Query psy7809
Match_columns 343
No_of_seqs 269 out of 3109
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:21:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738|consensus 100.0 8E-55 1.7E-59 389.8 26.7 294 30-343 186-491 (491)
2 KOG0739|consensus 100.0 7.2E-52 1.6E-56 359.3 20.7 300 35-343 112-438 (439)
3 KOG0730|consensus 100.0 8.8E-50 1.9E-54 378.9 22.6 260 42-339 420-692 (693)
4 COG1222 RPT1 ATP-dependent 26S 100.0 9.4E-49 2E-53 348.7 21.5 238 46-323 141-394 (406)
5 KOG0733|consensus 100.0 2.9E-48 6.3E-53 364.1 24.7 276 42-341 497-789 (802)
6 KOG0736|consensus 100.0 1.4E-47 3.1E-52 367.4 24.6 274 47-341 663-952 (953)
7 KOG0733|consensus 100.0 7.5E-45 1.6E-49 341.2 26.9 290 50-340 184-523 (802)
8 KOG0737|consensus 100.0 5.2E-43 1.1E-47 313.6 21.4 286 44-342 80-382 (386)
9 TIGR01243 CDC48 AAA family ATP 100.0 4.6E-40 1E-44 334.8 27.5 276 45-342 442-731 (733)
10 KOG0740|consensus 100.0 1.6E-40 3.6E-45 307.7 16.4 287 32-343 129-426 (428)
11 COG1223 Predicted ATPase (AAA+ 100.0 2.1E-39 4.6E-44 277.0 17.1 234 50-326 115-360 (368)
12 KOG0734|consensus 100.0 2.9E-39 6.3E-44 299.4 18.4 229 52-321 300-541 (752)
13 KOG0728|consensus 100.0 3.1E-38 6.7E-43 268.7 18.5 251 46-336 137-403 (404)
14 KOG0727|consensus 100.0 2.8E-38 6.1E-43 269.2 17.6 237 48-324 147-399 (408)
15 KOG0652|consensus 100.0 8.9E-38 1.9E-42 267.3 16.3 245 38-322 153-413 (424)
16 PTZ00454 26S protease regulato 100.0 2.5E-37 5.5E-42 291.1 20.4 238 47-324 136-389 (398)
17 KOG0726|consensus 100.0 7.8E-38 1.7E-42 271.3 15.5 238 45-322 174-427 (440)
18 CHL00195 ycf46 Ycf46; Provisio 100.0 9.2E-37 2E-41 293.1 24.1 245 51-340 223-484 (489)
19 COG0464 SpoVK ATPases of the A 100.0 7.3E-37 1.6E-41 299.3 23.7 247 45-336 231-492 (494)
20 KOG0735|consensus 100.0 1.4E-36 3.1E-41 289.5 22.8 222 49-273 660-894 (952)
21 KOG0729|consensus 100.0 2.3E-36 5E-41 259.4 17.8 236 47-322 168-419 (435)
22 PRK03992 proteasome-activating 100.0 7.1E-36 1.5E-40 282.5 20.9 244 44-327 119-378 (389)
23 KOG0731|consensus 100.0 5.3E-36 1.1E-40 293.0 20.2 234 48-322 303-554 (774)
24 PTZ00361 26 proteosome regulat 100.0 3.2E-35 7E-40 278.5 19.6 237 46-322 173-425 (438)
25 TIGR01241 FtsH_fam ATP-depende 100.0 6.7E-34 1.4E-38 277.8 20.8 236 47-323 46-297 (495)
26 COG0465 HflB ATP-dependent Zn 100.0 4E-34 8.6E-39 275.5 17.2 232 50-322 144-391 (596)
27 TIGR01242 26Sp45 26S proteasom 100.0 5.8E-33 1.3E-37 261.6 20.5 235 47-321 113-363 (364)
28 KOG0741|consensus 100.0 2E-33 4.4E-38 260.5 15.4 260 50-334 213-505 (744)
29 KOG0651|consensus 100.0 3.5E-33 7.6E-38 244.3 13.6 239 47-322 123-374 (388)
30 CHL00176 ftsH cell division pr 100.0 6.4E-32 1.4E-36 267.3 20.9 230 51-321 178-423 (638)
31 KOG0730|consensus 100.0 5.8E-32 1.3E-36 257.7 19.3 214 51-268 180-405 (693)
32 TIGR03689 pup_AAA proteasome A 100.0 5.3E-31 1.2E-35 253.0 22.7 244 42-321 168-478 (512)
33 TIGR01243 CDC48 AAA family ATP 100.0 3.5E-30 7.5E-35 262.5 24.0 255 50-325 172-439 (733)
34 PRK10733 hflB ATP-dependent me 100.0 4.6E-30 1E-34 256.6 20.7 234 50-324 146-395 (644)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.5E-30 7.5E-35 268.4 18.2 197 85-322 1626-1878(2281)
36 KOG0732|consensus 100.0 9.2E-29 2E-33 248.2 17.4 254 48-325 257-529 (1080)
37 PLN00020 ribulose bisphosphate 100.0 4E-28 8.6E-33 220.2 18.2 162 85-247 144-330 (413)
38 KOG0736|consensus 99.9 6.5E-22 1.4E-26 191.4 21.0 233 88-338 430-682 (953)
39 KOG0735|consensus 99.9 3.8E-22 8.3E-27 191.4 16.4 224 56-324 408-651 (952)
40 TIGR02881 spore_V_K stage V sp 99.9 2.1E-21 4.5E-26 174.9 15.3 208 54-270 4-244 (261)
41 CHL00181 cbbX CbbX; Provisiona 99.9 6.3E-21 1.4E-25 173.1 16.7 206 56-270 23-260 (287)
42 PF00004 AAA: ATPase family as 99.9 2.5E-21 5.4E-26 155.8 11.2 125 92-218 1-129 (132)
43 TIGR02880 cbbX_cfxQ probable R 99.9 2.4E-20 5.2E-25 169.4 16.9 205 57-270 23-259 (284)
44 KOG0742|consensus 99.8 5.2E-20 1.1E-24 167.1 14.3 201 48-258 347-586 (630)
45 PF05496 RuvB_N: Holliday junc 99.8 1.8E-19 4E-24 154.0 15.2 188 48-260 16-225 (233)
46 KOG0744|consensus 99.8 1E-19 2.2E-24 160.8 9.9 200 55-257 141-389 (423)
47 KOG0743|consensus 99.8 1.1E-18 2.4E-23 161.4 14.8 198 47-255 192-411 (457)
48 TIGR02639 ClpA ATP-dependent C 99.8 2.4E-18 5.2E-23 175.4 17.4 250 38-340 164-452 (731)
49 PRK07003 DNA polymerase III su 99.8 1E-17 2.2E-22 165.2 19.6 186 46-263 6-227 (830)
50 PRK14956 DNA polymerase III su 99.8 4.2E-18 9.2E-23 162.0 16.3 186 45-262 7-228 (484)
51 COG2255 RuvB Holliday junction 99.8 1.6E-17 3.4E-22 145.0 18.4 230 49-340 19-273 (332)
52 PRK12323 DNA polymerase III su 99.8 3.3E-18 7.3E-23 166.6 15.8 186 45-262 5-231 (700)
53 PRK00080 ruvB Holliday junctio 99.8 2.7E-17 5.8E-22 153.1 20.6 194 48-266 17-232 (328)
54 KOG2004|consensus 99.8 2.1E-17 4.6E-22 159.3 17.5 198 18-227 363-596 (906)
55 TIGR00635 ruvB Holliday juncti 99.8 3.6E-17 7.7E-22 150.8 17.1 187 54-265 2-210 (305)
56 PRK14960 DNA polymerase III su 99.8 9.5E-17 2E-21 156.9 20.3 185 46-262 5-225 (702)
57 PRK14949 DNA polymerase III su 99.8 1.1E-16 2.5E-21 160.6 21.3 192 45-262 5-226 (944)
58 PRK14958 DNA polymerase III su 99.7 2E-17 4.2E-22 161.1 15.2 187 45-263 5-227 (509)
59 TIGR00763 lon ATP-dependent pr 99.7 4.1E-17 8.9E-22 167.3 17.8 233 24-269 278-559 (775)
60 PRK07994 DNA polymerase III su 99.7 2.4E-16 5.1E-21 155.8 21.4 186 46-263 6-227 (647)
61 PRK14962 DNA polymerase III su 99.7 4.5E-17 9.7E-22 157.1 15.9 182 46-259 4-221 (472)
62 COG2256 MGS1 ATPase related to 99.7 9.1E-17 2E-21 146.6 16.2 167 47-248 15-205 (436)
63 KOG0989|consensus 99.7 3.4E-16 7.4E-21 138.0 18.5 176 43-247 23-222 (346)
64 PRK06645 DNA polymerase III su 99.7 1.1E-16 2.3E-21 155.1 16.3 194 45-264 10-237 (507)
65 PRK14961 DNA polymerase III su 99.7 1.2E-16 2.6E-21 150.4 15.4 184 46-261 6-225 (363)
66 PRK14964 DNA polymerase III su 99.7 2.2E-16 4.7E-21 151.8 16.4 185 47-263 4-224 (491)
67 PRK14951 DNA polymerase III su 99.7 2.5E-16 5.4E-21 155.3 16.5 186 46-263 6-232 (618)
68 PRK08691 DNA polymerase III su 99.7 3.4E-16 7.5E-21 154.2 17.1 187 45-263 5-227 (709)
69 TIGR02902 spore_lonB ATP-depen 99.7 2.1E-16 4.5E-21 155.3 15.5 201 43-266 52-314 (531)
70 COG0466 Lon ATP-dependent Lon 99.7 1.8E-16 3.9E-21 153.6 14.6 184 20-215 277-489 (782)
71 PRK11034 clpA ATP-dependent Cl 99.7 6.9E-16 1.5E-20 156.0 17.0 206 38-263 168-408 (758)
72 PRK14969 DNA polymerase III su 99.7 7.7E-16 1.7E-20 150.9 16.1 186 46-263 6-227 (527)
73 COG2812 DnaX DNA polymerase II 99.7 2.4E-16 5.2E-21 151.1 11.3 194 45-264 5-228 (515)
74 PRK07764 DNA polymerase III su 99.7 1E-15 2.2E-20 155.9 16.3 184 46-261 5-226 (824)
75 PRK13342 recombination factor 99.7 2E-15 4.3E-20 144.7 17.5 179 47-261 3-201 (413)
76 PLN03025 replication factor C 99.7 2.8E-15 6.2E-20 138.9 18.0 181 45-258 2-202 (319)
77 PRK14952 DNA polymerase III su 99.7 1.7E-15 3.7E-20 148.9 17.1 185 47-263 4-226 (584)
78 PRK07940 DNA polymerase III su 99.7 1.7E-15 3.7E-20 142.9 16.1 180 54-255 3-213 (394)
79 PRK14957 DNA polymerase III su 99.7 1.9E-15 4.1E-20 147.3 16.8 186 46-263 6-227 (546)
80 COG0464 SpoVK ATPases of the A 99.7 7.2E-15 1.6E-19 144.2 20.8 211 77-323 5-228 (494)
81 PRK07133 DNA polymerase III su 99.7 7.8E-15 1.7E-19 146.0 20.7 191 45-261 7-224 (725)
82 PRK05896 DNA polymerase III su 99.7 2.8E-15 6E-20 146.4 16.8 185 45-261 5-225 (605)
83 PRK04195 replication factor C 99.7 2.4E-15 5.1E-20 146.8 15.9 186 45-260 3-203 (482)
84 PRK14959 DNA polymerase III su 99.7 3E-15 6.5E-20 146.9 16.4 183 45-259 5-223 (624)
85 PRK14963 DNA polymerase III su 99.7 3.5E-15 7.6E-20 145.1 16.6 184 46-261 4-222 (504)
86 PRK05563 DNA polymerase III su 99.6 3.3E-15 7.1E-20 147.5 16.4 185 46-262 6-226 (559)
87 PRK14965 DNA polymerase III su 99.6 3E-15 6.6E-20 148.3 16.1 186 46-263 6-227 (576)
88 TIGR00390 hslU ATP-dependent p 99.6 2.4E-15 5.2E-20 140.2 14.1 88 57-144 13-104 (441)
89 PRK10787 DNA-binding ATP-depen 99.6 6.2E-15 1.4E-19 150.2 17.8 234 23-269 279-560 (784)
90 PRK00149 dnaA chromosomal repl 99.6 7.7E-15 1.7E-19 142.2 17.7 194 50-265 116-331 (450)
91 TIGR03345 VI_ClpV1 type VI sec 99.6 5.5E-15 1.2E-19 152.1 17.5 207 38-264 169-410 (852)
92 PRK08451 DNA polymerase III su 99.6 8.3E-15 1.8E-19 142.2 16.2 187 46-264 4-226 (535)
93 PRK14953 DNA polymerase III su 99.6 7.7E-15 1.7E-19 142.2 15.7 192 45-262 5-226 (486)
94 PRK10865 protein disaggregatio 99.6 4.2E-15 9.2E-20 153.4 14.7 173 38-230 160-357 (857)
95 PHA02544 44 clamp loader, smal 99.6 4.2E-15 9.1E-20 137.7 12.9 144 46-216 11-155 (316)
96 TIGR00362 DnaA chromosomal rep 99.6 2.3E-14 4.9E-19 137.2 18.3 193 50-265 104-319 (405)
97 TIGR02397 dnaX_nterm DNA polym 99.6 8.8E-15 1.9E-19 137.7 14.9 186 45-262 3-224 (355)
98 PRK09111 DNA polymerase III su 99.6 1.6E-14 3.4E-19 142.9 16.6 193 44-262 12-239 (598)
99 PRK06647 DNA polymerase III su 99.6 1.6E-14 3.5E-19 142.1 16.5 185 46-262 6-226 (563)
100 TIGR02928 orc1/cdc6 family rep 99.6 4.4E-14 9.6E-19 133.5 18.3 195 56-267 15-257 (365)
101 CHL00095 clpC Clp protease ATP 99.6 8E-15 1.7E-19 151.4 14.2 206 38-263 161-400 (821)
102 PRK05201 hslU ATP-dependent pr 99.6 7.1E-15 1.5E-19 137.1 12.0 88 57-144 16-107 (443)
103 PRK14948 DNA polymerase III su 99.6 1E-13 2.3E-18 137.9 20.9 189 45-259 5-225 (620)
104 PRK12402 replication factor C 99.6 3.8E-14 8.2E-19 132.4 16.9 181 46-253 5-223 (337)
105 TIGR03346 chaperone_ClpB ATP-d 99.6 2.8E-14 6.2E-19 147.7 17.4 206 38-263 155-395 (852)
106 KOG2028|consensus 99.6 1.7E-14 3.7E-19 129.9 13.2 174 45-253 127-334 (554)
107 PRK14955 DNA polymerase III su 99.6 4.1E-14 8.8E-19 134.8 16.0 192 46-263 6-235 (397)
108 PRK06305 DNA polymerase III su 99.6 6E-14 1.3E-18 135.2 17.3 184 46-261 7-227 (451)
109 PRK14088 dnaA chromosomal repl 99.6 5.5E-14 1.2E-18 135.3 16.8 193 49-264 98-313 (440)
110 PRK14086 dnaA chromosomal repl 99.6 8.6E-14 1.9E-18 136.1 18.2 192 51-265 283-497 (617)
111 PRK14954 DNA polymerase III su 99.6 2.2E-13 4.7E-18 135.0 21.2 191 46-263 6-235 (620)
112 PRK13341 recombination factor 99.6 5.6E-14 1.2E-18 141.6 17.0 181 45-261 17-222 (725)
113 PRK14970 DNA polymerase III su 99.6 5.5E-14 1.2E-18 132.9 16.0 189 46-261 7-214 (367)
114 PRK00411 cdc6 cell division co 99.6 1.9E-13 4.2E-18 130.4 19.6 197 54-267 28-265 (394)
115 PRK00440 rfc replication facto 99.6 1.6E-13 3.4E-18 127.2 17.0 184 45-261 6-208 (319)
116 PRK05342 clpX ATP-dependent pr 99.5 2E-13 4.2E-18 129.6 17.1 127 57-183 72-213 (412)
117 PRK06893 DNA replication initi 99.5 2.7E-13 5.8E-18 119.7 16.4 182 49-260 9-207 (229)
118 PTZ00112 origin recognition co 99.5 1.5E-13 3.3E-18 136.8 16.1 183 56-257 755-979 (1164)
119 PRK14950 DNA polymerase III su 99.5 1.4E-13 3.1E-18 137.0 16.1 188 46-259 6-224 (585)
120 PRK12422 chromosomal replicati 99.5 4.4E-13 9.6E-18 128.8 18.6 194 50-261 105-318 (445)
121 PRK08084 DNA replication initi 99.5 7.6E-13 1.7E-17 117.2 17.8 178 50-260 16-213 (235)
122 PRK14971 DNA polymerase III su 99.5 3.8E-13 8.2E-18 133.9 17.3 185 47-263 8-229 (614)
123 PRK14087 dnaA chromosomal repl 99.5 7.2E-13 1.6E-17 127.7 17.8 165 89-266 141-329 (450)
124 PF05673 DUF815: Protein of un 99.5 8.6E-13 1.9E-17 114.7 16.3 140 48-213 19-162 (249)
125 PRK08903 DnaA regulatory inact 99.5 7.5E-13 1.6E-17 116.8 15.8 177 48-262 10-205 (227)
126 TIGR00382 clpX endopeptidase C 99.5 7.3E-13 1.6E-17 125.2 16.2 145 57-201 78-247 (413)
127 PRK08727 hypothetical protein; 99.5 2.7E-12 5.8E-17 113.6 18.8 178 50-261 13-209 (233)
128 TIGR02903 spore_lon_C ATP-depe 99.5 1.2E-12 2.7E-17 130.6 18.6 227 44-322 142-431 (615)
129 TIGR03420 DnaA_homol_Hda DnaA 99.5 5.2E-13 1.1E-17 117.6 14.2 182 52-266 11-211 (226)
130 PF00308 Bac_DnaA: Bacterial d 99.5 6.3E-13 1.4E-17 116.4 14.3 192 50-264 2-216 (219)
131 PRK05564 DNA polymerase III su 99.5 2E-12 4.4E-17 119.6 17.1 166 54-248 2-183 (313)
132 PRK07471 DNA polymerase III su 99.5 4.2E-12 9.1E-17 119.0 19.3 183 50-258 13-240 (365)
133 cd00009 AAA The AAA+ (ATPases 99.4 1.6E-12 3.5E-17 105.5 12.8 137 60-217 2-147 (151)
134 PRK05642 DNA replication initi 99.4 5.7E-12 1.2E-16 111.6 17.1 152 89-261 45-213 (234)
135 COG1474 CDC6 Cdc6-related prot 99.4 2.5E-12 5.5E-17 120.4 14.9 193 57-269 18-250 (366)
136 PRK11034 clpA ATP-dependent Cl 99.4 2.7E-12 5.8E-17 130.2 16.1 201 57-269 459-720 (758)
137 COG0593 DnaA ATPase involved i 99.4 7.3E-12 1.6E-16 117.2 17.8 195 48-265 79-295 (408)
138 PRK06620 hypothetical protein; 99.4 9.8E-12 2.1E-16 108.4 17.4 169 48-260 8-193 (214)
139 KOG0991|consensus 99.4 1.5E-12 3.3E-17 110.8 10.8 141 44-213 15-164 (333)
140 PRK09112 DNA polymerase III su 99.4 1.2E-11 2.6E-16 115.3 17.2 184 50-261 17-245 (351)
141 COG2607 Predicted ATPase (AAA+ 99.4 6.1E-12 1.3E-16 107.7 13.5 140 47-212 51-194 (287)
142 TIGR02639 ClpA ATP-dependent C 99.4 8E-12 1.7E-16 127.8 16.2 200 56-269 454-716 (731)
143 PRK07399 DNA polymerase III su 99.4 7E-12 1.5E-16 115.3 13.8 179 54-259 2-224 (314)
144 PRK13407 bchI magnesium chelat 99.3 1.1E-11 2.3E-16 114.6 11.8 155 51-226 3-215 (334)
145 PRK09087 hypothetical protein; 99.3 4.1E-11 8.9E-16 105.3 14.6 142 90-261 45-200 (226)
146 PRK05707 DNA polymerase III su 99.3 4.1E-11 9E-16 110.8 15.2 148 87-252 20-199 (328)
147 PF07728 AAA_5: AAA domain (dy 99.3 7.7E-12 1.7E-16 101.6 9.1 113 91-213 1-139 (139)
148 CHL00081 chlI Mg-protoporyphyr 99.3 5E-11 1.1E-15 110.4 15.1 154 50-226 11-231 (350)
149 COG1224 TIP49 DNA helicase TIP 99.3 4.2E-10 9.1E-15 101.6 18.7 137 149-339 292-448 (450)
150 TIGR02442 Cob-chelat-sub cobal 99.3 4.3E-11 9.4E-16 120.3 13.0 142 54-218 2-196 (633)
151 COG0470 HolB ATPase involved i 99.3 2.7E-11 5.8E-16 112.5 10.6 135 57-217 2-164 (325)
152 TIGR03345 VI_ClpV1 type VI sec 99.3 1.5E-10 3.2E-15 119.7 16.8 200 56-269 566-835 (852)
153 TIGR02640 gas_vesic_GvpN gas v 99.3 2.4E-10 5.1E-15 103.0 16.0 118 88-215 20-179 (262)
154 PRK11331 5-methylcytosine-spec 99.3 6E-11 1.3E-15 112.2 12.6 139 55-215 174-352 (459)
155 PHA02244 ATPase-like protein 99.3 2E-10 4.4E-15 106.0 15.6 118 87-215 117-255 (383)
156 PRK08058 DNA polymerase III su 99.3 1.5E-10 3.2E-15 107.7 15.0 134 54-217 3-165 (329)
157 PF13177 DNA_pol3_delta2: DNA 99.3 5.4E-11 1.2E-15 99.2 10.8 128 60-215 1-155 (162)
158 TIGR02030 BchI-ChlI magnesium 99.2 2.2E-10 4.8E-15 106.1 15.2 149 54-225 2-217 (337)
159 PF07724 AAA_2: AAA domain (Cd 99.2 3.7E-11 8E-16 100.9 9.1 114 88-203 2-131 (171)
160 TIGR00678 holB DNA polymerase 99.2 1.6E-10 3.5E-15 98.9 13.2 140 87-247 12-183 (188)
161 TIGR03346 chaperone_ClpB ATP-d 99.2 2.8E-10 6.1E-15 118.2 16.8 201 56-270 565-831 (852)
162 PRK10865 protein disaggregatio 99.2 3.6E-10 7.7E-15 117.1 16.5 198 55-269 567-833 (857)
163 CHL00095 clpC Clp protease ATP 99.2 2.7E-10 5.9E-15 117.9 15.7 201 56-270 509-787 (821)
164 COG0542 clpA ATP-binding subun 99.2 1.5E-10 3.3E-15 115.7 13.1 163 37-218 151-330 (786)
165 COG1220 HslU ATP-dependent pro 99.2 3.6E-10 7.7E-15 101.4 13.8 65 57-121 16-82 (444)
166 KOG1969|consensus 99.2 3.8E-10 8.1E-15 110.2 15.1 206 45-266 260-517 (877)
167 TIGR00764 lon_rel lon-related 99.2 2.2E-10 4.8E-15 114.3 13.8 53 50-116 12-64 (608)
168 PRK06871 DNA polymerase III su 99.2 7.2E-10 1.6E-14 102.0 16.1 157 61-247 7-195 (325)
169 smart00382 AAA ATPases associa 99.2 1.3E-10 2.8E-15 93.4 9.6 74 89-162 2-92 (148)
170 TIGR01650 PD_CobS cobaltochela 99.2 4.6E-10 1E-14 102.5 13.9 120 88-217 63-215 (327)
171 PRK07993 DNA polymerase III su 99.2 1.2E-09 2.7E-14 101.3 16.6 144 87-248 22-197 (334)
172 KOG0990|consensus 99.1 1.4E-10 3E-15 103.4 8.7 142 44-214 29-183 (360)
173 COG0714 MoxR-like ATPases [Gen 99.1 1.5E-10 3.2E-15 107.8 9.5 138 57-217 25-184 (329)
174 TIGR00368 Mg chelatase-related 99.1 2.5E-10 5.4E-15 111.0 11.3 176 53-268 189-423 (499)
175 COG1219 ClpX ATP-dependent pro 99.1 5.6E-11 1.2E-15 105.7 6.1 95 90-184 98-203 (408)
176 PF07726 AAA_3: ATPase family 99.1 1.7E-11 3.7E-16 96.1 2.5 108 91-214 1-130 (131)
177 KOG0741|consensus 99.1 2.3E-10 4.9E-15 107.9 10.2 130 87-218 536-668 (744)
178 PF01078 Mg_chelatase: Magnesi 99.1 1.8E-11 3.9E-16 104.3 2.6 45 55-113 2-46 (206)
179 COG0542 clpA ATP-binding subun 99.1 1.1E-10 2.5E-15 116.5 8.4 200 56-269 491-759 (786)
180 PRK04132 replication factor C 99.1 3.7E-09 8E-14 107.8 18.9 150 90-260 565-735 (846)
181 smart00350 MCM minichromosome 99.1 9.8E-10 2.1E-14 108.0 13.5 150 56-218 203-382 (509)
182 PF05621 TniB: Bacterial TniB 99.1 2.4E-09 5.2E-14 96.2 14.3 201 52-269 33-274 (302)
183 PRK12377 putative replication 99.1 5E-10 1.1E-14 99.4 9.7 131 49-202 67-206 (248)
184 PRK08769 DNA polymerase III su 99.1 4.1E-09 8.8E-14 96.9 15.9 163 61-250 9-203 (319)
185 TIGR00602 rad24 checkpoint pro 99.1 1.1E-09 2.5E-14 108.7 13.1 112 44-162 72-209 (637)
186 TIGR03015 pepcterm_ATPase puta 99.0 6.1E-09 1.3E-13 94.1 15.1 184 89-322 43-267 (269)
187 PRK06964 DNA polymerase III su 99.0 1.3E-08 2.8E-13 94.4 17.3 147 87-252 19-221 (342)
188 PRK06090 DNA polymerase III su 99.0 9.2E-09 2E-13 94.5 15.7 162 61-255 8-200 (319)
189 PRK07952 DNA replication prote 99.0 1.6E-09 3.4E-14 96.0 9.9 131 49-202 65-205 (244)
190 COG3829 RocR Transcriptional r 99.0 5.9E-10 1.3E-14 106.2 7.4 145 49-217 238-405 (560)
191 PF00158 Sigma54_activat: Sigm 99.0 4.9E-09 1.1E-13 87.8 11.3 122 58-201 1-143 (168)
192 KOG1514|consensus 99.0 2.2E-08 4.9E-13 97.7 17.2 207 90-337 423-671 (767)
193 TIGR02031 BchD-ChlD magnesium 99.0 8.6E-09 1.9E-13 102.8 14.9 128 89-227 16-174 (589)
194 COG0606 Predicted ATPase with 99.0 1E-09 2.2E-14 103.3 7.5 47 53-113 176-222 (490)
195 PRK13531 regulatory ATPase Rav 99.0 1.4E-09 3.1E-14 103.8 8.3 139 57-218 21-176 (498)
196 COG1239 ChlI Mg-chelatase subu 99.0 2.2E-08 4.7E-13 93.1 15.5 155 53-229 14-234 (423)
197 COG2204 AtoC Response regulato 99.0 1.4E-09 3E-14 103.5 7.6 141 53-217 138-300 (464)
198 KOG0745|consensus 99.0 2.5E-09 5.3E-14 98.9 8.7 94 90-183 227-331 (564)
199 TIGR01817 nifA Nif-specific re 98.9 1.9E-08 4.2E-13 99.8 14.9 131 50-202 190-341 (534)
200 COG1221 PspF Transcriptional r 98.9 5E-09 1.1E-13 98.0 10.0 192 50-265 72-310 (403)
201 PRK13765 ATP-dependent proteas 98.9 1.6E-08 3.4E-13 100.9 13.1 53 48-114 23-75 (637)
202 PRK11608 pspF phage shock prot 98.9 3E-08 6.6E-13 92.1 14.3 138 54-213 4-169 (326)
203 TIGR02974 phageshock_pspF psp 98.9 1.4E-08 3.1E-13 94.3 12.0 115 87-213 20-162 (329)
204 PRK06835 DNA replication prote 98.9 4.7E-09 1E-13 97.0 8.0 72 88-161 182-259 (329)
205 COG3604 FhlA Transcriptional r 98.9 1.9E-08 4.2E-13 94.9 11.8 191 52-264 219-456 (550)
206 PRK08116 hypothetical protein; 98.9 3.6E-09 7.9E-14 95.4 6.5 102 88-202 113-221 (268)
207 PTZ00111 DNA replication licen 98.8 4.3E-08 9.4E-13 99.8 13.6 151 56-218 450-639 (915)
208 PRK15429 formate hydrogenlyase 98.8 8.6E-08 1.9E-12 97.9 15.9 128 53-202 373-521 (686)
209 PRK15424 propionate catabolism 98.8 6.6E-09 1.4E-13 101.9 7.4 128 53-202 216-373 (538)
210 PRK06921 hypothetical protein; 98.8 1.3E-08 2.7E-13 91.8 8.2 69 88-159 116-188 (266)
211 PRK08181 transposase; Validate 98.8 7.4E-09 1.6E-13 93.1 6.7 73 88-162 105-181 (269)
212 PRK11388 DNA-binding transcrip 98.8 3.1E-08 6.8E-13 100.4 12.0 126 52-202 321-467 (638)
213 KOG2227|consensus 98.8 1.4E-07 3E-12 88.5 15.1 217 31-270 128-385 (529)
214 KOG2035|consensus 98.8 1.1E-07 2.5E-12 83.4 13.4 171 46-247 3-220 (351)
215 PF09336 Vps4_C: Vps4 C termin 98.8 2E-09 4.3E-14 73.9 2.0 45 290-341 18-62 (62)
216 PRK06526 transposase; Provisio 98.8 4.4E-09 9.6E-14 93.9 4.5 73 87-161 96-172 (254)
217 PRK05022 anaerobic nitric oxid 98.8 2.2E-07 4.7E-12 91.7 16.8 127 54-202 185-332 (509)
218 PRK09862 putative ATP-dependen 98.8 7E-08 1.5E-12 93.7 12.9 47 53-113 188-234 (506)
219 PRK10820 DNA-binding transcrip 98.8 6.2E-08 1.3E-12 95.6 12.1 132 49-202 197-349 (520)
220 COG1484 DnaC DNA replication p 98.7 2.5E-08 5.4E-13 89.2 7.8 71 88-160 104-179 (254)
221 PF03215 Rad17: Rad17 cell cyc 98.7 1.4E-07 3.1E-12 92.2 13.3 70 44-120 7-76 (519)
222 PRK05917 DNA polymerase III su 98.7 1.1E-07 2.5E-12 85.8 11.7 113 87-216 17-149 (290)
223 PRK08699 DNA polymerase III su 98.7 6.4E-08 1.4E-12 89.6 10.3 117 87-217 19-168 (325)
224 TIGR02329 propionate_PrpR prop 98.7 1.9E-08 4.2E-13 98.7 6.9 128 53-202 209-358 (526)
225 PF01695 IstB_IS21: IstB-like 98.7 6.6E-09 1.4E-13 87.9 3.1 72 87-160 45-120 (178)
226 PRK09183 transposase/IS protei 98.7 1.8E-08 4E-13 90.4 6.1 74 87-161 100-177 (259)
227 KOG1051|consensus 98.7 1.1E-07 2.5E-12 96.6 11.9 130 56-202 562-711 (898)
228 PF13173 AAA_14: AAA domain 98.7 6.9E-08 1.5E-12 77.2 8.0 69 90-160 3-73 (128)
229 PF13401 AAA_22: AAA domain; P 98.7 9.8E-08 2.1E-12 76.3 8.7 86 89-182 4-113 (131)
230 PF01637 Arch_ATPase: Archaeal 98.7 8.7E-08 1.9E-12 84.1 9.0 177 58-255 1-233 (234)
231 PF14532 Sigma54_activ_2: Sigm 98.7 5.5E-08 1.2E-12 78.9 6.9 88 87-201 19-109 (138)
232 PRK08939 primosomal protein Dn 98.7 6.4E-08 1.4E-12 88.8 7.7 71 88-160 155-229 (306)
233 PRK05818 DNA polymerase III su 98.6 6.1E-07 1.3E-11 79.5 13.2 116 87-216 5-142 (261)
234 PRK07276 DNA polymerase III su 98.6 1.2E-06 2.7E-11 79.3 15.3 167 61-258 7-199 (290)
235 KOG0478|consensus 98.6 2.6E-07 5.6E-12 90.0 11.3 151 57-218 430-608 (804)
236 PF03969 AFG1_ATPase: AFG1-lik 98.6 1E-07 2.2E-12 89.3 8.2 140 87-243 60-209 (362)
237 KOG1970|consensus 98.6 1.8E-06 3.9E-11 82.5 15.2 71 46-121 72-142 (634)
238 KOG0482|consensus 98.6 2.1E-07 4.5E-12 87.8 8.3 177 31-218 316-521 (721)
239 COG1241 MCM2 Predicted ATPase 98.5 3.3E-07 7.2E-12 91.2 8.7 150 55-218 285-465 (682)
240 smart00763 AAA_PrkA PrkA AAA d 98.5 2.9E-07 6.3E-12 85.2 7.4 62 55-122 49-118 (361)
241 PF06068 TIP49: TIP49 C-termin 98.5 6.5E-07 1.4E-11 82.4 8.9 82 55-144 23-106 (398)
242 PRK07132 DNA polymerase III su 98.5 5.7E-06 1.2E-10 75.6 14.8 139 88-247 17-177 (299)
243 TIGR02915 PEP_resp_reg putativ 98.5 1.5E-06 3.3E-11 84.4 11.7 124 54-202 137-284 (445)
244 PRK13406 bchD magnesium chelat 98.5 3.6E-06 7.9E-11 83.6 14.3 135 61-218 8-165 (584)
245 cd01120 RecA-like_NTPases RecA 98.4 1.5E-06 3.3E-11 71.7 10.0 71 92-162 2-99 (165)
246 KOG2228|consensus 98.4 3.4E-06 7.5E-11 76.2 12.5 144 56-217 24-199 (408)
247 PRK10923 glnG nitrogen regulat 98.4 4.7E-06 1E-10 81.5 14.1 186 54-264 136-371 (469)
248 PF12774 AAA_6: Hydrolytic ATP 98.4 8.1E-06 1.8E-10 71.8 13.9 66 88-160 31-96 (231)
249 KOG2680|consensus 98.4 2.4E-05 5.2E-10 69.8 16.5 53 56-115 40-92 (454)
250 PHA00729 NTP-binding motif con 98.4 1.5E-06 3.3E-11 75.5 8.9 27 90-116 18-44 (226)
251 TIGR02237 recomb_radB DNA repa 98.4 1.5E-06 3.2E-11 75.5 7.9 80 83-162 6-111 (209)
252 PRK11361 acetoacetate metaboli 98.3 1.1E-05 2.4E-10 78.6 14.2 101 87-202 164-288 (457)
253 KOG0480|consensus 98.3 2.5E-06 5.5E-11 82.7 8.9 148 54-218 343-524 (764)
254 COG1485 Predicted ATPase [Gene 98.3 1.1E-05 2.4E-10 73.6 12.5 138 86-241 62-210 (367)
255 KOG2383|consensus 98.3 2E-06 4.3E-11 79.4 7.7 159 86-259 111-295 (467)
256 PRK15115 response regulator Gl 98.3 1.2E-05 2.7E-10 78.0 13.7 99 88-201 156-278 (444)
257 PF00910 RNA_helicase: RNA hel 98.3 1.8E-06 3.8E-11 66.8 5.7 25 92-116 1-25 (107)
258 COG1618 Predicted nucleotide k 98.2 2.7E-05 5.9E-10 63.3 11.9 27 88-114 4-30 (179)
259 KOG2170|consensus 98.2 1.2E-05 2.5E-10 71.8 9.7 133 57-203 83-226 (344)
260 KOG0477|consensus 98.2 5.9E-06 1.3E-10 80.0 8.4 63 57-119 450-512 (854)
261 PF12775 AAA_7: P-loop contain 98.2 1.3E-05 2.9E-10 72.4 10.2 121 87-214 31-173 (272)
262 PF00493 MCM: MCM2/3/5 family 98.2 5E-07 1.1E-11 84.1 0.9 145 56-218 24-203 (331)
263 TIGR02688 conserved hypothetic 98.2 7E-06 1.5E-10 77.3 8.4 101 87-201 207-314 (449)
264 cd01124 KaiC KaiC is a circadi 98.2 1.4E-05 3.1E-10 67.9 9.6 71 92-162 2-109 (187)
265 TIGR01818 ntrC nitrogen regula 98.1 1.7E-05 3.8E-10 77.4 10.6 101 87-202 155-279 (463)
266 PRK11823 DNA repair protein Ra 98.1 1.8E-05 3.9E-10 76.6 10.3 79 84-162 75-170 (446)
267 PF13207 AAA_17: AAA domain; P 98.1 3.2E-06 7E-11 66.5 4.2 31 92-122 2-32 (121)
268 TIGR02012 tigrfam_recA protein 98.1 2.6E-05 5.6E-10 71.7 10.4 79 84-162 50-147 (321)
269 PRK09361 radB DNA repair and r 98.1 1.2E-05 2.6E-10 70.7 8.0 40 84-123 18-60 (225)
270 PF00931 NB-ARC: NB-ARC domain 98.1 6.7E-05 1.5E-09 68.3 13.1 41 62-112 2-42 (287)
271 PHA02624 large T antigen; Prov 98.1 2.9E-05 6.3E-10 76.2 10.7 120 86-218 428-558 (647)
272 TIGR01618 phage_P_loop phage n 98.1 2.1E-05 4.5E-10 68.5 8.8 73 88-162 11-95 (220)
273 PF03266 NTPase_1: NTPase; In 98.1 5.3E-06 1.2E-10 69.5 4.8 23 91-113 1-23 (168)
274 PF05707 Zot: Zonular occluden 98.0 7.7E-06 1.7E-10 70.2 5.8 118 92-218 3-142 (193)
275 PF05729 NACHT: NACHT domain 98.0 1.5E-05 3.2E-10 66.0 7.4 23 91-113 2-24 (166)
276 PLN03210 Resistant to P. syrin 98.0 4.2E-05 9.1E-10 82.8 12.2 75 32-116 157-234 (1153)
277 cd01121 Sms Sms (bacterial rad 98.0 3.7E-05 8E-10 72.5 10.3 78 85-162 78-172 (372)
278 KOG1968|consensus 98.0 1.6E-05 3.5E-10 81.8 7.8 201 45-262 309-534 (871)
279 PF06745 KaiC: KaiC; InterPro 98.0 8.6E-05 1.9E-09 65.3 11.5 100 84-184 14-150 (226)
280 PRK15455 PrkA family serine pr 98.0 7.9E-06 1.7E-10 79.7 5.2 61 54-120 74-135 (644)
281 cd00983 recA RecA is a bacter 98.0 4.7E-05 1E-09 70.1 10.1 78 85-162 51-147 (325)
282 PRK07261 topology modulation p 98.0 2.2E-05 4.8E-10 66.0 7.3 34 91-124 2-35 (171)
283 PF13604 AAA_30: AAA domain; P 98.0 0.00017 3.6E-09 62.1 12.8 99 89-201 18-132 (196)
284 PRK08118 topology modulation p 98.0 2.2E-05 4.7E-10 65.8 7.0 32 91-122 3-34 (167)
285 COG3283 TyrR Transcriptional r 98.0 3E-05 6.4E-10 70.8 8.2 134 47-202 195-344 (511)
286 PF06309 Torsin: Torsin; Inte 98.0 3E-05 6.5E-10 60.9 7.2 52 57-113 26-77 (127)
287 PRK08533 flagellar accessory p 98.0 0.0001 2.3E-09 65.0 11.4 77 85-161 20-130 (230)
288 PRK00131 aroK shikimate kinase 97.9 1.1E-05 2.5E-10 67.5 4.7 35 87-121 2-36 (175)
289 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00014 3.1E-09 64.5 11.4 39 83-121 15-56 (237)
290 PRK09354 recA recombinase A; P 97.9 0.0001 2.2E-09 68.4 10.7 79 84-162 55-152 (349)
291 KOG0481|consensus 97.9 0.00048 1E-08 65.7 15.1 150 57-218 332-510 (729)
292 PRK10365 transcriptional regul 97.9 3.3E-05 7.1E-10 74.9 7.7 101 87-202 160-284 (441)
293 PF13191 AAA_16: AAA ATPase do 97.9 1.3E-05 2.8E-10 67.8 4.2 59 58-125 2-63 (185)
294 KOG1942|consensus 97.9 2.3E-05 4.9E-10 69.7 5.6 81 56-144 38-120 (456)
295 KOG0479|consensus 97.9 0.00025 5.4E-09 68.6 12.8 151 57-218 302-480 (818)
296 cd01394 radB RadB. The archaea 97.9 9.6E-05 2.1E-09 64.6 9.5 40 84-123 14-56 (218)
297 cd01123 Rad51_DMC1_radA Rad51_ 97.8 7.9E-05 1.7E-09 65.8 8.8 79 84-162 14-129 (235)
298 PF14516 AAA_35: AAA-like doma 97.8 0.00089 1.9E-08 62.4 16.2 40 87-126 29-71 (331)
299 PRK14722 flhF flagellar biosyn 97.8 0.00011 2.4E-09 69.0 10.0 110 87-208 135-265 (374)
300 cd01129 PulE-GspE PulE/GspE Th 97.8 9.1E-05 2E-09 66.8 8.9 94 52-158 56-159 (264)
301 COG3267 ExeA Type II secretory 97.8 0.00053 1.2E-08 60.1 13.2 166 91-266 53-255 (269)
302 PRK04296 thymidine kinase; Pro 97.8 0.00016 3.4E-09 61.9 10.0 30 91-120 4-36 (190)
303 PRK10536 hypothetical protein; 97.8 0.00029 6.3E-09 62.5 11.4 23 90-112 75-97 (262)
304 cd01131 PilT Pilus retraction 97.8 5E-05 1.1E-09 65.4 6.5 67 91-157 3-83 (198)
305 cd01393 recA_like RecA is a b 97.8 0.00011 2.4E-09 64.5 8.7 41 84-124 14-63 (226)
306 PRK06067 flagellar accessory p 97.8 0.00016 3.6E-09 63.9 9.4 78 84-161 20-133 (234)
307 PRK06581 DNA polymerase III su 97.8 0.0079 1.7E-07 52.8 19.2 116 88-217 14-144 (263)
308 COG3854 SpoIIIAA ncharacterize 97.7 0.00024 5.2E-09 61.3 9.6 74 87-160 135-230 (308)
309 cd01128 rho_factor Transcripti 97.7 0.00018 4E-09 64.0 9.3 29 87-115 14-42 (249)
310 PRK13947 shikimate kinase; Pro 97.7 3.7E-05 7.9E-10 64.5 4.4 31 91-121 3-33 (171)
311 PRK03839 putative kinase; Prov 97.7 3.2E-05 6.9E-10 65.5 4.0 31 91-121 2-32 (180)
312 PRK00625 shikimate kinase; Pro 97.7 3.6E-05 7.8E-10 64.8 4.2 31 91-121 2-32 (173)
313 PRK00771 signal recognition pa 97.7 0.00025 5.4E-09 68.2 10.4 37 87-123 93-132 (437)
314 cd03283 ABC_MutS-like MutS-lik 97.7 0.00028 6E-09 60.9 9.6 23 89-111 25-47 (199)
315 PRK14974 cell division protein 97.7 0.00065 1.4E-08 63.1 12.6 73 88-160 139-234 (336)
316 PRK09376 rho transcription ter 97.7 0.00027 5.8E-09 66.3 10.0 26 89-114 169-194 (416)
317 PRK13764 ATPase; Provisional 97.7 0.00011 2.4E-09 72.9 7.9 71 87-158 255-334 (602)
318 cd00464 SK Shikimate kinase (S 97.7 4.2E-05 9.2E-10 62.8 4.1 31 91-121 1-31 (154)
319 PRK06762 hypothetical protein; 97.7 0.00011 2.4E-09 61.2 6.7 37 90-126 3-39 (166)
320 TIGR00416 sms DNA repair prote 97.7 0.0003 6.6E-09 68.2 10.5 78 85-162 90-184 (454)
321 cd01122 GP4d_helicase GP4d_hel 97.7 0.00021 4.6E-09 64.6 8.9 37 86-122 27-67 (271)
322 COG4650 RtcR Sigma54-dependent 97.7 0.00018 3.9E-09 64.2 8.0 74 88-161 207-295 (531)
323 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.00036 7.9E-09 62.7 10.2 39 84-122 31-72 (259)
