DPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSG 163
+ FF++ S G VR LF A+A AP ++FIDE+DA G
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--SP 219
E E T +LL MDG + +G++V+AATN P LD AL R RF+K+I P
Sbjct: 132 HDEREQTLN---QLLVEMDGFDS---KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 220 IQIIG---LCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
++G + R P +V++ ++K+ G+ G+D+ +L E L+AARE
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 26/234 (11%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
V + D+ G + + KE + K P F I R +GILL GPPGTG TLLA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLK-DPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSG 163
+ FF++ S G VR LF A+A AP ++FIDE+DA G
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--SP 219
E E T +LL MDG + +G++V+AATN P LD AL R RF+K+I P
Sbjct: 132 HDEREQTLN---QLLVEMDGFDS---KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 220 IQIIG---LCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
++G + R P +V++ ++K+ G+ G+D+ +L E L+AARE
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 129/254 (50%), Gaps = 42/254 (16%)
Query: 52 GVGWDDIAGLDNVK---QIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKA 108
GV + D+AG+ K + F + L P+ QL G P +G LL GPPG GKTLLAKA
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQL--GAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 109 VASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF-------C 161
VA++ F + + G VR+LF+ ARARAP +++IDE+DA
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 162 SGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRISP 219
SG E + + +LL MDG+GT V+VLA+TN LD AL R R ++ +
Sbjct: 119 SGFSNTEEEQTLN-QLLVEMDGMGT---TDHVIVLASTNRADILDGALMRPGRLDRHV-- 172
Query: 220 IQIIGL-CLGEIRKDPNVDVATL---------SKQLI----GYSGSDIRDLCQEIILIAA 265
I L L E R+ + +L S++L G+SG+DI ++C E L AA
Sbjct: 173 --FIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAA 230
Query: 266 REVIQNAGFTGVNS 279
RE G T V++
Sbjct: 231 RE-----GHTSVHT 239
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 93/189 (49%), Gaps = 34/189 (17%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
R +G+LL GPPG GKT LA+AVA + F S G VR LFETA+
Sbjct: 47 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 106
Query: 147 RAPAVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198
AP ++FIDE+DA G+ E E T +LL MDG D ++V+AA
Sbjct: 107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGF---EKDTAIVVMAA 160
Query: 199 TNHPWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSK 243
TN P LD AL R RF+++I+ I G L E +VD+A L+K
Sbjct: 161 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAK 215
Query: 244 QLIGYSGSD 252
+ G+ G+D
Sbjct: 216 RTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 34/186 (18%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP 149
+G+LL GPPG GKT LA+AVA + F S G VR LFETA+ AP
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 150 AVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201
++FIDE+DA G+ E E T +LL MDG D ++V+AATN
Sbjct: 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGF---EKDTAIVVMAATNR 187
Query: 202 PWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSKQLI 246
P LD AL R RF+++I+ I G L E +VD+A L+K+
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAKRTP 242
Query: 247 GYSGSD 252
G+ G+D
Sbjct: 243 GFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 34/186 (18%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP 149
+G+LL GPPG GKT LA+AVA + F S G VR LFETA+ AP
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 124
Query: 150 AVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201
++FIDE+DA G+ E E T +LL MDG D ++V+AATN
Sbjct: 125 CIVFIDEIDAVGRKRGSGVGGGNDEREQT---LNQLLVEMDGF---EKDTAIVVMAATNR 178
Query: 202 PWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSKQLI 246
P LD AL R RF+++I+ I G L E +VD+A L+K+
Sbjct: 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAKRTP 233
Query: 247 GYSGSD 252