324 PF00437 T2SE: Type II/IV secr 97.7 7.2E-05 1.6E-09 67.7 5.7 99 50-158 98-207 (270)
325 TIGR01420 pilT_fam pilus retra 97.7 0.00016 3.4E-09 67.8 8.1 71 88-158 121-205 (343)
326 PF13671 AAA_33: AAA domain; P 97.7 3.9E-05 8.4E-10 62.1 3.5 27 92-118 2-28 (143)
327 KOG3347|consensus 97.7 4.3E-05 9.2E-10 61.3 3.4 33 89-121 7-39 (176)
328 COG5271 MDN1 AAA ATPase contai 97.6 0.0006 1.3E-08 73.1 12.5 122 87-218 1541-1687(4600)
329 TIGR02782 TrbB_P P-type conjug 97.6 0.00018 4E-09 66.0 8.1 71 88-158 131-214 (299)
330 PRK04328 hypothetical protein; 97.6 0.0006 1.3E-08 60.9 11.2 29 84-112 18-46 (249)
331 COG4619 ABC-type uncharacteriz 97.6 0.00025 5.5E-09 58.3 7.8 27 87-113 27-53 (223)
332 PRK05973 replicative DNA helic 97.6 0.00063 1.4E-08 60.0 11.0 39 84-122 59-100 (237)
333 cd00544 CobU Adenosylcobinamid 97.6 0.00022 4.8E-09 59.7 7.8 69 92-162 2-87 (169)
334 COG0703 AroK Shikimate kinase 97.6 4.7E-05 1E-09 63.2 3.6 32 90-121 3-34 (172)
335 TIGR02525 plasmid_TraJ plasmid 97.6 0.00019 4E-09 67.7 8.1 69 90-158 150-235 (372)
336 PRK12723 flagellar biosynthesi 97.6 0.00047 1E-08 65.3 10.8 108 88-206 173-303 (388)
337 cd00984 DnaB_C DnaB helicase C 97.6 0.00044 9.6E-09 61.3 10.1 38 85-122 9-50 (242)
338 PRK13695 putative NTPase; Prov 97.6 0.0006 1.3E-08 57.4 10.3 23 91-113 2-24 (174)
339 KOG1051|consensus 97.6 0.00045 9.7E-09 71.0 11.1 144 55-218 185-347 (898)
340 PRK13949 shikimate kinase; Pro 97.6 5.7E-05 1.2E-09 63.4 3.9 32 90-121 2-33 (169)
341 cd01130 VirB11-like_ATPase Typ 97.6 6.6E-05 1.4E-09 64.0 4.4 71 87-157 23-109 (186)
342 PRK14532 adenylate kinase; Pro 97.6 6E-05 1.3E-09 64.3 4.0 30 91-120 2-31 (188)
343 PRK13900 type IV secretion sys 97.6 0.00019 4.1E-09 66.8 7.5 72 87-158 158-245 (332)
344 TIGR03880 KaiC_arch_3 KaiC dom 97.6 0.00066 1.4E-08 59.6 10.6 39 84-122 11-52 (224)
345 PRK13948 shikimate kinase; Pro 97.6 8.6E-05 1.9E-09 63.0 4.8 35 87-121 8-42 (182)
346 PRK05800 cobU adenosylcobinami 97.6 0.00036 7.8E-09 58.5 8.3 68 91-162 3-90 (170)
347 PRK06217 hypothetical protein; 97.6 7E-05 1.5E-09 63.7 4.1 31 91-121 3-33 (183)
348 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 6.8E-05 1.5E-09 63.6 4.0 33 92-126 2-34 (183)
349 COG1102 Cmk Cytidylate kinase 97.6 6.7E-05 1.5E-09 61.1 3.5 28 92-119 3-30 (179)
350 TIGR02858 spore_III_AA stage I 97.6 0.00034 7.4E-09 63.1 8.5 26 89-114 111-136 (270)
351 cd00227 CPT Chloramphenicol (C 97.6 7.4E-05 1.6E-09 63.0 3.9 33 90-122 3-35 (175)
352 COG2804 PulE Type II secretory 97.5 0.00033 7.1E-09 67.3 8.5 97 49-158 231-337 (500)
353 PF00448 SRP54: SRP54-type pro 97.5 0.00084 1.8E-08 57.7 10.2 72 89-160 1-95 (196)
354 PRK11889 flhF flagellar biosyn 97.5 0.0016 3.4E-08 61.4 12.6 73 88-160 240-332 (436)
355 COG4088 Predicted nucleotide k 97.5 0.00031 6.8E-09 59.6 7.1 26 91-116 3-28 (261)
356 TIGR03499 FlhF flagellar biosy 97.5 0.0006 1.3E-08 62.1 9.5 37 88-124 193-234 (282)
357 cd03216 ABC_Carb_Monos_I This 97.5 0.00072 1.6E-08 56.3 9.2 73 87-159 24-111 (163)
358 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00027 5.8E-09 59.7 6.6 72 87-159 23-100 (177)
359 cd02021 GntK Gluconate kinase 97.5 9.7E-05 2.1E-09 60.5 3.8 28 92-119 2-29 (150)
360 PRK14531 adenylate kinase; Pro 97.5 0.00011 2.4E-09 62.5 4.2 30 91-120 4-33 (183)
361 cd02020 CMPK Cytidine monophos 97.5 0.0001 2.2E-09 59.8 3.9 30 92-121 2-31 (147)
362 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00059 1.3E-08 55.6 8.3 71 87-159 24-99 (144)
363 PRK14530 adenylate kinase; Pro 97.5 0.00012 2.5E-09 64.0 4.4 30 91-120 5-34 (215)
364 PRK04841 transcriptional regul 97.5 0.0036 7.8E-08 66.3 16.5 31 90-121 33-63 (903)
365 PRK05057 aroK shikimate kinase 97.5 0.00014 3E-09 61.2 4.7 34 89-122 4-37 (172)
366 cd01428 ADK Adenylate kinase ( 97.5 0.0001 2.2E-09 63.0 3.9 29 92-120 2-30 (194)
367 PLN03187 meiotic recombination 97.5 0.00075 1.6E-08 62.9 9.8 41 84-124 121-170 (344)
368 PRK06547 hypothetical protein; 97.5 0.00013 2.7E-09 61.4 4.3 35 87-121 13-47 (172)
369 PTZ00088 adenylate kinase 1; P 97.5 0.00014 3.1E-09 64.0 4.7 32 89-120 6-37 (229)
370 TIGR02533 type_II_gspE general 97.5 0.00051 1.1E-08 67.2 9.0 94 52-158 218-321 (486)
371 PRK04301 radA DNA repair and r 97.5 0.00064 1.4E-08 63.0 9.2 41 84-124 97-146 (317)
372 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.0018 3.8E-08 56.5 11.4 21 90-110 30-50 (213)
373 KOG2543|consensus 97.5 0.0014 3E-08 60.7 10.9 61 56-125 6-66 (438)
374 TIGR01313 therm_gnt_kin carboh 97.5 0.0001 2.2E-09 61.3 3.5 28 92-119 1-28 (163)
375 COG2805 PilT Tfp pilus assembl 97.5 0.00022 4.8E-09 63.9 5.6 76 85-160 120-210 (353)
376 cd00046 DEXDc DEAD-like helica 97.5 0.00024 5.1E-09 56.4 5.5 24 91-114 2-25 (144)
377 cd03115 SRP The signal recogni 97.5 0.0015 3.2E-08 54.9 10.5 33 91-123 2-37 (173)
378 cd03238 ABC_UvrA The excision 97.4 0.001 2.2E-08 56.1 9.3 25 87-111 19-43 (176)
379 COG1373 Predicted ATPase (AAA+ 97.4 0.00095 2.1E-08 63.8 10.2 68 91-160 39-106 (398)
380 TIGR02655 circ_KaiC circadian 97.4 0.00085 1.8E-08 65.9 10.0 79 84-162 258-367 (484)
381 PRK12724 flagellar biosynthesi 97.4 0.0025 5.4E-08 60.6 12.7 111 89-206 223-350 (432)
382 TIGR02238 recomb_DMC1 meiotic 97.4 0.00078 1.7E-08 62.2 9.2 41 84-124 91-140 (313)
383 TIGR02236 recomb_radA DNA repa 97.4 0.00087 1.9E-08 61.9 9.5 41 84-124 90-139 (310)
384 PRK13946 shikimate kinase; Pro 97.4 0.00014 3E-09 61.9 3.9 33 89-121 10-42 (184)
385 PF04665 Pox_A32: Poxvirus A32 97.4 0.00075 1.6E-08 59.5 8.5 116 87-217 11-153 (241)
386 PRK03731 aroL shikimate kinase 97.4 0.00017 3.7E-09 60.4 4.4 32 90-121 3-34 (171)
387 PRK13833 conjugal transfer pro 97.4 0.00059 1.3E-08 63.0 8.2 71 87-157 142-224 (323)
388 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00091 2E-08 55.2 8.7 72 87-160 23-110 (157)
389 TIGR00767 rho transcription te 97.4 0.00045 9.8E-09 65.1 7.4 28 87-114 166-193 (415)
390 PRK10436 hypothetical protein; 97.4 0.00053 1.1E-08 66.5 8.1 94 52-158 194-297 (462)
391 PRK09519 recA DNA recombinatio 97.4 0.0012 2.5E-08 67.5 10.8 79 84-162 55-152 (790)
392 cd02027 APSK Adenosine 5'-phos 97.4 0.00067 1.5E-08 55.6 7.6 33 92-124 2-37 (149)
393 PHA02774 E1; Provisional 97.4 0.0011 2.5E-08 64.9 10.2 34 89-122 434-468 (613)
394 cd03243 ABC_MutS_homologs The 97.4 0.0017 3.7E-08 56.0 10.5 23 88-110 28-50 (202)
395 PF13245 AAA_19: Part of AAA d 97.4 0.00034 7.4E-09 50.3 5.0 23 91-113 12-35 (76)
396 TIGR00064 ftsY signal recognit 97.4 0.0048 1E-07 55.9 13.4 37 87-123 70-109 (272)
397 TIGR01360 aden_kin_iso1 adenyl 97.4 0.0002 4.2E-09 60.9 4.1 29 91-119 5-33 (188)
398 PLN02200 adenylate kinase fami 97.4 0.00024 5.1E-09 62.9 4.7 38 87-126 41-78 (234)
399 KOG0058|consensus 97.4 0.00076 1.6E-08 67.2 8.6 28 86-113 491-518 (716)
400 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00047 1E-08 61.6 6.6 34 92-125 2-38 (249)
401 TIGR02538 type_IV_pilB type IV 97.3 0.00068 1.5E-08 67.7 8.3 94 52-158 292-395 (564)
402 TIGR02655 circ_KaiC circadian 97.3 0.0015 3.3E-08 64.1 10.7 39 84-122 16-58 (484)
403 TIGR02788 VirB11 P-type DNA tr 97.3 0.00035 7.6E-09 64.5 5.9 72 87-158 142-228 (308)
404 PRK14528 adenylate kinase; Pro 97.3 0.00022 4.9E-09 60.8 4.2 31 90-120 2-32 (186)
405 PTZ00035 Rad51 protein; Provis 97.3 0.0012 2.7E-08 61.5 9.5 29 84-112 113-141 (337)
406 PRK09302 circadian clock prote 97.3 0.0018 4E-08 64.0 11.3 78 85-162 27-144 (509)
407 PRK06696 uridine kinase; Valid 97.3 0.00059 1.3E-08 59.9 7.0 39 88-126 21-62 (223)
408 PRK10416 signal recognition pa 97.3 0.0046 9.9E-08 57.2 13.1 35 88-122 113-150 (318)
409 PF05970 PIF1: PIF1-like helic 97.3 0.00075 1.6E-08 63.8 8.0 29 87-115 20-48 (364)
410 PRK13894 conjugal transfer ATP 97.3 0.00088 1.9E-08 62.0 8.2 72 87-158 146-229 (319)
411 PRK02496 adk adenylate kinase; 97.3 0.00023 5E-09 60.4 4.0 30 91-120 3-32 (184)
412 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0024 5.3E-08 56.1 10.6 38 84-121 15-55 (229)
413 PRK13851 type IV secretion sys 97.3 0.00029 6.3E-09 65.7 4.9 73 86-158 159-246 (344)
414 smart00534 MUTSac ATPase domai 97.3 0.0041 8.8E-08 52.9 11.6 19 92-110 2-20 (185)
415 TIGR01351 adk adenylate kinase 97.3 0.00022 4.8E-09 62.0 3.8 29 92-120 2-30 (210)
416 PRK04040 adenylate kinase; Pro 97.3 0.00028 6.2E-09 60.2 4.4 26 89-114 2-27 (188)
417 PF05272 VirE: Virulence-assoc 97.3 0.00054 1.2E-08 58.9 6.1 106 87-213 50-162 (198)
418 COG0467 RAD55 RecA-superfamily 97.3 0.0049 1.1E-07 55.4 12.6 101 84-184 18-160 (260)
419 cd02019 NK Nucleoside/nucleoti 97.3 0.00041 8.9E-09 48.9 4.4 22 92-113 2-23 (69)
420 PF13238 AAA_18: AAA domain; P 97.3 0.00022 4.7E-09 56.4 3.3 22 92-113 1-22 (129)
421 PRK00279 adk adenylate kinase; 97.3 0.00027 5.8E-09 61.7 4.1 30 91-120 2-31 (215)
422 COG1066 Sms Predicted ATP-depe 97.3 0.0025 5.3E-08 59.7 10.3 97 86-182 90-207 (456)
423 PRK14527 adenylate kinase; Pro 97.3 0.00026 5.6E-09 60.6 3.8 33 87-119 4-36 (191)
424 TIGR02524 dot_icm_DotB Dot/Icm 97.3 0.00099 2.2E-08 62.6 7.9 71 88-158 133-222 (358)
425 COG3284 AcoR Transcriptional a 97.2 0.00029 6.3E-09 69.0 4.3 102 89-202 336-457 (606)
426 PLN03186 DNA repair protein RA 97.2 0.0015 3.2E-08 60.9 8.7 41 84-124 118-167 (342)
427 PRK12608 transcription termina 97.2 0.0014 3E-08 61.4 8.4 27 88-114 132-158 (380)
428 COG1936 Predicted nucleotide k 97.2 0.00024 5.3E-09 58.6 3.0 30 91-121 2-31 (180)
429 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00046 9.9E-09 55.2 4.5 30 87-116 20-49 (133)
430 COG0563 Adk Adenylate kinase a 97.2 0.00036 7.7E-09 59.0 4.1 26 91-116 2-27 (178)
431 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0048 1E-07 53.1 11.1 21 90-110 29-49 (200)
432 PF06414 Zeta_toxin: Zeta toxi 97.2 0.0013 2.8E-08 56.6 7.6 69 87-156 13-100 (199)
433 cd03247 ABCC_cytochrome_bd The 97.2 0.0021 4.5E-08 54.3 8.7 27 87-113 26-52 (178)
434 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0012 2.5E-08 68.2 8.4 98 90-201 369-478 (744)
435 TIGR01448 recD_rel helicase, p 97.2 0.0014 2.9E-08 67.4 8.8 101 90-205 339-458 (720)
436 PF08433 KTI12: Chromatin asso 97.2 0.00082 1.8E-08 60.7 6.4 68 92-160 4-82 (270)
437 cd03228 ABCC_MRP_Like The MRP 97.2 0.0022 4.8E-08 53.7 8.7 27 87-113 26-52 (171)
438 PF13481 AAA_25: AAA domain; P 97.2 0.0012 2.5E-08 56.4 7.1 77 87-163 30-156 (193)
439 PF00406 ADK: Adenylate kinase 97.2 0.00029 6.3E-09 57.8 3.1 31 94-126 1-31 (151)
440 PRK08154 anaerobic benzoate ca 97.2 0.0006 1.3E-08 63.0 5.5 36 86-121 130-165 (309)
441 PRK12726 flagellar biosynthesi 97.2 0.0077 1.7E-07 56.6 12.7 60 61-122 180-242 (407)
442 PF02562 PhoH: PhoH-like prote 97.2 0.0011 2.4E-08 57.1 6.7 23 91-113 21-43 (205)
443 TIGR01425 SRP54_euk signal rec 97.2 0.0032 7E-08 60.3 10.4 73 88-160 99-194 (429)
444 PF13479 AAA_24: AAA domain 97.2 0.00093 2E-08 58.2 6.3 67 89-160 3-80 (213)
445 PLN02674 adenylate kinase 97.2 0.00087 1.9E-08 59.4 6.0 37 88-126 30-66 (244)
446 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0015 3.2E-08 60.4 7.7 60 55-120 59-120 (358)
447 cd03214 ABC_Iron-Siderophores_ 97.2 0.0018 3.8E-08 54.8 7.7 27 87-113 23-49 (180)
448 PRK10867 signal recognition pa 97.1 0.004 8.7E-08 59.9 10.8 74 87-160 98-195 (433)
449 PRK04182 cytidylate kinase; Pr 97.1 0.00044 9.5E-09 58.2 3.9 29 91-119 2-30 (180)
450 COG4178 ABC-type uncharacteriz 97.1 0.0029 6.4E-08 62.6 10.0 28 86-113 416-443 (604)
451 PF12780 AAA_8: P-loop contain 97.1 0.0031 6.7E-08 56.9 9.4 91 57-159 9-100 (268)
452 TIGR02239 recomb_RAD51 DNA rep 97.1 0.0016 3.5E-08 60.3 7.8 41 84-124 91-140 (316)
453 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.0074 1.6E-07 52.2 11.4 23 89-111 29-51 (204)
454 PRK01184 hypothetical protein; 97.1 0.00046 9.9E-09 58.6 3.8 29 91-120 3-31 (184)
455 cd03227 ABC_Class2 ABC-type Cl 97.1 0.0037 8E-08 52.0 9.1 24 89-112 21-44 (162)
456 PRK05703 flhF flagellar biosyn 97.1 0.0039 8.5E-08 60.0 10.5 36 89-124 221-261 (424)
457 PRK13889 conjugal transfer rel 97.1 0.0018 3.9E-08 68.1 8.7 102 90-205 363-476 (988)
458 cd03246 ABCC_Protease_Secretio 97.1 0.0039 8.5E-08 52.4 9.3 27 87-113 26-52 (173)
459 PF08423 Rad51: Rad51; InterP 97.1 0.0024 5.2E-08 57.3 8.4 119 84-205 33-191 (256)
460 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0056 1.2E-07 53.7 10.4 24 88-111 30-53 (222)
461 PTZ00202 tuzin; Provisional 97.1 0.0052 1.1E-07 58.5 10.7 63 52-123 258-320 (550)
462 PRK05541 adenylylsulfate kinas 97.1 0.00058 1.3E-08 57.5 4.1 28 87-114 5-32 (176)
463 PF13086 AAA_11: AAA domain; P 97.1 0.00079 1.7E-08 58.9 5.1 23 91-113 19-41 (236)
464 COG5192 BMS1 GTP-binding prote 97.1 0.0033 7.2E-08 60.8 9.3 70 87-157 67-144 (1077)
465 PRK10078 ribose 1,5-bisphospho 97.1 0.00055 1.2E-08 58.3 3.8 29 90-118 3-31 (186)
466 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00057 1.2E-08 57.0 3.8 30 91-120 2-31 (171)
467 PRK08233 hypothetical protein; 97.1 0.0007 1.5E-08 57.1 4.4 33 90-122 4-37 (182)
468 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0053 1.2E-07 51.2 9.6 27 87-113 25-51 (166)
469 PRK12727 flagellar biosynthesi 97.0 0.0066 1.4E-07 59.4 11.3 27 87-113 348-374 (559)
470 PRK09302 circadian clock prote 97.0 0.0043 9.3E-08 61.4 10.4 78 85-162 269-377 (509)
471 PF13521 AAA_28: AAA domain; P 97.0 0.00059 1.3E-08 56.7 3.7 26 92-118 2-27 (163)
472 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.006 1.3E-07 50.4 9.5 23 91-113 4-26 (159)
473 PRK14526 adenylate kinase; Pro 97.0 0.00068 1.5E-08 58.9 4.1 29 91-119 2-30 (211)
474 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0044 9.6E-08 52.0 8.9 27 87-113 24-50 (173)
475 PHA02530 pseT polynucleotide k 97.0 0.0007 1.5E-08 62.2 4.2 29 90-118 3-32 (300)
476 COG0529 CysC Adenylylsulfate k 97.0 0.0034 7.3E-08 52.2 7.6 40 87-126 21-63 (197)
477 COG5245 DYN1 Dynein, heavy cha 97.0 0.0017 3.6E-08 69.2 7.1 39 86-124 1491-1530(3164)
478 cd03213 ABCG_EPDR ABCG transpo 97.0 0.0052 1.1E-07 52.6 9.2 27 87-113 33-59 (194)
479 PLN02199 shikimate kinase 97.0 0.00086 1.9E-08 60.7 4.4 34 88-121 101-134 (303)
480 COG2909 MalT ATP-dependent tra 97.0 0.021 4.5E-07 58.2 14.4 102 88-202 36-170 (894)
481 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0016 3.5E-08 60.5 6.2 33 89-121 162-194 (325)
482 PF10443 RNA12: RNA12 protein; 97.0 0.032 6.9E-07 53.0 14.8 37 88-126 16-54 (431)
483 PRK10875 recD exonuclease V su 97.0 0.0026 5.6E-08 63.9 8.0 24 90-113 168-191 (615)
484 PRK00889 adenylylsulfate kinas 97.0 0.0013 2.8E-08 55.4 5.1 36 88-123 3-41 (175)
485 PF09848 DUF2075: Uncharacteri 97.0 0.001 2.2E-08 62.7 4.9 23 91-113 3-25 (352)
486 TIGR01447 recD exodeoxyribonuc 97.0 0.0021 4.5E-08 64.4 7.3 24 90-113 161-184 (586)
487 PRK05480 uridine/cytidine kina 96.9 0.0014 3E-08 56.8 5.3 38 87-124 4-42 (209)
488 PRK12338 hypothetical protein; 96.9 0.00098 2.1E-08 61.2 4.4 31 88-118 3-33 (319)
489 COG1855 ATPase (PilT family) [ 96.9 0.00054 1.2E-08 64.6 2.7 45 53-114 244-288 (604)
490 PF01745 IPT: Isopentenyl tran 96.9 0.001 2.3E-08 56.9 4.2 37 91-127 3-39 (233)
491 PRK08099 bifunctional DNA-bind 96.9 0.0018 3.9E-08 61.8 6.2 29 90-118 220-248 (399)
492 PRK12339 2-phosphoglycerate ki 96.9 0.0012 2.6E-08 56.7 4.5 29 89-117 3-31 (197)
493 PRK14529 adenylate kinase; Pro 96.9 0.00085 1.8E-08 58.7 3.6 28 91-118 2-29 (223)
494 PF08303 tRNA_lig_kinase: tRNA 96.9 0.0026 5.7E-08 52.3 6.2 60 95-158 5-64 (168)
495 COG2874 FlaH Predicted ATPases 96.9 0.0062 1.3E-07 52.2 8.6 117 86-213 25-178 (235)
496 PF01583 APS_kinase: Adenylyls 96.9 0.0011 2.4E-08 54.5 3.9 38 90-127 3-43 (156)
497 cd01125 repA Hexameric Replica 96.9 0.0075 1.6E-07 53.5 9.6 21 92-112 4-24 (239)
498 TIGR00959 ffh signal recogniti 96.9 0.0098 2.1E-07 57.2 10.9 73 88-160 98-194 (428)
499 PF00154 RecA: recA bacterial 96.9 0.0058 1.3E-07 56.3 8.7 115 87-204 51-192 (322)
500 PLN02459 probable adenylate ki 96.8 0.0013 2.8E-08 58.7 4.3 30 90-119 30-59 (261)
No 1
>KOG0738|consensus
Probab=100.00 E-value=8e-55 Score=389.76 Aligned_cols=294 Identities=49% Similarity=0.811 Sum_probs=264.8
Q ss_pred CCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHH
Q psy7809 30 PNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV 109 (343)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~i 109 (343)
....++..+.+.++++++...|.+.|+||.|++++|+.|++.+..|+..|++|.++..|+++||++||||||||+||+++
T Consensus 186 ~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAv 265 (491)
T KOG0738|consen 186 DSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAV 265 (491)
T ss_pred CcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHH
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC---CCchhhhHHHHHHHhhhcccCCC
Q psy7809 110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG---SREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 110 a~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~---~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
|.+++..|+.|+.+.+.++|-|++++.++-+|..|+.++|++|||||||.|+.. ..+++.++++.++|+.+||+...
T Consensus 266 ATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~ 345 (491)
T KOG0738|consen 266 ATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG 345 (491)
T ss_pred HHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999973 55788999999999999999876
Q ss_pred CCCC-CCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHH
Q psy7809 187 GSGD-KGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLC 257 (343)
Q Consensus 187 ~~~~-~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 257 (343)
.... ..|+|+++||-||+||++++|||+++|+ |..++++.++......+++++.||+.++||||.||.++|
T Consensus 346 t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 346 TLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred ccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 5433 3588899999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy7809 258 QEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWN 337 (343)
Q Consensus 258 ~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~ 337 (343)
+.|.+.++||..... ++++.-+ ...+... .| ++.+||+.|+++++|+++..++.+|++|.
T Consensus 426 reAsm~~mRR~i~g~--------~~~ei~~----lakE~~~-~p-------v~~~Dfe~Al~~v~pSvs~~d~~k~ekW~ 485 (491)
T KOG0738|consen 426 REASMMAMRRKIAGL--------TPREIRQ----LAKEEPK-MP-------VTNEDFEEALRKVRPSVSAADLEKYEKWM 485 (491)
T ss_pred HHHHHHHHHHHHhcC--------CcHHhhh----hhhhccc-cc-------cchhhHHHHHHHcCcCCCHHHHHHHHHHH
Confidence 999999999887611 1111100 0111111 24 99999999999999999999999999999
Q ss_pred HHhCCC
Q psy7809 338 ELYGSR 343 (343)
Q Consensus 338 ~~~~~~ 343 (343)
+.||||
T Consensus 486 ~efGS~ 491 (491)
T KOG0738|consen 486 DEFGSC 491 (491)
T ss_pred HHhcCC
Confidence 999996
No 2
>KOG0739|consensus
Probab=100.00 E-value=7.2e-52 Score=359.35 Aligned_cols=300 Identities=41% Similarity=0.704 Sum_probs=272.0
Q ss_pred ChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 35 NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
...++..+...++...|.+.|+|+.|++..|++|++.+++|...|++|.+...|++++|||||||||||+||+++|.+.+
T Consensus 112 ~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 112 KKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred HHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 45578888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 115 ~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
..|+.|+.+++++++.|++++.+..+|..|+.+.|+||||||||.+|+. .++++.++++...|+.+|++.... ..+
T Consensus 192 STFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d--~~g 269 (439)
T KOG0739|consen 192 STFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND--NDG 269 (439)
T ss_pred CceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC--CCc
Confidence 9999999999999999999999999999999999999999999999984 556788999999999999998765 468
Q ss_pred EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCC-CCCCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEI-RKDPNVDVATLSKQLIGYSGSDIRDLCQEIILI 263 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~-~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~ 263 (343)
++|+++||-||.||.+++|||+++|+ |..+++.++... +...+.|+.+|+++|+||||+||.-+++.|++.
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence 99999999999999999999999998 999999999887 556889999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCC----------------CCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCH
Q psy7809 264 AAREVIQNAGFTGVNSKP----------------PDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDG 327 (343)
Q Consensus 264 a~~r~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~ 327 (343)
.+|+...++||..+...+ ++..+-.|+.+.++.+-.++ ||+.||.+++...+|++..
T Consensus 350 PvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~-------vt~~D~~k~l~~tkPTvn~ 422 (439)
T KOG0739|consen 350 PVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPP-------VTMRDFLKSLSRTKPTVNE 422 (439)
T ss_pred hHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCC-------ccHHHHHHHHhhcCCCCCH
Confidence 999999999986654422 22233344455555555555 9999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q psy7809 328 ALIRKYKRWNELYGSR 343 (343)
Q Consensus 328 ~~~~~~~~~~~~~~~~ 343 (343)
+++.+.++|.+.||.+
T Consensus 423 ~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 423 DDLLKHEKFTEDFGQE 438 (439)
T ss_pred HHHHHHHHHHHhhccC
Confidence 9999999999999963
No 3
>KOG0730|consensus
Probab=100.00 E-value=8.8e-50 Score=378.90 Aligned_cols=260 Identities=38% Similarity=0.645 Sum_probs=243.5
Q ss_pred hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..|.++.+.|+++|+||+|++++|+.|++.+.+|..++..|..+ +.+|+|||||||||||||++||++|++.+++|+.+
T Consensus 420 a~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 420 ALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred hhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 34667788999999999999999999999999999999999976 69999999999999999999999999999999999
Q ss_pred cCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 121 LPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 121 ~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
.++++.++|+|++++.++.+|+.|+..+||||||||||.++... ..++...+++++|+..|+++.... +|+||++
T Consensus 500 kgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k---~V~ViAA 576 (693)
T KOG0730|consen 500 KGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK---NVLVIAA 576 (693)
T ss_pred cCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC---cEEEEec
Confidence 99999999999999999999999999999999999999999843 334668999999999999997754 8999999
Q ss_pred cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
||+|+.||++++| ||++.|+ |.+||+.+++++.+..++|+..||+.|+||||+||..+|++|...|+++.
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999998 99999999999999999999999999999999999999999999999987
Q ss_pred HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy7809 269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNEL 339 (343)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~ 339 (343)
... ..|+.+||++|++..+++++.++++.|+.|.+.
T Consensus 657 i~a-----------------------------------~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 657 IEA-----------------------------------TEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ccc-----------------------------------ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 651 129999999999999999999999999999864
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-49 Score=348.66 Aligned_cols=238 Identities=41% Similarity=0.638 Sum_probs=218.4
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
-+.+.|.++|+||+|++++++.|++.+..|+.+|++|... +.||+|||||||||||||.||||+|++.++.|+.+..++
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 3678899999999999999999999999999999999975 899999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
|..+|.|+....++++|..|+.++||||||||||++..... ....-.+.+-+|+.+||++... .+|-||++|
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~---~nvKVI~AT 297 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR---GNVKVIMAT 297 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC---CCeEEEEec
Confidence 99999999999999999999999999999999999987422 2223356666777788888664 489999999
Q ss_pred CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
|+++.|||+|+| ||++.|. |.+||+++.+.+.+..++||+.||+.++|+||+||+++|.+|.+.|+|+..
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc
Confidence 999999999999 9999998 999999999999999999999999999999999999999999999999865
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK 323 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 323 (343)
. .||++||.+|++++..
T Consensus 378 ~-------------------------------------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 D-------------------------------------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred C-------------------------------------eecHHHHHHHHHHHHh
Confidence 3 3999999999999854
No 5
>KOG0733|consensus
Probab=100.00 E-value=2.9e-48 Score=364.08 Aligned_cols=276 Identities=36% Similarity=0.570 Sum_probs=247.5
Q ss_pred hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..|+.+...|.++|+||+|+++++.+|...+.+|..+|.++..+ +..|.|||||||||||||.||+++|++.+.+|+.|
T Consensus 497 akREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 497 AKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred hhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 34777889999999999999999999999999999999999975 78899999999999999999999999999999999
Q ss_pred cCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 121 LPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 121 ~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
..++|.++|+|+++..++.+|..|+.++|||||+||+|.|++. ........+++++|+..|+++.... +|.||++
T Consensus 577 KGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~---gV~viaA 653 (802)
T KOG0733|consen 577 KGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR---GVYVIAA 653 (802)
T ss_pred cCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc---ceEEEee
Confidence 9999999999999999999999999999999999999999984 3345677899999999999997755 8999999
Q ss_pred cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhc--CCCCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHH
Q psy7809 199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLG--EIRKDPNVDVATLSKQLI--GYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~--~~~~~~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a 264 (343)
||+|+.+||+++| ||++.++ |.+||+.+.+ +..+.+++|++.||..+. ||||+||..||++|...|
T Consensus 654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~A 733 (802)
T KOG0733|consen 654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILA 733 (802)
T ss_pred cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHH
Confidence 9999999999999 9999987 9999999999 668889999999999887 999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809 265 AREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG 341 (343)
Q Consensus 265 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~ 341 (343)
+++.+...... -.++.++ ...+.+|+.||++|+++++|++++.+.+.|++.++++|
T Consensus 734 L~~~~~~~~~~------------------~~~~~~~---~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 734 LRESLFEIDSS------------------EDDVTVR---SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHhhcccc------------------Cccccee---eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 99887511100 0011111 11456999999999999999999999999999999987
No 6
>KOG0736|consensus
Probab=100.00 E-value=1.4e-47 Score=367.38 Aligned_cols=274 Identities=34% Similarity=0.546 Sum_probs=248.0
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
-.+.|.+.|+||+|++++|..|.+.+..|+.+++++..++++-.|||||||||||||.+|+|+|.++...|+.|..+++.
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 45789999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
+.|+|+++++++++|++|+..+|||||+||+|.++++++ .++.-.++..+|+.+||+++... ...|.|||+||+|
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~-s~~VFViGATNRP 821 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS-SQDVFVIGATNRP 821 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC-CCceEEEecCCCc
Confidence 999999999999999999999999999999999998532 34566899999999999998753 5689999999999
Q ss_pred CCCCHHHhc--cccCcch---------HHHHHhhhhcCCCCCCcccHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 203 WDLDEALKR--RFEKRIS---------PIQIIGLCLGEIRKDPNVDVATLSKQL-IGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 203 ~~l~~~l~~--rf~~~i~---------r~~il~~~~~~~~~~~~~~~~~la~~t-~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
+.|||+++| ||++.++ +..+|+...+++.++.++|+.++|+.+ ..|||+|+..+|.+|+..|++|...
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999998 899999999999999999999999999 5799999999999999999999876
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG 341 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~ 341 (343)
...... ++....+...+.|+++||.+|+++++|+++..++..|+..+..|.
T Consensus 902 ~ie~g~--------------------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 902 DIESGT--------------------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred Hhhhcc--------------------ccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 221110 011123445778999999999999999999999999999999985
No 7
>KOG0733|consensus
Probab=100.00 E-value=7.5e-45 Score=341.17 Aligned_cols=290 Identities=31% Similarity=0.503 Sum_probs=242.1
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~ 128 (343)
...++|++|+|++.....|.+.+.. ..+|+.+... +.|++||||+||||||||+||+++|.+++.+|+.++..++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3467899999999999999999988 7888887764 8999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCC-CCCEEEEEecCCCCCC
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSG-DKGVLVLAATNHPWDL 205 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~-~~~v~vI~ttn~~~~l 205 (343)
+.|++++.++++|+.|..++|||+||||||.+.++. .+.+..+++..+|+..|+++..... ..+|+|||+||+|+.|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 999999999999999999999999999999999853 3456789999999999999876542 4589999999999999
Q ss_pred CHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccc-
Q psy7809 206 DEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGF- 274 (343)
Q Consensus 206 ~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~- 274 (343)
|++|+| ||++.|. |.+||+..++...+..++|+..||+.|.||.|+||..||..|...|++|+++...-
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 9999998 99999999999999999999999999999999999999999999999998863321
Q ss_pred -cCCC--CCC--CCC-CCCCCCC--------CCCC----------ccccCCCCCCcccccHHHHHHHHHhcCCC------
Q psy7809 275 -TGVN--SKP--PDG-RNNIGAK--------GDDS----------KCQVAPLGSDRIVLNRSHFERAKEKCRKS------ 324 (343)
Q Consensus 275 -~~~~--~~~--~~~-~~~~~~~--------~~~~----------~~~~~~~~~~~~~lt~~df~~Al~~~~p~------ 324 (343)
.... +.. .+. ...++.. .+.+ .-+++......+.|+.+||.+|+..++|+
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 1110 000 000 1111111 0000 00111234457789999999999999854
Q ss_pred -----CCHHHHHHHHHHHHHh
Q psy7809 325 -----VDGALIRKYKRWNELY 340 (343)
Q Consensus 325 -----~~~~~~~~~~~~~~~~ 340 (343)
++|+++-.+++++.++
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL 523 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLEL 523 (802)
T ss_pred eecCCCChhhcccHHHHHHHH
Confidence 8999999999988764
No 8
>KOG0737|consensus
Probab=100.00 E-value=5.2e-43 Score=313.60 Aligned_cols=286 Identities=41% Similarity=0.720 Sum_probs=243.6
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+.+....-.++|+||+|++.+++++.+.+..|+.+|++|.. +..++.|||||||||||||++|+++|++.+..|+.|.
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 33444555689999999999999999999999999999953 3789999999999999999999999999999999999
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
.+.+.++++|+.++.++.+|..|...+|+||||||+|.++.. ..+++....+.++|+...+++.+.. ..+|+|+|+|
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~-~~rVlVlgAT 238 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKD-SERVLVLGAT 238 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCC-CceEEEEeCC
Confidence 999999999999999999999999999999999999999873 5567888899999999999998876 5579999999
Q ss_pred CCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809 200 NHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN 271 (343)
Q Consensus 200 n~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~ 271 (343)
|+|.+||++++||++++++ |..|++..++...+.+++|+..+|++|+||||+||.++|..|.+..+++.+..
T Consensus 239 NRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 239 NRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred CCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999875
Q ss_pred c-cccCCCCCCCCCCCCCCCCCC--CCccccCCCCCCcccccHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCC
Q psy7809 272 A-GFTGVNSKPPDGRNNIGAKGD--DSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGA--LIRKYKRWNELYGS 342 (343)
Q Consensus 272 ~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~--~~~~~~~~~~~~~~ 342 (343)
. +...++....+ . .+.+ ...+..+| ++++||.+|...+-++++.+ .....+.|++.||.
T Consensus 319 ~~~~~d~d~~~~d----~-~~~~~~~~~~~~r~-------l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 319 ETGLLDLDKAIAD----L-KPTQAAASSCLLRP-------LEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred cccchhhhhhhhh----c-cCCcccccccccCc-------ccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 3 11111000000 0 0001 12333556 99999999999777664333 56788999999874
No 9
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.6e-40 Score=334.75 Aligned_cols=276 Identities=37% Similarity=0.599 Sum_probs=238.9
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
..+...|..+|++++|++.+++.|.+.+.+++.+++++... ..++.++|||||||||||++|+++|++++.+|+.++++
T Consensus 442 ~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 442 EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 34455678899999999999999999999999999988764 68889999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC---chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
++.++|+|+++..++.+|..|+...|+||||||+|.+++... ......++.++|+..|+++... .+++||+|||
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~---~~v~vI~aTn 598 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL---SNVVVIAATN 598 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC---CCEEEEEeCC
Confidence 999999999999999999999999999999999999987432 2345678999999999987553 3899999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
+|+.||++++| ||+..++ |.+||+.+.....+..+++++.||+.|+||||+||..+|++|...|+++...
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 9999887 9999999999888888999999999999999999999999999999998765
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS 342 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~~ 342 (343)
......... .. ........|+.+||.+|+++++|+++.++++.|++|.+.||.
T Consensus 679 ~~~~~~~~~------------~~-------~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 679 SPAKEKLEV------------GE-------EEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hccchhhhc------------cc-------ccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 211000000 00 000112359999999999999999999999999999999984
No 10
>KOG0740|consensus
Probab=100.00 E-value=1.6e-40 Score=307.65 Aligned_cols=287 Identities=45% Similarity=0.735 Sum_probs=255.9
Q ss_pred CCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHH
Q psy7809 32 RRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
..++....+.+.+++....+.+.|+|+.|++.+++.+.+.+++|..++.+|.++-.+++++||.||||+|||+|++++|.
T Consensus 129 ~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 129 KEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred ccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHh
Confidence 34455677788888999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSG 189 (343)
Q Consensus 112 ~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~ 189 (343)
+.+..|+.++++.+.++|+|+.++.++.+|..|+..+|+|+||||+|.++.. ..+++...++..+++-.+++.....
T Consensus 209 E~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~- 287 (428)
T KOG0740|consen 209 ESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP- 287 (428)
T ss_pred hhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC-
Confidence 9999999999999999999999999999999999999999999999999974 5566778899999999998877765
Q ss_pred CCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCC-CCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 190 DKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEI-RKDPNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 190 ~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~-~~~~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
..+|+|||+||.||.+|.+++|||.++++ |..+|..++... ....+.+++.||+.|+||+++||.++|..|
T Consensus 288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 56999999999999999999999999998 999999999887 556778999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q psy7809 261 ILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELY 340 (343)
Q Consensus 261 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~ 340 (343)
.+...+....... +... .....++ ++..||..|++..+|+++...++.|.+|+..|
T Consensus 368 ~~~p~r~~~~~~~---~~~~--------------~~~~~r~-------i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~f 423 (428)
T KOG0740|consen 368 AMGPLRELGGTTD---LEFI--------------DADKIRP-------ITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEF 423 (428)
T ss_pred hcCchhhcccchh---hhhc--------------chhccCC-------CCcchHHHHHHhhccccCccccchhHHHhhhh
Confidence 9998877654100 0000 1113455 99999999999999999999999999999999
Q ss_pred CCC
Q psy7809 341 GSR 343 (343)
Q Consensus 341 ~~~ 343 (343)
|+.
T Consensus 424 g~~ 426 (428)
T KOG0740|consen 424 GSS 426 (428)
T ss_pred ccc
Confidence 973
No 11
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=276.98 Aligned_cols=234 Identities=30% Similarity=0.485 Sum_probs=205.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH 129 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~ 129 (343)
.+.++|+|++|+++.|+..+-.+ ..+..|+.|..| .|++||||||||||||++|+++|++...+++.+...++.+.+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~-~yLenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIM-EYLENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHH-HHhhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 34588999999999999876544 345677888877 578999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc---hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809 130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE---HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206 (343)
Q Consensus 130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~ 206 (343)
+|+....++.+|..|...+|||+||||+|.++-...- .+....+.|+|+..|+++..+. +|+.|++||+|+.||
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene---GVvtIaaTN~p~~LD 268 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE---GVVTIAATNRPELLD 268 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC---ceEEEeecCChhhcC
Confidence 9999999999999999999999999999999753221 1234689999999999998654 999999999999999
Q ss_pred HHHhccccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH-HHHHHHHHHHHHHHHhccccCC
Q psy7809 207 EALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD-LCQEIILIAAREVIQNAGFTGV 277 (343)
Q Consensus 207 ~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~-l~~~A~~~a~~r~~~~~~~~~~ 277 (343)
+++++||...|. |..|++.+.+.+.+.-+.++..++..|.|+||+||.. ++..|++.|+.+-..
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e------- 341 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE------- 341 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh-------
Confidence 999999999997 9999999999999888999999999999999999974 888889988876543
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCC
Q psy7809 278 NSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVD 326 (343)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~ 326 (343)
. |+.+|++.|+++-++...
T Consensus 342 -----------------------~-------v~~edie~al~k~r~~r~ 360 (368)
T COG1223 342 -----------------------K-------VEREDIEKALKKERKRRA 360 (368)
T ss_pred -----------------------h-------hhHHHHHHHHHhhccccC
Confidence 1 999999999998776644
No 12
>KOG0734|consensus
Probab=100.00 E-value=2.9e-39 Score=299.43 Aligned_cols=229 Identities=37% Similarity=0.593 Sum_probs=208.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY 130 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~ 130 (343)
.++|+|+.|.++.|+.|++++.. +..|.-|..+ .+-|+||||.||||||||+|||++|.+.+.+|++...+++-..++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 57899999999999999998864 4566666643 578899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch--hhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809 131 GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH--EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA 208 (343)
Q Consensus 131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~ 208 (343)
|...+.++.+|..|+.++||||||||||.+.++.... .+.++.+++|+..||++..+. +|+||++||.|+.||++
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe---GiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE---GIIVIGATNFPEALDKA 455 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC---ceEEEeccCChhhhhHH
Confidence 9999999999999999999999999999999864433 367899999999999998765 99999999999999999
Q ss_pred Hhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy7809 209 LKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVN 278 (343)
Q Consensus 209 l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~ 278 (343)
|.| ||+..+. |.+||..++..+....++|...||+-|.||+|+||.++++.|...|..+...
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~-------- 527 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE-------- 527 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc--------
Confidence 999 9999997 9999999999999999999999999999999999999999999998876543
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhc
Q psy7809 279 SKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321 (343)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 321 (343)
. ||++||+.|-.++
T Consensus 528 ----------------------~-------VtM~~LE~akDrI 541 (752)
T KOG0734|consen 528 ----------------------M-------VTMKHLEFAKDRI 541 (752)
T ss_pred ----------------------c-------ccHHHHhhhhhhe
Confidence 2 8889999988877
No 13
>KOG0728|consensus
Probab=100.00 E-value=3.1e-38 Score=268.68 Aligned_cols=251 Identities=33% Similarity=0.550 Sum_probs=224.1
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+++.|..+++-++|++.+++.+++.+..|..+|++|..+ +..|.|+|||||||+|||.||+++|....+.|+.++.++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 4778889999999999999999999999999999999976 789999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
+..+|.|+....++++|-.|+.++|+|||+||||++.... +......+.+-.|+++++++... .++-||.+|
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat---knikvimat 293 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT---KNIKVIMAT 293 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc---cceEEEEec
Confidence 9999999999999999999999999999999999998631 12223345566677777877654 489999999
Q ss_pred CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
|+.+-||++++| |+++.|. |.+|++++.+.+.+...+++..+|+...|.||+++..+|.+|.++|+++..
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr 373 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR 373 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh
Confidence 999999999999 9999987 999999999999999999999999999999999999999999999998653
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~ 336 (343)
+++|++||+-|..++...-++.++.--+-|
T Consensus 374 -------------------------------------vhvtqedfemav~kvm~k~~e~nms~~kl~ 403 (404)
T KOG0728|consen 374 -------------------------------------VHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 403 (404)
T ss_pred -------------------------------------ccccHHHHHHHHHHHHhccccccchHHHhh
Confidence 249999999999998777666666555555
No 14
>KOG0727|consensus
Probab=100.00 E-value=2.8e-38 Score=269.24 Aligned_cols=237 Identities=38% Similarity=0.592 Sum_probs=213.4
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
...|.+++.|++|++-+|+.+++.+..|+.+..++.+. +.||+|+|+|||||||||+||+++|+.....|+.+..+++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45678999999999999999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC-----CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-----~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
.+|.|+...+++.+|+.|+.++|+||||||+|.++.+ .+......+++-.|++.|+++.... ++-||.+||+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~---nvkvimatnr 303 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT---NVKVIMATNR 303 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc---ceEEEEecCc
Confidence 9999999999999999999999999999999999873 2223344678888888999886644 8999999999
Q ss_pred CCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809 202 PWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN 271 (343)
Q Consensus 202 ~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~ 271 (343)
.+.|||+++| |+++.|. +.-++.....++.+..++|++.+..+-+..|++||..+|++|.+.|+++..-
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry- 382 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY- 382 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce-
Confidence 9999999999 9998887 5567777888889999999999999999999999999999999999987532
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 272 AGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
+|...||++|++.....
T Consensus 383 ------------------------------------vvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 383 ------------------------------------VVLQKDFEKAYKTVVKK 399 (408)
T ss_pred ------------------------------------eeeHHHHHHHHHhhcCC
Confidence 38899999999988655
No 15
>KOG0652|consensus
Probab=100.00 E-value=8.9e-38 Score=267.33 Aligned_cols=245 Identities=32% Similarity=0.525 Sum_probs=218.0
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
+...+..-.+...|..+++||+|++.+++.|.+.+..|+.+++.|..+ +.||.|+|+|||||||||.+||++|...+..
T Consensus 153 yDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 153 YDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred hhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 333344445688899999999999999999999999999999998875 8999999999999999999999999999999
Q ss_pred eEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchh-----hhHHHHHHHhhhcccCCCCCCCC
Q psy7809 117 FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHE-----ATRRVRCELLSHMDGVGTGSGDK 191 (343)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-----~~~~~~~~ll~~l~~~~~~~~~~ 191 (343)
|..+-.+.+...+.|...+.++..|..|+..+|+||||||+|.+..+...++ ...+.+-.|+++++++.+..
T Consensus 233 FLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~--- 309 (424)
T KOG0652|consen 233 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD--- 309 (424)
T ss_pred HHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc---
Confidence 9999999999999999999999999999999999999999999987533222 23455566777778876644
Q ss_pred CEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 192 GVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 192 ~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
.+-||++||+.+-|||+++| |+++.|. |..|++++.+++....++++++||+.|++|+|+....+|-+|.
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhh
Confidence 89999999999999999998 9999887 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 262 ~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
+.|+||... . |+.+||.+++..++
T Consensus 390 MiALRr~at------------------------------e-------v~heDfmegI~eVq 413 (424)
T KOG0652|consen 390 MIALRRGAT------------------------------E-------VTHEDFMEGILEVQ 413 (424)
T ss_pred HHHHhcccc------------------------------c-------ccHHHHHHHHHHHH
Confidence 999998654 2 99999999988764
No 16
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=291.14 Aligned_cols=238 Identities=37% Similarity=0.567 Sum_probs=211.6
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
+...|..+|+||+|++.+++.|.+.+..|+.++.++... +.+++++|||||||||||++|+++|++++.+++.+.+.++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 557889999999999999999999999999999998864 6889999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
...+.+.....++.+|..+....|+||||||+|.++.... ......+++..|+..++++... .+++||++||
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~---~~v~VI~aTN 292 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT---TNVKVIMATN 292 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC---CCEEEEEecC
Confidence 9999999999999999999999999999999999986321 1123446777888888876543 3799999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
+++.+|++++| ||+..|. |..||+.++....+..+++++.+|..|+||||+||.++|++|.+.|+++...
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~ 372 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRY 372 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999998 9998887 9999999999988889999999999999999999999999999999977421
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
.|+.+||.+|++.+...
T Consensus 373 -------------------------------------~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 373 -------------------------------------VILPKDFEKGYKTVVRK 389 (398)
T ss_pred -------------------------------------ccCHHHHHHHHHHHHhc
Confidence 29999999999998655
No 17
>KOG0726|consensus
Probab=100.00 E-value=7.8e-38 Score=271.27 Aligned_cols=238 Identities=37% Similarity=0.564 Sum_probs=212.7
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
--+++.|..+|.|++|++.+++.+.+.+..|+.+|+++... +.||.||+|||+||||||.||+++|+.....|+.+..+
T Consensus 174 mK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGs 253 (440)
T KOG0726|consen 174 MKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGS 253 (440)
T ss_pred eecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhH
Confidence 34678899999999999999999999999999999999865 89999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhh---HHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEAT---RRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~---~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
++..+|.|+..+.++.+|+.|..++|+|+||||||++..+ ...+... .+.+-.|+++++++.+. ..|-||.+
T Consensus 254 eLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr---gDvKvimA 330 (440)
T KOG0726|consen 254 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR---GDVKVIMA 330 (440)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc---CCeEEEEe
Confidence 9999999999999999999999999999999999999873 1222222 34444666677777554 47999999
Q ss_pred cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
||+.+.|||+++| |+++.|. +..|+.++..++.+..+++++.+...-+.+||+||.++|.+|.+.|+|+.
T Consensus 331 Tnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 331 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 9999999999999 9999887 89999999999999999999999999999999999999999999999976
Q ss_pred HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
.. .++.+||.+|.+++-
T Consensus 411 Rm-------------------------------------~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 RM-------------------------------------KVTMEDFKKAKEKVL 427 (440)
T ss_pred Hh-------------------------------------hccHHHHHHHHHHHH
Confidence 54 199999999998763
No 18
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.2e-37 Score=293.10 Aligned_cols=245 Identities=27% Similarity=0.315 Sum_probs=210.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY 130 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~ 130 (343)
+..+|++|+|++.+|+.+.+...... ......++..++|+|||||||||||++|+++|++++.+++.+++..+.+.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 46789999999999999987543221 1222334678899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCCcEEEEcccccccCC---CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH
Q psy7809 131 GESEKLVRALFETARARAPAVIFIDEVDAFCSG---SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE 207 (343)
Q Consensus 131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~---~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~ 207 (343)
|+++..++.+|..+...+||||||||||.++.. ....+...++++.|+..|+.. ..+++||+|||+++.||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----KSPVFVVATANNIDLLPL 375 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----CCceEEEEecCChhhCCH
Confidence 999999999999999999999999999998863 223456678899999988743 347999999999999999
Q ss_pred HHhc--cccCcch--------HHHHHhhhhcCCCC--CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy7809 208 ALKR--RFEKRIS--------PIQIIGLCLGEIRK--DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFT 275 (343)
Q Consensus 208 ~l~~--rf~~~i~--------r~~il~~~~~~~~~--~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~ 275 (343)
+++| ||+..++ |.+||+.++.+... ..+.+++.||..|+||||+||.++|..|...|+.+.
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~------- 448 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK------- 448 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9998 9998887 99999999988643 357899999999999999999999999998887432
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHh
Q psy7809 276 GVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS--VDGALIRKYKRWNELY 340 (343)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~--~~~~~~~~~~~~~~~~ 340 (343)
++ ++.+||..|++.++|. ...+.++.+++|...-
T Consensus 449 ------------------------~~-------lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 449 ------------------------RE-------FTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ------------------------CC-------cCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 13 8999999999999997 4788999999998753
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-37 Score=299.32 Aligned_cols=247 Identities=45% Similarity=0.685 Sum_probs=225.3
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
.+....+..+|.+++|++.+++.+.+.+.+++.+++.+.. +..++.++|||||||||||++|+++|.+++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 5667888999999999999999999999999999998876 568888999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch--hhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH--EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
++.++|+|++++.++.+|..|...+||||||||+|.++...... ....++.++++.+++++.... +|+||++||.
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~---~v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE---GVLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC---ceEEEecCCC
Confidence 99999999999999999999999999999999999999864432 333689999999999887654 7999999999
Q ss_pred CCCCCHHHhc--cccCcch--------HHHHHhhhhcCCC--CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 202 PWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIR--KDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 202 ~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~--~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
|+.+|++++| ||+..++ |.+|++.++.... +..++++..+++.|+||+++||..+|++|.+.++++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999998 9999999999653 46789999999999999999999999999999998874
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~ 336 (343)
. .+ ||.+||..|++..+|+++ |++|
T Consensus 468 ~-----------------------------~~-------~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 468 R-----------------------------RE-------VTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred c-----------------------------CC-------ccHHHHHHHHHhcCCCCC------hhhc
Confidence 1 12 999999999999999988 8888
No 20
>KOG0735|consensus
Probab=100.00 E-value=1.4e-36 Score=289.52 Aligned_cols=222 Identities=38% Similarity=0.623 Sum_probs=206.8
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
+....+|+|++|+.++++.|.+.+.+|...|.+|... ++...|+|||||||||||+||.++|..++..|+.+..+++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 3444899999999999999999999999999999976 677889999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809 128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l 205 (343)
+|.|.++..++.+|..|...+|||||+||+|.++++++ ..+...++.++|+.+|++..... +|.|+++|.+|+.+
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~---GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD---GVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc---eEEEEEecCCcccc
Confidence 99999999999999999999999999999999998533 45678999999999999987644 89999999999999
Q ss_pred CHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809 206 DEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273 (343)
Q Consensus 206 ~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~ 273 (343)
||+++| |+++.+. |.+|++.+........++|++.+|..|+||||+||..++.+|...|+.+...+.+
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 9999887 9999999999888899999999999999999999999999999999999987544
No 21
>KOG0729|consensus
Probab=100.00 E-value=2.3e-36 Score=259.36 Aligned_cols=236 Identities=33% Similarity=0.556 Sum_probs=210.5
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
++..|.+++.|++|..++++.|++.+..|+.+|+.|-.+ +.||.|+|+|||||||||.+||++|++.+.-|+.+-.+++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 677889999999999999999999999999999988765 8999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
..+|+|+...+++++|..|+....||||+||||.+.+..- ......+.+-.|+.+++++.. ..++-|+.+||
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp---rgnikvlmatn 324 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP---RGNIKVLMATN 324 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC---CCCeEEEeecC
Confidence 9999999999999999999999999999999999987321 112223445556666676654 45899999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
+|+.|||+++| |+++.+. |..|++++.+.+.+..++-++.||+.+...+|++|+.+|.+|.+.|++....
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 99999999999 9988887 9999999999999999999999999999999999999999999999986544
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
+.|..||.+|+.++.
T Consensus 405 -------------------------------------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 405 -------------------------------------VATEKDFLDAVNKVV 419 (435)
T ss_pred -------------------------------------hhhHHHHHHHHHHHH
Confidence 288899999999873
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.1e-36 Score=282.53 Aligned_cols=244 Identities=37% Similarity=0.591 Sum_probs=212.0
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
...+...|...|++|+|++++++.+.+.+..++.++.++... +.++.++|||||||||||++|+++|++++.+|+.+++
T Consensus 119 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 119 AMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred eeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 334567788999999999999999999999999999988764 6889999999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809 123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLA 197 (343)
Q Consensus 123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ 197 (343)
.++...+.|.....++.+|..+....|+||||||+|.++..... .....+.+..++..++++.. ..++.||+
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~---~~~v~VI~ 275 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP---RGNVKIIA 275 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC---CCCEEEEE
Confidence 99999999999999999999999999999999999999863221 12233455667777776544 33799999
Q ss_pred ecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809 198 ATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267 (343)
Q Consensus 198 ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r 267 (343)
|||.++.+|+++++ ||+..+. |.+||+.++....+..++++..+|..|+||+++||..+|++|.+.|+++
T Consensus 276 aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 276 ATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred ecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999998 9998886 9999999999888888899999999999999999999999999999876
Q ss_pred HHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCH
Q psy7809 268 VIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDG 327 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~ 327 (343)
... . |+.+||.+|++.++++...
T Consensus 356 ~~~------------------------------~-------i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 356 DRT------------------------------E-------VTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred CCC------------------------------C-------cCHHHHHHHHHHHhccccc
Confidence 321 2 9999999999999887543
No 23
>KOG0731|consensus
Probab=100.00 E-value=5.3e-36 Score=293.02 Aligned_cols=234 Identities=39% Similarity=0.621 Sum_probs=210.6
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
.....+.|+|+.|.+++|+.|.+++.. +.+|+.+..+ ...|+|+||+||||||||.||+|+|.+.+.||+.++.+++.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 445569999999999999999998864 5777777754 79999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC------CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS------REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~------~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
..+++.....++.+|..++.++|||+||||||.+.... ..+......+++|+..||++... ..|+|+++||
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~---~~vi~~a~tn 458 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS---KGVIVLAATN 458 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC---CcEEEEeccC
Confidence 99998888999999999999999999999999998743 23445668899999999999765 3899999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
+++.||++++| ||++.|. |..|++.|++..... +++++..||.+|.||+|+||.++|.+|...|.|+..
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 99999999999 9999998 999999999999774 889999999999999999999999999999998865
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
. . |+..||+.|++.+.
T Consensus 539 ~------------------------------~-------i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 539 R------------------------------E-------IGTKDLEYAIERVI 554 (774)
T ss_pred C------------------------------c-------cchhhHHHHHHHHh
Confidence 4 2 89999999999554
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=278.51 Aligned_cols=237 Identities=38% Similarity=0.585 Sum_probs=208.8
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
-+.+.|..+|+||+|++.+++.+.+.+..++.++.++... +.++.++|||||||||||++|+++|++++.+|+.+..++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 3677888999999999999999999999999999988864 688899999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
+...+.+.....++.+|..+....|+||||||+|.++.... ......+.+..++..++++... .++.||++|
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~---~~V~VI~AT 329 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR---GDVKVIMAT 329 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc---CCeEEEEec
Confidence 99999999999999999999999999999999999986321 1122345566777777776443 378999999
Q ss_pred CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
|+++.+|++++| ||+..|. |.+||+.++....+..+++++.++..++|||++||.++|..|...|+++..
T Consensus 330 Nr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r 409 (438)
T PTZ00361 330 NRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR 409 (438)
T ss_pred CChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999987 9998887 999999999998888899999999999999999999999999999998753
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
. .|+.+||.+|++++.
T Consensus 410 ~-------------------------------------~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 410 M-------------------------------------KVTQADFRKAKEKVL 425 (438)
T ss_pred C-------------------------------------ccCHHHHHHHHHHHH
Confidence 2 299999999999974
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6.7e-34 Score=277.81 Aligned_cols=236 Identities=36% Similarity=0.566 Sum_probs=203.3
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
....+..+|+|++|++++++.+.+.+.. +.++..+.. +...++++||+||||||||++|+++|.+++.+++.+++.++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3446789999999999999999988775 556665553 36788999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
...+.+...+.++.+|..+....|+||||||+|.++.... ......+.++.|+..|+++... .+++||+|||
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~---~~v~vI~aTn 201 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN---TGVIVIAATN 201 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC---CCeEEEEecC
Confidence 9888888889999999999999999999999999986422 1334457888999999887553 3799999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
.++.||++++| ||+..+. |.+|++.++.......++++..+|..|.|||++||.++|++|...|.++...
T Consensus 202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999998 9998887 9999999998887777899999999999999999999999998877654211
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK 323 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 323 (343)
+ |+.+||..|+.....
T Consensus 282 ------------------------------~-------i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 282 ------------------------------E-------ITMNDIEEAIDRVIA 297 (495)
T ss_pred ------------------------------C-------CCHHHHHHHHHHHhc
Confidence 2 999999999998753
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-34 Score=275.50 Aligned_cols=232 Identities=36% Similarity=0.549 Sum_probs=208.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHh-ccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK-GILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~ 128 (343)
...+.|.|+.|.++.|+.+.+.+... ..|.-+. -+..-|+|++|+||||||||.||+++|.+.+.||+.++.+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfL-k~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFL-KNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHH-hCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 56789999999999999999988754 4444443 345888999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
++|-....++.+|..|+.++|||+||||+|.+...+ ..+....+.+++|+..||++..+ ..|++|++||+|+
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~---~gviviaaTNRpd 299 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN---EGVIVIAATNRPD 299 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC---CceEEEecCCCcc
Confidence 999999999999999999999999999999998643 34455567999999999999854 4899999999999
Q ss_pred CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809 204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273 (343)
Q Consensus 204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~ 273 (343)
-||++++| ||++.+. |++|++.+++...+..++++..+|+.|.||+++|+.+++.+|...|.++...
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~--- 376 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK--- 376 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe---
Confidence 99999999 9999997 9999999999999999999999999999999999999999999999998654
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
. +++.||++|..++-
T Consensus 377 ---------------------------~-------i~~~~i~ea~drv~ 391 (596)
T COG0465 377 ---------------------------E-------ITMRDIEEAIDRVI 391 (596)
T ss_pred ---------------------------e-------EeccchHHHHHHHh
Confidence 2 88999999999873
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=5.8e-33 Score=261.55 Aligned_cols=235 Identities=39% Similarity=0.652 Sum_probs=202.7
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
+...|...|++|+|++++++.+.+.+..++.++..+... ..++.++||+||||||||++|+++|++++.+++.+.+.++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 456788999999999999999999999999999888754 6888999999999999999999999999999999999888
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
...+.+.....+..+|..+....|+||||||+|.+...... .....+.+..++..++++.. ..++.||+|||
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~---~~~v~vI~ttn 269 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP---RGNVKVIAATN 269 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC---CCCEEEEEecC
Confidence 88888888888999999999999999999999999753211 12223455666766766543 23799999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
.++.+|+++++ ||+..+. |.+|++.++.......+++++.+|..|+||+++||..+|..|.+.|+++...
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~ 349 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERD 349 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999998 8888775 9999999998887777899999999999999999999999999999876321
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhc
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 321 (343)
.|+.+||.+|++++
T Consensus 350 -------------------------------------~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 350 -------------------------------------YVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------------------------ccCHHHHHHHHHHh
Confidence 29999999999875
No 28
>KOG0741|consensus
Probab=100.00 E-value=2e-33 Score=260.50 Aligned_cols=260 Identities=28% Similarity=0.484 Sum_probs=212.9
Q ss_pred CCCCCCCc--ccccHH-HHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCC-ceEEEcCCc
Q psy7809 50 DTGVGWDD--IAGLDN-VKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGS-TFFNVLPSS 124 (343)
Q Consensus 50 ~~~~~~~~--l~G~~~-~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~v~~~~ 124 (343)
.|...|++ |+|++. .-...++.+.....-|....++ +...+|+|||||||||||.+||.|.+.++. +-..|+.++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 34455665 678874 4444566666666667776665 678899999999999999999999999974 567889999
Q ss_pred cccccccchHHHHHHHHHHHHHcC--------CcEEEEcccccccCC----CCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 125 LTSKHYGESEKLVRALFETARARA--------PAVIFIDEVDAFCSG----SREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~--------p~il~iDeid~l~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
+.++|+|+++.+++.+|..|.... -.||++||||++|.. ....+....+.++|+..||+...-+ +
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN---N 369 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN---N 369 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh---c
Confidence 999999999999999999885422 139999999999973 3345677899999999999987755 9
Q ss_pred EEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCC----CCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809 193 VLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEI----RKDPNVDVATLSKQLIGYSGSDIRDLCQ 258 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~----~~~~~~~~~~la~~t~g~s~~di~~l~~ 258 (343)
++||+.||+.+.+|++|+| ||+..+. |.+|++++.+++ .+..++|+.+||.+|..|||++|.-+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 9999999999999999999 8877665 999999999886 4568999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC--CCHHHHHHHH
Q psy7809 259 EIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS--VDGALIRKYK 334 (343)
Q Consensus 259 ~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~--~~~~~~~~~~ 334 (343)
.|...|+.|+.+.... ...-+.....+.|+++||..|+..++|. ++++++..|.
T Consensus 450 sA~S~A~nR~vk~~~~----------------------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK----------------------VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHHHhhhccCcc----------------------eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999999999862211 1122345556779999999999999998 4777777664
No 29
>KOG0651|consensus
Probab=100.00 E-value=3.5e-33 Score=244.31 Aligned_cols=239 Identities=31% Similarity=0.529 Sum_probs=209.8
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
.+.....+|+.+.|.-.+...+++.+..|+..|.++.. ++.+|.+++||||||+|||.+|+++|..++.+|+.+..+.+
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 34445679999999999999999999999999999997 58999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
.+++.|++.+.+++.|..|....|||||+||||++.+. .........+..+|++.+++........+|-+|.|||+|+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 99999999999999999999999999999999999873 2223344556666666655554444455899999999999
Q ss_pred CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809 204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273 (343)
Q Consensus 204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~ 273 (343)
.|+|+|+| |+++.++ |..|++++...+.....++.+.+.+.++||.+.|+++.|++|-+.|++....
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~--- 359 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD--- 359 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH---
Confidence 99999999 9888887 9999999999988889999999999999999999999999999998876543
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
.+-.|||.+|+.+..
T Consensus 360 ----------------------------------~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 360 ----------------------------------EVLHEDFMKLVRKQA 374 (388)
T ss_pred ----------------------------------HHhHHHHHHHHHHHH
Confidence 277899999998763
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.4e-32 Score=267.28 Aligned_cols=230 Identities=33% Similarity=0.574 Sum_probs=197.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH 129 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~ 129 (343)
+..+|+|++|++++++.+.+.+.. +..+..+.. +...+.++||+||||||||++|+++|.+++.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457899999999999999998765 455555443 357788999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809 130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204 (343)
Q Consensus 130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~ 204 (343)
.+.....++.+|..+....||||||||+|.++... ..+......++.|+..++++... .+++||++||+++.
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~---~~ViVIaaTN~~~~ 333 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN---KGVIVIAATNRVDI 333 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC---CCeeEEEecCchHh
Confidence 88777889999999999999999999999997532 22344557888999999887553 38999999999999
Q ss_pred CCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccc
Q psy7809 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGF 274 (343)
Q Consensus 205 l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~ 274 (343)
+|++++| ||+..+. |.+||+.++.......++++..+|..|.||+++||.++|++|...|.++...
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~---- 409 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKA---- 409 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC----
Confidence 9999998 8998886 9999999999887778899999999999999999999999998888765321
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhc
Q psy7809 275 TGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321 (343)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~ 321 (343)
. |+.+||+.|+..+
T Consensus 410 --------------------------~-------It~~dl~~Ai~rv 423 (638)
T CHL00176 410 --------------------------T-------ITMKEIDTAIDRV 423 (638)
T ss_pred --------------------------C-------cCHHHHHHHHHHH
Confidence 2 9999999999987
No 31
>KOG0730|consensus
Probab=100.00 E-value=5.8e-32 Score=257.65 Aligned_cols=214 Identities=40% Similarity=0.676 Sum_probs=198.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH 129 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~ 129 (343)
+..+ .+++|.......+++.+..++.++.++... .++|+++|+|||||+|||.+++++|++.+.+++.++++++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 799999999999999999999999998754 79999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchh-hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH
Q psy7809 130 YGESEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHE-ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE 207 (343)
Q Consensus 130 ~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~ 207 (343)
.|++++.++..|..|..++ |+++||||+|.++++..... ...++..+++..+++.... .+++||++||+|..||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~---~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPD---AKVIVLAATNRPDSLDP 335 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCc---CcEEEEEecCCccccCh
Confidence 9999999999999999999 99999999999998644433 4889999999999998753 48999999999999999
Q ss_pred HHhc-cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 208 ALKR-RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 208 ~l~~-rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
+++| ||++.+. |.+|++.+++.+...+++++..+|..|.||+|+||..+|..|...+.++.
T Consensus 336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~ 405 (693)
T KOG0730|consen 336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRT 405 (693)
T ss_pred hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhh
Confidence 9998 9999987 99999999999988888999999999999999999999999999999883
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.98 E-value=5.3e-31 Score=252.99 Aligned_cols=244 Identities=31% Similarity=0.482 Sum_probs=198.5
Q ss_pred hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCc----
Q psy7809 42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGST---- 116 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---- 116 (343)
+..-++.+.|..+|++|+|++.+++.+.+.+..++.++.++... +.+++++|||||||||||++|+++|++++.+
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 44456788899999999999999999999999999999998854 7889999999999999999999999998654
Q ss_pred ------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCC---chhhhHHHHHHHhhhccc
Q psy7809 117 ------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDG 183 (343)
Q Consensus 117 ------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~---~~~~~~~~~~~ll~~l~~ 183 (343)
|+.+...++..++.++.+..++.+|..+... .|+||||||+|.++.... .++....++++|+..|++
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 5567778888999999999999999988764 699999999999987432 234456788999999998
Q ss_pred CCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCC-CCC---------CcccHHHHHH
Q psy7809 184 VGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEI-RKD---------PNVDVATLSK 243 (343)
Q Consensus 184 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~-~~~---------~~~~~~~la~ 243 (343)
+... .+++||+|||+++.||++++| ||+..|. |.+||+.++... ... ...++..+++
T Consensus 328 l~~~---~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 328 VESL---DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred cccC---CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHH
Confidence 8653 379999999999999999999 9999887 999999988653 221 1223333333
Q ss_pred H-----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCC
Q psy7809 244 Q-----------------------------LIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDD 294 (343)
Q Consensus 244 ~-----------------------------t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (343)
. ++.+||++|.++|.+|...|+.+.....
T Consensus 405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------------- 462 (512)
T TIGR03689 405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------------- 462 (512)
T ss_pred HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC----------------------
Confidence 3 4567899999999999999998877410
Q ss_pred CccccCCCCCCcccccHHHHHHHHHhc
Q psy7809 295 SKCQVAPLGSDRIVLNRSHFERAKEKC 321 (343)
Q Consensus 295 ~~~~~~~~~~~~~~lt~~df~~Al~~~ 321 (343)
.+ .|+.+|+..|+..-
T Consensus 463 ----~~-------~~~~~~l~~a~~~e 478 (512)
T TIGR03689 463 ----QV-------GLRIEHLLAAVLDE 478 (512)
T ss_pred ----Cc-------CcCHHHHHHHHHHh
Confidence 01 28999999999765
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.5e-30 Score=262.47 Aligned_cols=255 Identities=35% Similarity=0.575 Sum_probs=214.6
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~ 128 (343)
.+..+|+||+|++.+++.+.+.+..++.+++++..+ +.++.++|||||||||||++++++|++++.+++.+++.++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 467899999999999999999999999999988765 6888999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~ 206 (343)
+.+.....++.+|..+....|+||||||+|.++.... ......++.+.|+..++++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~---~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR---GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC---CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987432 2344567889999999887543 3799999999999999
Q ss_pred HHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy7809 207 EALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276 (343)
Q Consensus 207 ~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~ 276 (343)
+++++ ||+..+. |.+||+.+.....+..+.+++.+++.+.||+++||..+|+.|...++++........
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~- 407 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN- 407 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc-
Confidence 99998 8988776 999999998888777889999999999999999999999999999999876411100
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCC
Q psy7809 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV 325 (343)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 325 (343)
. ....+ ...-.....++.+||..|++.++|+.
T Consensus 408 -----~----------~~~~i--~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 408 -----F----------EAEEI--PAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred -----c----------ccccc--cchhcccccccHHHHHHHHhhccccc
Confidence 0 00000 00011233589999999999998774
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=4.6e-30 Score=256.59 Aligned_cols=234 Identities=35% Similarity=0.546 Sum_probs=200.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHh-ccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK-GILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~ 128 (343)
.....|+++.|.+..++.+.+.+... ..+..+. .....+.+++|+||||||||++++++|.+++.+|+.+++.++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 34577899999999999999988764 3333333 234667899999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
+.+.....++.+|..+....|+||||||+|.++.... ......+.++.|+..|+++.... +++||++||.|+
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~---~vivIaaTN~p~ 301 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE---GIIVIAATNRPD 301 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC---CeeEEEecCChh
Confidence 8888888999999999999999999999999976322 23345678899999999886543 899999999999
Q ss_pred CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809 204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273 (343)
Q Consensus 204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~ 273 (343)
.||++++| ||++.+. |.+||+.++....+..++++..+|+.|.|||++||.++|++|...|.++...
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~--- 378 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR--- 378 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCC---
Confidence 99999998 9998887 9999999999988888999999999999999999999999999998865321
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
.|+.+||++|+..+.+.
T Consensus 379 ----------------------------------~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 379 ----------------------------------VVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ----------------------------------cccHHHHHHHHHHHhcc
Confidence 29999999999877543
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=3.5e-30 Score=268.41 Aligned_cols=197 Identities=19% Similarity=0.286 Sum_probs=160.6
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc----------cc-----------------------
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH----------YG----------------------- 131 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~----------~~----------------------- 131 (343)
+..+|+||||+||||||||+||+++|.+++.||+.++++++...+ +|
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 468899999999999999999999999999999999999888543 11
Q ss_pred --------ch--HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 132 --------ES--EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 132 --------~~--~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
.. ...++.+|+.|+.++||||+|||||.++... .....++.|+..|++........+|+|||+||+
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----SNYLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----cceehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence 11 1237889999999999999999999997641 112347888899987654333558999999999
Q ss_pred CCCCCHHHhc--cccCcch--------HHHHHhhhh--cCCCCCC-cccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 202 PWDLDEALKR--RFEKRIS--------PIQIIGLCL--GEIRKDP-NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 202 ~~~l~~~l~~--rf~~~i~--------r~~il~~~~--~~~~~~~-~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
|+.|||+++| ||++.|. |.+++..++ +...... .++++.+|+.|.||||+||.++|++|+..|+++.