G+ G+D
Sbjct: 234 GFVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 34/186 (18%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP 149
+G+LL GPPG GKT LA+AVA + F S G VR LFETA+ AP
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 150 AVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201
++FIDE+DA G+ E E T +LL MDG D ++V+AATN
Sbjct: 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGF---EKDTAIVVMAATNR 187
Query: 202 PWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSKQLI 246
P LD AL R RF+++I+ I G L E +VD+A L+K+
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAKRTP 242
Query: 247 GYSGSD 252
G+ G+D
Sbjct: 243 GFVGAD 248
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY--GESEKLVRALFETARAR 147
+ IL+ GP G GKT +A+ +A + F V + T Y E + ++R L ++A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 148 APAV-----IFIDEVDAFC-----SGSREHEATRR-VRCELLSHMDG--VGTGSG---DK 191
AV +FIDE+D C SG+ + +R V+ +LL ++G V T G
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGA---DVSREGVQRDLLPLVEGSTVSTKHGMVKTD 167
Query: 192 GVLVLAA----TNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIG 247
+L +A+ P DL L+ R R+ + I +P+ + K L+
Sbjct: 168 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 227
Query: 248 YSGSDI 253
G +I
Sbjct: 228 TEGVNI 233
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 77 LMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTSKHYGESE 134
++ +L K R +LL GPPGTGKT LA A+A + GS F ++ S + S ++E
Sbjct: 51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
Query: 135 KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG 185
L E R RA + + + + E E T CE + M G G
Sbjct: 111 ----VLMENFR-RAIGLRIKETKEVY-----EGEVTELTPCETENPMGGYG 151
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-GES-EKLVRALFETA---- 144
ILL GP G+GKTL+A+ +A +SLT Y GE E ++ L + +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176
+ ++FIDE+D S TR V E
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-GES-EKLVRAL-----FETA 144
ILL GP G+GKTLLA+ +A F ++LT Y GE E +++ L ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176
+A+ +++ID++D S TR V E
Sbjct: 114 KAQR-GIVYIDQIDKISRKSDNPSITRDVSGE 144
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-GES-EKLVRAL-----FETA 144
ILL GP G+GKTLLA+ +A F ++LT Y GE E +++ L ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176
+A+ +++ID++D S TR V E
Sbjct: 114 KAQR-GIVYIDQIDKISRKSDNPSITRDVSGE 144
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 77 LMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115
++ +L K R +LL GPPGTGKT LA A+A + GS
Sbjct: 65 VIVELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGS 103
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119
GL+ VK+ E L + KL L IL L GPPG GKT LAK++A G F
Sbjct: 85 GLEKVKERILEYLAVQKLTKSLKGPIL------CLAGPPGVGKTSLAKSIAKSLGRKFVR 138
Query: 120 V 120
+
Sbjct: 139 I 139
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARAR 147
P +LLFGPPG GKT LA +A + G +TS E + A+ +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLEE 90
Query: 148 APAVIFIDEVDAFCSGSREH 167
++FIDE+ + EH
Sbjct: 91 G-DILFIDEIHRLSRQAEEH 109
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARAR 147
P +LLFGPPG GKT LA +A + G V K + L +L E
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSLEEG---- 91
Query: 148 APAVIFIDEVDAFCSGSREH 167
++FIDE+ + EH
Sbjct: 92 --DILFIDEIHRLSRQAEEH 109
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARAR 147
P +LLFGPPG GKT LA +A + G V K + L +L E
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSLEEG---- 91
Query: 148 APAVIFIDEVDAFCSGSREH 167
++FIDE+ + EH
Sbjct: 92 --DILFIDEIHRLSRQAEEH 109
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPA- 150
++L+GPPGTGKT LA+ +A + + S++TS K +R E AR A
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI--SAVTS-----GVKEIREAIERARQNRNAG 105
Query: 151 ---VIFIDEVDAF 160
++F+DEV F
Sbjct: 106 RRTILFVDEVHRF 118
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
ILL G PG GKT L K +AS+ G + NV