T Consensus 1782 PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1782 PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999 9999886 777777543 3444443 3689999999999999999999999999999875
Q ss_pred HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
.. .|+.+||..|+....
T Consensus 1862 ks-------------------------------------~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1862 KS-------------------------------------IIDTNTIRSALHRQT 1878 (2281)
T ss_pred CC-------------------------------------ccCHHHHHHHHHHHH
Confidence 32 288899999998764
No 36
>KOG0732|consensus
Probab=99.96 E-value=9.2e-29 Score=248.22 Aligned_cols=254 Identities=33% Similarity=0.573 Sum_probs=212.0
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL 121 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~ 121 (343)
.....++|++++|++.+++.|++.+..|+.+|+.+..+ +.+|+|+|++||||||||..|+++|..+. ..|+.-.
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 34456899999999999999999999999999999866 89999999999999999999999998873 3566667
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
..+..++++|+.+..++.+|..|+...|+|+|+||||-|++.. .+......+..+|+..|+++.+.. .|+|||+|
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg---qVvvigAT 413 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG---QVVVIGAT 413 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC---ceEEEccc
Confidence 7889999999999999999999999999999999999998843 344556789999999999997754 89999999
Q ss_pred CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
|+++.+|++++| ||++.++ |..|+.++..... .....-++.||+.|.||.|+||+.+|..|...++++.
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 999999999999 9999887 9999999988773 3344557899999999999999999999999999876
Q ss_pred HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCC
Q psy7809 269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV 325 (343)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~ 325 (343)
.-+ .|.. .+ .+. -+...+.|...||..|+.+..|+.
T Consensus 494 ~Pq-~y~s-----~~------------kl~---~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 494 FPQ-IYSS-----SD------------KLL---IDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred cCe-eecc-----cc------------ccc---ccchhhhhhhHhhhhhhhccCCCC
Confidence 431 0100 00 000 122334488899999999988764
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=4e-28 Score=220.24 Aligned_cols=162 Identities=20% Similarity=0.214 Sum_probs=137.3
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHc-----CCcEEEEccccc
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARAR-----APAVIFIDEVDA 159 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~ 159 (343)
++++|.+++||||||||||++|+++|++++.+++.++..++.++++|++++.++.+|..|... +||||||||||.
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 358999999999999999999999999999999999999999999999999999999999764 699999999999
Q ss_pred ccCCCC--chhhhHHH-HHHHhhhcccCC---------CCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch------H
Q psy7809 160 FCSGSR--EHEATRRV-RCELLSHMDGVG---------TGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------P 219 (343)
Q Consensus 160 l~~~~~--~~~~~~~~-~~~ll~~l~~~~---------~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~------r 219 (343)
+++... +.....++ ..+|+..+|+.. ......+|+||+|||+|+.||++++| ||++.+. |
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R 303 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 303 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHH
Confidence 998532 22333445 478999887642 11224579999999999999999999 9999877 9
Q ss_pred HHHHhhhhcCCCCCCcccHHHHHHHccC
Q psy7809 220 IQIIGLCLGEIRKDPNVDVATLSKQLIG 247 (343)
Q Consensus 220 ~~il~~~~~~~~~~~~~~~~~la~~t~g 247 (343)
.+||+.+++...+. ..++..|+..+.|
T Consensus 304 ~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 304 IGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 99999999987654 5777888887766
No 38
>KOG0736|consensus
Probab=99.89 E-value=6.5e-22 Score=191.37 Aligned_cols=233 Identities=23% Similarity=0.338 Sum_probs=180.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH 167 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~ 167 (343)
....+||+|+||||||++++++|.++|.|++.++|.++.+...+..+.++..+|..++.+.|+||||-++|.+.....+
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg- 508 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG- 508 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999853333
Q ss_pred hhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCCCcccHH
Q psy7809 168 EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVA 239 (343)
Q Consensus 168 ~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~ 239 (343)
....+++..+...+..--......+++||++++..+.+++.+++.|.+.|. |.+||++++....+..++...
T Consensus 509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 444455555555444111111244899999999999999999996666665 999999999999988999999
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHH
Q psy7809 240 TLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKE 319 (343)
Q Consensus 240 ~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~ 319 (343)
.+|.+|.||+.+|+..++..+-..+..+... .+..+......++ .+......++++||.+|+.
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~-~~l~g~~~~~~~~----------------~~~~~~~~l~~edf~kals 651 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKN-KGLAGGLQEEDEG----------------ELCAAGFLLTEEDFDKALS 651 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHh-hcccccchhcccc----------------ccccccceecHHHHHHHHH
Confidence 9999999999999999998884444444433 2222111111000 1222345699999999999
Q ss_pred hcC------------CCCCHHHHHHHHHHHH
Q psy7809 320 KCR------------KSVDGALIRKYKRWNE 338 (343)
Q Consensus 320 ~~~------------p~~~~~~~~~~~~~~~ 338 (343)
+++ |+|+|+++--+++...
T Consensus 652 ~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 652 RLQKEFSDAIGAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred HHHHhhhhhcCCCCCCccchhcccCHHHHHH
Confidence 775 8899998877766543
No 39
>KOG0735|consensus
Probab=99.89 E-value=3.8e-22 Score=191.37 Aligned_cols=224 Identities=23% Similarity=0.260 Sum_probs=171.4
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCCcccccccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPSSLTSKHYG 131 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~~l~~~~~~ 131 (343)
.|++-...+|+...+....| +..+.++||+||+|||||.||++++.++. +++..++|+.+......
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 45666667777666644444 23456899999999999999999999874 57889999999988888
Q ss_pred chHHHHHHHHHHHHHcCCcEEEEcccccccCC-CC---chhhhHHHHHHHh-hhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809 132 ESEKLVRALFETARARAPAVIFIDEVDAFCSG-SR---EHEATRRVRCELL-SHMDGVGTGSGDKGVLVLAATNHPWDLD 206 (343)
Q Consensus 132 ~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-~~---~~~~~~~~~~~ll-~~l~~~~~~~~~~~v~vI~ttn~~~~l~ 206 (343)
...+.+..+|..|.|++|+||+||++|.|++. .. +.......+..++ +.+..+... ...+.||+|.+....++
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~--~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKR--NRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHcc--CcEEEEEEechhhhhcC
Confidence 88999999999999999999999999999972 11 2222233333444 333333332 33679999999999999
Q ss_pred HHHhc--cccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy7809 207 EALKR--RFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFT 275 (343)
Q Consensus 207 ~~l~~--rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~ 275 (343)
+.+.+ +|+..+. |.+||+..+.+.... ..-|++.++..|+||...|+..++++|++.|+.+...
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris----- 630 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS----- 630 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-----
Confidence 99988 6666555 999999988876321 2344555999999999999999999999999965543
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 276 GVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
+.+. .+|.++|.++++.+.|.
T Consensus 631 ---------------------------~~~k-lltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 631 ---------------------------NGPK-LLTKELFEKSLKDFVPL 651 (952)
T ss_pred ---------------------------cCcc-cchHHHHHHHHHhcChH
Confidence 0111 49999999999999875
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=2.1e-21 Score=174.87 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=148.6
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccC---CCCceEEEEcCCCchHHHHHHHHHHHh-------CCceEEEcCC
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL---RPWRGILLFGPPGTGKTLLAKAVASQH-------GSTFFNVLPS 123 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~---~~~~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~~v~~~ 123 (343)
.+++++|++++|+++.+++.+..........+. ....+++|+||||||||++|+++|+.+ ..+++++++.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467899999999999999887755443333332 234579999999999999999999875 2478889999
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
++.+.+++.....+..+|..+. ++||||||+|.|... .+.......+..|+..++... ..+++|+++...+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~-~~~~~~~~~i~~Ll~~~e~~~-----~~~~vila~~~~~ 154 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG-GEKDFGKEAIDTLVKGMEDNR-----NEFVLILAGYSDE 154 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC-CccchHHHHHHHHHHHHhccC-----CCEEEEecCCcch
Confidence 9999999998888888887764 479999999999642 222234566778888887542 2456666554322
Q ss_pred -----CCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHc-------c--CCCHHHHHHHHHHH
Q psy7809 204 -----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQL-------I--GYSGSDIRDLCQEI 260 (343)
Q Consensus 204 -----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t-------~--g~s~~di~~l~~~A 260 (343)
.++|++.+||...+. +..|++.++..... .++..+..+++.. . .-+++.++++++.|
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 367899999976665 77888888775432 2222244443321 1 12678888899988
Q ss_pred HHHHHHHHHH
Q psy7809 261 ILIAAREVIQ 270 (343)
Q Consensus 261 ~~~a~~r~~~ 270 (343)
......|.+.
T Consensus 235 ~~~~~~r~~~ 244 (261)
T TIGR02881 235 IRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHhc
Confidence 8888777765
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=6.3e-21 Score=173.14 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=148.2
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHh-ccC---CCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcCCc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFK-GIL---RPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLPSS 124 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~---~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~~~ 124 (343)
++++|++++|+++.+++.+... +.+.. .+. .++.+++|+||||||||++|+++|..+. .+++++++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~-~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLI-DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999998866332 23322 222 2345699999999999999999998762 3689999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC-
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW- 203 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~- 203 (343)
+.+.+.|.+......+|..+. ++||||||+|.+................|+..|+... .+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-----~~~~vI~ag~~~~~ 173 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-----DDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-----CCEEEEEeCCcHHH
Confidence 988888887777777777653 4799999999997644444456778888888887542 3577777765422
Q ss_pred ----CCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHH----Hc--cCC-CHHHHHHHHHHHHHH
Q psy7809 204 ----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSK----QL--IGY-SGSDIRDLCQEIILI 263 (343)
Q Consensus 204 ----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~----~t--~g~-s~~di~~l~~~A~~~ 263 (343)
.++|++.+||+..+. +..|+..++...... .+.....+.. .. ..| +++++++++++|...
T Consensus 174 ~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 174 DKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 346999999988776 778888887764221 1222223333 22 334 389999999999999
Q ss_pred HHHHHHH
Q psy7809 264 AAREVIQ 270 (343)
Q Consensus 264 a~~r~~~ 270 (343)
...|...
T Consensus 254 ~~~r~~~ 260 (287)
T CHL00181 254 QANRIFE 260 (287)
T ss_pred HHHHHHc
Confidence 8888876
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.5e-21 Score=155.80 Aligned_cols=125 Identities=42% Similarity=0.652 Sum_probs=111.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCC--Cchh
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARA-PAVIFIDEVDAFCSGS--REHE 168 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~--~~~~ 168 (343)
+||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....+..+|..+.... |+||+|||+|.+.... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998888999999999999999887 9999999999998754 4455
Q ss_pred hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHh-ccccCcch
Q psy7809 169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALK-RRFEKRIS 218 (343)
Q Consensus 169 ~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~-~rf~~~i~ 218 (343)
....+...|+..++..... ..+++||+|||.++.+++.++ +||+.++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~--~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~ 129 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK--NSRVIVIATTNSPDKIDPALLRSRFDRRIE 129 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT--SSSEEEEEEESSGGGSCHHHHSTTSEEEEE
T ss_pred ccccccceeeecccccccc--cccceeEEeeCChhhCCHhHHhCCCcEEEE
Confidence 6678888999999877553 347999999999999999999 89987763
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=2.4e-20 Score=169.45 Aligned_cols=205 Identities=21% Similarity=0.259 Sum_probs=149.0
Q ss_pred cccccHHHHHHHHHHHhccccChHHHh-ccC---CCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcCCcc
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFK-GIL---RPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLPSSL 125 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~---~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~~~l 125 (343)
+++|++++|+++.+++.+.. .+.... .+. .+..+++|+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 68999999999999887643 333322 222 2445899999999999999999988763 36999999898
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC--C
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP--W 203 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~--~ 203 (343)
...+.|.....+..+|..+. +++|||||+|.+.....+......+...|+..|+... .+++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-----~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-----DDLVVILAGYKDRMD 173 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-----CCEEEEEeCCcHHHH
Confidence 88888887777778887763 3899999999996543344456677888888887432 367777776543 2
Q ss_pred ---CCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHc------cCC-CHHHHHHHHHHHHHHH
Q psy7809 204 ---DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQL------IGY-SGSDIRDLCQEIILIA 264 (343)
Q Consensus 204 ---~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t------~g~-s~~di~~l~~~A~~~a 264 (343)
.+++++.+||...+. +..|++.++.+.... ....+..++... +.+ +++++++++++|....
T Consensus 174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 247999999987776 777888888775321 222233444432 122 6899999999999888
Q ss_pred HHHHHH
Q psy7809 265 AREVIQ 270 (343)
Q Consensus 265 ~~r~~~ 270 (343)
..|...
T Consensus 254 ~~r~~~ 259 (284)
T TIGR02880 254 ANRLFC 259 (284)
T ss_pred HHHHhc
Confidence 888875
No 44
>KOG0742|consensus
Probab=99.83 E-value=5.2e-20 Score=167.13 Aligned_cols=201 Identities=24% Similarity=0.422 Sum_probs=149.6
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
....+..|++++-...+.+.|..+...-.... ....+.+++|||||||||||++|+.+|...|..+-.+...++.-
T Consensus 347 s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP 422 (630)
T KOG0742|consen 347 SSRGKDPLEGVILHPSLEKRIEDLAIATANTK----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP 422 (630)
T ss_pred hhcCCCCcCCeecCHHHHHHHHHHHHHhcccc----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc
Confidence 34455668999999999998887765321110 01256689999999999999999999999999988888777654
Q ss_pred ccccchHHHHHHHHHHHHHcCCc-EEEEcccccccCCCCc---hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 128 KHYGESEKLVRALFETARARAPA-VIFIDEVDAFCSGSRE---HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a~~~~p~-il~iDeid~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
.. ......++.+|+.++....+ +|||||+|.++-..+. ++..+..++.|+--- . .....++++.+||+|.
T Consensus 423 lG-~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT---G--dqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 423 LG-AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT---G--DQSRDIVLVLATNRPG 496 (630)
T ss_pred cc-hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh---c--ccccceEEEeccCCcc
Confidence 32 23456799999999876644 8899999998764333 344455555554322 1 1234799999999999
Q ss_pred CCCHHHhccccCcch--------HHHHHhhhhcCCCC---------------------------CCcccHHHHHHHccCC
Q psy7809 204 DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK---------------------------DPNVDVATLSKQLIGY 248 (343)
Q Consensus 204 ~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~---------------------------~~~~~~~~la~~t~g~ 248 (343)
++|.++-+|++..++ |..++..|+.++.. ..+.-+.+.|..|+||
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999999999999887 88898888876421 0122377899999999
Q ss_pred CHHHHHHHHH
Q psy7809 249 SGSDIRDLCQ 258 (343)
Q Consensus 249 s~~di~~l~~ 258 (343)
||++|..|+-
T Consensus 577 SGREiakLva 586 (630)
T KOG0742|consen 577 SGREIAKLVA 586 (630)
T ss_pred cHHHHHHHHH
Confidence 9999998864
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=1.8e-19 Score=154.02 Aligned_cols=188 Identities=19% Similarity=0.271 Sum_probs=116.5
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
....+.+|+|++||++++..+.-++...... .....++|||||||+||||||+.+|++++.++..++...+..
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 3455779999999999999988766532211 134568999999999999999999999999999887754322
Q ss_pred ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC-----CC--------CCCCEE
Q psy7809 128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT-----GS--------GDKGVL 194 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~--------~~~~v~ 194 (343)
.+ .+..++.... ...||||||||.+ .+.....|+..|+...- .. +-.++.
T Consensus 89 --~~----dl~~il~~l~--~~~ILFIDEIHRl---------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 --AG----DLAAILTNLK--EGDILFIDEIHRL---------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp --CH----HHHHHHHT----TT-EEEECTCCC-----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred --HH----HHHHHHHhcC--CCcEEEEechhhc---------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 12 2333333332 3479999999988 34556667777664321 11 013588
Q ss_pred EEEecCCCCCCCHHHhccccCcch-----HHHHHhhh---hcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 195 VLAATNHPWDLDEALKRRFEKRIS-----PIQIIGLC---LGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~rf~~~i~-----r~~il~~~---~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
+|++|++...|.+++++||..... ..++.++. ....... .+....++|.++.| +|+--..+++++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 999999999999999999987543 44444433 3333322 33446789999988 677665665543
No 46
>KOG0744|consensus
Probab=99.81 E-value=1e-19 Score=160.85 Aligned_cols=200 Identities=29% Similarity=0.395 Sum_probs=148.7
Q ss_pred CCcccccHHHHHHHHHHHhccccChHH--HhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---------CceEEEcCC
Q psy7809 55 WDDIAGLDNVKQIFKETLLLPKLMPQL--FKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------STFFNVLPS 123 (343)
Q Consensus 55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~--~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------~~~~~v~~~ 123 (343)
|+.++=-..+|+.|..+....+.-.+. -...+...+-+||+||||||||+|++++|+.+. ..++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 456666678899888877654332221 112345556799999999999999999999874 468899999
Q ss_pred ccccccccchHHHHHHHHHHHHHcCC---c--EEEEcccccccC------CCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAP---A--VIFIDEVDAFCS------GSREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p---~--il~iDeid~l~~------~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
.+.+++++++.+.+..+|+......- + .++|||++.|+. .+.+....-++.++++.++|++.... +
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~---N 297 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP---N 297 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC---C
Confidence 99999999999999999988865431 2 677999999975 24444566799999999999987654 8
Q ss_pred EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC------------------CcccHHHHHHH-c
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD------------------PNVDVATLSKQ-L 245 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~------------------~~~~~~~la~~-t 245 (343)
|++++|+|-.+.+|.++.+|-+.+.+ +.+|++.++.+.... .+.....++.. +
T Consensus 298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999998777665 777777776653100 11122334433 3
Q ss_pred cCCCHHHHHHHH
Q psy7809 246 IGYSGSDIRDLC 257 (343)
Q Consensus 246 ~g~s~~di~~l~ 257 (343)
.|.||+-|+.|=
T Consensus 378 ~gLSGRtlrkLP 389 (423)
T KOG0744|consen 378 VGLSGRTLRKLP 389 (423)
T ss_pred cCCccchHhhhh
Confidence 788998888753
No 47
>KOG0743|consensus
Probab=99.80 E-value=1.1e-18 Score=161.44 Aligned_cols=198 Identities=20% Similarity=0.286 Sum_probs=147.7
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccC-CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL-RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
+.-.++.+|+.++-..++|+.|.+-+..+.....++.... ..-+|.|||||||||||+++.|+|++++..++.+...+.
T Consensus 192 v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v 271 (457)
T KOG0743|consen 192 VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV 271 (457)
T ss_pred cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc
Confidence 3445568899999889999999999988888888877653 444799999999999999999999999999999977665
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC---CCc----h--hhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG---SRE----H--EATRRVRCELLSHMDGVGTGSGDKGVLVL 196 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~---~~~----~--~~~~~~~~~ll~~l~~~~~~~~~~~v~vI 196 (343)
... .. ++.++..+.. .+||+|+|||.-+.- ... . ....-.+.-||+.+|++.+... .-.+||
T Consensus 272 ~~n-----~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIiv 342 (457)
T KOG0743|consen 272 KLD-----SD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIV 342 (457)
T ss_pred cCc-----HH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEE
Confidence 433 12 6666654433 379999999987641 111 0 1233567789999999988763 457899
Q ss_pred EecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCC--CHHHHHH
Q psy7809 197 AATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGY--SGSDIRD 255 (343)
Q Consensus 197 ~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~--s~~di~~ 255 (343)
.|||.++.|||+|+| |++..|+ -+.+...++.... +..-++++.+..++- ||+|+..
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 999999999999999 9999998 4444444443321 244466676666654 8999864
No 48
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=2.4e-18 Score=175.43 Aligned_cols=250 Identities=18% Similarity=0.212 Sum_probs=174.9
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---- 113 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---- 113 (343)
+.+.+..++.....+-.+++++|+++....+.+.+.. ....+++|+||||||||++|+.+|.++
T Consensus 164 ~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~ 231 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGK 231 (731)
T ss_pred HHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4444555666666778899999999999988877754 234689999999999999999999987
Q ss_pred ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809 114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG 185 (343)
Q Consensus 114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~ 185 (343)
+.+++.+++..+. ..+.|+.+..++.+|+.+.+..++||||||+|.|++.+...+......+.|...+.
T Consensus 232 ~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--- 308 (731)
T TIGR02639 232 VPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--- 308 (731)
T ss_pred CchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---
Confidence 6789999988887 46788999999999999988888999999999998743222222223444444443
Q ss_pred CCCCCCCEEEEEecCCC-----CCCCHHHhccccCcch--------HHHHHhhhhcCC----C-CCCcccHHHHHHHccC
Q psy7809 186 TGSGDKGVLVLAATNHP-----WDLDEALKRRFEKRIS--------PIQIIGLCLGEI----R-KDPNVDVATLSKQLIG 247 (343)
Q Consensus 186 ~~~~~~~v~vI~ttn~~-----~~l~~~l~~rf~~~i~--------r~~il~~~~~~~----~-~~~~~~~~~la~~t~g 247 (343)
.+.+.+|++|+.. ...|+++.|||.. +. +..|++...... . ...+..+..++..+..
T Consensus 309 ----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 309 ----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred ----CCCeEEEEecCHHHHHHHhhhhHHHHHhCce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 2368899999863 3579999999974 43 777777655442 1 2355567778888877
Q ss_pred CCHHH-----HHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 248 YSGSD-----IRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 248 ~s~~d-----i~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
|-+.. --+++++|+.....+.. ......|+.+|+..++....
T Consensus 384 yi~~r~~P~kai~lld~a~a~~~~~~~---------------------------------~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 384 YINDRFLPDKAIDVIDEAGASFRLRPK---------------------------------AKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred ccccccCCHHHHHHHHHhhhhhhcCcc---------------------------------cccccccCHHHHHHHHHHHh
Confidence 74332 23555555443221100 00123499999999999885
Q ss_pred --C--CCCHHHHHHHHHHHHHh
Q psy7809 323 --K--SVDGALIRKYKRWNELY 340 (343)
Q Consensus 323 --p--~~~~~~~~~~~~~~~~~ 340 (343)
| .+++++...+....+.+
T Consensus 431 giP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 431 HIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred CCChhhhhhHHHHHHHHHHHHH
Confidence 3 35667777776665544
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1e-17 Score=165.21 Aligned_cols=186 Identities=22% Similarity=0.215 Sum_probs=129.6
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++++.+|++|+|++.+++.|...+... +.++.+||+||+|+|||++++.+|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 457889999999999999999999887642 344568999999999999999999998652
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
+++++..+ ......++.++..+.. ....|+||||+|.| .....+.|
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L---------T~~A~NAL 139 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML---------TNHAFNAM 139 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC---------CHHHHHHH
Confidence 22222211 1112334555554432 23469999999988 23457788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~t~g~s 249 (343)
++.|+.. ..++.||++||+++.|.+.|+||+...-. ..+| |+..+....+ .++..+..|++.+.| +
T Consensus 140 LKtLEEP-----P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP-----PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc-----CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8988765 34789999999999999999997643333 2233 3333332222 245567789999988 5
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIILI 263 (343)
Q Consensus 250 ~~di~~l~~~A~~~ 263 (343)
.++..++++.++.+
T Consensus 214 mRdALsLLdQAia~ 227 (830)
T PRK07003 214 MRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776654
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=4.2e-18 Score=161.97 Aligned_cols=186 Identities=18% Similarity=0.186 Sum_probs=128.6
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------- 116 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------- 116 (343)
.+.+++.+.+|++++|++.+...|...+... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 3557889999999999999999998887643 334568999999999999999999998763
Q ss_pred ----------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
+++++... ......++.+...+. .....|+||||+|.| .....+.
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L---------s~~A~NA 140 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML---------TDQSFNA 140 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc---------CHHHHHH
Confidence 22222211 011223444433332 234569999999988 3356788
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----H---HHHHhhhhcCCC-CCCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----P---IQIIGLCLGEIR-KDPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r---~~il~~~~~~~~-~~~~~~~~~la~~t~g~ 248 (343)
|++.++.. +..+++|++|+.++.+.+++++|+..... . ...++..+.... ..++..+..||+.++|
T Consensus 141 LLKtLEEP-----p~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G- 214 (484)
T PRK14956 141 LLKTLEEP-----PAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG- 214 (484)
T ss_pred HHHHhhcC-----CCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 45789999999999999999998653322 2 223333333322 2245567889999988
Q ss_pred CHHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEIIL 262 (343)
Q Consensus 249 s~~di~~l~~~A~~ 262 (343)
+.+|..++++.++.
T Consensus 215 d~RdAL~lLeq~i~ 228 (484)
T PRK14956 215 SVRDMLSFMEQAIV 228 (484)
T ss_pred hHHHHHHHHHHHHH
Confidence 57777777776653
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.6e-17 Score=144.99 Aligned_cols=230 Identities=19% Similarity=0.217 Sum_probs=158.2
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~ 128 (343)
.-.+..|++++|++++|++|.-++.....+. ...-++|||||||.||||||..+|++++..+...+.+-+...
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 3457889999999999999998887543322 455789999999999999999999999999888776655422
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC--------CCC-----CCCCEEE
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG--------TGS-----GDKGVLV 195 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~-----~~~~v~v 195 (343)
+ .+..++..... .+||||||||.+.+ .+-..|...|+.+. ... .-.++.+
T Consensus 92 --g----DlaaiLt~Le~--~DVLFIDEIHrl~~---------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 92 --G----DLAAILTNLEE--GDVLFIDEIHRLSP---------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred --h----hHHHHHhcCCc--CCeEEEehhhhcCh---------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2 23333333322 37999999999943 33334444554321 110 1236889
Q ss_pred EEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809 196 LAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 196 I~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~ 266 (343)
||+|.+...|...+++||..... ...|+.+....+... .+....++|+++.| +|+=-..|+++..-.|..
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQV 233 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHH
Confidence 99999999999999999976654 556666655554333 34456789999999 666555666665555543
Q ss_pred HHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHh
Q psy7809 267 EVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR---KSVDGALIRKYKRWNELY 340 (343)
Q Consensus 267 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~---p~~~~~~~~~~~~~~~~~ 340 (343)
+... .|+.+--.+|++... .-..+-+.+.+.-..+.|
T Consensus 234 ~~~~-------------------------------------~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 234 KGDG-------------------------------------DIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred hcCC-------------------------------------cccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHh
Confidence 3211 277777777877775 335666777777777777
No 52
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=3.3e-18 Score=166.56 Aligned_cols=186 Identities=22% Similarity=0.244 Sum_probs=129.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------- 116 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------- 116 (343)
.+.+++++.+|++|+|++.+++.|...+... +.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 3457889999999999999999999888643 345678999999999999999999998762
Q ss_pred ---------------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhH
Q psy7809 117 ---------------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATR 171 (343)
Q Consensus 117 ---------------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~ 171 (343)
+++++..+ ......++.+.+.+. .....|+||||+|.| ..
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L---------s~ 138 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML---------TN 138 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc---------CH
Confidence 22222211 111233444444432 234569999999988 33
Q ss_pred HHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh---hhcCCCC-CCcccHHHHHH
Q psy7809 172 RVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL---CLGEIRK-DPNVDVATLSK 243 (343)
Q Consensus 172 ~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~---~~~~~~~-~~~~~~~~la~ 243 (343)
...+.|++.|+.. ..+++||++|+.++.|.+.|+||+...-. ..++.++ .+..... .++..++.|++
T Consensus 139 ~AaNALLKTLEEP-----P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEEP-----PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhccC-----CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5678899998854 44789999999999999999997654433 3333322 2222222 23344678888
Q ss_pred HccCCCHHHHHHHHHHHHH
Q psy7809 244 QLIGYSGSDIRDLCQEIIL 262 (343)
Q Consensus 244 ~t~g~s~~di~~l~~~A~~ 262 (343)
.+.| +.++..++++.++.
T Consensus 214 ~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 214 AAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 9888 68888787776554
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=2.7e-17 Score=153.06 Aligned_cols=194 Identities=21% Similarity=0.216 Sum_probs=131.1
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
.+..+..|++++|+++.++.+...+..... ...++.+++|+||||||||++|+++|++++..+..++...+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 345677899999999999999887753211 1145678999999999999999999999998887766543321
Q ss_pred ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC------CC-------CCCCCEE
Q psy7809 128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG------TG-------SGDKGVL 194 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~------~~-------~~~~~v~ 194 (343)
...+..++... ..++||||||+|.+... ....+...++... .. ....++.
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~---------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPV---------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchH---------HHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 12233444332 34689999999988421 1112223332211 00 0012478
Q ss_pred EEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 195 VLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
+|++|+.+..+++.+++||...+. +.++++........ .++..++.|++.+.|. ++.+..+++++...+.
T Consensus 153 li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~~a~ 231 (328)
T PRK00080 153 LIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRDFAQ 231 (328)
T ss_pred EEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHHHHH
Confidence 899999999999999999865543 66777766655432 2444578999999884 6878788887666655
Q ss_pred H
Q psy7809 266 R 266 (343)
Q Consensus 266 ~ 266 (343)
.
T Consensus 232 ~ 232 (328)
T PRK00080 232 V 232 (328)
T ss_pred H
Confidence 3
No 54
>KOG2004|consensus
Probab=99.76 E-value=2.1e-17 Score=159.29 Aligned_cols=198 Identities=21% Similarity=0.237 Sum_probs=147.1
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCC
Q psy7809 18 KGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILR 87 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~ 87 (343)
+..+-+.+..+.++-..+.++.+.+..-.+.+.....| +|..|++++|+++.+++........ .
T Consensus 363 El~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs------~ 436 (906)
T KOG2004|consen 363 ELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGS------V 436 (906)
T ss_pred HHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhccc------C
Confidence 44555667778888888999999998777766665555 5789999999999999976543322 3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc---------cccccchHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT---------SKHYGESEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
.+.-+.|+||||+|||+++++||+.+++.|+.++...+. ..|+|.+...+-+.++.+....| +++|||+|
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvD 515 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVD 515 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhh
Confidence 445688999999999999999999999999999876554 34788888888888888888776 88899999
Q ss_pred cccCCCCchhhhHHHHHHHhhhcc---------cCCCCC-CCCCEEEEEecCCCCCCCHHHhccccCcch-------HHH
Q psy7809 159 AFCSGSREHEATRRVRCELLSHMD---------GVGTGS-GDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQ 221 (343)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~-~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~ 221 (343)
++..+.++...+ +|++.|| .+-... .-++|++|||+|..+.++++|++|++..-. ...
T Consensus 516 KlG~g~qGDPas-----ALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~ 590 (906)
T KOG2004|consen 516 KLGSGHQGDPAS-----ALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVK 590 (906)
T ss_pred hhCCCCCCChHH-----HHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHH
Confidence 998543333332 4555554 111111 134899999999999999999999765432 445
Q ss_pred HHhhhh
Q psy7809 222 IIGLCL 227 (343)
Q Consensus 222 il~~~~ 227 (343)
|.+.|+
T Consensus 591 IA~~yL 596 (906)
T KOG2004|consen 591 IAERYL 596 (906)
T ss_pred HHHHhh
Confidence 555544
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=3.6e-17 Score=150.82 Aligned_cols=187 Identities=20% Similarity=0.244 Sum_probs=123.7
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccch
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES 133 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~ 133 (343)
+|++++|++++++.|..++...... ...+.+++|+||||||||++|+++|++++..+..+....+.. .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~--- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P--- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c---
Confidence 6899999999999999887532111 134568999999999999999999999998877665433221 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-------------CCCCCEEEEEecC
Q psy7809 134 EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-------------SGDKGVLVLAATN 200 (343)
Q Consensus 134 ~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-------------~~~~~v~vI~ttn 200 (343)
..+...+... ..+.+|||||+|.+.. .....|...++..... ....++.+|++|+
T Consensus 70 -~~l~~~l~~~--~~~~vl~iDEi~~l~~---------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 70 -GDLAAILTNL--EEGDVLFIDEIHRLSP---------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred -hhHHHHHHhc--ccCCEEEEehHhhhCH---------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 1122222222 3457999999998843 1222333333322100 0122478999999
Q ss_pred CCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 201 ~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
.+..+++++++||...+. ..++++........ .++..++.+++.+.|+ ++.+..++..+...|.
T Consensus 138 ~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 138 RAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQ 210 (305)
T ss_pred CccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHH
Confidence 999999999999965543 56666665554322 2445578899999885 5777777776655443
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=9.5e-17 Score=156.86 Aligned_cols=185 Identities=19% Similarity=0.212 Sum_probs=127.9
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++++.+|++|+|++.+++.|...+... ..+..+||+||+|+|||++|+++|+.+++.
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 457788999999999999999999888632 345678999999999999999999998752
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
++.++..+- .....++.+...+. .....|+||||+|.|. ....+.|
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS---------~~A~NAL 138 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS---------THSFNAL 138 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC---------HHHHHHH
Confidence 333333211 11233455544432 2235699999999882 3456788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HH---HHHhhhhcCC-CCCCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PI---QIIGLCLGEI-RKDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~---~il~~~~~~~-~~~~~~~~~~la~~t~g~s 249 (343)
++.++.. +..+.+|++|+.+..+.+.+++|+...-. .. ..++..+... ....+..+..||+.+.| +
T Consensus 139 LKtLEEP-----P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEP-----PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcC-----CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888754 34678888888899999999887643322 22 2333333332 22345557889999877 7
Q ss_pred HHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIIL 262 (343)
Q Consensus 250 ~~di~~l~~~A~~ 262 (343)
.+++.+++..++.
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776654
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.1e-16 Score=160.60 Aligned_cols=192 Identities=20% Similarity=0.186 Sum_probs=127.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE-E----
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF-N---- 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~-~---- 119 (343)
.+.+++++.+|++|+|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++.-. .
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC 73 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC 73 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence 3456788999999999999999999887642 33456799999999999999999999876411 0
Q ss_pred EcC---Ccccccc------c----cchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 120 VLP---SSLTSKH------Y----GESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 120 v~~---~~l~~~~------~----~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
-.| ..+.... + ......++.+...+. .....|+||||+|.| ....++.|++.|+
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L---------T~eAqNALLKtLE 144 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML---------SRSSFNALLKTLE 144 (944)
T ss_pred CCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc---------CHHHHHHHHHHHh
Confidence 000 0000000 0 011223444443332 223469999999988 4567889999998
Q ss_pred cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCC-CCCcccHHHHHHHccCCCHHHHH
Q psy7809 183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIR 254 (343)
Q Consensus 183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~ 254 (343)
.. +..+.+|++|+.+..|.+.|++|+...-. ..++ |+..+.... ...+..+..|+..+.| +.+++.
T Consensus 145 EP-----P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~AL 218 (944)
T PRK14949 145 EP-----PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDAL 218 (944)
T ss_pred cc-----CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 64 44678888899999999999987533222 2222 233232221 2244457889999988 688888
Q ss_pred HHHHHHHH
Q psy7809 255 DLCQEIIL 262 (343)
Q Consensus 255 ~l~~~A~~ 262 (343)
+++..|+.
T Consensus 219 nLLdQala 226 (944)
T PRK14949 219 SLTDQAIA 226 (944)
T ss_pred HHHHHHHH
Confidence 88887663
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2e-17 Score=161.11 Aligned_cols=187 Identities=21% Similarity=0.191 Sum_probs=129.3
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------- 116 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------- 116 (343)
.+.+++++.+|++|+|++.+++.|...+... ..+..+||+||+|+|||++|+.+|+.+++.
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 3457889999999999999999999888643 345568999999999999999999998653
Q ss_pred ----------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
+++++..+ ......++.+...+.. ....|+||||+|.|. ....+.
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls---------~~a~na 138 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS---------GHSFNA 138 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC---------HHHHHH
Confidence 34443321 1122234555444322 234699999999883 345778
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~t~g~ 248 (343)
|++.|+.. +..+.+|++|++++.+.+.+++|+...-. ..++ ++..+..... .++..+..+++.+.|
T Consensus 139 LLk~LEep-----p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEEP-----PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhcc-----CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 89988864 44678888888899999899997533222 2222 2333333322 244557789999877
Q ss_pred CHHHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEIILI 263 (343)
Q Consensus 249 s~~di~~l~~~A~~~ 263 (343)
+.+++.++++.++.+
T Consensus 213 slR~al~lLdq~ia~ 227 (509)
T PRK14958 213 SVRDALSLLDQSIAY 227 (509)
T ss_pred cHHHHHHHHHHHHhc
Confidence 788888888776543
No 59
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=4.1e-17 Score=167.25 Aligned_cols=233 Identities=20% Similarity=0.187 Sum_probs=148.6
Q ss_pred CCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEE
Q psy7809 24 GVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGIL 93 (343)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vl 93 (343)
..+...++......+.+.+..-.+.+.....+ ++++|++++++.+.+++........ ..+.+++
T Consensus 278 ~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~------~~~~~ll 351 (775)
T TIGR00763 278 LLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK------MKGPILC 351 (775)
T ss_pred cCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC------CCCceEE
Confidence 34445555555556656555433333332222 3589999999999998765422111 2334799
Q ss_pred EEcCCCchHHHHHHHHHHHhCCceEEEcCCccc---------cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC
Q psy7809 94 LFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT---------SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164 (343)
Q Consensus 94 l~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~ 164 (343)
|+||||||||++|+++|+.++.+++.+++..+. ..|.|.....+...|..+....| ||+|||||.+....
T Consensus 352 l~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~ 430 (775)
T TIGR00763 352 LVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF 430 (775)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc
Confidence 999999999999999999999999999765432 23455555556667776655555 89999999997532
Q ss_pred CchhhhHHHHHHHhhhccc-----CC----C-CCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhh
Q psy7809 165 REHEATRRVRCELLSHMDG-----VG----T-GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLC 226 (343)
Q Consensus 165 ~~~~~~~~~~~~ll~~l~~-----~~----~-~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~ 226 (343)
+.. ..+.|++.++. +. . .-..+++++|+|||..+.+++++++||. .+. +..|++.+
T Consensus 431 ~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 431 RGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred CCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHH
Confidence 221 23455555542 10 0 0012478999999999999999999985 333 66777665
Q ss_pred hc-----CCCC------CCcccHHHHHH-HccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 227 LG-----EIRK------DPNVDVATLSK-QLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 227 ~~-----~~~~------~~~~~~~~la~-~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
+. ...+ .++..+..|++ .+..+..++|+..+++.+..+.++..
T Consensus 505 l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 505 LIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred HHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHH
Confidence 52 1111 12233444544 33344567888877777776666654
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=2.4e-16 Score=155.83 Aligned_cols=186 Identities=22% Similarity=0.212 Sum_probs=127.7
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|++|+|++.+++.|...+... ..+..+||+||+|+|||++|+.+|+.+++.
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 346788899999999999999999888642 334567999999999999999999998763
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
+++++..+ ......++.+...+. .....|+||||+|.| .....+.|
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L---------s~~a~NAL 139 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML---------SRHSFNAL 139 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC---------CHHHHHHH
Confidence 22222211 011223444443332 234569999999988 34678899
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHH---hhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQII---GLCLGEIR-KDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il---~~~~~~~~-~~~~~~~~~la~~t~g~s 249 (343)
++.|+.. +..+.+|++|++++.|.+.++||+...-. ..+|. ...+.... ..++..+..|+..+.| +
T Consensus 140 LKtLEEP-----p~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEEP-----PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHcC-----CCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999854 44788888899999999999997533222 33333 33232222 2344557789999888 6
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIILI 263 (343)
Q Consensus 250 ~~di~~l~~~A~~~ 263 (343)
.++...+++.|+..
T Consensus 214 ~R~Al~lldqaia~ 227 (647)
T PRK07994 214 MRDALSLTDQAIAS 227 (647)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888888766543
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=4.5e-17 Score=157.07 Aligned_cols=182 Identities=17% Similarity=0.192 Sum_probs=120.7
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC----------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---------- 115 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---------- 115 (343)
+.+++++.+|++++|++.+++.|...+... ..+.++||+||||||||++|+++|+.+++
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 456788999999999999999998877643 34567899999999999999999998865
Q ss_pred --------------ceEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 116 --------------TFFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 116 --------------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
.++.++... ......++.+...+.. ....||||||+|.+. ...++.|
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt---------~~a~~~L 137 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT---------KEAFNAL 137 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH---------HHHHHHH
Confidence 233443321 1112234444444332 234699999999883 2345677
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s 249 (343)
+..++.. +..+++|++|+.+..+++++++|+...-. ...+++..+.... ..++..++.|+..+.| +
T Consensus 138 Lk~LE~p-----~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 138 LKTLEEP-----PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HHHHHhC-----CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 8887753 33677787777888999999998753222 3334444443322 2344557788888866 4
Q ss_pred HHHHHHHHHH
Q psy7809 250 GSDIRDLCQE 259 (343)
Q Consensus 250 ~~di~~l~~~ 259 (343)
.+++.+.++.
T Consensus 212 lR~aln~Le~ 221 (472)
T PRK14962 212 LRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 62
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.73 E-value=9.1e-17 Score=146.58 Aligned_cols=167 Identities=22% Similarity=0.363 Sum_probs=113.2
Q ss_pred cccCCCCCCCcccccHHHHH---HHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQ---IFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~---~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
...-.+.++++++||+.+.- -|.+.+.. ....+++|||||||||||||+.||...+.+|..++..
T Consensus 15 A~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 15 AERLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHHhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 34455788999999998873 34444432 3456899999999999999999999999999999863
Q ss_pred ccccccccchHHHHHHHHHHHHHcC----CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 124 SLTSKHYGESEKLVRALFETARARA----PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~----p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
. ...+-++.+++.++... ..||||||||.+-. .-+..|+-.++ ...+++||+|
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK---------~QQD~lLp~vE-------~G~iilIGAT 139 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK---------AQQDALLPHVE-------NGTIILIGAT 139 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh---------hhhhhhhhhhc-------CCeEEEEecc
Confidence 3 23455788888885433 47999999998833 33446777775 3467777655
Q ss_pred -CCC-CCCCHHHhccccCcch-------HHHHHhhhhcC-C-CCC------CcccHHHHHHHccCC
Q psy7809 200 -NHP-WDLDEALKRRFEKRIS-------PIQIIGLCLGE-I-RKD------PNVDVATLSKQLIGY 248 (343)
Q Consensus 200 -n~~-~~l~~~l~~rf~~~i~-------r~~il~~~~~~-~-~~~------~~~~~~~la~~t~g~ 248 (343)
.+| -.++++|+||...... -..++...+.. . .+. ++...+.|+..+.|-
T Consensus 140 TENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 140 TENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred CCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 445 4799999998654443 33333332211 1 221 233456777777774
No 63
>KOG0989|consensus
Probab=99.73 E-value=3.4e-16 Score=138.02 Aligned_cols=176 Identities=22% Similarity=0.269 Sum_probs=120.9
Q ss_pred hccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc------
Q psy7809 43 EKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST------ 116 (343)
Q Consensus 43 ~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------ 116 (343)
.+.+.+++.+.+|++++|++.+.+.|...+.. ....++|||||||||||+.|+++|+++..+
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 35678999999999999999999999988864 233579999999999999999999998762
Q ss_pred eEEEcCCccccccccchHHHHHHHHHHHHHc---------CC-cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809 117 FFNVLPSSLTSKHYGESEKLVRALFETARAR---------AP-AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~---------~p-~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
+.+.+.++..+..+... ++. -|...... .| .|++|||.|.| ....+++|.+.|+.+
T Consensus 91 vl~lnaSderGisvvr~--Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm---------tsdaq~aLrr~mE~~-- 156 (346)
T KOG0989|consen 91 VLELNASDERGISVVRE--KIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM---------TSDAQAALRRTMEDF-- 156 (346)
T ss_pred hhhhcccccccccchhh--hhc-CHHHHhhccccccCCCCCcceEEEEechhhh---------hHHHHHHHHHHHhcc--
Confidence 33334444443332211 111 12222111 12 59999999988 446788999999875
Q ss_pred CCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCCC-CcccHHHHHHHccC
Q psy7809 187 GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRKD-PNVDVATLSKQLIG 247 (343)
Q Consensus 187 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~~-~~~~~~~la~~t~g 247 (343)
...+++|..||.++.|...+.+|+.+..+ -...|+.......+. ++..++.|+..++|
T Consensus 157 ---s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 ---SRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred ---ccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 33689999999999999999997766554 223333333333222 33346677777766
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.1e-16 Score=155.05 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=131.7
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE-----
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN----- 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~----- 119 (343)
.+.+++.+.+|+|++|++.+.+.|...+... +.+.++||+||+|||||++|+++|+.+++....
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 4567889999999999999999998866532 345789999999999999999999998653110
Q ss_pred -------EcCCccccc----------cccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809 120 -------VLPSSLTSK----------HYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELL 178 (343)
Q Consensus 120 -------v~~~~l~~~----------~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll 178 (343)
-+|..+... ........++.++..+... ...|+||||+|.+. ...++.|+
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls---------~~a~naLL 149 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS---------KGAFNALL 149 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC---------HHHHHHHH
Confidence 011111100 0011234566666665432 34699999999882 34577888
Q ss_pred hhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCH
Q psy7809 179 SHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSG 250 (343)
Q Consensus 179 ~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~ 250 (343)
+.++.. +..+++|++|+.++.+.+.+++|+...-. ...+++..+..... .++..+..|++.+.| +.
T Consensus 150 k~LEep-----p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLEEP-----PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHhhc-----CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888743 34678888888888999999987542211 33444444444332 244557889999987 78
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 251 SDIRDLCQEIILIA 264 (343)
Q Consensus 251 ~di~~l~~~A~~~a 264 (343)
+++.++++.++.++
T Consensus 224 R~al~~Ldkai~~~ 237 (507)
T PRK06645 224 RDAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888876553
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.2e-16 Score=150.43 Aligned_cols=184 Identities=18% Similarity=0.187 Sum_probs=124.0
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce--------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-------- 117 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-------- 117 (343)
+.+++.+.+|++++|++.+++.+...+... ..++.+||+||+|+|||++|+++|+.+.+..
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 456788999999999999999999877542 3456789999999999999999999986421
Q ss_pred ----------------EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 118 ----------------FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 118 ----------------~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
+.+++.. ......++.+...+.. ....|++|||+|.+. ....+.|
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~---------~~a~naL 139 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS---------RHSFNAL 139 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC---------HHHHHHH
Confidence 1121110 0122335555554432 123599999999882 2456678
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s 249 (343)
++.++.. +..+.+|++|+.++.+.+++.+|+...-. ...+++..+..... .++..+..++..+.| +
T Consensus 140 Lk~lEe~-----~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEP-----PQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcC-----CCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888754 33667787888888899999987633221 23344444433322 344567788888877 6
Q ss_pred HHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEII 261 (343)
Q Consensus 250 ~~di~~l~~~A~ 261 (343)
.+++.++++.++
T Consensus 214 ~R~al~~l~~~~ 225 (363)
T PRK14961 214 MRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 66
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.2e-16 Score=151.83 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=130.2
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----------
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS----------- 115 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~----------- 115 (343)
.+++.+.+|+|++|++.+++.|...+... +.+.++||+||+|+|||++|+.+|+.+++
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 46788999999999999999998877543 45678999999999999999999987643
Q ss_pred -------------ceEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809 116 -------------TFFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELL 178 (343)
Q Consensus 116 -------------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll 178 (343)
.+++++..+- .....++.+...+.. ....|+||||+|.|. ....+.|+
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls---------~~A~NaLL 137 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS---------NSAFNALL 137 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC---------HHHHHHHH
Confidence 2344444321 122345555555532 234699999998882 34677889
Q ss_pred hhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCH
Q psy7809 179 SHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSG 250 (343)
Q Consensus 179 ~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~ 250 (343)
+.++.. +..+.+|++|+.+..+.+.+++|+...-. ....+...+.... ..++..+..|++.+.| +.
T Consensus 138 K~LEeP-----p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEP-----APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCC-----CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 998854 44678888888888899999997644322 2333333333332 2345567889999977 78
Q ss_pred HHHHHHHHHHHHH
Q psy7809 251 SDIRDLCQEIILI 263 (343)
Q Consensus 251 ~di~~l~~~A~~~ 263 (343)
+++.++++.++.+
T Consensus 212 R~alslLdqli~y 224 (491)
T PRK14964 212 RNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777654
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.5e-16 Score=155.31 Aligned_cols=186 Identities=19% Similarity=0.232 Sum_probs=127.3
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|++|+|++.+++.|...+... ..+..+||+||+|+|||++|+.+|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 457889999999999999999999988643 344568999999999999999999998652
Q ss_pred --------------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHH
Q psy7809 117 --------------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRR 172 (343)
Q Consensus 117 --------------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~ 172 (343)
+++++..+ ......++.+...+.. ....|++|||+|.| +..
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L---------s~~ 139 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML---------TNT 139 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC---------CHH
Confidence 22222111 1112345555554432 12359999999988 334
Q ss_pred HHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHH
Q psy7809 173 VRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQ 244 (343)
Q Consensus 173 ~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~ 244 (343)
..+.|++.++.. +..+.+|++|++++.+.+.+++|+...-. ..++ ++..+....+ .++..+..|++.
T Consensus 140 a~NaLLKtLEEP-----P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEP-----PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccC-----CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 577888888754 44678888888899999899997543222 3333 3333333222 234557889998
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q psy7809 245 LIGYSGSDIRDLCQEIILI 263 (343)
Q Consensus 245 t~g~s~~di~~l~~~A~~~ 263 (343)
+.| +.+++.++++.++..
T Consensus 215 s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 215 ARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred cCC-CHHHHHHHHHHHHHh
Confidence 887 788888887766544
No 68
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=3.4e-16 Score=154.20 Aligned_cols=187 Identities=20% Similarity=0.233 Sum_probs=130.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce-------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF------- 117 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~------- 117 (343)
.+.+++++.+|++|+|++.+++.|...+... +.+.++||+||+|+|||++|+.+|+.+++.-
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 3457889999999999999999999988643 4456899999999999999999999886531
Q ss_pred -----------------EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 118 -----------------FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 118 -----------------~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
++++... ......++.++..+.. ....||||||+|.| .....+.
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L---------s~~A~NA 138 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML---------SKSAFNA 138 (709)
T ss_pred cccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc---------CHHHHHH
Confidence 1111111 1123345666654422 23469999999987 2345678
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~ 248 (343)
|++.|+.. ...+.+|++|+++..+.+.+++|+...-. ..+ .+...+....+ .++..+..|++.+.|
T Consensus 139 LLKtLEEP-----p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G- 212 (709)
T PRK08691 139 MLKTLEEP-----PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG- 212 (709)
T ss_pred HHHHHHhC-----CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-
Confidence 88888754 34678888889999999999997643321 222 33333333322 244457889999977
Q ss_pred CHHHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEIILI 263 (343)
Q Consensus 249 s~~di~~l~~~A~~~ 263 (343)
+.+++.++++.++.+
T Consensus 213 slRdAlnLLDqaia~ 227 (709)
T PRK08691 213 SMRDALSLLDQAIAL 227 (709)
T ss_pred CHHHHHHHHHHHHHh
Confidence 788888888877654
No 69
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=2.1e-16 Score=155.29 Aligned_cols=201 Identities=19% Similarity=0.248 Sum_probs=129.4
Q ss_pred hccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---------
Q psy7809 43 EKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH--------- 113 (343)
Q Consensus 43 ~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l--------- 113 (343)
..++.+++++.+|++++|++..++.+...+.. ..+.++||+||||||||++|+++...+
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~ 119 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK 119 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC
Confidence 45677888999999999999999998865432 345689999999999999999997643
Q ss_pred -CCceEEEcCCccc--cc-----cccchHHHH---HHHHH----------HHHHcCCcEEEEcccccccCCCCchhhhHH
Q psy7809 114 -GSTFFNVLPSSLT--SK-----HYGESEKLV---RALFE----------TARARAPAVIFIDEVDAFCSGSREHEATRR 172 (343)
Q Consensus 114 -~~~~~~v~~~~l~--~~-----~~~~~~~~i---~~~~~----------~a~~~~p~il~iDeid~l~~~~~~~~~~~~ 172 (343)
+.+|+.++|.... .. ..+.....+ ...|. .......++|||||+|.|. ..
T Consensus 120 ~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~---------~~ 190 (531)
T TIGR02902 120 EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH---------PV 190 (531)
T ss_pred CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC---------HH
Confidence 3578999886321 10 000000000 00000 0111234799999999883 34
Q ss_pred HHHHHhhhcccC--------CC----------------CCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHH
Q psy7809 173 VRCELLSHMDGV--------GT----------------GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQ 221 (343)
Q Consensus 173 ~~~~ll~~l~~~--------~~----------------~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~ 221 (343)
.++.|+..|+.- .. ..+.+..+|++|++.++.+++++++|+..... ...
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHH
Confidence 455566555421 00 00112245667778899999999998754433 667
Q ss_pred HHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809 222 IIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 222 il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~ 266 (343)
|++..+++... .++..++.|+..+. +++++.++++.|...|..
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh
Confidence 77777765532 23444666776663 789999999998877653
No 70
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-16 Score=153.63 Aligned_cols=184 Identities=23% Similarity=0.248 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCCCC
Q psy7809 20 KPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPW 89 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~ 89 (343)
++-+....++++.+.-+.+.+.+..-.|.......+ .|..|++++|+++.+++........ ..+
T Consensus 277 ~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~------~kG 350 (782)
T COG0466 277 KKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK------LKG 350 (782)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc------CCC
Confidence 333445567777777788888777666666555444 4789999999999999976543322 233
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc---------cccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT---------SKHYGESEKLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
.-++|+||||+|||+|++.||+.++..|+.++...+. ..|+|.+...+-+-...+....| +++|||||++
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm 429 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKM 429 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhc
Confidence 5688999999999999999999999999999876554 34788888888788888888776 8899999999
Q ss_pred cCCCCchhhhHHHHHHHhhhcc---------cCCCCC-CCCCEEEEEecCCCCCCCHHHhccccC
Q psy7809 161 CSGSREHEATRRVRCELLSHMD---------GVGTGS-GDKGVLVLAATNHPWDLDEALKRRFEK 215 (343)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~-~~~~v~vI~ttn~~~~l~~~l~~rf~~ 215 (343)
...-.+...+ +|++.|| .+-... .-+.|+||+|+|..+.++.+|++|++.
T Consensus 430 ~ss~rGDPaS-----ALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEi 489 (782)
T COG0466 430 GSSFRGDPAS-----ALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEV 489 (782)
T ss_pred cCCCCCChHH-----HHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceee
Confidence 8754433333 5666655 111111 134899999999999999999998764
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=6.9e-16 Score=156.02 Aligned_cols=206 Identities=22% Similarity=0.251 Sum_probs=143.8
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---- 113 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---- 113 (343)
..+.....+...-..-.++.++|.+...+.+.+.+.. ....++||+||||||||++|+.+|...
T Consensus 168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~ 235 (758)
T PRK11034 168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_pred HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4455555555555566788999999999988887754 234678999999999999999999864
Q ss_pred ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809 114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG 185 (343)
Q Consensus 114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~ 185 (343)
+..++.++...+. ..+.|+.+..++.++..+....++||||||+|.|++.+........+.+.|...+.
T Consensus 236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--- 312 (758)
T PRK11034 236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--- 312 (758)
T ss_pred CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh---
Confidence 4556666655555 35677888889999998888888999999999998754322222233333433332
Q ss_pred CCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcCCCCCCccc-----HHHHHHHccC
Q psy7809 186 TGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVD-----VATLSKQLIG 247 (343)
Q Consensus 186 ~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~-----~~~la~~t~g 247 (343)
...+.+|++|+.++ ..|+++.|||+. |. +..||+.+...+....++. +...+..+..
T Consensus 313 ----~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~-I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r 387 (758)
T PRK11034 313 ----SGKIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_pred ----CCCeEEEecCChHHHHHHhhccHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence 23789999999764 579999999974 44 7788887766553333333 3444444544
Q ss_pred C-----CHHHHHHHHHHHHHH
Q psy7809 248 Y-----SGSDIRDLCQEIILI 263 (343)
Q Consensus 248 ~-----s~~di~~l~~~A~~~ 263 (343)
| -|....++++.|+..
T Consensus 388 yi~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 388 YINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred cccCccChHHHHHHHHHHHHh
Confidence 4 455677888877764
No 72
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7.7e-16 Score=150.85 Aligned_cols=186 Identities=20% Similarity=0.244 Sum_probs=126.4
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 446788899999999999999999888643 344568999999999999999999998653
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
+++++... ......++.+...+.. ....|+||||+|.|. ....+.|
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls---------~~a~naL 139 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS---------KSAFNAM 139 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC---------HHHHHHH
Confidence 12221110 1123345666655532 224599999999883 3457788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHh---hhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIG---LCLGEIRK-DPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~---~~~~~~~~-~~~~~~~~la~~t~g~s 249 (343)
++.++.. +..+++|++|++++.+.+.+++|+...-. ..+|.. ..+..... .++..+..|+..+.| +
T Consensus 140 LK~LEep-----p~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-s 213 (527)
T PRK14969 140 LKTLEEP-----PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-S 213 (527)
T ss_pred HHHHhCC-----CCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988764 34678888888888888888886533222 333332 22222222 234456788888877 6
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIILI 263 (343)
Q Consensus 250 ~~di~~l~~~A~~~ 263 (343)
.+++.++++.|+..
T Consensus 214 lr~al~lldqai~~ 227 (527)
T PRK14969 214 MRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888888776643
No 73
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.67 E-value=2.4e-16 Score=151.11 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=137.2
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce-EE----
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-FN---- 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-~~---- 119 (343)
.+-+++++..|+|++|++.+.+.|...+..- +-..+.||.||.|+|||++||.+|+.+++.- ..
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC 73 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPC 73 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcc
Confidence 3457899999999999999999999988754 3446789999999999999999999987642 10
Q ss_pred ---EcCCccccc-cc---------cchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 120 ---VLPSSLTSK-HY---------GESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 120 ---v~~~~l~~~-~~---------~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
..|.++... ++ ...-+.++.+.+.+.. ..+.|++|||+|.| +....+.|++.++
T Consensus 74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML---------S~~afNALLKTLE 144 (515)
T COG2812 74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML---------SKQAFNALLKTLE 144 (515)
T ss_pred hhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh---------hHHHHHHHhcccc
Confidence 011111111 00 1112335555554432 33569999999877 6688999999998
Q ss_pred cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHh---hhhcCCC-CCCcccHHHHHHHccCCCHHHHH
Q psy7809 183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIG---LCLGEIR-KDPNVDVATLSKQLIGYSGSDIR 254 (343)
Q Consensus 183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~---~~~~~~~-~~~~~~~~~la~~t~g~s~~di~ 254 (343)
.- +..|++|.+|..++.+++.++||+.+.-. ...|.. ..+.... ...+..+..+|+.++| |.+|..
T Consensus 145 EP-----P~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 EP-----PSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred cC-----ccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 44 67899999999999999999997654433 333322 2222222 2344557789999988 789999
Q ss_pred HHHHHHHHHH
Q psy7809 255 DLCQEIILIA 264 (343)
Q Consensus 255 ~l~~~A~~~a 264 (343)
.+++.|....
T Consensus 219 slLDq~i~~~ 228 (515)
T COG2812 219 SLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHcc
Confidence 9999888774
No 74
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1e-15 Score=155.93 Aligned_cols=184 Identities=17% Similarity=0.141 Sum_probs=122.9
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.||+.+.+.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 457899999999999999999999888642 344568999999999999999999998652
Q ss_pred -----------------eEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchhhhHHHHH
Q psy7809 117 -----------------FFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHEATRRVRC 175 (343)
Q Consensus 117 -----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 175 (343)
+++++.... .....++.+...+ ......|+||||+|.| .....+
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l---------t~~a~N 138 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV---------TPQGFN 138 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc---------CHHHHH
Confidence 122221110 0122233332222 2334569999999998 335677
Q ss_pred HHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HH---HHHhhhhcCCCC-CCcccHHHHHHHccC
Q psy7809 176 ELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PI---QIIGLCLGEIRK-DPNVDVATLSKQLIG 247 (343)
Q Consensus 176 ~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~---~il~~~~~~~~~-~~~~~~~~la~~t~g 247 (343)
.|++.|+.. ...++||++|+.++.|.+.|++|+...-+ .. .+|...+....+ ..+..+..|+..+.|
T Consensus 139 aLLK~LEEp-----P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEP-----PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999865 34678888888888899999997543322 22 233443333322 234446677778766
Q ss_pred CCHHHHHHHHHHHH
Q psy7809 248 YSGSDIRDLCQEII 261 (343)
Q Consensus 248 ~s~~di~~l~~~A~ 261 (343)
+.+++.+++++.+
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 6677666666544
No 75
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.67 E-value=2e-15 Score=144.65 Aligned_cols=179 Identities=22% Similarity=0.333 Sum_probs=117.0
Q ss_pred cccCCCCCCCcccccHHHHHH---HHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQI---FKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
.++.++.+|++++|++++... |...+.. ....+++|+||||||||++|+++|+.++..++.+++.
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 456778899999999998666 7776643 2345899999999999999999999999999998875
Q ss_pred ccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 124 SLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
... ...++.++..+. .....||||||+|.+. ......|+..++. ..+++|++|
T Consensus 71 ~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~---------~~~q~~LL~~le~-------~~iilI~at 127 (413)
T PRK13342 71 TSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN---------KAQQDALLPHVED-------GTITLIGAT 127 (413)
T ss_pred ccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC---------HHHHHHHHHHhhc-------CcEEEEEeC
Confidence 321 223444444442 2245799999999883 2334566666652 246666654
Q ss_pred C-C-CCCCCHHHhccccCcch-------HHHHHhhhhcCC--C--CCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 200 N-H-PWDLDEALKRRFEKRIS-------PIQIIGLCLGEI--R--KDPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 200 n-~-~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~--~--~~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
+ . ...+++++++|+..... ...+++..+... . ...+..+..+++.+.| ..+.+.++++.+.
T Consensus 128 t~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 128 TENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3 3 34788999998733222 334444443321 1 1233446677887755 4566666666553
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=99.67 E-value=2.8e-15 Score=138.89 Aligned_cols=181 Identities=18% Similarity=0.141 Sum_probs=116.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~ 119 (343)
++.+++.+.+|++++|++++++.|..++... ...++||+||||||||++|+++|+++.. .+++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 3678899999999999999999998876532 2346999999999999999999999732 3555
Q ss_pred EcCCccccccccchHHHHHHHHHHH-HH------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 120 VLPSSLTSKHYGESEKLVRALFETA-RA------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~~i~~~~~~a-~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
++.++..+. ..++...... .. ..+.|++|||+|.+.. ...+.|+..++.+. ..
T Consensus 70 ln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------~aq~aL~~~lE~~~-----~~ 129 (319)
T PLN03025 70 LNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------GAQQALRRTMEIYS-----NT 129 (319)
T ss_pred ecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------HHHHHHHHHHhccc-----CC
Confidence 555443221 1233322211 11 2356999999999832 33556677776442 24
Q ss_pred EEEEEecCCCCCCCHHHhccccCc-ch------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKR-IS------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQ 258 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~-i~------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~ 258 (343)
..+|.++|..+.+.+++++|+... +. ....++..+.... ..++..+..++..+.| ..+.+.+.++
T Consensus 130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 557778888888989999976422 11 3334444443322 2244557778877765 3444444444
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.7e-15 Score=148.91 Aligned_cols=185 Identities=16% Similarity=0.148 Sum_probs=123.7
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------- 116 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------- 116 (343)
.+++.+.+|++|+|++.+++.|...+... ..++.+||+||+|||||++|+++|+.+.+.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 46788999999999999999999988642 344568999999999999999999988642
Q ss_pred ----------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
+++++.... .....++.+...+. .....|+||||+|.|- ....+.
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt---------~~A~NA 137 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT---------TAGFNA 137 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC---------HHHHHH
Confidence 222221110 01223444433332 2234699999999883 346778
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~ 248 (343)
|++.|+.. +..+++|++|+.++.+.+.+++|+...-. ..+ .+...+..... .++..+..++..+.|
T Consensus 138 LLK~LEEp-----p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEEP-----PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhcC-----CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 89999864 44788888888889999999987432221 222 33333333322 234456677787766
Q ss_pred CHHHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEIILI 263 (343)
Q Consensus 249 s~~di~~l~~~A~~~ 263 (343)
+.+++.++++.++..
T Consensus 212 dlR~aln~Ldql~~~ 226 (584)
T PRK14952 212 SPRDTLSVLDQLLAG 226 (584)
T ss_pred CHHHHHHHHHHHHhc
Confidence 677777777765443
No 78
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=1.7e-15 Score=142.92 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=119.4
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce----------------
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF---------------- 117 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~---------------- 117 (343)
.|++|+|++.+++.|...+.........+ ....++++||+||+|+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 58999999999999999998653221111 113567899999999999999999999875531
Q ss_pred -------EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809 118 -------FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 118 -------~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
+.+.+.. .......++.++..+.. ....|+||||+|.+. ....+.|++.|+..
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~---------~~aanaLLk~LEep-- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT---------ERAANALLKAVEEP-- 144 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC---------HHHHHHHHHHhhcC--
Confidence 1222111 01123346667666643 234599999999993 23457888888754
Q ss_pred CCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH
Q psy7809 187 GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD 255 (343)
Q Consensus 187 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~ 255 (343)
+.++++|.+|++++.+.++++||+...-. ..++...+.+.... +...+..++..+.|..+..+.-
T Consensus 145 ---~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 ---PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 33556666667799999999998753333 55555554433332 3455678899999976655543
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.9e-15 Score=147.34 Aligned_cols=186 Identities=16% Similarity=0.201 Sum_probs=123.9
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++++.+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 456788899999999999999999877642 344568999999999999999999988641
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
+++++...- .....++.+...+.. ....|+||||+|.+ .....+.|
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l---------s~~a~naL 139 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML---------SKQSFNAL 139 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc---------cHHHHHHH
Confidence 222221110 111223444443322 23469999999988 33567788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIR-KDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~-~~~~~~~~~la~~t~g~s 249 (343)
++.|+.. +..+.+|++|+++..+.+.+++|+...-. ..+| ++..+.... ..++..+..|+..+.| +
T Consensus 140 LK~LEep-----p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 140 LKTLEEP-----PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred HHHHhcC-----CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988854 34677777778888888889887633222 2222 333333322 2345557788888876 6
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIILI 263 (343)
Q Consensus 250 ~~di~~l~~~A~~~ 263 (343)
.+++.++++.++..
T Consensus 214 lR~alnlLek~i~~ 227 (546)
T PRK14957 214 LRDALSLLDQAISF 227 (546)
T ss_pred HHHHHHHHHHHHHh
Confidence 78777777766543
No 80
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.2e-15 Score=144.23 Aligned_cols=211 Identities=40% Similarity=0.606 Sum_probs=177.6
Q ss_pred cChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEc
Q psy7809 77 LMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFID 155 (343)
Q Consensus 77 ~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iD 155 (343)
.++..+.. +..++.+++++||||+|||.++++++.+ +..+..++......++.+.....+..+|..+....|+++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 34444443 3588899999999999999999999999 766688888999999999999999999999999999999999
Q ss_pred ccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHH
Q psy7809 156 EVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQII 223 (343)
Q Consensus 156 eid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il 223 (343)
++|.+.+... .......+...++..+++.. . .. +++++.+|.+..+++++++ ||+..+. +.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~-~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 84 EIDALAPKRSSDQGEVERRVVAQLLALMDGLK--R-GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred hhhhcccCccccccchhhHHHHHHHHhccccc--C-Cc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 9999998533 34566788999999999887 2 44 8889999999999999998 8887776 77888
Q ss_pred hhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCC
Q psy7809 224 GLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLG 303 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
...........+.++..++..+.||++.++..++..+...+.++... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-------------------------------~~ 208 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-------------------------------LV 208 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc-------------------------------cC
Confidence 88887777667899999999999999999999999999999988631 01
Q ss_pred CCcccccHHHHHHHHHhcCC
Q psy7809 304 SDRIVLNRSHFERAKEKCRK 323 (343)
Q Consensus 304 ~~~~~lt~~df~~Al~~~~p 323 (343)
...+.++.+||.++++.+.|
T Consensus 209 ~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 209 GEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred cccccccHHHHHHHHHhcCc
Confidence 12234899999999999865
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=7.8e-15 Score=145.98 Aligned_cols=191 Identities=20% Similarity=0.235 Sum_probs=127.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE---c
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV---L 121 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v---~ 121 (343)
.+.+++++.+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.+.+.-... .
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 3457889999999999999999999888643 3456789999999999999999999886531100 0
Q ss_pred CC----------cccc-cccc-chHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809 122 PS----------SLTS-KHYG-ESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG 185 (343)
Q Consensus 122 ~~----------~l~~-~~~~-~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~ 185 (343)
|. ++.. ...+ .....++.+...+.. ....|++|||+|.|. ....+.|++.|+..
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT---------~~A~NALLKtLEEP- 145 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS---------KSAFNALLKTLEEP- 145 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC---------HHHHHHHHHHhhcC-
Confidence 10 0000 0000 123346666655543 234699999999883 24677889988854
Q ss_pred CCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHH
Q psy7809 186 TGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLC 257 (343)
Q Consensus 186 ~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~ 257 (343)
+..+++|++|+.++.|.+.+++|+...-. ..++ ++..+..... ..+..+..+|..+.| +.+++..++
T Consensus 146 ----P~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL 220 (725)
T PRK07133 146 ----PKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA 220 (725)
T ss_pred ----CCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 44678888888999999999998753322 2232 2322222222 233447788888877 677777777
Q ss_pred HHHH
Q psy7809 258 QEII 261 (343)
Q Consensus 258 ~~A~ 261 (343)
+.+.
T Consensus 221 ekl~ 224 (725)
T PRK07133 221 EQVS 224 (725)
T ss_pred HHHH
Confidence 6654
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.8e-15 Score=146.42 Aligned_cols=185 Identities=17% Similarity=0.191 Sum_probs=124.6
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------- 116 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------- 116 (343)
.+.+++++.+|++++|++.+++.|...+... ..++++||+||+|+|||++|+++|+.+.+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4567889999999999999999999877532 345679999999999999999999988541
Q ss_pred ----------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
++.++... ......++.+...+.. ....|++|||+|.|- ....+.
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt---------~~A~Na 138 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS---------TSAWNA 138 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC---------HHHHHH
Confidence 22222211 0112235555544432 224599999999882 235678
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCC-CCCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIR-KDPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~-~~~~~~~~~la~~t~g~ 248 (343)
|+..|+.. +..+++|++|+.+..+.+++++|+...-. ..+ .++..+.... ..++..+..++..+.|
T Consensus 139 LLKtLEEP-----p~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G- 212 (605)
T PRK05896 139 LLKTLEEP-----PKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG- 212 (605)
T ss_pred HHHHHHhC-----CCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888754 34678888888899999999997654322 222 3333332322 1234457788888877
Q ss_pred CHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEII 261 (343)
Q Consensus 249 s~~di~~l~~~A~ 261 (343)
+.+++.++++.+.
T Consensus 213 dlR~AlnlLekL~ 225 (605)
T PRK05896 213 SLRDGLSILDQLS 225 (605)
T ss_pred cHHHHHHHHHHHH
Confidence 6777767666543
No 83
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=2.4e-15 Score=146.83 Aligned_cols=186 Identities=19% Similarity=0.270 Sum_probs=123.9
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+++++.+.+|++++|++.+++.|..++.... .+ .++.++||+||||||||++|+++|++++.+++++++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~-------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWL-------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 35788999999999999999999999885432 11 34678999999999999999999999999999998876
Q ss_pred cccccccchHHHHHHHHHHHHH------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 125 LTSKHYGESEKLVRALFETARA------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
.... ..+..+...+.. ..+.||+|||+|.+.... .......|+..++.. +..+|++
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-----d~~~~~aL~~~l~~~-------~~~iIli 136 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-----DRGGARAILELIKKA-------KQPIILT 136 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-----chhHHHHHHHHHHcC-------CCCEEEe
Confidence 4421 223333333322 246799999999985421 112344566665521 3457778
Q ss_pred cCCCCCCCH-HHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 199 TNHPWDLDE-ALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 199 tn~~~~l~~-~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
+|.+..+.. .+++|+...-. ...+++..+..... .++..++.|++.+.| |++.+++..
T Consensus 137 ~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 137 ANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred ccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 898888876 67665332211 44455555544322 234557778877654 666555443
No 84
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3e-15 Score=146.87 Aligned_cols=183 Identities=20% Similarity=0.202 Sum_probs=120.5
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------- 116 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------- 116 (343)
.+.+++.+.+|++|+|++.+++.|...+... +-+.++||+||+|+|||++|+.+|+.+.+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 4567889999999999999999999888642 234689999999999999999999998753
Q ss_pred ----------------eEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
+++++... ......++.+...+ ......||||||+|.|. ....+.
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt---------~~a~na 138 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT---------REAFNA 138 (624)
T ss_pred cccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC---------HHHHHH
Confidence 23332211 00112233332222 12234699999999883 345678
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~ 248 (343)
|++.|+.. ...+++|++|+.+..+.+.+++|+...-. ..+ +|+..+..... .++..+..|++.+.|
T Consensus 139 LLk~LEEP-----~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G- 212 (624)
T PRK14959 139 LLKTLEEP-----PARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG- 212 (624)
T ss_pred HHHHhhcc-----CCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 33678888899888898899987643322 222 33333333222 344557788888876
Q ss_pred CHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQE 259 (343)
Q Consensus 249 s~~di~~l~~~ 259 (343)
+.+++.++++.
T Consensus 213 dlR~Al~lLeq 223 (624)
T PRK14959 213 SVRDSMSLLGQ 223 (624)
T ss_pred CHHHHHHHHHH
Confidence 45555555543
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.5e-15 Score=145.09 Aligned_cols=184 Identities=20% Similarity=0.257 Sum_probs=123.1
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|++|+|++.+++.|...+... ..+..+||+||||||||++|+++|+.+.+.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 347889999999999999999999888642 344567999999999999999999988531
Q ss_pred --------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809 117 --------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELL 178 (343)
Q Consensus 117 --------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll 178 (343)
++.++..+ ......++.+...+.. ..+.||+|||+|.+ ....++.|+
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l---------s~~a~naLL 137 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM---------SKSAFNALL 137 (504)
T ss_pred ChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc---------CHHHHHHHH
Confidence 33333321 1112334444333322 24569999999877 234567788
Q ss_pred hhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----H---HHHHhhhhcCCCC-CCcccHHHHHHHccCCCH
Q psy7809 179 SHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----P---IQIIGLCLGEIRK-DPNVDVATLSKQLIGYSG 250 (343)
Q Consensus 179 ~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r---~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~ 250 (343)
..++.. ...+++|.+++.+..+.+.+.+|+...-. . ...++..+..... .++..+..|+..+.| +.
T Consensus 138 k~LEep-----~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP-----PEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC-----CCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888754 33677888888889999999986542221 2 2333333333322 244557788888877 56
Q ss_pred HHHHHHHHHHH
Q psy7809 251 SDIRDLCQEII 261 (343)
Q Consensus 251 ~di~~l~~~A~ 261 (343)
+++.++++.++
T Consensus 212 R~aln~Lekl~ 222 (504)
T PRK14963 212 RDAESLLERLL 222 (504)
T ss_pred HHHHHHHHHHH
Confidence 77767666553
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.3e-15 Score=147.47 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=127.4
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|++++|++.+.+.|...+... ..++.+||+||+|||||++|+.+|+.+.+.
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 346788999999999999999999888642 345678999999999999999999987542
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
++.++... ......++.+...+.. ....|+||||+|.|. ....+.|
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt---------~~a~naL 139 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS---------TGAFNAL 139 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------HHHHHHH
Confidence 23332211 1223446666655543 234599999999883 2457788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----H---HHHHhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----P---IQIIGLCLGEIRK-DPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r---~~il~~~~~~~~~-~~~~~~~~la~~t~g~s 249 (343)
++.++.. +..+++|++|+.++.+.+.+++|+...-. . ...++..+..... .++..+..+|..+.| +
T Consensus 140 LKtLEep-----p~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP-----PAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC-----CCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888754 34678888888899999999986543322 2 2333443433322 234557788888877 6
Q ss_pred HHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIIL 262 (343)
Q Consensus 250 ~~di~~l~~~A~~ 262 (343)
.++..++++.+..
T Consensus 214 ~R~al~~Ldq~~~ 226 (559)
T PRK05563 214 MRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776544
No 87
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3e-15 Score=148.31 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=126.2
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|++|+|++.+++.|...+... ..++.+|||||+|+|||++|+++|+.+.+.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 346788999999999999999999887642 345678999999999999999999998642
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
+++++..+ ......++.+...+... ...|+||||+|.|. ....+.|
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt---------~~a~naL 139 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS---------TNAFNAL 139 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC---------HHHHHHH
Confidence 22222111 11223455555544321 23599999999883 3457789
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh---hhcCCC-CCCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL---CLGEIR-KDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~---~~~~~~-~~~~~~~~~la~~t~g~s 249 (343)
++.|+.. +..+++|++|+.++.|.+.+++|+...-. ..+|..+ .+.... ..++..+..|+..+.| +
T Consensus 140 Lk~LEep-----p~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP-----PPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC-----CCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 9999854 44788888889999999999997643222 3333332 222222 2345557788888877 5
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIILI 263 (343)
Q Consensus 250 ~~di~~l~~~A~~~ 263 (343)
.+++.++++.++.+
T Consensus 214 lr~al~~Ldqliay 227 (576)
T PRK14965 214 MRDSLSTLDQVLAF 227 (576)
T ss_pred HHHHHHHHHHHHHh
Confidence 67776666655433
No 88
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.64 E-value=2.4e-15 Score=140.18 Aligned_cols=88 Identities=31% Similarity=0.386 Sum_probs=63.0
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cccc-c
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYG-E 132 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~-~ 132 (343)
-|+|++++++.+...+.....+..+.... ...|.++||+||||||||++|+++|..++.+|+.+++..+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 48999999999987776532222221111 234689999999999999999999999999999999887763 5555 3
Q ss_pred hHHHHHHHHHHH
Q psy7809 133 SEKLVRALFETA 144 (343)
Q Consensus 133 ~~~~i~~~~~~a 144 (343)
.+..++.+|..+
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 89
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.64 E-value=6.2e-15 Score=150.16 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=148.3
Q ss_pred CCCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCCCCceE
Q psy7809 23 TGVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGI 92 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~v 92 (343)
+..+...++......+.+.+..-.|.+.....+ +++.|++.+|+++.+++........ ..+..+
T Consensus 279 ~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i 352 (784)
T PRK10787 279 KMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK------IKGPIL 352 (784)
T ss_pred HhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc------CCCceE
Confidence 445677778888888888777666666555444 3589999999999988874322111 234569
Q ss_pred EEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc---------ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC
Q psy7809 93 LLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS---------KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG 163 (343)
Q Consensus 93 ll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~---------~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~ 163 (343)
+|+||||+|||++++.+|..++.+++.+++..... .+.|.....+...+..+.... .||+|||+|.+...