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 19 GKPRTGVPKVGPNRRAN-PELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKL 77
G TG G N AN P L +L +D+ T + +D LD V KE + ++
Sbjct: 143 GSNETGSSAAGTNSNANTPTLDSLA-RDL----TAIAKED--SLDPVIGRSKEIQRVIEV 195
Query: 78 MPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF-------NVLPSSLTSKHY 130
+ + R +L G PG GKT +A+ +A Q + V+ + +K+
Sbjct: 196 LSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR 249
Query: 131 GESEKLVRALFETARARAPAVIFID 155
GE E ++ + + R ++FID
Sbjct: 250 GEFEDRLKKVMDEIRQAGNIILFID 274
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
ILL G PG GKT L K +AS+ G + NV
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 41/181 (22%)
Query: 92 ILLFGPPGTGKTLLAKAVASQ-HGSTFFNVLPSSLTSKHYGESEKLVRAL---FETAR-- 145
+L +GPPGTGKT A+A + +G + N++ S G +VR F + R
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID--VVRNQIKDFASTRQI 106
Query: 146 -ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH--- 201
++ +I +DE DA + ++ A RRV + + + VLA H
Sbjct: 107 FSKGFKLIILDEADAMTNAAQ--NALRRV----------IERYTKNTRFCVLANYAHKLT 154
Query: 202 PWDLDEALKRRF--------EKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDI 253
P L + + RF E+RI+ + L +++ PN + K LI S D+
Sbjct: 155 PALLSQCTRFRFQPLPQEAIERRIANV----LVHEKLKLSPNAE-----KALIELSNGDM 205
Query: 254 R 254
R
Sbjct: 206 R 206
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 19 GKPRTGVPKVGPNRRAN-PELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKL 77
G TG G N AN P L +L +D+ T + +D LD V KE + ++
Sbjct: 143 GSNETGSSAAGTNSNANTPTLDSLA-RDL----TAIAKED--SLDPVIGRSKEIQRVIEV 195
Query: 78 MPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF-------NVLPSSLTSKHY 130
+ + R +L G PG GKT +A+ +A Q + V+ + +K+
Sbjct: 196 LSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR 249
Query: 131 GESEKLVRALFETARARAPAVIFID 155
GE E ++ + + R ++FID
Sbjct: 250 GEFEDRLKKVMDEIRQAGNIILFID 274
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTSKHYGESEKLVRALFET 143
RP + GP G GKT LA+A+A + + S KH +L E
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT----EK 574
Query: 144 ARARAPAVIFIDEVD 158
R + +V+ +D ++
Sbjct: 575 VRRKPYSVVLLDAIE 589
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 80 QLFKGILRPWRGILLFGPPGTGKTLL 105
++F +L RGI+L GPPG+GKT++
Sbjct: 1039 KIFYDLLNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 80 QLFKGILRPWRGILLFGPPGTGKTLL 105
++F +L RGI+L GPPG+GKT++
Sbjct: 1258 KIFYDLLNSKRGIILCGPPGSGKTMI 1283
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 30/98 (30%)
Query: 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS--------------------- 127
+R +L+GPPG GKT A VA + G S + S
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYF 136
Query: 128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR 165
KH E++ L F VI +DEVD G R
Sbjct: 137 KHNEEAQNLNGKHF---------VIIMDEVDGMSGGDR 165
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY--GESEKLVRALFETA 144
+ IL+ GP G GKT +A+ +A + F V + T Y E + ++R L ++A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARA 148
+ I ++G GTGKT L +A ++ + V+ SS E L + R
Sbjct: 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNXY 96
Query: 149 PAV--IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206
+V + +D+V F SG R + E + + ++LA+ HP LD
Sbjct: 97 KSVDLLLLDDVQ-FLSGK------ERTQIEFFHIFNTLYLLEKQ---IILASDRHPQKLD 146
Query: 207 ---EALKRRFEKRI---------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGY---SGS 251
+ L RFE I + +II E K+ N++ L K++I Y +
Sbjct: 147 GVSDRLVSRFEGGILVEIELDNKTRFKII----KEKLKEFNLE---LRKEVIDYLLENTK 199
Query: 252 DIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNI 288
++R++ +I LI + GF G+ K R+ +
Sbjct: 200 NVREIEGKIKLIKLK------GFEGLERKERKERDKL 230
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGESEKLVRALFET--AR 145
R +L+ G PGTGKT +A +A G + F + S + S ++E L +A + R
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 146 ARAPAV--IFIDEVDAFCS 162
+A AV + + E+D S
Sbjct: 131 IKAGAVHTVSLHEIDVINS 149