T Consensus 353 ~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~ 431 (784)
T PRK10787 353 CLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSD 431 (784)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccc
Confidence 99999999999999999999999999887665432 234444344444444443334 48999999999653
Q ss_pred CCchhhhHHHHHHHhhhccc---------CCCC-CCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhh
Q psy7809 164 SREHEATRRVRCELLSHMDG---------VGTG-SGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLC 226 (343)
Q Consensus 164 ~~~~~~~~~~~~~ll~~l~~---------~~~~-~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~ 226 (343)
.+. .....|+..++. +... -.-+++++|+|+|.. .+++++++||..... ..+|.+.+
T Consensus 432 ~~g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~ 505 (784)
T PRK10787 432 MRG-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRH 505 (784)
T ss_pred cCC-----CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHh
Confidence 221 123456665552 1100 012589999999987 599999999864332 44455444
Q ss_pred hc-----CCCCC------CcccHHHHHH-HccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 227 LG-----EIRKD------PNVDVATLSK-QLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 227 ~~-----~~~~~------~~~~~~~la~-~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
+. +.... ++.-+..+++ .+..+-.+.|+.++++.+..++.+..
T Consensus 506 L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~ 560 (784)
T PRK10787 506 LLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLL 560 (784)
T ss_pred hhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHH
Confidence 42 11111 1222444443 22333457788888877766666654
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.64 E-value=7.7e-15 Score=142.17 Aligned_cols=194 Identities=18% Similarity=0.287 Sum_probs=120.4
Q ss_pred CCCCCCCccc-cc--HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809 50 DTGVGWDDIA-GL--DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL 121 (343)
Q Consensus 50 ~~~~~~~~l~-G~--~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~ 121 (343)
.+..+|++++ |. ..+...+..+...+. ...++++||||+|+|||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~----------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG----------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC----------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4566888854 43 234555555443321 234679999999999999999999987 45688888
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
+.++...+...........|... ...+++|+|||+|.+.+... ....|+..++...... ..+||++...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~~-------~~~~l~~~~n~l~~~~---~~iiits~~~ 254 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKER-------TQEEFFHTFNALHEAG---KQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCHH-------HHHHHHHHHHHHHHCC---CcEEEECCCC
Confidence 87766543332221111122222 22468999999999854221 1223333333322211 3456655555
Q ss_pred CCC---CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 202 PWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 202 ~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
|.. +++.+.+||..-+. |..|++..+..... .++..++.||..+.| +.++|..++......+.
T Consensus 255 p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 255 PKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 554 67889999965322 88899888875432 345558899999877 78888877776655543
No 91
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=5.5e-15 Score=152.12 Aligned_cols=207 Identities=18% Similarity=0.196 Sum_probs=145.3
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG--- 114 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~--- 114 (343)
..+.....+.....+-.+++++|+++.++++.+.+.. ....+++|+||||||||++|+.+|..+.
T Consensus 169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~ 236 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGD 236 (852)
T ss_pred hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4555556666777788999999999988888776654 2345889999999999999999998862
Q ss_pred -------CceEEEcCCccc--cccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 115 -------STFFNVLPSSLT--SKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 115 -------~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
.+++.++...+. ..+.|+.+..++.++..+.. ..+.||||||+|.+++.+..... ....+.|...+.
T Consensus 237 v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~~n~Lkp~l~-- 313 (852)
T TIGR03345 237 VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GDAANLLKPALA-- 313 (852)
T ss_pred CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-ccHHHHhhHHhh--
Confidence 457777777765 35778888999999998865 35789999999999874322111 122233444442
Q ss_pred CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcCCC-----CCCcccHHHHHHHccC
Q psy7809 185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGEIR-----KDPNVDVATLSKQLIG 247 (343)
Q Consensus 185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-----~~~~~~~~~la~~t~g 247 (343)
.+.+.+||+|+..+ .+|+++.|||..... +..||+.+..... ...+..+..++..+.+
T Consensus 314 -----~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 314 -----RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred -----CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 33688999998643 489999999964322 6677655554321 1256668889999988
Q ss_pred CC-----HHHHHHHHHHHHHHH
Q psy7809 248 YS-----GSDIRDLCQEIILIA 264 (343)
Q Consensus 248 ~s-----~~di~~l~~~A~~~a 264 (343)
|- |.---++++.|+...
T Consensus 389 yi~~r~LPDKAIdlldea~a~~ 410 (852)
T TIGR03345 389 YIPGRQLPDKAVSLLDTACARV 410 (852)
T ss_pred ccccccCccHHHHHHHHHHHHH
Confidence 83 333346667666543
No 92
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=8.3e-15 Score=142.17 Aligned_cols=187 Identities=21% Similarity=0.202 Sum_probs=126.7
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++++.+|++++|++.+++.|...+... ..++.+|||||+|+|||++|+++|+.+.+.
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 456889999999999999999999887532 345567999999999999999999987421
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
++.++... ......++.+...... ....|++|||+|.| .....+.|
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L---------t~~A~NAL 137 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML---------TKEAFNAL 137 (535)
T ss_pred ccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC---------CHHHHHHH
Confidence 22222111 0012345554443321 12359999999988 34567788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh---hhcCCC-CCCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL---CLGEIR-KDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~---~~~~~~-~~~~~~~~~la~~t~g~s 249 (343)
++.|+.. +..+.+|.+|+++..+.+++++|+...-. ..++..+ .+.... ..++..+..|+..+.| +
T Consensus 138 LK~LEEp-----p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEP-----PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhc-----CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9988865 33677777888889999999997542222 3333222 222222 2245567789998877 7
Q ss_pred HHHHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIILIA 264 (343)
Q Consensus 250 ~~di~~l~~~A~~~a 264 (343)
.+++.++++.|+..+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888877654
No 93
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.7e-15 Score=142.24 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=122.6
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce-E-----
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-F----- 118 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-~----- 118 (343)
++.+++++.+|++++|++.+.+.|...+... ..++.+|||||+|+|||++|+.+|+.+++.- .
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 4557788999999999999999999888542 3445688999999999999999999886410 0
Q ss_pred --EEcCC--------ccc--cccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 119 --NVLPS--------SLT--SKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 119 --~v~~~--------~l~--~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
..+|. ++. ..........++.+...+.. ..+.|++|||+|.+. ....+.|+..++
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt---------~~a~naLLk~LE 144 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT---------KEAFNALLKTLE 144 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC---------HHHHHHHHHHHh
Confidence 00110 010 00000112234454444432 234699999999883 234667888887
Q ss_pred cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809 183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR 254 (343)
Q Consensus 183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~ 254 (343)
.. +..+++|.+|+.++.+.+++.+|+...-. ....++..+..... .++..+..|+..+.| +.+++.
T Consensus 145 ep-----p~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al 218 (486)
T PRK14953 145 EP-----PPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAA 218 (486)
T ss_pred cC-----CCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 54 33566666777788888899887653222 33344444444332 234456788888876 677777
Q ss_pred HHHHHHHH
Q psy7809 255 DLCQEIIL 262 (343)
Q Consensus 255 ~l~~~A~~ 262 (343)
++++.+..
T Consensus 219 ~~Ldkl~~ 226 (486)
T PRK14953 219 SLLDQAST 226 (486)
T ss_pred HHHHHHHH
Confidence 77776653
No 94
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=4.2e-15 Score=153.35 Aligned_cols=173 Identities=21% Similarity=0.268 Sum_probs=127.8
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---- 113 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---- 113 (343)
..+....++.....+-.++.++|++...+++.+.+.. ....+++|+||||||||++|+.+|..+
T Consensus 160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 227 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGE 227 (857)
T ss_pred HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 4555556666667778899999999988888877754 234578999999999999999999987
Q ss_pred ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
+.+++.++...+. .++.|+.+..++.+|..+.. ..++||||||+|.|++.+.... .....+.|...+.
T Consensus 228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~~~~lkp~l~-- 304 (857)
T PRK10865 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPALA-- 304 (857)
T ss_pred CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhHHHHhcchhh--
Confidence 6788888887765 45778888889999987644 4678999999999986432221 1223333433332
Q ss_pred CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcCC
Q psy7809 185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGEI 230 (343)
Q Consensus 185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~~ 230 (343)
.+.+.+||+|+..+ .+|+++.|||+.... +..|++.+...+
T Consensus 305 -----~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 305 -----RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred -----cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhh
Confidence 34788999998876 489999999975443 666777665543
No 95
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.62 E-value=4.2e-15 Score=137.72 Aligned_cols=144 Identities=24% Similarity=0.198 Sum_probs=101.5
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
+.+++++.+|++++|++++++.+..++... ..+..+||+||||+|||+++++++++++.+++++++.+
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 568899999999999999999999887531 34456677999999999999999999999999998876
Q ss_pred ccccccchHHHHHHHHHHHH-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809 126 TSKHYGESEKLVRALFETAR-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~ 204 (343)
.. .......+..+..... ...+.+|+|||+|.+.. ......|...++.. ..++.+|+++|.+..
T Consensus 79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~~L~~~le~~-----~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQRHLRSFMEAY-----SKNCSFIITANNKNG 143 (316)
T ss_pred -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHHHHHHHHHhc-----CCCceEEEEcCChhh
Confidence 21 2222222222211111 12467999999998722 11223344445543 235678889999999
Q ss_pred CCHHHhccccCc
Q psy7809 205 LDEALKRRFEKR 216 (343)
Q Consensus 205 l~~~l~~rf~~~ 216 (343)
+.+++++||...
T Consensus 144 l~~~l~sR~~~i 155 (316)
T PHA02544 144 IIEPLRSRCRVI 155 (316)
T ss_pred chHHHHhhceEE
Confidence 999999987543
No 96
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.62 E-value=2.3e-14 Score=137.21 Aligned_cols=193 Identities=17% Similarity=0.296 Sum_probs=118.9
Q ss_pred CCCCCCCc-ccccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809 50 DTGVGWDD-IAGLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL 121 (343)
Q Consensus 50 ~~~~~~~~-l~G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~ 121 (343)
.+..+|++ ++|... +...+..+...+ ...+.+++||||+|+|||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 35678888 446433 333444443322 1234579999999999999999999887 56788888
Q ss_pred CCccccccccchHH-HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 122 PSSLTSKHYGESEK-LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 122 ~~~l~~~~~~~~~~-~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
+.++.......... .+..+.... ..+++|+|||+|.+.+... ....|+..++...... ..+||++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~~-------~~~~l~~~~n~~~~~~---~~iiits~~ 241 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKER-------TQEEFFHTFNALHENG---KQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCHH-------HHHHHHHHHHHHHHCC---CCEEEecCC
Confidence 87765433222111 111222222 2357999999999864221 1223333333222211 345555555
Q ss_pred CCCC---CCHHHhccccCcc--h--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 201 HPWD---LDEALKRRFEKRI--S--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 201 ~~~~---l~~~l~~rf~~~i--~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
.|.. +++.+.+||...+ . |..|++..+..... .++..++.||....+ +.++|..++.+....|.
T Consensus 242 ~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 242 PPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred CHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 5554 5688899997532 2 88999988876533 255567889999877 78888888877665554
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.62 E-value=8.8e-15 Score=137.72 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=124.4
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------- 116 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------- 116 (343)
.+.+++++.+|++++|++.+++.|...+... ..++.+||+||||+|||++|+++++.+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3456788999999999999999999877532 345678999999999999999999987532
Q ss_pred ----------------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
++.++... ......++.++..+... ...|++|||+|.+. ....+.
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~---------~~~~~~ 136 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS---------KSAFNA 136 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC---------HHHHHH
Confidence 22222210 11223456666655432 23599999999883 234667
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~ 248 (343)
|++.++.. +..+++|+++++++.+.+.+++|+...-. ...+++..+..... .++..+..++..+.|
T Consensus 137 Ll~~le~~-----~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEP-----PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCC-----ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77877653 33677788888888888899987643222 34445544444332 234556778888866
Q ss_pred CHHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEIIL 262 (343)
Q Consensus 249 s~~di~~l~~~A~~ 262 (343)
+.+.+.+.++.+..
T Consensus 211 ~~~~a~~~lekl~~ 224 (355)
T TIGR02397 211 SLRDALSLLDQLIS 224 (355)
T ss_pred ChHHHHHHHHHHHh
Confidence 66777666665544
No 98
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.6e-14 Score=142.89 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=128.0
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc--
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-- 121 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~-- 121 (343)
+.+.+++.+.+|++|+|++.+++.|...+... +.+.++||+||+|+|||++|+.+|+.+.+.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~ 80 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG 80 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence 34557889999999999999999999888642 45678999999999999999999999875432111
Q ss_pred -----------C--------Ccccccc--ccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 122 -----------P--------SSLTSKH--YGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 122 -----------~--------~~l~~~~--~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
| .++.... .......++.++..+... ...|+||||+|.|. ....+.
T Consensus 81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls---------~~a~na 151 (598)
T PRK09111 81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS---------TAAFNA 151 (598)
T ss_pred CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC---------HHHHHH
Confidence 1 0110000 001133456666555432 34699999999882 345778
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCC-CCCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIR-KDPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~-~~~~~~~~~la~~t~g~ 248 (343)
|++.|+.. +..+.+|++|+.++.+.+.+++|+...-. ..+ .++..+.... ..++..++.|+..+.|
T Consensus 152 LLKtLEeP-----p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 152 LLKTLEEP-----PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHHHHhC-----CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888754 34677777888888888899987643222 223 2333333332 2234556778888877
Q ss_pred CHHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEIIL 262 (343)
Q Consensus 249 s~~di~~l~~~A~~ 262 (343)
+.+++.++++.++.
T Consensus 226 dlr~al~~Ldkli~ 239 (598)
T PRK09111 226 SVRDGLSLLDQAIA 239 (598)
T ss_pred CHHHHHHHHHHHHh
Confidence 67888777776543
No 99
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.6e-14 Score=142.15 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=124.4
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+-+++.+.+|++|+|++.+++.|...+... ..++.+|||||+|+|||++|+++|+.+.+.
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 346788999999999999999999888642 345679999999999999999999998652
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
++.++... ......++.+...+. .....|++|||+|.| .....+.|
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L---------s~~a~naL 139 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML---------SNSAFNAL 139 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc---------CHHHHHHH
Confidence 11111100 011233444443332 234569999999988 23467788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s 249 (343)
++.++.. +..+++|++|+.+..+.+++++|+...-. ....++..+.... ..++..+..||..+.| +
T Consensus 140 LK~LEep-----p~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEEP-----PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhccC-----CCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888753 44678888888888999999997653222 2233333332222 2345557788888877 6
Q ss_pred HHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIIL 262 (343)
Q Consensus 250 ~~di~~l~~~A~~ 262 (343)
.+++..+++.++.
T Consensus 214 lR~alslLdklis 226 (563)
T PRK06647 214 VRDAYTLFDQVVS 226 (563)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766543
No 100
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.60 E-value=4.4e-14 Score=133.47 Aligned_cols=195 Identities=20% Similarity=0.172 Sum_probs=118.4
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---------CceEEEcCCccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------STFFNVLPSSLT 126 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------~~~~~v~~~~l~ 126 (343)
++++|.++.++.|...+..... ...+.+++|+||||||||++++.+++++. ..+++++|....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 4789999999999888753211 13456799999999999999999998763 467888886543
Q ss_pred ccc---------c----------c-chHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809 127 SKH---------Y----------G-ESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG 185 (343)
Q Consensus 127 ~~~---------~----------~-~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~ 185 (343)
..+ . + .....+..++..... ..+.||+|||+|.+.... ..++..|+...+...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------DDLLYQLSRARSNGD 160 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------cHHHHhHhccccccC
Confidence 210 0 0 112233444444432 346799999999997321 124445544421111
Q ss_pred CCCCCCCEEEEEecCCCC---CCCHHHhcccc-Ccch--------HHHHHhhhhcCC---CCCCcccHHH---HHHHccC
Q psy7809 186 TGSGDKGVLVLAATNHPW---DLDEALKRRFE-KRIS--------PIQIIGLCLGEI---RKDPNVDVAT---LSKQLIG 247 (343)
Q Consensus 186 ~~~~~~~v~vI~ttn~~~---~l~~~l~~rf~-~~i~--------r~~il~~~~~~~---~~~~~~~~~~---la~~t~g 247 (343)
....++.+|+++|.++ .+++.+.+||. ..+. ..+|++..+... ....+..++. ++..+.|
T Consensus 161 --~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 161 --LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred --CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 1124788999999886 47788888875 2233 556666665421 1112222333 3444445
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy7809 248 YSGSDIRDLCQEIILIAARE 267 (343)
Q Consensus 248 ~s~~di~~l~~~A~~~a~~r 267 (343)
. .+...++|+.|...|..+
T Consensus 239 d-~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 239 D-ARKAIDLLRVAGEIAERE 257 (365)
T ss_pred C-HHHHHHHHHHHHHHHHHc
Confidence 3 455556788888777644
No 101
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=8e-15 Score=151.35 Aligned_cols=206 Identities=19% Similarity=0.194 Sum_probs=144.7
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---- 113 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---- 113 (343)
..+.+...+......-.++.++|.++.++++.+.+.. ...++++|+||||||||++|+.+|.++
T Consensus 161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~ 228 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRD 228 (821)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4444555555556667799999999999999988864 345689999999999999999999886
Q ss_pred ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809 114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG 185 (343)
Q Consensus 114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~ 185 (343)
+.+++.++...+. ..|.|+.+..+..+++.+....++||||||+|.|++.+..... ..+.+.|...+.
T Consensus 229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~~a~lLkp~l~--- 304 (821)
T CHL00095 229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-IDAANILKPALA--- 304 (821)
T ss_pred CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-ccHHHHhHHHHh---
Confidence 3678999988776 4677888999999999998888899999999999874322111 123333333332
Q ss_pred CCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcC----CCC-CCcccHHHHHHHccCC
Q psy7809 186 TGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGE----IRK-DPNVDVATLSKQLIGY 248 (343)
Q Consensus 186 ~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~----~~~-~~~~~~~~la~~t~g~ 248 (343)
...+.+|++|+..+ ..++++.+||..... ...|++..... ..+ .++..+..++..+.+|
T Consensus 305 ----rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 305 ----RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred ----CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 23688899888763 478999999975332 44555543322 111 3455577888888888
Q ss_pred CH-----HHHHHHHHHHHHH
Q psy7809 249 SG-----SDIRDLCQEIILI 263 (343)
Q Consensus 249 s~-----~di~~l~~~A~~~ 263 (343)
.+ .---.+++.|+..
T Consensus 381 i~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 381 IADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred CccccCchHHHHHHHHHHHH
Confidence 53 2233555655543
No 102
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.60 E-value=7.1e-15 Score=137.14 Aligned_cols=88 Identities=30% Similarity=0.372 Sum_probs=62.4
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cccc-c
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYG-E 132 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~-~ 132 (343)
.|+|++++++.+...+.....+..+.... -..+.++||+||||||||++|+++|..++.+|+.+++..+.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 48999999999988775422111111111 123579999999999999999999999999999999987774 4666 3
Q ss_pred hHHHHHHHHHHH
Q psy7809 133 SEKLVRALFETA 144 (343)
Q Consensus 133 ~~~~i~~~~~~a 144 (343)
.+..++.+|..|
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 103
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1e-13 Score=137.88 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=123.8
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE----E
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN----V 120 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~----v 120 (343)
.+..++++..|++++|++.+++.|...+... +...++||+||+|+|||++|+++|+.+.+.... -
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE 73 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC
Confidence 4556788899999999999999999888643 234579999999999999999999998763110 0
Q ss_pred cCC--------------ccc--cccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhh
Q psy7809 121 LPS--------------SLT--SKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSH 180 (343)
Q Consensus 121 ~~~--------------~l~--~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~ 180 (343)
.|. ++. ..........++.++..+.. ....|+||||+|.|- ....+.|++.
T Consensus 74 ~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------~~a~naLLK~ 144 (620)
T PRK14948 74 PCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------TAAFNALLKT 144 (620)
T ss_pred CCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC---------HHHHHHHHHH
Confidence 010 010 00111233456676665543 234699999999882 3467788998
Q ss_pred cccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCC-CCCcccHHHHHHHccCCCHHH
Q psy7809 181 MDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIR-KDPNVDVATLSKQLIGYSGSD 252 (343)
Q Consensus 181 l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~-~~~~~~~~~la~~t~g~s~~d 252 (343)
++.. ...+++|++|++++.+.+.+++|+...-. ..++ +...+.+.. ......+..+++.+.| +.++
T Consensus 145 LEeP-----p~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~ 218 (620)
T PRK14948 145 LEEP-----PPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRD 218 (620)
T ss_pred HhcC-----CcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8853 34678888888888898999987644322 2222 223332321 1233457788888877 4566
Q ss_pred HHHHHHH
Q psy7809 253 IRDLCQE 259 (343)
Q Consensus 253 i~~l~~~ 259 (343)
+.++++.
T Consensus 219 A~~lLek 225 (620)
T PRK14948 219 AESLLDQ 225 (620)
T ss_pred HHHHHHH
Confidence 6555554
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=3.8e-14 Score=132.40 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=112.8
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEE
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNV 120 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v 120 (343)
+.+++.+.+|++++|++.+++.|..++... ...+++|+||||||||++|+++++++. .+++++
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 567788999999999999999999887532 223699999999999999999999884 346777
Q ss_pred cCCccccccc-------------cc-------hHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHH
Q psy7809 121 LPSSLTSKHY-------------GE-------SEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRC 175 (343)
Q Consensus 121 ~~~~l~~~~~-------------~~-------~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~ 175 (343)
++.++..... +. ....++.+....... .+.+|+|||+|.+.. ....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------~~~~ 143 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------DAQQ 143 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------HHHH
Confidence 7766532110 00 112233333333222 246999999998831 2334
Q ss_pred HHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccC
Q psy7809 176 ELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIG 247 (343)
Q Consensus 176 ~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g 247 (343)
.|...++.... ...+|.+++.+..+.+.+.+|+..... ...+++..+..... .++..+..|+..+.|
T Consensus 144 ~L~~~le~~~~-----~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 144 ALRRIMEQYSR-----TCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHhccC-----CCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55555554322 334555666666777888887533221 44555555444322 245556777777743
Q ss_pred CCHHHH
Q psy7809 248 YSGSDI 253 (343)
Q Consensus 248 ~s~~di 253 (343)
+.+.+
T Consensus 219 -dlr~l 223 (337)
T PRK12402 219 -DLRKA 223 (337)
T ss_pred -CHHHH
Confidence 33333
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.59 E-value=2.8e-14 Score=147.72 Aligned_cols=206 Identities=19% Similarity=0.230 Sum_probs=144.4
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---- 113 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---- 113 (343)
..+.....+.....+-.++.++|+++..+++.+.+.. ....+++|+||||||||++|+.+|..+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 4555555666667778899999999988888887754 234678999999999999999999886
Q ss_pred ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
+.+++.++...+. ..+.|..+..+..+|..+... .+.||||||+|.|++.+.... .....+.|...+.
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~d~~~~Lk~~l~-- 299 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AMDAGNMLKPALA-- 299 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hhHHHHHhchhhh--
Confidence 5678888877765 457788888899999988653 588999999999986332211 1123333333332
Q ss_pred CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcCCCC-----CCcccHHHHHHHccC
Q psy7809 185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-----DPNVDVATLSKQLIG 247 (343)
Q Consensus 185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-----~~~~~~~~la~~t~g 247 (343)
...+.+|++|+..+ .+|+++.|||..... +..|++.+...+.. ..+..+...+..+.+
T Consensus 300 -----~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~ 374 (852)
T TIGR03346 300 -----RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred -----cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc
Confidence 33688999998763 579999999975433 66777766555422 244556777888887
Q ss_pred CCH-----HHHHHHHHHHHHH
Q psy7809 248 YSG-----SDIRDLCQEIILI 263 (343)
Q Consensus 248 ~s~-----~di~~l~~~A~~~ 263 (343)
|-. .---+|+++|+..
T Consensus 375 yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 375 YITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred cccccCCchHHHHHHHHHHHH
Confidence 742 2233556666553
No 106
>KOG2028|consensus
Probab=99.59 E-value=1.7e-14 Score=129.88 Aligned_cols=174 Identities=22% Similarity=0.371 Sum_probs=110.7
Q ss_pred cccccCCCCCCCcccccHHHHHH---HHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---eE
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQI---FKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---FF 118 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~ 118 (343)
++.++-.+.+++|++||+.+..+ |+.++.. ..-.+++||||||||||+||+.|+.-...+ |+
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfv 194 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFV 194 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHc------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEE
Confidence 45667778899999999887654 2222221 234589999999999999999999887655 66
Q ss_pred EEcCCccccccccchHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809 119 NVLPSSLTSKHYGESEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV 193 (343)
Q Consensus 119 ~v~~~~l~~~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 193 (343)
+++...- ....++.+|+.++.. ...|||||||+.+-. .-+..|+-.++ .+.|
T Consensus 195 elSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk---------sQQD~fLP~VE-------~G~I 251 (554)
T KOG2028|consen 195 ELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK---------SQQDTFLPHVE-------NGDI 251 (554)
T ss_pred EEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh---------hhhhcccceec-------cCce
Confidence 6654332 223467777777542 357999999988833 22335555553 3367
Q ss_pred EEEEec-CCC-CCCCHHHhccccCcch-------HHHHHhhhhc---CC-----CC------CCcccHHHHHHHccCCCH
Q psy7809 194 LVLAAT-NHP-WDLDEALKRRFEKRIS-------PIQIIGLCLG---EI-----RK------DPNVDVATLSKQLIGYSG 250 (343)
Q Consensus 194 ~vI~tt-n~~-~~l~~~l~~rf~~~i~-------r~~il~~~~~---~~-----~~------~~~~~~~~la~~t~g~s~ 250 (343)
++||+| .+| -.|+.++++|+...+. -..||...+. .- .+ .++--++.||..++|-..
T Consensus 252 ~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred EEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 777665 344 4689999998765543 2233333221 10 11 122336778888888655
Q ss_pred HHH
Q psy7809 251 SDI 253 (343)
Q Consensus 251 ~di 253 (343)
..|
T Consensus 332 ~aL 334 (554)
T KOG2028|consen 332 AAL 334 (554)
T ss_pred HHH
Confidence 555
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.1e-14 Score=134.81 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=118.9
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN------ 119 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~------ 119 (343)
+-+++.+.+|++|+|++.+++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.-..
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 346788999999999999999998877642 345679999999999999999999998763100
Q ss_pred ----EcCC--------------cccc--ccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHH
Q psy7809 120 ----VLPS--------------SLTS--KHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRC 175 (343)
Q Consensus 120 ----v~~~--------------~l~~--~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~ 175 (343)
-.|. ++.. .........++.+...+.. ....|+||||+|.+. ....+
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~---------~~~~~ 145 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS---------IAAFN 145 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC---------HHHHH
Confidence 0010 0000 0000112334444443321 123599999999883 23456
Q ss_pred HHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcc----hHHHHH---hhhhcCCC-CCCcccHHHHHHHccC
Q psy7809 176 ELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI----SPIQII---GLCLGEIR-KDPNVDVATLSKQLIG 247 (343)
Q Consensus 176 ~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i----~r~~il---~~~~~~~~-~~~~~~~~~la~~t~g 247 (343)
.|++.++.. +...++|++++.+..+.+.+.+|+...- ...++. ...+.... ..++..++.|+..+.|
T Consensus 146 ~LLk~LEep-----~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 146 AFLKTLEEP-----PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG 220 (397)
T ss_pred HHHHHHhcC-----CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778887643 2356666677777888888888653211 133332 22222222 2345557788888876
Q ss_pred CCHHHHHHHHHHHHHH
Q psy7809 248 YSGSDIRDLCQEIILI 263 (343)
Q Consensus 248 ~s~~di~~l~~~A~~~ 263 (343)
+.+.+.+.++.+..+
T Consensus 221 -~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 221 -SMRDAQSILDQVIAF 235 (397)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 567776766655444
No 108
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=6e-14 Score=135.20 Aligned_cols=184 Identities=21% Similarity=0.234 Sum_probs=119.8
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+.+|+||+|++.+++.|...+... ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 346778899999999999999999888642 345679999999999999999999987542
Q ss_pred ----------------eEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809 117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176 (343)
Q Consensus 117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 176 (343)
++.++.... .....++.+.... ......|++|||+|.+. ....+.
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt---------~~~~n~ 140 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT---------KEAFNS 140 (451)
T ss_pred cccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC---------HHHHHH
Confidence 222211110 0112233222222 22345799999999883 235678
Q ss_pred HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHH---hhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809 177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQII---GLCLGEIRK-DPNVDVATLSKQLIGY 248 (343)
Q Consensus 177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il---~~~~~~~~~-~~~~~~~~la~~t~g~ 248 (343)
|++.++.. +..+++|++|+.+..+.+.+++|+...-. ..++. ...+..... .++..+..|+..+.|
T Consensus 141 LLk~lEep-----~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEP-----PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcC-----CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888764 33677778888888899999997653322 33333 333322222 344557788888866
Q ss_pred CHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEII 261 (343)
Q Consensus 249 s~~di~~l~~~A~ 261 (343)
+.+++.++++...
T Consensus 215 dlr~a~~~Lekl~ 227 (451)
T PRK06305 215 SLRDAESLYDYVV 227 (451)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666665543
No 109
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=5.5e-14 Score=135.27 Aligned_cols=193 Identities=14% Similarity=0.232 Sum_probs=116.8
Q ss_pred cCCCCCCCccc-ccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEE
Q psy7809 49 TDTGVGWDDIA-GLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNV 120 (343)
Q Consensus 49 ~~~~~~~~~l~-G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v 120 (343)
-.+..+|++++ |... +...+.++...+ ...++++||||+|+|||+|++++++++ +..++++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~-----------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP-----------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCc-----------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35667899876 5432 233333333221 124579999999999999999999886 4567888
Q ss_pred cCCccccccccchHH-HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 121 LPSSLTSKHYGESEK-LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 121 ~~~~l~~~~~~~~~~-~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
++.++.......... .+. -|.......+.+|+|||++.+.+... ....|+..++.+... ...+||++.
T Consensus 167 ~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~~-------~q~elf~~~n~l~~~---~k~iIitsd 235 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKTG-------VQTELFHTFNELHDS---GKQIVICSD 235 (440)
T ss_pred EHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcHH-------HHHHHHHHHHHHHHc---CCeEEEECC
Confidence 887765443222111 112 23323333578999999998864211 112233333322221 134555555
Q ss_pred CCCCC---CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809 200 NHPWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 200 n~~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a 264 (343)
..|.. +.+.+.+||...+. |..|++..+..... .++..++.||+...| +.++|..++.+....+
T Consensus 236 ~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred CCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 66665 45678888864432 88888888765322 244558889998877 6788887777655444
No 110
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=8.6e-14 Score=136.12 Aligned_cols=192 Identities=16% Similarity=0.277 Sum_probs=117.7
Q ss_pred CCCCCCccc-ccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcC
Q psy7809 51 TGVGWDDIA-GLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLP 122 (343)
Q Consensus 51 ~~~~~~~l~-G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~ 122 (343)
+..+|++++ |..+ +...+..++..+ ....+.++|||++|+|||+|++++|+++ +..++++++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~----------~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAP----------AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCc----------cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 456788875 4322 233344433321 0223459999999999999999999876 467889988
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC-
Q psy7809 123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH- 201 (343)
Q Consensus 123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~- 201 (343)
.++...+...........|... ...+++|+||||+.+........ .|+..++.+... ...+|| |++.
T Consensus 353 eef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke~tqe-------eLF~l~N~l~e~---gk~III-TSd~~ 420 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKESTQE-------EFFHTFNTLHNA---NKQIVL-SSDRP 420 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCHHHHH-------HHHHHHHHHHhc---CCCEEE-ecCCC
Confidence 8777554433222212223322 23468999999999865322222 222222222221 123444 5554
Q ss_pred CC---CCCHHHhccccCcch----------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 202 PW---DLDEALKRRFEKRIS----------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 202 ~~---~l~~~l~~rf~~~i~----------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
|. .+++.|.+||..-+. |..||+..+....+. ++.-++.|+....+ +.++|..++.+....+.
T Consensus 421 P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 421 PKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred hHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 43 467899999977664 999999888765333 44557789888876 67888877776554443
No 111
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.2e-13 Score=135.04 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=121.2
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN------ 119 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~------ 119 (343)
+.+++++.+|++|+|++.+++.|...+... .-+.++||+||+|+|||++|+.+|+.+.+.--.
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 346788999999999999999999877542 345679999999999999999999998763100
Q ss_pred ----EcCC--------------cccccccc---chHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHH
Q psy7809 120 ----VLPS--------------SLTSKHYG---ESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVR 174 (343)
Q Consensus 120 ----v~~~--------------~l~~~~~~---~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~ 174 (343)
-.|. ++.. ..+ .....++.+...+. .....|+||||+|.+. ....
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~-~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt---------~~a~ 144 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISE-FDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS---------TAAF 144 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEE-ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC---------HHHH
Confidence 0010 0000 001 11233444444332 1234699999999883 2346
Q ss_pred HHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHH---hhhhcCCC-CCCcccHHHHHHHcc
Q psy7809 175 CELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQII---GLCLGEIR-KDPNVDVATLSKQLI 246 (343)
Q Consensus 175 ~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il---~~~~~~~~-~~~~~~~~~la~~t~ 246 (343)
+.|++.|+.. +..+++|++|+.+..+.+.+.+|....-. ..++. ...+.... ..++..++.|+..+.
T Consensus 145 naLLK~LEeP-----p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEP-----PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 7888888754 33567777777788888898886432221 33332 22222222 234556788888887
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy7809 247 GYSGSDIRDLCQEIILI 263 (343)
Q Consensus 247 g~s~~di~~l~~~A~~~ 263 (343)
| +.+++.+.++....+
T Consensus 220 G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 220 G-SMRDAQSILDQVIAF 235 (620)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 566666666654444
No 112
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=5.6e-14 Score=141.63 Aligned_cols=181 Identities=20% Similarity=0.299 Sum_probs=114.6
Q ss_pred cccccCCCCCCCcccccHHHHH---HHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQ---IFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~---~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
++..+.++.+|++++|++.+.. .+...+.. ....+++||||||||||++|+++++.++.+++.++
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 4455677899999999999885 45555532 23358999999999999999999999999988887
Q ss_pred CCccccccccchHHHHHHHHHHHH-----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809 122 PSSLTSKHYGESEKLVRALFETAR-----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVL 196 (343)
Q Consensus 122 ~~~l~~~~~~~~~~~i~~~~~~a~-----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI 196 (343)
+.... . +.++..+..+. .....+|||||+|.+.. .....|+..++. ..+++|
T Consensus 85 a~~~~---i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------~qQdaLL~~lE~-------g~IiLI 141 (725)
T PRK13341 85 AVLAG---V----KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------AQQDALLPWVEN-------GTITLI 141 (725)
T ss_pred hhhhh---h----HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH---------HHHHHHHHHhcC-------ceEEEE
Confidence 64311 1 11223333221 12356999999998832 234456665542 256677
Q ss_pred EecC-CC-CCCCHHHhccccCcch-------HHHHHhhhhcC-------C-CCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809 197 AATN-HP-WDLDEALKRRFEKRIS-------PIQIIGLCLGE-------I-RKDPNVDVATLSKQLIGYSGSDIRDLCQE 259 (343)
Q Consensus 197 ~ttn-~~-~~l~~~l~~rf~~~i~-------r~~il~~~~~~-------~-~~~~~~~~~~la~~t~g~s~~di~~l~~~ 259 (343)
++|+ .+ ..+++++++|+..... ...+++..+.. . ...++..++.|+..+.| ..+.+.++++.
T Consensus 142 ~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 142 GATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred EecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 6553 33 4688999987532211 55666666542 1 11234446777777755 45666666655
Q ss_pred HH
Q psy7809 260 II 261 (343)
Q Consensus 260 A~ 261 (343)
|.
T Consensus 221 a~ 222 (725)
T PRK13341 221 AV 222 (725)
T ss_pred HH
Confidence 44
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.5e-14 Score=132.92 Aligned_cols=189 Identities=15% Similarity=0.161 Sum_probs=120.4
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC--
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS-- 123 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~-- 123 (343)
+.+++++.+|++++|++.+++.+...+... ..+.++|||||||+|||++|+++++.+........+.
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 346788999999999999999999888642 3456899999999999999999999886522111100
Q ss_pred -----ccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809 124 -----SLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL 194 (343)
Q Consensus 124 -----~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 194 (343)
++.. ........+..++..+.. ..+.||+|||+|.+.. ...+.|+..++.. +...+
T Consensus 76 ~~~~~~l~~-~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------~~~~~ll~~le~~-----~~~~~ 140 (367)
T PRK14970 76 SFNIFELDA-ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------AAFNAFLKTLEEP-----PAHAI 140 (367)
T ss_pred CcceEEecc-ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------HHHHHHHHHHhCC-----CCceE
Confidence 0100 011112445566655432 2346999999998732 3456777777643 23456
Q ss_pred EEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 195 VLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
+|++++.+..+.+++.+|+...-. ..+ ++...+..... .++..++.|+..+.| +.+.+.+.++...
T Consensus 141 ~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 141 FILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 777777788888999886543211 233 33333333322 345567788888765 5666666666544
No 114
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.57 E-value=1.9e-13 Score=130.45 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=120.9
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCccccc
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSK 128 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~ 128 (343)
..+.++|.++..+.|...+..... ...+.+++|+||||+|||++++.+++++ +..+++++|....+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 346789999999998887743211 1345679999999999999999999877 467888988654321
Q ss_pred c-----------------cc-chHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809 129 H-----------------YG-ESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG 189 (343)
Q Consensus 129 ~-----------------~~-~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 189 (343)
+ .+ .....+..++..... ..+.||+|||+|.+.... ....+..|+..++...
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-----~~~~l~~l~~~~~~~~---- 170 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-----GNDVLYSLLRAHEEYP---- 170 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-----CchHHHHHHHhhhccC----
Confidence 0 01 112333444443333 345799999999996211 1234556665554432
Q ss_pred CCCEEEEEecCCCC---CCCHHHhccccC-cch--------HHHHHhhhhcCC---CCCCcccHHHHHHHccCCC--HHH
Q psy7809 190 DKGVLVLAATNHPW---DLDEALKRRFEK-RIS--------PIQIIGLCLGEI---RKDPNVDVATLSKQLIGYS--GSD 252 (343)
Q Consensus 190 ~~~v~vI~ttn~~~---~l~~~l~~rf~~-~i~--------r~~il~~~~~~~---~~~~~~~~~~la~~t~g~s--~~d 252 (343)
..++.+|+++|..+ .+++.+.+||.. .+. ..+|++..+... ....+..++.+++.+.+.+ .+.
T Consensus 171 ~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 171 GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 22678888888764 467788777643 222 555666555321 1223444677888775432 333
Q ss_pred HHHHHHHHHHHHHHH
Q psy7809 253 IRDLCQEIILIAARE 267 (343)
Q Consensus 253 i~~l~~~A~~~a~~r 267 (343)
+.++|..|+..|..+
T Consensus 251 a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 251 AIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHc
Confidence 446777777666543
No 115
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.56 E-value=1.6e-13 Score=127.24 Aligned_cols=184 Identities=19% Similarity=0.176 Sum_probs=114.9
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~ 119 (343)
.+.+++.+.+|++++|++++++.+...+... ...+++|+||||+|||++++++++++.. .++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 4668899999999999999999999887532 2236899999999999999999998742 3444
Q ss_pred EcCCccccccccchHHHHHHHH-HHHHH-----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809 120 VLPSSLTSKHYGESEKLVRALF-ETARA-----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV 193 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~~i~~~~-~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 193 (343)
+++.+... ...+...+ ..+.. ..+.+|+|||+|.+.. .....|...++.... ..
T Consensus 74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------~~~~~L~~~le~~~~-----~~ 133 (319)
T PRK00440 74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------DAQQALRRTMEMYSQ-----NT 133 (319)
T ss_pred eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------HHHHHHHHHHhcCCC-----CC
Confidence 44332211 11122222 11211 2245999999998832 223456666654322 34
Q ss_pred EEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 194 LVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 194 ~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
.+|.++|.+..+.+.+.+|+...-. ...+++..+..... .++..+..++..+.| +.+.+.+.++.+.
T Consensus 134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 5666778777787888886553221 33445555544322 345567888888766 4555545554433
No 116
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=2e-13 Score=129.62 Aligned_cols=127 Identities=25% Similarity=0.364 Sum_probs=85.8
Q ss_pred cccccHHHHHHHHHHHhccccChHHHh----ccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cccc
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFK----GILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYG 131 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~ 131 (343)
.|+|++.+++.+...+..+...-.... ....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 389999999999776643211110000 11124578999999999999999999999999999999988753 4566
Q ss_pred ch-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhccc
Q psy7809 132 ES-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDG 183 (343)
Q Consensus 132 ~~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~ 183 (343)
.. ...+..++..+ ....++||||||||.+...... ......++..|++.|++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 53 33344444321 2346789999999999764111 11123577888888875
No 117
>PRK06893 DNA replication initiation factor; Validated
Probab=99.54 E-value=2.7e-13 Score=119.70 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=104.3
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL 125 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l 125 (343)
..+..+|++++|.++.. .+...... ... .....++||||||||||+|++++|+++ +....++.....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKN-------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHH-------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 35667899998765432 11111111 111 122458999999999999999999886 334455544321
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l 205 (343)
. .....++... ....+|+|||++.+.+... ....|...++..... ...++|++++..|..+
T Consensus 79 ~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~-------~~~~l~~l~n~~~~~--~~~illits~~~p~~l 139 (229)
T PRK06893 79 Q--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE-------WELAIFDLFNRIKEQ--GKTLLLISADCSPHAL 139 (229)
T ss_pred h--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-------HHHHHHHHHHHHHHc--CCcEEEEeCCCChHHc
Confidence 1 0111222222 2347999999998854211 111233333322221 1134455566667665
Q ss_pred C---HHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 206 D---EALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 206 ~---~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
+ +.+.+|+..-.. |..|++..+....+ .++..++.|+++..| +.+.+..++++.
T Consensus 140 ~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 140 SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 4 889987752221 88888876654432 355557889999977 677777777654
No 118
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.54 E-value=1.5e-13 Score=136.80 Aligned_cols=183 Identities=18% Similarity=0.190 Sum_probs=115.6
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcCCcc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLPSSL 125 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~~~l 125 (343)
+.|+|.++.++.|..++...+.. ..+...++|+|+||||||++++.+..++ ...+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 57899999999999888643321 1222345799999999999999998776 255789998654
Q ss_pred ccccc----------------c-chHHHHHHHHHHHHH--cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809 126 TSKHY----------------G-ESEKLVRALFETARA--RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 126 ~~~~~----------------~-~~~~~i~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
...+. + .....+..+|..... ....||+|||||.|... ...++..|+.+...
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------~QDVLYnLFR~~~~--- 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------TQKVLFTLFDWPTK--- 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------HHHHHHHHHHHhhc---
Confidence 32210 1 123445566655422 23469999999999652 12344455554321
Q ss_pred CCCCCCEEEEEecCC---CCCCCHHHhccccCc-ch--------HHHHHhhhhcCC-CCCCcccHHHHHHHccCCCHHHH
Q psy7809 187 GSGDKGVLVLAATNH---PWDLDEALKRRFEKR-IS--------PIQIIGLCLGEI-RKDPNVDVATLSKQLIGYSGSDI 253 (343)
Q Consensus 187 ~~~~~~v~vI~ttn~---~~~l~~~l~~rf~~~-i~--------r~~il~~~~~~~-~~~~~~~~~~la~~t~g~s~~di 253 (343)
...+++|||++|. +..|++.+.+||... +. ..+||+..+... ....+..+..+|+.++. ..+|+
T Consensus 899 --s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq-~SGDA 975 (1164)
T PTZ00112 899 --INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN-VSGDI 975 (1164)
T ss_pred --cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-cCCHH
Confidence 1347899999986 445678888877643 22 667777666543 22344456777776653 34676
Q ss_pred HHHH
Q psy7809 254 RDLC 257 (343)
Q Consensus 254 ~~l~ 257 (343)
+.++
T Consensus 976 RKAL 979 (1164)
T PTZ00112 976 RKAL 979 (1164)
T ss_pred HHHH
Confidence 6543
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=137.04 Aligned_cols=188 Identities=17% Similarity=0.157 Sum_probs=119.3
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE---cC
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV---LP 122 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v---~~ 122 (343)
+.+++.+.+|++|+|++.+++.|...+... ..+..+||+||+|+|||++|+.+|+.+.+....- .|
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 457889999999999999999998877642 3345689999999999999999999886432100 00
Q ss_pred --------------Ccccc--ccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 123 --------------SSLTS--KHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 123 --------------~~l~~--~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
.++.. .........++.+...+.. ....|+||||+|.|. ....+.|++.++
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~---------~~a~naLLk~LE 145 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS---------TAAFNALLKTLE 145 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC---------HHHHHHHHHHHh
Confidence 00000 0001112334444443322 224599999999883 245677888887
Q ss_pred cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809 183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR 254 (343)
Q Consensus 183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~ 254 (343)
.. ...++||++++..+.+.+.+++|+...-. ...++...+..... .++..+..|+..+.| +.+++.
T Consensus 146 ep-----p~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al 219 (585)
T PRK14950 146 EP-----PPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAE 219 (585)
T ss_pred cC-----CCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 54 23567777778888888888886543322 22233333333222 234457788888876 677776
Q ss_pred HHHHH
Q psy7809 255 DLCQE 259 (343)
Q Consensus 255 ~l~~~ 259 (343)
+.++.
T Consensus 220 ~~Lek 224 (585)
T PRK14950 220 NLLQQ 224 (585)
T ss_pred HHHHH
Confidence 66664
No 120
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=4.4e-13 Score=128.79 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=111.5
Q ss_pred CCCCCCCccc-ccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 50 DTGVGWDDIA-GLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 50 ~~~~~~~~l~-G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
.+..+|++++ |... +...+.++...+...+ ....++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGK------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccccc------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 5667899876 5332 2344444432221000 0234679999999999999999999876 5778888876
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
++...........-...|.... ..+++|+|||++.+.+.....+....+++.+.. ....+|++++..|.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~----------~~k~IIlts~~~p~ 247 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT----------EGKLIVISSTCAPQ 247 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH----------CCCcEEEecCCCHH
Confidence 6544322111111111233222 346799999999886432222222223332221 11344555544454
Q ss_pred ---CCCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 204 ---DLDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 204 ---~l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
.+++.+.+||...+. |..|++..+..... .++..++.||....+ +.++|..++...+
T Consensus 248 ~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 248 DLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred HHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 467899999864332 77888877766532 244446678887765 5666666555543
No 121
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=7.6e-13 Score=117.23 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=105.0
Q ss_pred CCCCCCCccc-c-cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCc
Q psy7809 50 DTGVGWDDIA-G-LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSS 124 (343)
Q Consensus 50 ~~~~~~~~l~-G-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~ 124 (343)
.+..+|++++ | ...+...+...... ....+++||||+|||||+|++++++++. ..+.++....
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4456788876 4 55666666665432 2335899999999999999999998764 3455554433
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC-EEEEEecCCCC
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG-VLVLAATNHPW 203 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~-v~vI~ttn~~~ 203 (343)
... ....+.+.... ..+|+|||++.+.+..........+++.+ ++ .++ .+++++++.|.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf~l~n~~---~e-------~g~~~li~ts~~~p~ 143 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMAIFDLYNRI---LE-------SGRTRLLITGDRPPR 143 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHHHHHHHHHH---HH-------cCCCeEEEeCCCChH
Confidence 211 11122222211 26899999998854221111112222222 21 112 34555555555
Q ss_pred C---CCHHHhccccCcch----------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 204 D---LDEALKRRFEKRIS----------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 204 ~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
. +.+.++||+..-.. +..+++....... ..++.-++.|+++..| +.+.+..++++.
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 5 57999999853322 6677766444332 2345558899999987 688888877764
No 122
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.8e-13 Score=133.92 Aligned_cols=185 Identities=15% Similarity=0.190 Sum_probs=123.8
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------- 116 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------- 116 (343)
.+++.+.+|++|+|++.+++.|...+... ..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 46788899999999999999999888642 345678999999999999999999987632
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
++.+++.+ ......++.+...+... ...|++|||+|.|. ....+.|
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls---------~~a~naL 141 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS---------QAAFNAF 141 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC---------HHHHHHH
Confidence 22222211 11133455555444322 23599999999882 3457788
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCCC-CcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRKD-PNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~~-~~~~~~~la~~t~g~s 249 (343)
++.|+.. +...++|++|+.+..+-+.+++|+...-. ..+ .++..+....+. +...+..|+..+.| +
T Consensus 142 LK~LEep-----p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 142 LKTLEEP-----PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred HHHHhCC-----CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8988864 34567788887888899999997544322 222 233333333322 33457888888866 6
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIILI 263 (343)
Q Consensus 250 ~~di~~l~~~A~~~ 263 (343)
.+++.++++....+
T Consensus 216 lr~al~~Lekl~~y 229 (614)
T PRK14971 216 MRDALSIFDQVVSF 229 (614)
T ss_pred HHHHHHHHHHHHHh
Confidence 77776666665433
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=7.2e-13 Score=127.70 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=104.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCccccccccchHH---HHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSKHYGESEK---LVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~~~~~~~~---~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
.++++|||++|+|||+|++++++++ +..++++++.++.......... .+..+... ...+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 4579999999999999999999865 4678888887776554433221 12222111 234579999999988
Q ss_pred cCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC---CCHHHhccccCcch----------HHHHHhhhh
Q psy7809 161 CSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD---LDEALKRRFEKRIS----------PIQIIGLCL 227 (343)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~~~i~----------r~~il~~~~ 227 (343)
..... ....|...++...... ..+||++...|.. +++.+.+||..-+. |..|++..+
T Consensus 219 ~~k~~-------~~e~lf~l~N~~~~~~---k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 219 SYKEK-------TNEIFFTIFNNFIEND---KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred cCCHH-------HHHHHHHHHHHHHHcC---CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 54221 1222333332222211 2334443344433 57899999975543 888888888
Q ss_pred cCCC---CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809 228 GEIR---KDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 228 ~~~~---~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~ 266 (343)
.... ..++..++.||..+.| +.+.+..++.++...+..
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 7643 2345567889999987 788888888877655543
No 124
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.51 E-value=8.6e-13 Score=114.66 Aligned_cols=140 Identities=24% Similarity=0.328 Sum_probs=99.7
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS 124 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~ 124 (343)
....++.+++|+|.+.+++.|.+...... .+ .+.+++||+|++|||||++++++..++ |..++++...+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl-------~G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFL-------QG-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHH-------cC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 44557889999999999999987664332 22 578899999999999999999999876 56778887655
Q ss_pred cccccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 125 LTSKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
+.. +..++..... ..+-|||+||+- + +....-...|...|++--... +.+|+|.+|+|+.+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F-------e~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRH 152 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS-F-------EEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRH 152 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC-C-------CCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhh
Confidence 543 4455555443 234699999973 1 112223345666666654433 77999999999998
Q ss_pred CCCHHHhccc
Q psy7809 204 DLDEALKRRF 213 (343)
Q Consensus 204 ~l~~~l~~rf 213 (343)
.+++.+..|-
T Consensus 153 Lv~E~~~d~~ 162 (249)
T PF05673_consen 153 LVPESFSDRE 162 (249)
T ss_pred ccchhhhhcc
Confidence 8877666653
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.50 E-value=7.5e-13 Score=116.81 Aligned_cols=177 Identities=15% Similarity=0.118 Sum_probs=105.0
Q ss_pred ccCCCCCCCccc--ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 48 QTDTGVGWDDIA--GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 48 ~~~~~~~~~~l~--G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
...++.+|++++ +.+.+...+..+... .....+++|+||+|||||+||+++++++ +.+++++++
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 345567899977 345666666665531 1345689999999999999999999875 567788877
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC-
Q psy7809 123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH- 201 (343)
Q Consensus 123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~- 201 (343)
.++... + .......+|+|||+|.+.. .....|...++..... ...++|.+++.
T Consensus 79 ~~~~~~------------~--~~~~~~~~liiDdi~~l~~---------~~~~~L~~~~~~~~~~---~~~~vl~~~~~~ 132 (227)
T PRK08903 79 ASPLLA------------F--DFDPEAELYAVDDVERLDD---------AQQIALFNLFNRVRAH---GQGALLVAGPAA 132 (227)
T ss_pred HHhHHH------------H--hhcccCCEEEEeChhhcCc---------hHHHHHHHHHHHHHHc---CCcEEEEeCCCC
Confidence 654311 1 1122357999999998732 1122333333322211 13334444443
Q ss_pred C--CCCCHHHhccccC--cch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809 202 P--WDLDEALKRRFEK--RIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIIL 262 (343)
Q Consensus 202 ~--~~l~~~l~~rf~~--~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~ 262 (343)
+ ..+.+.+.+||.. .+. +..+++........ .++.-++.|+....| +.+++..+++....
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~ 205 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDR 205 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 3 2356778888743 332 33445444433322 244457778887766 78888888776433
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=7.3e-13 Score=125.15 Aligned_cols=145 Identities=24% Similarity=0.354 Sum_probs=93.3
Q ss_pred cccccHHHHHHHHHHHhccccChHH----H--hccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cc
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQL----F--KGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KH 129 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~----~--~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~ 129 (343)
.++|++++++.+...+......-.. . ........++||+||||||||++|+++|..++.+|..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3699999999998766321111000 0 000112468999999999999999999999999999999887653 45
Q ss_pred ccch-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCC--------CCCC
Q psy7809 130 YGES-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTG--------SGDK 191 (343)
Q Consensus 130 ~~~~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~--------~~~~ 191 (343)
+|.. ...+..++..+ ....++||||||+|.+...... ......+++.|++.|++.... ....
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 5653 34444444432 2345789999999999763111 111125778888888754311 1123
Q ss_pred CEEEEEecCC
Q psy7809 192 GVLVLAATNH 201 (343)
Q Consensus 192 ~v~vI~ttn~ 201 (343)
+.++|.|+|-
T Consensus 238 ~~i~i~TsNi 247 (413)
T TIGR00382 238 EFIQIDTSNI 247 (413)
T ss_pred CeEEEEcCCc
Confidence 5677777775
No 127
>PRK08727 hypothetical protein; Validated
Probab=99.49 E-value=2.7e-12 Score=113.62 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=101.4
Q ss_pred CCCCCCCccccc-HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809 50 DTGVGWDDIAGL-DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL 125 (343)
Q Consensus 50 ~~~~~~~~l~G~-~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l 125 (343)
.+..+|+++++. .+....+...... .....++|+||+|||||+|+++++.++ +..+.+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~~------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAAG------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHhc------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 445678887654 4444433332211 223469999999999999999998765 455566654432
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec-CCCCC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT-NHPWD 204 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt-n~~~~ 204 (343)
.. .+...+... ....+|+|||++.+....... ..+...++..... +..+|+|+ ..|..
T Consensus 81 ~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~~~-------~~lf~l~n~~~~~----~~~vI~ts~~~p~~ 139 (233)
T PRK08727 81 AG--------RLRDALEAL--EGRSLVALDGLESIAGQREDE-------VALFDFHNRARAA----GITLLYTARQMPDG 139 (233)
T ss_pred hh--------hHHHHHHHH--hcCCEEEEeCcccccCChHHH-------HHHHHHHHHHHHc----CCeEEEECCCChhh
Confidence 21 223333333 344799999999886432211 1222222222111 22344444 45655
Q ss_pred C---CHHHhccccCcch----------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 205 L---DEALKRRFEKRIS----------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 205 l---~~~l~~rf~~~i~----------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
+ ++.+.|||..... +..+++....... ..++..++.|++.+.| +.+.+.++++...
T Consensus 140 l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 140 LALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred hhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4 6899999754432 7778876554322 2345567888988875 4455555555443
No 128
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=1.2e-12 Score=130.63 Aligned_cols=227 Identities=16% Similarity=0.224 Sum_probs=132.6
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---------- 113 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------- 113 (343)
+.+.....+.+|++++|++...+.+...+.. ..+.+++|+||+|||||++|+.+....
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~ 209 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE 209 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence 4555566788999999999988887665532 234579999999999999999998655
Q ss_pred CCceEEEcCCccccc-------cccchHHH----HHHHHHH----------HHHcCCcEEEEcccccccCCCCchhhhHH
Q psy7809 114 GSTFFNVLPSSLTSK-------HYGESEKL----VRALFET----------ARARAPAVIFIDEVDAFCSGSREHEATRR 172 (343)
Q Consensus 114 ~~~~~~v~~~~l~~~-------~~~~~~~~----i~~~~~~----------a~~~~p~il~iDeid~l~~~~~~~~~~~~ 172 (343)
+.+|+.++|..+... ..+..... ....+.. ......++|||||++.|- ..
T Consensus 210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld---------~~ 280 (615)
T TIGR02903 210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD---------PL 280 (615)
T ss_pred CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC---------HH
Confidence 356888888765210 11110000 0000100 012234699999998883 23
Q ss_pred HHHHHhhhcccCC-----------------------CCCCCCCEEEEE-ecCCCCCCCHHHhccccCcch-------HHH
Q psy7809 173 VRCELLSHMDGVG-----------------------TGSGDKGVLVLA-ATNHPWDLDEALKRRFEKRIS-------PIQ 221 (343)
Q Consensus 173 ~~~~ll~~l~~~~-----------------------~~~~~~~v~vI~-ttn~~~~l~~~l~~rf~~~i~-------r~~ 221 (343)
....|+..++.-. .......+++|+ |++.++.+++++++||..... ...
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 3444444443210 000122355554 556788899999998764432 666
Q ss_pred HHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccC
Q psy7809 222 IIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVA 300 (343)
Q Consensus 222 il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (343)
|++..+..... .++.-++.|+..+. .++...+++..+...+..+.....
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~---------------------------- 410 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAG---------------------------- 410 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhc----------------------------
Confidence 77766665422 22334455666553 344444555566555444432100
Q ss_pred CCCCCcccccHHHHHHHHHhcC
Q psy7809 301 PLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 301 ~~~~~~~~lt~~df~~Al~~~~ 322 (343)
.....+.|+.+|+.+++..-+
T Consensus 411 -~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 411 -KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred -cCCCCeeECHHHHHHHhCCCc
Confidence 001123499999999998765
No 129
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.49 E-value=5.2e-13 Score=117.62 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=109.7
Q ss_pred CCCCCccc--ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809 52 GVGWDDIA--GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT 126 (343)
Q Consensus 52 ~~~~~~l~--G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~ 126 (343)
..+|++++ +...+.+.+..++.. ..+.+++|+||+|||||++|+++++++ +.+++++++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 45677776 466788888876531 345789999999999999999999876 4678888887765
Q ss_pred cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809 127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206 (343)
Q Consensus 127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~ 206 (343)
... ..++... ..+.+|+|||+|.+.... .....+...++..... ...+|++++..+..++
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~~---~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQP-------EWQEALFHLYNRVREA---GGRLLIAGRAAPAQLP 138 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHc---CCeEEEECCCChHHCC
Confidence 321 2223222 234699999999884311 0112233333222111 1234444443444332
Q ss_pred ---HHHhcccc--Ccch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809 207 ---EALKRRFE--KRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 207 ---~~l~~rf~--~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~ 266 (343)
+.+.+|+. ..+. +..+++.+...... .++..+..|+....| +.+++.++++.+...+..
T Consensus 139 ~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 139 LRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLA 211 (226)
T ss_pred cccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence 77887764 3332 55666655443322 244446778887655 889999988876654443
No 130
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.49 E-value=6.3e-13 Score=116.38 Aligned_cols=192 Identities=17% Similarity=0.266 Sum_probs=115.8
Q ss_pred CCCCCCCccc-c--cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809 50 DTGVGWDDIA-G--LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL 121 (343)
Q Consensus 50 ~~~~~~~~l~-G--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~ 121 (343)
.|..+|++++ | ...+...+..+...+. .....++||||+|+|||+|++++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3567899875 5 3455555555544321 233568999999999999999999875 56688888
Q ss_pred CCccccccccchHH-HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 122 PSSLTSKHYGESEK-LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 122 ~~~l~~~~~~~~~~-~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
+.++...+...... .+..+... .....+|+||+++.+.+. ......|...++.+... ++.+|+++..
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~--~~~~DlL~iDDi~~l~~~-------~~~q~~lf~l~n~~~~~---~k~li~ts~~ 139 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDR--LRSADLLIIDDIQFLAGK-------QRTQEELFHLFNRLIES---GKQLILTSDR 139 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHH--HCTSSEEEEETGGGGTTH-------HHHHHHHHHHHHHHHHT---TSEEEEEESS
T ss_pred HHHHHHHHHHHHHcccchhhhhh--hhcCCEEEEecchhhcCc-------hHHHHHHHHHHHHHHhh---CCeEEEEeCC
Confidence 77766543322211 12222221 124479999999998531 12333444444333221 2455666656
Q ss_pred CCCC---CCHHHhccccCcch----------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809 201 HPWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 201 ~~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a 264 (343)
.|.. +++.+.+||..-+. |..|++..+...... ++.-++.|++...+ +.++|..++++-...+
T Consensus 140 ~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 140 PPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp -TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred CCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 6654 56889999876554 888888877766433 34446788888866 7888888877655443
No 131
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=2e-12 Score=119.55 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------eEEEcCCcc
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------FFNVLPSSL 125 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------~~~v~~~~l 125 (343)
+|++++|++.+++.+...+... ..++.+||+||+|+|||++|+.+|+.+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 6899999999999999887532 455678999999999999999999987432 22332210
Q ss_pred ccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 126 TSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
+. ......++.+...+. .....|++||++|.+ .....+.|++.++.. +.++++|.+|+.
T Consensus 70 -~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m---------~~~a~naLLK~LEep-----p~~t~~il~~~~ 132 (313)
T PRK05564 70 -KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM---------TEQAQNAFLKTIEEP-----PKGVFIILLCEN 132 (313)
T ss_pred -CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc---------CHHHHHHHHHHhcCC-----CCCeEEEEEeCC
Confidence 11 112233555444332 223469999999888 345677899999854 446777777788
Q ss_pred CCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCC
Q psy7809 202 PWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGY 248 (343)
Q Consensus 202 ~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~ 248 (343)
++.+.+.++||+...-. ..++..+.-......+...+..++..+.|-
T Consensus 133 ~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 133 LEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGI 183 (313)
T ss_pred hHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCC
Confidence 99999999997753332 344433333222222344466777777663
No 132
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=4.2e-12 Score=119.02 Aligned_cols=183 Identities=20% Similarity=0.144 Sum_probs=117.6
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE-E---------
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF-N--------- 119 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~-~--------- 119 (343)
-.+.++++|+|++.+++.|...+... +.+..+||+||+|+||+++|.++|+.+-+.-- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35678999999999999999888653 45667999999999999999999988743110 0
Q ss_pred -E----cC-----------Cccccc-----ccc------chHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchh
Q psy7809 120 -V----LP-----------SSLTSK-----HYG------ESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHE 168 (343)
Q Consensus 120 -v----~~-----------~~l~~~-----~~~------~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~ 168 (343)
+ .| +++..- ..+ -....++.+...+ ....|.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 0 00 111100 000 0122344444333 2345679999999988
Q ss_pred hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHH
Q psy7809 169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQ 244 (343)
Q Consensus 169 ~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~ 244 (343)
.....+.|++.++.. +.+.++|.+|+.++.+.+.+++|+...-. ..++............+..+..++..
T Consensus 154 -~~~aanaLLK~LEep-----p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~ 227 (365)
T PRK07471 154 -NANAANALLKVLEEP-----PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAAL 227 (365)
T ss_pred -CHHHHHHHHHHHhcC-----CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 346677888888754 33678888999999999999997654433 55555444433222222233567777
Q ss_pred ccCCCHHHHHHHHH
Q psy7809 245 LIGYSGSDIRDLCQ 258 (343)
Q Consensus 245 t~g~s~~di~~l~~ 258 (343)
+.| +++....+++
T Consensus 228 s~G-sp~~Al~ll~ 240 (365)
T PRK07471 228 AEG-SVGRALRLAG 240 (365)
T ss_pred cCC-CHHHHHHHhc
Confidence 877 5555545543
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.45 E-value=1.6e-12 Score=105.52 Aligned_cols=137 Identities=38% Similarity=0.571 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHH
Q psy7809 60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKL 136 (343)
Q Consensus 60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~ 136 (343)
|++.+.+.+...+.. ....+++|+||||+|||++++.++..+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 566777777766643 245689999999999999999999998 88899998877654332221111
Q ss_pred ---HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-CCCCCEEEEEecCCCC--CCCHHHh
Q psy7809 137 ---VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-SGDKGVLVLAATNHPW--DLDEALK 210 (343)
Q Consensus 137 ---i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~v~vI~ttn~~~--~l~~~l~ 210 (343)
....+.......+.+|+|||++.+.. .....++..+...... ....++.+|++++... .+++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 140 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSR---------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALY 140 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhH---------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHH
Confidence 11222333445678999999987721 1222333333332211 0123678888888876 6778888
Q ss_pred ccccCcc
Q psy7809 211 RRFEKRI 217 (343)
Q Consensus 211 ~rf~~~i 217 (343)
+||..++
T Consensus 141 ~r~~~~i 147 (151)
T cd00009 141 DRLDIRI 147 (151)
T ss_pred hhhccEe
Confidence 8886543
No 134
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=5.7e-12 Score=111.56 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=95.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR 165 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~ 165 (343)
..+++|+||+|+|||+|++++++++ +..+++++..++... ...+.+.... ..+|+|||++.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCChH
Confidence 3678999999999999999999765 567778877665532 1222222222 26999999998854221
Q ss_pred chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC---CHHHhccccCcch----------HHHHHhhhhcCCCC
Q psy7809 166 EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL---DEALKRRFEKRIS----------PIQIIGLCLGEIRK 232 (343)
Q Consensus 166 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l---~~~l~~rf~~~i~----------r~~il~~~~~~~~~ 232 (343)
. ...|...++.+.. .++.+|++++..|..+ .+.+++||..-+. |..+++.......+
T Consensus 115 ~-------~~~Lf~l~n~~~~---~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 115 W-------EEALFHLFNRLRD---SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred H-------HHHHHHHHHHHHh---cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 1233333333222 2255666666666443 5889999843332 77777744433322
Q ss_pred -CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 233 -DPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 233 -~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
.++.-++.|++...+ +.+.+..+++.-.
T Consensus 185 ~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 213 (234)
T PRK05642 185 HLTDEVGHFILTRGTR-SMSALFDLLERLD 213 (234)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 345557888888877 6788877776544
No 135
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.5e-12 Score=120.36 Aligned_cols=193 Identities=19% Similarity=0.197 Sum_probs=120.9
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----eEEEcCCccccccc-
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----FFNVLPSSLTSKHY- 130 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----~~~v~~~~l~~~~~- 130 (343)
.+.+.++.++++..++...... ..|.++++||+||||||.+++.++.++... +++++|....+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 3889999999999887543321 345579999999999999999999988544 89999977654321
Q ss_pred --------------cc-hHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809 131 --------------GE-SEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL 194 (343)
Q Consensus 131 --------------~~-~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 194 (343)
|. ....+..+++.... ...-||+|||+|.|....+ .++..|+...... ..++.
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------~~LY~L~r~~~~~-----~~~v~ 158 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------EVLYSLLRAPGEN-----KVKVS 158 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------hHHHHHHhhcccc-----ceeEE
Confidence 11 12223333333333 2345999999999976433 4555666655443 33789
Q ss_pred EEEecCCCC---CCCHHHhccccCcc-h--------HHHHHhhhhcCC---CCCCcccHHHHHHHc---cCCCHHHHHHH
Q psy7809 195 VLAATNHPW---DLDEALKRRFEKRI-S--------PIQIIGLCLGEI---RKDPNVDVATLSKQL---IGYSGSDIRDL 256 (343)
Q Consensus 195 vI~ttn~~~---~l~~~l~~rf~~~i-~--------r~~il~~~~~~~---~~~~~~~~~~la~~t---~g~s~~di~~l 256 (343)
+|+.+|..+ .+++.+.++|...- . -.+|++...... ....+.-+..+|..+ .| ..+---++
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidi 237 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDI 237 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHH
Confidence 999999874 57888888554322 2 444444444322 111222233344333 33 22323368
Q ss_pred HHHHHHHHHHHHH
Q psy7809 257 CQEIILIAAREVI 269 (343)
Q Consensus 257 ~~~A~~~a~~r~~ 269 (343)
|+.|...|.++..
T Consensus 238 lr~A~eiAe~~~~ 250 (366)
T COG1474 238 LRRAGEIAEREGS 250 (366)
T ss_pred HHHHHHHHHhhCC
Confidence 8899988887654
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=2.7e-12 Score=130.16 Aligned_cols=201 Identities=17% Similarity=0.182 Sum_probs=126.5
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc-----ccc
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK-----HYG 131 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~-----~~~ 131 (343)
.|+||+++++.|...+...... +. .-.+|..++||+||||||||++|+++|..++.+++.++|+++... .+|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g--l~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG--LG-HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc--cc-CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 4799999999999988643110 00 001344579999999999999999999999999999998876432 111
Q ss_pred ch----H-HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-CC-----CCCCCEEEEEecC
Q psy7809 132 ES----E-KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-TG-----SGDKGVLVLAATN 200 (343)
Q Consensus 132 ~~----~-~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~-----~~~~~v~vI~ttn 200 (343)
.. . ..-..+.........+||||||||++ ...+.+.|++.|+.-. .. ..-.++++|+|||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka---------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA---------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhh---------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 10 0 00111223334455689999999988 3467788888886321 11 0124788999998
Q ss_pred CC-------------------------CCCCHHHhccccCcch--------HHHHHhhhhcC-------CCCC---Cccc
Q psy7809 201 HP-------------------------WDLDEALKRRFEKRIS--------PIQIIGLCLGE-------IRKD---PNVD 237 (343)
Q Consensus 201 ~~-------------------------~~l~~~l~~rf~~~i~--------r~~il~~~~~~-------~~~~---~~~~ 237 (343)
.- ..+.|.++.|++..+. ...|+...+.. .... ++.-
T Consensus 607 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~ 686 (758)
T PRK11034 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEA 686 (758)
T ss_pred cCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHH
Confidence 32 1245777788886654 33344333321 1111 2333
Q ss_pred HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 238 VATLSKQL--IGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 238 ~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
++.|+... ..|-.+.|+.++++-+...+.+..
T Consensus 687 ~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 687 RDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 55666543 234578899998888888877654
No 137
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.43 E-value=7.3e-12 Score=117.18 Aligned_cols=195 Identities=16% Similarity=0.196 Sum_probs=123.3
Q ss_pred ccCCCCCCCcccccH---HHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEE
Q psy7809 48 QTDTGVGWDDIAGLD---NVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFN 119 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~---~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~ 119 (343)
.-.+..+|++++.-. -+......+...+- ...+.++||||.|+|||+|+++++++.. ..+++
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g----------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y 148 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPG----------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY 148 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhccC----------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe
Confidence 446677888865422 22333333332221 2456799999999999999999998763 35777
Q ss_pred EcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 120 VLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
++...+...++......-..-|+.-. .-.+++|||++.+.++....+....+.+.+.. .++-+|+.+-
T Consensus 149 ~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~----------~~kqIvltsd 216 (408)
T COG0593 149 LTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE----------NGKQIVLTSD 216 (408)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh----------cCCEEEEEcC
Confidence 77766665544443333333444444 34799999999997654433444444444433 1245666666
Q ss_pred CCCCCC---CHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDL---DEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 200 n~~~~l---~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
..|..+ .+.++|||...+. |..||+.......+ .++.-+..+|..... +.++|..++.+....|.
T Consensus 217 r~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~ 295 (408)
T COG0593 217 RPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFAL 295 (408)
T ss_pred CCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 667665 4899999987765 88888886655533 345557788888755 67777776666555554
No 138
>PRK06620 hypothetical protein; Validated
Probab=99.43 E-value=9.8e-12 Score=108.36 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=100.3
Q ss_pred ccCCCCCCCccc-cc--HHHHHHHHHHHhccccChHHHhccCCC-CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 48 QTDTGVGWDDIA-GL--DNVKQIFKETLLLPKLMPQLFKGILRP-WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 48 ~~~~~~~~~~l~-G~--~~~k~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
...+..+|++++ |. +.+...+.+....+ ...+ ...++||||+|||||+|++++++..+..++. ..
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~ 76 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DI 76 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hh
Confidence 345667888865 33 34555555543211 0122 2679999999999999999999887643222 11
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
.. ....+ ....+|+|||+|.+ +... +. .+++.+. . .+..++|+++..|.
T Consensus 77 ~~-----------~~~~~-----~~~d~lliDdi~~~-----~~~~---lf-~l~N~~~---e---~g~~ilits~~~p~ 125 (214)
T PRK06620 77 FF-----------NEEIL-----EKYNAFIIEDIENW-----QEPA---LL-HIFNIIN---E---KQKYLLLTSSDKSR 125 (214)
T ss_pred hh-----------chhHH-----hcCCEEEEeccccc-----hHHH---HH-HHHHHHH---h---cCCEEEEEcCCCcc
Confidence 10 00111 12379999999855 1111 11 2222221 1 22466777776665
Q ss_pred C--CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 204 D--LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 204 ~--l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
. + +.+++|+...+. +..+++..+....+ .++.-++.|+....| +.+.+..+++..
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 4 5 789999874432 67777776664322 345557889999877 677777777763
No 139
>KOG0991|consensus
Probab=99.41 E-value=1.5e-12 Score=110.83 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=97.1
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceE
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFF 118 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~ 118 (343)
..+++++.+..+.||+|.++....|.-+... ....+++|.||||+||||-+.++|+++-. -+.
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 3488999999999999999999999866643 34468999999999999999999998732 356
Q ss_pred EEcCCccccccccchHHHHHHHHHHHHH-cCC---cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809 119 NVLPSSLTSKHYGESEKLVRALFETARA-RAP---AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL 194 (343)
Q Consensus 119 ~v~~~~l~~~~~~~~~~~i~~~~~~a~~-~~p---~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 194 (343)
+++.++-.+-. -....++. |..-+- ..| .|++|||+|++.. ..+.+|...|+-++. ...
T Consensus 83 ELNASdeRGID--vVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~---------gAQQAlRRtMEiyS~-----ttR 145 (333)
T KOG0991|consen 83 ELNASDERGID--VVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTA---------GAQQALRRTMEIYSN-----TTR 145 (333)
T ss_pred hccCccccccH--HHHHHHHH-HHHhhccCCCCceeEEEeeccchhhh---------HHHHHHHHHHHHHcc-----cch
Confidence 66666543321 11222222 222222 222 3999999999842 234455666655533 346
Q ss_pred EEEecCCCCCCCHHHhccc
Q psy7809 195 VLAATNHPWDLDEALKRRF 213 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~rf 213 (343)
+..++|....+-+.+.||+
T Consensus 146 FalaCN~s~KIiEPIQSRC 164 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRC 164 (333)
T ss_pred hhhhhcchhhhhhhHHhhh
Confidence 7888898888888888843
No 140
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=1.2e-11 Score=115.32 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=114.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-------eEEE-c
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------FFNV-L 121 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------~~~v-~ 121 (343)
-.+..+++|+|++++.+.|...+... ..+..+||+||+|+|||++|+.+|+.+.+. .... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 45788999999999999999888643 455679999999999999999999988551 1000 0
Q ss_pred ---C-----------Cccc---cc--c------ccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHH
Q psy7809 122 ---P-----------SSLT---SK--H------YGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRR 172 (343)
Q Consensus 122 ---~-----------~~l~---~~--~------~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~ 172 (343)
| +++. .. . ..-....++.+..... .....|++|||+|.| ...
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l---------~~~ 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM---------NRN 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc---------CHH
Confidence 1 0110 00 0 0001223333333222 234569999999988 335
Q ss_pred HHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-----HHHHHhhhhcCCCC---CCcccHHHHHHH
Q psy7809 173 VRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-----PIQIIGLCLGEIRK---DPNVDVATLSKQ 244 (343)
Q Consensus 173 ~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-----r~~il~~~~~~~~~---~~~~~~~~la~~ 244 (343)
..+.|++.++.. +.+.++|..|+.++.+.+.+++|+. .+. ..++....- .... .++..+..++..
T Consensus 157 aanaLLk~LEEp-----p~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~-~~~~~~~~~~~~~~~i~~~ 229 (351)
T PRK09112 157 AANAILKTLEEP-----PARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALS-HLGSSQGSDGEITEALLQR 229 (351)
T ss_pred HHHHHHHHHhcC-----CCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHH-HhhcccCCCHHHHHHHHHH
Confidence 567788888764 3356777777888989999999874 333 333332222 2111 123346678888
Q ss_pred ccCCCHHHHHHHHHHHH
Q psy7809 245 LIGYSGSDIRDLCQEII 261 (343)
Q Consensus 245 t~g~s~~di~~l~~~A~ 261 (343)
+.| +++...++++...
T Consensus 230 s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 230 SKG-SVRKALLLLNYGG 245 (351)
T ss_pred cCC-CHHHHHHHHhcCc
Confidence 877 5555555554443
No 141
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.40 E-value=6.1e-12 Score=107.71 Aligned_cols=140 Identities=28% Similarity=0.382 Sum_probs=99.7
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
+...+.+.+.+|+|.+.+++.|.+-... |..+ .+.++|||+|..|||||+|++++-+++ +..+++|+..
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQ-------FAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHH-------HHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 4455668899999999999998865543 2222 577899999999999999999998877 4678888876
Q ss_pred ccccccccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
++.. +-.++...+... +-|||+|++- .+........|-..|++--... +.+|+|.+|+|+.
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS--------Fe~gd~~yK~LKs~LeG~ve~r-P~NVl~YATSNRR 184 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLS--------FEEGDDAYKALKSALEGGVEGR-PANVLFYATSNRR 184 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCC--------CCCCchHHHHHHHHhcCCcccC-CCeEEEEEecCCc
Confidence 6653 444555554432 4599999982 1122233445555666544433 6799999999999
Q ss_pred CCCCHHHhcc
Q psy7809 203 WDLDEALKRR 212 (343)
Q Consensus 203 ~~l~~~l~~r 212 (343)
+.|++.+..+
T Consensus 185 HLl~e~~~dn 194 (287)
T COG2607 185 HLLPEDMKDN 194 (287)
T ss_pred ccccHhhhhC
Confidence 9988777763
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.39 E-value=8e-12 Score=127.79 Aligned_cols=200 Identities=20% Similarity=0.216 Sum_probs=129.0
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc-------
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK------- 128 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~------- 128 (343)
+.|+||+++++.+...+...... .....+|..++||+||+|||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 45789999999988877642110 00001233468999999999999999999999999999998876532
Q ss_pred -----cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC------CCCCCEEEEE
Q psy7809 129 -----HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG------SGDKGVLVLA 197 (343)
Q Consensus 129 -----~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~v~vI~ 197 (343)
|+|... ...+.........+||+|||+|.+ ...+.+.|++.++.-.-. -.-.+.+||+
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka---------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA---------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc---------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 112111 122333444556689999999987 346777888888742110 0123678999
Q ss_pred ecCCCC-------------------------CCCHHHhccccCcch--------HHHHHhhhhcCC-------C--C-CC
Q psy7809 198 ATNHPW-------------------------DLDEALKRRFEKRIS--------PIQIIGLCLGEI-------R--K-DP 234 (343)
Q Consensus 198 ttn~~~-------------------------~l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~--~-~~ 234 (343)
|||... .+.|.++.|++..+. ...|++..+... . + .+
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~ 679 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELT 679 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeC
Confidence 988632 145677778886664 445555554321 1 1 13
Q ss_pred cccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 235 NVDVATLSKQ--LIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 235 ~~~~~~la~~--t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
+..++.|+.. ...|-.+.|+.++++-+..++.+..