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY--GESEKLVRALFETA 144
+ IL+ GP G GKT +A+ +A + F V + T Y E + ++R L + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY--GESEKLVRALFETA 144
+ IL+ GP G GKT +A+ +A + F V + T Y E + ++R L + A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY--GESEKLVRALFETA 144
+ IL+ GP G GKT +A+ +A + F V + T Y E + ++R L + A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-PSSLTSKHYGESEKLVRALFETARA 146
P +LL GPP +GKT LA +A + F + P + + ++ +F+ A
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 122
Query: 147 RAPAVIFIDEVD 158
+ + +D+++
Sbjct: 123 SQLSCVVVDDIE 134
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-PSSLTSKHYGESEKLVRALFETARA 146
P +LL GPP +GKT LA +A + F + P + + ++ +F+ A
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 121
Query: 147 RAPAVIFIDEVD 158
+ + +D+++
Sbjct: 122 SQLSCVVVDDIE 133
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARA 148
+ I ++G GTGKT L +A ++ + V+ SS E L + R
Sbjct: 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY 96
Query: 149 PAV--IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206
+V + +D+V F SG R + E + + ++LA+ HP LD
Sbjct: 97 KSVDLLLLDDVQ-FLSGK------ERTQIEFFHIFNTLYLLEKQ---IILASDRHPQKLD 146
Query: 207 ---EALKRRFEKRI---------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGY---SGS 251
+ L RFE I + +II E K+ N++ L K++I Y +
Sbjct: 147 GVSDRLVSRFEGGILVEIELDNKTRFKII----KEKLKEFNLE---LRKEVIDYLLENTK 199
Query: 252 DIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNI 288
++R++ +I LI + GF G+ K R+ +
Sbjct: 200 NVREIEGKIKLIKLK------GFEGLERKERKERDKL 230
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 50 DTGVGW------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKT 103
D+GV + D+ G +NVK+ L K+ ++ +L L GPPG GKT
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVL-------LAGPPGLGKT 65
Query: 104 LLAKAVASQ 112
LA +AS+
Sbjct: 66 TLAHIIASE 74
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 50 DTGVGW------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKT 103
D+GV + D+ G +NVK+ L K+ ++ +L L GPPG GKT
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVL-------LAGPPGLGKT 65
Query: 104 LLAKAVASQ 112
LA +AS+
Sbjct: 66 TLAHIIASE 74
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 50 DTGVGW------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKT 103
D+GV + D+ G +NVK+ L K+ ++ +L L GPPG GKT
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVL-------LAGPPGLGKT 65
Query: 104 LLAKAVASQ 112
LA +AS+
Sbjct: 66 TLAHIIASE 74
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARA 148
+ I ++G GTGKT L +A ++ + V+ SS E L + R
Sbjct: 36 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY 95
Query: 149 PAV--IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206
+V + +D+V F SG R + E + + ++LA+ HP LD
Sbjct: 96 KSVDLLLLDDVQ-FLSGK------ERTQIEFFHIFNTLYLLEKQ---IILASDRHPQKLD 145
Query: 207 ---EALKRRFEKRI---------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGY---SGS 251
+ L RFE I + +II E K+ N++ L K++I Y +
Sbjct: 146 GVSDRLVSRFEGGILVEIELDNKTRFKII----KEKLKEFNLE---LRKEVIDYLLENTK 198
Query: 252 DIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNI 288
++R++ +I LI + GF G+ K R+ +
Sbjct: 199 NVREIEGKIKLIKLK------GFEGLERKERKERDKL 229
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 50 DTGVGW------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKT 103
D+GV + D+ G +NVK+ L K+ ++ +L L GPPG GKT
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVL-------LAGPPGLGKT 65
Query: 104 LLAKAVASQ 112
LA +AS+
Sbjct: 66 TLAHIIASE 74
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 50 DTGVGW------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKT 103
D+GV + D+ G +NVK+ L K+ ++ +L L GPPG GKT
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVL-------LAGPPGLGKT 65
Query: 104 LLAKAVASQ 112
LA +AS+
Sbjct: 66 TLAHIIASE 74
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY--GESEKLVRALFETA 144
+ IL GP G GKT +A+ +A + F V + T Y E + ++R L ++A
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 93 LLFGPPGTGKTLLAKAVA----------SQHGSTFFNVLPSSLT--SKHYGESEKLVRAL 140
+L G PG GKT + + +A S G ++ SSL +K+ G+ E+ ++++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 141 F-ETARARAPAVIFIDEV 157
E A V+FIDE+
Sbjct: 107 LKEVQDAEGQVVMFIDEI 124
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 50 DTGVGW------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKT 103
D+GV + D+ G +NVK+ L K+ ++ +L L GPPG G+T
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVL-------LAGPPGLGRT 65
Query: 104 LLAKAVASQ 112
LA +AS+
Sbjct: 66 TLAHIIASE 74
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVR-------- 138
RP L GP G GKT LAK +A+ T ++ +T Y E + R
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT--EYMEKHAVSRLIGAPPGY 643
Query: 139 -------ALFETARARAPAVIFIDEVD 158
L E R R +VI DE++
Sbjct: 644 VGYEEGGQLTEAVRRRPYSVILFDEIE 670
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 93 LLFGPPGTGKTLLAKAVASQ----------HGSTFFNVLPSSLT--SKHYGESEKLVRAL 140
+L G PG GKT + + +A + G ++ SL +K+ GE E+ ++A+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 141 F-ETARARAPAVIFIDEVDAFCSGSR 165
E +++ ++FIDE+ +
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGK 280
>pdb|2FKN|A Chain A, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|B Chain B, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|C Chain C, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|D Chain D, Crystal Structure Of Urocanase From Bacillus Subtilis
Length = 552
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 20/153 (13%)
Query: 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGP 97
+ A +K + D G +A + ++ F +P + LF P+R L G
Sbjct: 306 MLAFQQKGSIVFDYGNNIRQVAKDEGLENAFDFPGFVPAYIRPLFCEGKGPFRWAALSGD 365
Query: 98 PG--------------TGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKL---VRAL 140
P T K L +Q TF LPS + YGE +K+ + L
Sbjct: 366 PADIYRTDALLKELFPTNKALHRWIDMAQEKVTF-QGLPSRICWLGYGERKKMGLAINEL 424
Query: 141 FETARARAPAVIFIDEVD--AFCSGSREHEATR 171
T +AP VI D +D + S +RE EA +
Sbjct: 425 VRTGELKAPVVIGRDHLDCGSVASPNRETEAMK 457
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 74 LPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGE 132
+P F+G + R I++ GP GTGK+ L K + +++ +F +PS+ + GE
Sbjct: 4 IPTTENLYFQGSMS--RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGE 60
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 93 LLFGPPGTGKTLLAKAVASQ----------HGSTFFNVLPSSLT--SKHYGESEKLVRAL 140
+L G PG GKT + + +A + G ++ SL +K+ GE E+ ++A+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 141 F-ETARARAPAVIFIDEVDAFCSGSR 165
E +++ ++FIDE+ +
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGK 143
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 90 RGILLFGPPGTGKTLLAKAVA 110
R +LL G PGTGK++L +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGESEKLVRAL 140
R +L+ G PGTGKT +A A G + F + S + S ++E L +A
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAF 138
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 93 LLFGPPGTGKTLLAKAVA----------SQHGSTFFNVLPSSLT--SKHYGESEKLVRAL 140
LL G G GKT +A+ +A T +++ SL +K+ G+ EK +AL
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 141 FETARARAPAVIFIDEV 157
+ +++FIDE+
Sbjct: 271 LKQLEQDTNSILFIDEI 287
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 64 VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123
V I K L LP + L GI +G G GK+ + V + G +
Sbjct: 20 VVHITKNFLKLPNIKVPLILGI---------WGGKGQGKSFQCELVFRKMGINPIMMSAG 70
Query: 124 SLTSKHYGESEKLVRALF----ETARARAPAVIFIDEVDA 159
L S + GE KL+R + E R +FI+++DA
Sbjct: 71 ELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119
+ + GP GTGK+ +AK +A Q G+++ +
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGASYLD 34
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 91 GILLFGPPGTGKTLLAKAVASQ 112
IL+ G PGTGKT +A+ +A++
Sbjct: 12 NILITGTPGTGKTSMAEMIAAE 33
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 95 FGPPGTGKTLLAKAVASQHG 114
FGP GTGKT KA+ SQ G
Sbjct: 610 FGPAGTGKTETVKALGSQLG 629
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 95 FGPPGTGKTLLAKAVASQHG 114
FGP GTGKT KA+ SQ G
Sbjct: 610 FGPAGTGKTETVKALGSQLG 629
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTF-FNV 120
R ++L GP G GK+ L K + +H S F F+V
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSV 36
>pdb|2XHL|B Chain B, Structure Of A Functional Derivative Of Clostridium
Botulinum Neurotoxin Type B
Length = 433
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 318 KEKCRKSVDGALIRKYKRWNELYG 341
K K K++D AL ++ ++W+++YG
Sbjct: 237 KNKIIKTIDNALTKRNEKWSDMYG 260
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN 119
R + L G G+GKT + K +A G TFF+
Sbjct: 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 318 KEKCRKSVDGALIRKYKRWNELYG 341
K K K++D AL ++ ++W+++YG
Sbjct: 674 KNKIIKTIDNALTKRNEKWSDMYG 697
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVAS 111
RP L GP G GKT LAK +A+
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAA 66
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVAS 111
RP L GP G GKT LAK +A+
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLAA 69
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 29 GPNR-RANPELTA---LVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG 84
GPN+ R +L A L ++ V+ D++ D+ + K+TL L LF
Sbjct: 6 GPNKKRKISKLAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLF-- 63
Query: 85 ILRPWRGILLFGPPGTGKT 103
+GPPGTGKT
Sbjct: 64 ----------YGPPGTGKT 72
>pdb|3ZUQ|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type B-Derivative, Lc-B-Gs-Hn-B
Length = 906
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 318 KEKCRKSVDGALIRKYKRWNELYG 341
K K K++D AL ++ ++W+++YG
Sbjct: 710 KNKIIKTIDNALTKRNEKWSDMYG 733
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 21/117 (17%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ-HG 114
D++ G D V Q K + K +P L L GPPGTGKT A A+A G
Sbjct: 17 DEVVGQDEVIQRLK-GYVERKNIPHL-----------LFSGPPGTGKTATAIALARDLFG 64
Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAP------AVIFIDEVDAFCSGSR 165
+ + S G +VR + AP +IF+DE DA + ++
Sbjct: 65 ENWRDNFIEMNASDERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 92 ILLFGPPGTGKTLLAKAVASQ-HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP- 149
+L GPPGTGKT A A+A G + + S G +VR + AP
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID--VVRHKIKEFARTAPI 98
Query: 150 -----AVIFIDEVDAFCSGSR 165
+IF+DE DA + ++
Sbjct: 99 GGAPFKIIFLDEADALTADAQ 119
>pdb|1YWQ|A Chain A, Crystal Structure Of A Nitroreductase Family Protein From
Bacillus Cereus Atcc 14579
Length = 200
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 113 HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIF---IDEVDAFCSG 163
H T FN+ + GE EK + ET RAR PA F ++ + F +G
Sbjct: 41 HAPTSFNMQSGRMVVLMDGEHEKFWDIVKETLRARVPAENFEATVERLKGFHAG 94
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 81 LFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-FNVLPSSLTSKHYGESEKLVRA 139
+ L+ G+ L P G+GKT++A A Q+ S VL T+ + K +R+
Sbjct: 14 FLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS 73
Query: 140 LFETARARA 148
L T + RA
Sbjct: 74 LSSTMKIRA 82
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 93 LLFGPPGTGKTLLAKAVASQ----------HGSTFFNVLPSSLT--SKHYGE-SEKLVRA 139
+L G PG GKT + + +A + G + +L +K+ GE E+L
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 140 LFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGD---KGVLVL 196
L + A+ ++FIDE+ + A +M G+ G L
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMD------AGNMLKPALARGELHCVGATTL 160
Query: 197 AATNHPWDLDEALKRRFEK 215
+ D AL+RRF+K
Sbjct: 161 DEYRQYIEKDAALERRFQK 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,668,812
Number of Sequences: 62578
Number of extensions: 455616
Number of successful extensions: 1260
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 131
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)