T Consensus 680 ~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 680 DDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred HHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 3345567764 3456678999999988888877654
No 143
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=7e-12 Score=115.34 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=114.2
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce----------EEEcCC
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF----------FNVLPS 123 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~----------~~v~~~ 123 (343)
.|++|+|++.+++.+...+... +-+..+||+||+|+||+++|.++|+.+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5889999999999999988643 4467899999999999999999998863321 111112
Q ss_pred ccc---------ccc--------cc--------chHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHH
Q psy7809 124 SLT---------SKH--------YG--------ESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVR 174 (343)
Q Consensus 124 ~l~---------~~~--------~~--------~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~ 174 (343)
++. ++. .+ -....++.+...+.. ....|++||++|.+ .....
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m---------~~~aa 141 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM---------NEAAA 141 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc---------CHHHH
Confidence 211 000 00 011234555444432 23569999999988 34567
Q ss_pred HHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809 175 CELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYS 249 (343)
Q Consensus 175 ~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s 249 (343)
+.|++.|+.. + +.++|.+|+.++.|-++++||+...-. ..++...+-..... ..+.+...++..+.| +
T Consensus 142 NaLLK~LEEP-----p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~G-s 214 (314)
T PRK07399 142 NALLKTLEEP-----G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQG-S 214 (314)
T ss_pred HHHHHHHhCC-----C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCC-C
Confidence 7899999864 3 346778888999999999997654433 33333333322111 112234788888877 5
Q ss_pred HHHHHHHHHH
Q psy7809 250 GSDIRDLCQE 259 (343)
Q Consensus 250 ~~di~~l~~~ 259 (343)
++...++++.
T Consensus 215 ~~~al~~l~~ 224 (314)
T PRK07399 215 PGAAIANIEQ 224 (314)
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 144
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.33 E-value=1.1e-11 Score=114.58 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=93.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-------Cc--eEEEc
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-------ST--FFNVL 121 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~--~~~v~ 121 (343)
.+..|++|+|++++++.+.-.+..+ ...++||+|+||+|||++|++++..+. .+ +..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4577999999999999888644321 235899999999999999999999882 21 11111
Q ss_pred C-Ccc--------cc-------c--------cccch--HHHH-HH--HHHHH--HHcCCcEEEEcccccccCCCCchhhh
Q psy7809 122 P-SSL--------TS-------K--------HYGES--EKLV-RA--LFETA--RARAPAVIFIDEVDAFCSGSREHEAT 170 (343)
Q Consensus 122 ~-~~l--------~~-------~--------~~~~~--~~~i-~~--~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~ 170 (343)
+ .++ .. . ..|.. ...+ .. .|..- .....++|||||++.+ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------~ 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------E 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------C
Confidence 0 000 00 0 01110 0000 00 01100 0011259999999887 3
Q ss_pred HHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHHHhhh
Q psy7809 171 RRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQIIGLC 226 (343)
Q Consensus 171 ~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~il~~~ 226 (343)
..++..|++.|+.-. ....+.++++|+|+|..+ .++++++.||...+. |.++++..
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 456666666664321 001144789999988754 589999999876665 56677664
No 145
>PRK09087 hypothetical protein; Validated
Probab=99.32 E-value=4.1e-11 Score=105.35 Aligned_cols=142 Identities=19% Similarity=0.187 Sum_probs=84.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEA 169 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~ 169 (343)
..++|+||+|+|||||+++++...+.. +++..++... ++.... ..+|+|||++.+.. ...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~---~~~- 104 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAA---EGPVLIEDIDAGGF---DET- 104 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhh---cCeEEEECCCCCCC---CHH-
Confidence 458999999999999999999876554 3333222111 111111 15899999997621 111
Q ss_pred hHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC---CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCc
Q psy7809 170 TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPN 235 (343)
Q Consensus 170 ~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~ 235 (343)
.|...++.... .++.+||+++..|.. ..+.+++||..-.. |..+++..+..... .++
T Consensus 105 ------~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 105 ------GLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred ------HHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 23333322222 124566666655543 25788998854433 88888888876533 345
Q ss_pred ccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 236 VDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 236 ~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
..++.|+++..| +.+.+..++.+..
T Consensus 176 ev~~~La~~~~r-~~~~l~~~l~~L~ 200 (226)
T PRK09087 176 HVVYYLVSRMER-SLFAAQTIVDRLD 200 (226)
T ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 567889988875 4555555554433
No 146
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=4.1e-11 Score=110.84 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=98.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEEcCCccccccccchHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------FFNVLPSSLTSKHYGESEKLVRALFE 142 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~i~~~~~ 142 (343)
+.+..+||+||+|+||+++|+++|+.+.+. ++.+.+.+- +. .-....++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 556789999999999999999999988542 222222110 00 012334555554
Q ss_pred HHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809 143 TARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS 218 (343)
Q Consensus 143 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 218 (343)
.+.. ....|++||++|.| .....+.|++.++.. +.++++|.+|++++.|.+.++||+...-.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m---------~~~aaNaLLK~LEEP-----p~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM---------NRNAANALLKSLEEP-----SGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred HHhhccccCCCeEEEECChhhC---------CHHHHHHHHHHHhCC-----CCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 4432 33569999999988 446788999999864 44789999999999999999998766443
Q ss_pred ----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHH
Q psy7809 219 ----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSD 252 (343)
Q Consensus 219 ----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~d 252 (343)
..++...+........+.+...++..+.|- ++.
T Consensus 163 ~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la~Gs-p~~ 199 (328)
T PRK05707 163 PLPSNEESLQWLQQALPESDERERIELLTLAGGS-PLR 199 (328)
T ss_pred CCcCHHHHHHHHHHhcccCChHHHHHHHHHcCCC-HHH
Confidence 555555544332223344456677777773 443
No 147
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.32 E-value=7.7e-12 Score=101.63 Aligned_cols=113 Identities=28% Similarity=0.346 Sum_probs=70.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc------cccc--hHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK------HYGE--SEKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~------~~~~--~~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
+|+|+||||||||++|+.+|+.++.+++.+.+...... +.-. ........+..+. ..+.+++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 58999999999999999999999999988877553321 1100 0000000000000 14579999999866
Q ss_pred CCCchhhhHHHHHHHhhhcccCCCC--------CCCC------CEEEEEecCCCC----CCCHHHhccc
Q psy7809 163 GSREHEATRRVRCELLSHMDGVGTG--------SGDK------GVLVLAATNHPW----DLDEALKRRF 213 (343)
Q Consensus 163 ~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~------~v~vI~ttn~~~----~l~~~l~~rf 213 (343)
...++..|+..++.-... .... ++.+|+|+|... .+++++++||
T Consensus 78 -------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 -------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 345666666665531110 0011 389999999998 8999999997
No 148
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.31 E-value=5e-11 Score=110.39 Aligned_cols=154 Identities=17% Similarity=0.278 Sum_probs=95.1
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcC
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLP 122 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~ 122 (343)
.+...|.+|+|++++|..|...+..| ...++||.|++|||||++||+++..+. .+|. ..+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 34568999999999999999877654 335899999999999999999987663 1222 000
Q ss_pred -------Cccccc-------------------cccchHHH------HHHHHHHHH---------HcCCcEEEEccccccc
Q psy7809 123 -------SSLTSK-------------------HYGESEKL------VRALFETAR---------ARAPAVIFIDEVDAFC 161 (343)
Q Consensus 123 -------~~l~~~-------------------~~~~~~~~------i~~~~~~a~---------~~~p~il~iDeid~l~ 161 (343)
.++... ..+.+... +...|.... ....++|||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 000000 00111111 111111111 1113699999998883
Q ss_pred CCCCchhhhHHHHHHHhhhccc---------CCCCCCCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHH
Q psy7809 162 SGSREHEATRRVRCELLSHMDG---------VGTGSGDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQI 222 (343)
Q Consensus 162 ~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~i 222 (343)
...+..|+..|+. .. ...+.++++|+|.|..+ .+.+.++.||.-.+. +.+|
T Consensus 158 ---------~~~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 158 ---------DHLVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred ---------HHHHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHH
Confidence 3455566666542 11 11244788888888655 589999999986554 6677
Q ss_pred Hhhh
Q psy7809 223 IGLC 226 (343)
Q Consensus 223 l~~~ 226 (343)
++..
T Consensus 228 l~~~ 231 (350)
T CHL00081 228 VEQR 231 (350)
T ss_pred HHhh
Confidence 7664
No 149
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.28 E-value=4.2e-10 Score=101.64 Aligned_cols=137 Identities=22% Similarity=0.157 Sum_probs=84.8
Q ss_pred CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC------------CCCCCCHHHhccccCc
Q psy7809 149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN------------HPWDLDEALKRRFEKR 216 (343)
Q Consensus 149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn------------~~~~l~~~l~~rf~~~ 216 (343)
|.||||||+|.| .-..+..|.+.|+.- -.++ +|.+|| .|+-++..+++|+--.
T Consensus 292 pGVLFIDEvHmL---------DIE~FsFlnrAlEse-----~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII 356 (450)
T COG1224 292 PGVLFIDEVHML---------DIECFSFLNRALESE-----LAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRLLII 356 (450)
T ss_pred cceEEEechhhh---------hHHHHHHHHHHhhcc-----cCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhheeEE
Confidence 779999999877 223444444555422 1244 455555 4566888888865321
Q ss_pred c----h---HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy7809 217 I----S---PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNI 288 (343)
Q Consensus 217 i----~---r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~ 288 (343)
- . -.+|+++......+ .++..++.|+.....-|-+--.+|+.-|...|.++...
T Consensus 357 ~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~------------------ 418 (450)
T COG1224 357 STRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK------------------ 418 (450)
T ss_pred ecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC------------------
Confidence 1 1 55667666655432 34555777887776666677777877777777776432
Q ss_pred CCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy7809 289 GAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNEL 339 (343)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~ 339 (343)
.|..+|++.|.+-|-.. ..-++..++|...
T Consensus 419 -------------------~V~~~dVe~a~~lF~D~--krSv~~v~~~~~~ 448 (450)
T COG1224 419 -------------------RVEVEDVERAKELFLDV--KRSVEYVEKYEGL 448 (450)
T ss_pred -------------------eeehhHHHHHHHHHhhH--HHHHHHHHHHHhh
Confidence 28889999999888533 1234555555544
No 150
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.27 E-value=4.3e-11 Score=120.31 Aligned_cols=142 Identities=20% Similarity=0.266 Sum_probs=88.9
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-------------------
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG------------------- 114 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~------------------- 114 (343)
.|.+|+|++.++..+.-....+ ...+|||+|++|||||++|++++..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4789999999999888666543 225799999999999999999998872
Q ss_pred ----------------CceEEEcCCccccccccchHHHHHHHHHHH---------HHcCCcEEEEcccccccCCCCchhh
Q psy7809 115 ----------------STFFNVLPSSLTSKHYGESEKLVRALFETA---------RARAPAVIFIDEVDAFCSGSREHEA 169 (343)
Q Consensus 115 ----------------~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a---------~~~~p~il~iDeid~l~~~~~~~~~ 169 (343)
.+|+.+.+.......+|... +...+... .....++|||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l--------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLL--------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhC---------
Confidence 34444433321111112110 11111000 0012259999999888
Q ss_pred hHHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCC-CCCCHHHhccccCcch
Q psy7809 170 TRRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHP-WDLDEALKRRFEKRIS 218 (343)
Q Consensus 170 ~~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~-~~l~~~l~~rf~~~i~ 218 (343)
...+++.|+..|+.-. ....+.++.+|+|+|.. ..+.+.+++||...+.
T Consensus 139 ~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~ 196 (633)
T TIGR02442 139 DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVD 196 (633)
T ss_pred CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEE
Confidence 3456667777665210 00113468999998854 3588999999976554
No 151
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.26 E-value=2.7e-11 Score=112.48 Aligned_cols=135 Identities=25% Similarity=0.328 Sum_probs=96.4
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC----------------------
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------------------- 114 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------------------- 114 (343)
+++|.+.+...+........ ..+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 56777777777776665321 2334699999999999999999999987
Q ss_pred --CceEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC
Q psy7809 115 --STFFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS 188 (343)
Q Consensus 115 --~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 188 (343)
..++++++++..... .....++.+-...... ...|++|||+|.| .....+.++..++..
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m---------t~~A~nallk~lEep---- 136 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL---------TEDAANALLKTLEEP---- 136 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH---------hHHHHHHHHHHhccC----
Confidence 457777776655432 1233344444433322 3469999999988 346788888888765
Q ss_pred CCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809 189 GDKGVLVLAATNHPWDLDEALKRRFEKRI 217 (343)
Q Consensus 189 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i 217 (343)
+.+..+|.+||.++.+-+.+++|+...-
T Consensus 137 -~~~~~~il~~n~~~~il~tI~SRc~~i~ 164 (325)
T COG0470 137 -PKNTRFILITNDPSKILPTIRSRCQRIR 164 (325)
T ss_pred -CCCeEEEEEcCChhhccchhhhcceeee
Confidence 4478999999999999999999654433
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.26 E-value=1.5e-10 Score=119.68 Aligned_cols=200 Identities=21% Similarity=0.210 Sum_probs=121.4
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK---- 128 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~---- 128 (343)
+.|+||+..++.+...+...... + ....+|...+||+||+|+|||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g--l-~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG--L-EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC--C-CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 46899999999998888643110 0 0001222358999999999999999999988 457888887765422
Q ss_pred --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEE
Q psy7809 129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVL 194 (343)
Q Consensus 129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~ 194 (343)
|+|.... ..+....+.+.++||+|||||.. ...+.+.|++.++.-.-.. .-.+.+
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka---------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i 711 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA---------HPDVLELFYQVFDKGVMEDGEGREIDFKNTV 711 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc---------CHHHHHHHHHHhhcceeecCCCcEEeccccE
Confidence 2222111 11233445567789999999876 3456677777776322100 124688
Q ss_pred EEEecCCCC-----------------------------CCCHHHhccccCcch-------HHHHHhhhhcCC--------
Q psy7809 195 VLAATNHPW-----------------------------DLDEALKRRFEKRIS-------PIQIIGLCLGEI-------- 230 (343)
Q Consensus 195 vI~ttn~~~-----------------------------~l~~~l~~rf~~~i~-------r~~il~~~~~~~-------- 230 (343)
||.|||... .+.|++++|++...+ ...|+...+...
T Consensus 712 iI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~ 791 (852)
T TIGR03345 712 ILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENH 791 (852)
T ss_pred EEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988421 134566667752222 333443333221
Q ss_pred CC---CCcccHHHHHHHccC--CCHHHHHHHHHHHHHHHHHHHH
Q psy7809 231 RK---DPNVDVATLSKQLIG--YSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 231 ~~---~~~~~~~~la~~t~g--~s~~di~~l~~~A~~~a~~r~~ 269 (343)
.. .++..++.|+....+ |-.+.|..+++.-+..++.+..
T Consensus 792 gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 792 GAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred CceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 11 123335667777643 4578999999888877776654
No 153
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=2.4e-10 Score=103.01 Aligned_cols=118 Identities=22% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc------cccccccchHH-HHHH-------------------HH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS------LTSKHYGESEK-LVRA-------------------LF 141 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~------l~~~~~~~~~~-~i~~-------------------~~ 141 (343)
...+++|+||||||||++|+++|..++.+++.++|.. +.+.+.+.... .+.. .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4468999999999999999999999999999997754 22222211111 1111 11
Q ss_pred HHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC----CCC-------CCCCEEEEEecCCCC-----CC
Q psy7809 142 ETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG----TGS-------GDKGVLVLAATNHPW-----DL 205 (343)
Q Consensus 142 ~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~----~~~-------~~~~v~vI~ttn~~~-----~l 205 (343)
..|.. .+.+|+|||++.+ ...+.+.|+..|+.-. ... ...++.||+|+|... .+
T Consensus 100 ~~A~~-~g~~lllDEi~r~---------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRS---------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHHHH-cCCEEEEcchhhC---------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 11222 2369999999876 2345555666554311 000 123677999999763 56
Q ss_pred CHHHhccccC
Q psy7809 206 DEALKRRFEK 215 (343)
Q Consensus 206 ~~~l~~rf~~ 215 (343)
++++.+||..
T Consensus 170 ~~aL~~R~~~ 179 (262)
T TIGR02640 170 QDALLDRLIT 179 (262)
T ss_pred cHHHHhhcEE
Confidence 8889888743
No 154
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.26 E-value=6e-11 Score=112.23 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=85.6
Q ss_pred CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEcC----C
Q psy7809 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------FFNVLP----S 123 (343)
Q Consensus 55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------~~~v~~----~ 123 (343)
++++.+.++..+.+...+. ...+++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 4566666666666655553 34689999999999999999999987531 122221 1
Q ss_pred cccccc----ccc--hHHHHHHHHHHHHHc--CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-----------
Q psy7809 124 SLTSKH----YGE--SEKLVRALFETARAR--APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV----------- 184 (343)
Q Consensus 124 ~l~~~~----~~~--~~~~i~~~~~~a~~~--~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~----------- 184 (343)
+++..+ .+- ....+..+...|... .|.+|||||++.-- ..++...++..|+.-
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan--------i~kiFGel~~lLE~~~rg~~~~v~l~ 311 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN--------LSKVFGEVMMLMEHDKRGENWSVPLT 311 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC--------HHHhhhhhhhhccccccccccceeee
Confidence 222111 110 011234445555543 57899999998652 223444444444311
Q ss_pred ------CCCCCCCCEEEEEecCCCC----CCCHHHhccccC
Q psy7809 185 ------GTGSGDKGVLVLAATNHPW----DLDEALKRRFEK 215 (343)
Q Consensus 185 ------~~~~~~~~v~vI~ttn~~~----~l~~~l~~rf~~ 215 (343)
....-+.++.||||+|..+ .+|.+++|||..
T Consensus 312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f 352 (459)
T PRK11331 312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF 352 (459)
T ss_pred ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe
Confidence 0112256899999999887 689999999855
No 155
>PHA02244 ATPase-like protein
Probab=99.26 E-value=2e-10 Score=106.01 Aligned_cols=118 Identities=22% Similarity=0.264 Sum_probs=72.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC----ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS----SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~----~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
....++||+||||||||++|+++|..++.+++.++.. .+.+ +..........-|-.+.. ..++|+|||++.+.+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p 194 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP 194 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCCH
Confidence 4456899999999999999999999999999988742 1111 011110111112222222 347999999987732
Q ss_pred CCCchhhhHHHHHHHhhhccc-----CCCC-CCCCCEEEEEecCCC-----------CCCCHHHhccccC
Q psy7809 163 GSREHEATRRVRCELLSHMDG-----VGTG-SGDKGVLVLAATNHP-----------WDLDEALKRRFEK 215 (343)
Q Consensus 163 ~~~~~~~~~~~~~~ll~~l~~-----~~~~-~~~~~v~vI~ttn~~-----------~~l~~~l~~rf~~ 215 (343)
.++..|...++. .... ....++.+|+|+|.+ ..|++++++||..
T Consensus 195 ---------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~ 255 (383)
T PHA02244 195 ---------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP 255 (383)
T ss_pred ---------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEE
Confidence 233333333321 1110 012478999999974 4578999999864
No 156
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=1.5e-10 Score=107.66 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=94.0
Q ss_pred CCCcccc-cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------------
Q psy7809 54 GWDDIAG-LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------------- 116 (343)
Q Consensus 54 ~~~~l~G-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------------- 116 (343)
.|+.|+| ++.+++.|...+... ..++.+||+||+|+||+++|+.+|+.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 888999998887532 456678999999999999999999887432
Q ss_pred --------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 117 --------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 117 --------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
+..+... +. ......++.+...+. .....|++|||+|.+ .....+.|++.++..
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~---------~~~a~NaLLK~LEEP 137 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM---------TASAANSLLKFLEEP 137 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh---------CHHHHHHHHHHhcCC
Confidence 2222111 00 011233444444332 123469999999888 345678999999864
Q ss_pred CCCCCCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809 185 GTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI 217 (343)
Q Consensus 185 ~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i 217 (343)
+..+++|.+|+.+..+.++++||+...-
T Consensus 138 -----p~~~~~Il~t~~~~~ll~TIrSRc~~i~ 165 (329)
T PRK08058 138 -----SGGTTAILLTENKHQILPTILSRCQVVE 165 (329)
T ss_pred -----CCCceEEEEeCChHhCcHHHHhhceeee
Confidence 4477888899899999999999765443
No 157
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.25 E-value=5.4e-11 Score=99.24 Aligned_cols=128 Identities=23% Similarity=0.349 Sum_probs=87.6
Q ss_pred ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----------------------
Q psy7809 60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST----------------------- 116 (343)
Q Consensus 60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----------------------- 116 (343)
|++++.+.|...+... .-+..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888899998887643 456779999999999999999999877331
Q ss_pred eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 117 FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
++.+....... .-....++.+...+.. ....|++|||+|.| .....+.|++.|+.. +.+
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l---------~~~a~NaLLK~LEep-----p~~ 132 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL---------TEEAQNALLKTLEEP-----PEN 132 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS----------HHHHHHHHHHHHST-----TTT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh---------hHHHHHHHHHHhcCC-----CCC
Confidence 23332221100 1122344554444322 23569999999988 557889999999865 458
Q ss_pred EEEEEecCCCCCCCHHHhccccC
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEK 215 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~ 215 (343)
+++|.+|++++.+.+.++||+..
T Consensus 133 ~~fiL~t~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRSRCQV 155 (162)
T ss_dssp EEEEEEES-GGGS-HHHHTTSEE
T ss_pred EEEEEEECChHHChHHHHhhceE
Confidence 89999999999999999997643
No 158
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.24 E-value=2.2e-10 Score=106.08 Aligned_cols=149 Identities=20% Similarity=0.271 Sum_probs=90.3
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-------CCceE--------
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-------GSTFF-------- 118 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~-------- 118 (343)
.|..|+|++++|..|.-.+..| ...+++|.|++|+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4788999999999987666543 24579999999999999999999776 22221
Q ss_pred -EEcCC-------------------cccc-----ccccchHHHHHHHH-------HH--HHHcCCcEEEEcccccccCCC
Q psy7809 119 -NVLPS-------------------SLTS-----KHYGESEKLVRALF-------ET--ARARAPAVIFIDEVDAFCSGS 164 (343)
Q Consensus 119 -~v~~~-------------------~l~~-----~~~~~~~~~i~~~~-------~~--a~~~~p~il~iDeid~l~~~~ 164 (343)
..+|. ++-. ...|.. .+...+ .. .......+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L---- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL---- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC----
Confidence 00111 0000 111111 011110 00 00112369999999987
Q ss_pred CchhhhHHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHHHhh
Q psy7809 165 REHEATRRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQIIGL 225 (343)
Q Consensus 165 ~~~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~il~~ 225 (343)
....+..|+..|+.-. ....+.++++|+|.|..+ .+++.++.||...+. |.+|++.
T Consensus 144 -----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 144 -----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred -----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 3345556666654210 001134788889988655 689999999876654 5666665
No 159
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.24 E-value=3.7e-11 Score=100.92 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=74.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC----ceEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS----TFFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDA 159 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~----~~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~ 159 (343)
|-.++||.||+|||||.+|+++|..+.. +++.+++.++.... .....+..++..+ ......||+|||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457999999999999999999999996 99999999887610 0011111111111 111124999999999
Q ss_pred ccCC--CCchhhhHHHHHHHhhhcccCCC--C----CCCCCEEEEEecCCCC
Q psy7809 160 FCSG--SREHEATRRVRCELLSHMDGVGT--G----SGDKGVLVLAATNHPW 203 (343)
Q Consensus 160 l~~~--~~~~~~~~~~~~~ll~~l~~~~~--~----~~~~~v~vI~ttn~~~ 203 (343)
..+. .........+++.|++.+++-.- . -.-+++++|+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9762 33334445788888888863111 0 1134789999999654
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.24 E-value=1.6e-10 Score=98.86 Aligned_cols=140 Identities=20% Similarity=0.221 Sum_probs=85.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEEcCCccccccccchHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------FFNVLPSSLTSKHYGESEKLVRALFE 142 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~i~~~~~ 142 (343)
..+..+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 345679999999999999999999987542 22221111 0 011234555555
Q ss_pred HHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809 143 TARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS 218 (343)
Q Consensus 143 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 218 (343)
.+.. ....|++|||+|.+. ....+.|+..++.. +...++|.+++.+..+.+++++|+...-.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~---------~~~~~~Ll~~le~~-----~~~~~~il~~~~~~~l~~~i~sr~~~~~~ 152 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN---------EAAANALLKTLEEP-----PPNTLFILITPSPEKLLPTIRSRCQVLPF 152 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC---------HHHHHHHHHHhcCC-----CCCeEEEEEECChHhChHHHHhhcEEeeC
Confidence 5433 235699999999883 23466788888754 23566777777888999999997642221
Q ss_pred ----HHHHHhhhhcCCCCCCcccHHHHHHHccC
Q psy7809 219 ----PIQIIGLCLGEIRKDPNVDVATLSKQLIG 247 (343)
Q Consensus 219 ----r~~il~~~~~~~~~~~~~~~~~la~~t~g 247 (343)
..++..++... . .++..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~-g-i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ-G-ISEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc-C-CCHHHHHHHHHHcCC
Confidence 33333222222 2 223445666666655
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=2.8e-10 Score=118.21 Aligned_cols=201 Identities=22% Similarity=0.279 Sum_probs=124.4
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc---
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH--- 129 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~--- 129 (343)
+.|+|++.+++.+...+...... + .....|...+||+||+|||||++|+++|..+ +.+++.++++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g--l-~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG--L-SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc--C-CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 46899999999999888642100 0 0001344579999999999999999999987 4678888887764321
Q ss_pred ---------ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC--CC----CCCCCEE
Q psy7809 130 ---------YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG--TG----SGDKGVL 194 (343)
Q Consensus 130 ---------~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~--~~----~~~~~v~ 194 (343)
+|... -..+.........+||+||||+.+ +..+.+.|++.++.-. .. -.-++.+
T Consensus 642 ~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka---------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 642 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA---------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC---------CHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 11111 112233334445579999999877 4467777888775321 10 0123678
Q ss_pred EEEecCCCCC-------------------------CCHHHhccccCcch--------HHHHHhhhhcC-------CC---
Q psy7809 195 VLAATNHPWD-------------------------LDEALKRRFEKRIS--------PIQIIGLCLGE-------IR--- 231 (343)
Q Consensus 195 vI~ttn~~~~-------------------------l~~~l~~rf~~~i~--------r~~il~~~~~~-------~~--- 231 (343)
||+|||.... ..|.++.|++..+. ..+|+...+.. ..
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l 790 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITL 790 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 9999997321 22445556665443 33444433332 11
Q ss_pred CCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 232 KDPNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 232 ~~~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
..++..++.|++.. ..+..+.|+.++++.+...+.+..-
T Consensus 791 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 791 ELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11333455677653 2456899999999999888876653
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.21 E-value=3.6e-10 Score=117.12 Aligned_cols=198 Identities=23% Similarity=0.300 Sum_probs=117.1
Q ss_pred CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc--
Q psy7809 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH-- 129 (343)
Q Consensus 55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~-- 129 (343)
.+.|+|++.+++.+...+...... + .....|...+||+||+|||||++|++++..+ +.+++.++++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~g--l-~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAG--L-SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhc--c-cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 346899999999998887542100 0 0000223468999999999999999999887 4568888887764321
Q ss_pred ----------ccchHHHHHHHHHHH-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC--CCC----CCCCC
Q psy7809 130 ----------YGESEKLVRALFETA-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV--GTG----SGDKG 192 (343)
Q Consensus 130 ----------~~~~~~~i~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~--~~~----~~~~~ 192 (343)
+|... ...+..+ .....+||+|||++.+ ...+.+.|++.++.- ... -.-.+
T Consensus 644 ~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka---------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 644 SRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKA---------HPDVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred HHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhC---------CHHHHHHHHHHHhhCceecCCceEEeecc
Confidence 11110 1122222 3333489999999877 345677777777531 110 01235
Q ss_pred EEEEEecCCCC-------------------------CCCHHHhccccCcch--------HHHHHhhhhcCC-------CC
Q psy7809 193 VLVLAATNHPW-------------------------DLDEALKRRFEKRIS--------PIQIIGLCLGEI-------RK 232 (343)
Q Consensus 193 v~vI~ttn~~~-------------------------~l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~~ 232 (343)
.+||+|||... .+.|+++.|++..+. ...|++.++... ..
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi 791 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGY 791 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67899998631 134567777755443 333333333221 11
Q ss_pred ---CCcccHHHHHHHccCCC----HHHHHHHHHHHHHHHHHHHH
Q psy7809 233 ---DPNVDVATLSKQLIGYS----GSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 233 ---~~~~~~~~la~~t~g~s----~~di~~l~~~A~~~a~~r~~ 269 (343)
.++.-++.|+.. ||+ .+.|+.++++-+...+.+..
T Consensus 792 ~l~is~~al~~L~~~--gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 792 EIHISDEALKLLSEN--GYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred cCcCCHHHHHHHHHc--CCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 122234445543 443 67899999888887776654
No 163
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=2.7e-10 Score=117.94 Aligned_cols=201 Identities=22% Similarity=0.234 Sum_probs=123.2
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK---- 128 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~---- 128 (343)
+.|+||+++++.+...+...... + ....+|..++||+||+|+|||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g--l-~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG--L-KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc--c-cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 46899999999998887532110 0 0011333568999999999999999999987 357888887766432
Q ss_pred --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-CC-----CCCCCEE
Q psy7809 129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-TG-----SGDKGVL 194 (343)
Q Consensus 129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~-----~~~~~v~ 194 (343)
|+|..+ ...+.........+||+|||+|.+ ...+.+.|++.++.-. .. -.-++.+
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka---------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA---------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC---------CHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 111111 122344444455589999999987 4467788888887421 00 0124788
Q ss_pred EEEecCCCCC-------------------------------------CCHHHhccccCcch--------HHHHHhhhhcC
Q psy7809 195 VLAATNHPWD-------------------------------------LDEALKRRFEKRIS--------PIQIIGLCLGE 229 (343)
Q Consensus 195 vI~ttn~~~~-------------------------------------l~~~l~~rf~~~i~--------r~~il~~~~~~ 229 (343)
||+|||.... ..|.+++|++..+. ...|++..+..
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999885321 12455667765554 33444433332
Q ss_pred C-------CCC---CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 230 I-------RKD---PNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 230 ~-------~~~---~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
. ... ++...+.|+... ..|-.+.|+.++++-+..++.+..-
T Consensus 735 l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 735 LFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 1 111 222355677652 2445788999998888877776553
No 164
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.5e-10 Score=115.69 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=122.5
Q ss_pred hHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---
Q psy7809 37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH--- 113 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l--- 113 (343)
...+.....+......-.++-++|.++-++++.+.+... ..++-+|.|+||+|||.++..+|.+.
T Consensus 151 ~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g 218 (786)
T COG0542 151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNG 218 (786)
T ss_pred hhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcC
Confidence 455666666666667778999999999999988888753 33466889999999999999999875
Q ss_pred -------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 114 -------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 114 -------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
+..++.++...+. .+|-|+.+..++.+.+......+.||||||+|.+.+.+...+..-...+-|.-.+.
T Consensus 219 ~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-- 296 (786)
T COG0542 219 DVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-- 296 (786)
T ss_pred CCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--
Confidence 4567888887776 46889999999999999998888999999999999854432212223333333332
Q ss_pred CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch
Q psy7809 185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS 218 (343)
Q Consensus 185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~ 218 (343)
...+-+||+|+..+ .-|++|-|||+....
T Consensus 297 -----RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V 330 (786)
T COG0542 297 -----RGELRCIGATTLDEYRKYIEKDAALERRFQKVLV 330 (786)
T ss_pred -----cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeC
Confidence 23567888887543 358999999988775
No 165
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.6e-10 Score=101.40 Aligned_cols=65 Identities=31% Similarity=0.354 Sum_probs=50.9
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
-|+||++.|+.+.-.+.....+.++-..+ --.|.++|..||+|+|||-+||.+|+..+.||+.+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 37999999999887776544433332222 245789999999999999999999999999998763
No 166
>KOG1969|consensus
Probab=99.20 E-value=3.8e-10 Score=110.16 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=120.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccc----c-------------ChHHHhcc-----CCCCceEEEEcCCCchH
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPK----L-------------MPQLFKGI-----LRPWRGILLFGPPGTGK 102 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~----~-------------~~~~~~~~-----~~~~~~vll~Gp~GtGK 102 (343)
-++.++.+..|.||.|-+.+-+.+..++...- . ..+.+... -++.+-+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 46888999999999998888887777664210 0 00111111 12224588999999999
Q ss_pred HHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809 103 TLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELL 178 (343)
Q Consensus 103 T~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll 178 (343)
||||+.+|+..|+.+++++.++-.+. ......+..+...-. ...|..|+|||||-- .......++
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------~~~~Vdvil 408 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------PRAAVDVIL 408 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC---------cHHHHHHHH
Confidence 99999999999999999999875432 112223333332221 145889999999843 233344444
Q ss_pred hhccc-----CCCCC-----------CCCCEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCC
Q psy7809 179 SHMDG-----VGTGS-----------GDKGVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRK 232 (343)
Q Consensus 179 ~~l~~-----~~~~~-----------~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~ 232 (343)
..+.. .+... +.=...|||.||+... |+|+. -|...+. ..+-|+..+.+...
T Consensus 409 slv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m 486 (877)
T KOG1969|consen 409 SLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM 486 (877)
T ss_pred HHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence 44431 11000 0013568999998664 56654 3444443 11222222222211
Q ss_pred CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809 233 DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 233 ~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~ 266 (343)
..|...|+..++ ++..||+..++.....+..
T Consensus 487 --r~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 487 --RADSKALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred --CCCHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 244455555553 3467888877776666653
No 167
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.19 E-value=2.2e-10 Score=114.27 Aligned_cols=53 Identities=32% Similarity=0.438 Sum_probs=44.8
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.|..-+++++|++++++.+...+.. ..+++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4556788999999999998877752 2489999999999999999999988654
No 168
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=7.2e-10 Score=102.01 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------ 116 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------ 116 (343)
+....+.|...+... +.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 7 LQPTYQQITQAFQQG-----------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 344555555555432 456789999999999999999999887431
Q ss_pred eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 117 FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
++.+.+.+ ++ .-....++.+...+. .....|++||++|.| .....+.|++.++.- +.+
T Consensus 76 ~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m---------~~~AaNaLLKtLEEP-----p~~ 137 (325)
T PRK06871 76 FHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL---------TEAAANALLKTLEEP-----RPN 137 (325)
T ss_pred EEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhh---------CHHHHHHHHHHhcCC-----CCC
Confidence 22222110 00 112334555444433 233469999999988 446788999999854 558
Q ss_pred EEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccC
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIG 247 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g 247 (343)
+++|.+|+.++.|.+.++||+...-. ..++...+..... ........++..+.|
T Consensus 138 ~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~~~~~l~~g 195 (325)
T PRK06871 138 TYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-AEISEILTALRINYG 195 (325)
T ss_pred eEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-cChHHHHHHHHHcCC
Confidence 89999999999999999997655443 4444433332211 222234455566666
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.18 E-value=1.3e-10 Score=93.39 Aligned_cols=74 Identities=31% Similarity=0.504 Sum_probs=57.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCc---eEEEcCCccccc--------------cccchHHHHHHHHHHHHHcCCcE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGST---FFNVLPSSLTSK--------------HYGESEKLVRALFETARARAPAV 151 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~~~~l~~~--------------~~~~~~~~i~~~~~~a~~~~p~i 151 (343)
+..++|+||||||||++++.+|..+... ++.+++...... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 888877654332 11233455677888888877899
Q ss_pred EEEcccccccC
Q psy7809 152 IFIDEVDAFCS 162 (343)
Q Consensus 152 l~iDeid~l~~ 162 (343)
|+|||++.+..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999998864
No 170
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=4.6e-10 Score=102.49 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=77.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc--cccchH----------HHHHHHHHHHHHcCCcEEEEc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK--HYGESE----------KLVRALFETARARAPAVIFID 155 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~--~~~~~~----------~~i~~~~~~a~~~~p~il~iD 155 (343)
..++++|.||||||||++++.+|..++.+++.+++...... ..|... ......+..|.. .+.+|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 34689999999999999999999999999999987655433 222210 001122333332 45789999
Q ss_pred ccccccCCCCchhhhHHHHHHHhhhccc--------CC-CCCCCCCEEEEEecCCCC------------CCCHHHhcccc
Q psy7809 156 EVDAFCSGSREHEATRRVRCELLSHMDG--------VG-TGSGDKGVLVLAATNHPW------------DLDEALKRRFE 214 (343)
Q Consensus 156 eid~l~~~~~~~~~~~~~~~~ll~~l~~--------~~-~~~~~~~v~vI~ttn~~~------------~l~~~l~~rf~ 214 (343)
|+|..-+ .+++.|...++. .. .......+.||+|.|..+ .+++++++||.
T Consensus 142 Ein~a~p---------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 142 EYDAGRP---------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhhccCH---------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 9997722 333343333331 11 111233688999999854 36899999997
Q ss_pred Ccc
Q psy7809 215 KRI 217 (343)
Q Consensus 215 ~~i 217 (343)
..+
T Consensus 213 i~~ 215 (327)
T TIGR01650 213 IVT 215 (327)
T ss_pred eEe
Confidence 654
No 171
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=1.2e-09 Score=101.34 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=94.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEEcCCccccccccchHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------FFNVLPSSLTSKHYGESEKLVRALFE 142 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~i~~~~~ 142 (343)
+.+..+||+||+|+||+++|.++|..+-+. ++.+.+..- . ..-..+.++.+..
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHHH
Confidence 556789999999999999999999887431 222222100 0 0011233444444
Q ss_pred HH----HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809 143 TA----RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS 218 (343)
Q Consensus 143 ~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 218 (343)
.+ ......|++||++|.| .....|.|++.|++- +.++++|.+|+.++.|.+.++||+.....
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~t~fiL~t~~~~~lLpTIrSRCq~~~~ 164 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALL---------TDAAANALLKTLEEP-----PENTWFFLACREPARLLATLRSRCRLHYL 164 (334)
T ss_pred HHhhccccCCceEEEEcchHhh---------CHHHHHHHHHHhcCC-----CCCeEEEEEECChhhChHHHHhccccccC
Confidence 33 3334569999999988 446788999999854 55889999999999999999998775443
Q ss_pred ----HHHHHhhhhcCCCCCCcccHHHHHHHccCC
Q psy7809 219 ----PIQIIGLCLGEIRKDPNVDVATLSKQLIGY 248 (343)
Q Consensus 219 ----r~~il~~~~~~~~~~~~~~~~~la~~t~g~ 248 (343)
..++.......... +......++..+.|-
T Consensus 165 ~~~~~~~~~~~L~~~~~~-~~~~a~~~~~la~G~ 197 (334)
T PRK07993 165 APPPEQYALTWLSREVTM-SQDALLAALRLSAGA 197 (334)
T ss_pred CCCCHHHHHHHHHHccCC-CHHHHHHHHHHcCCC
Confidence 44444333333222 233355667777774
No 172
>KOG0990|consensus
Probab=99.15 E-value=1.4e-10 Score=103.41 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=100.7
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc------e
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST------F 117 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------~ 117 (343)
-++.+++++..+.++++++++...+.++...+ ...+.|+|||||+|||+...+.|..+..+ +
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCC------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 46789999999999999999999999885433 22389999999999999999999998764 1
Q ss_pred EEEcCCccccccccchHHHHHHHHHHHHH-------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCC
Q psy7809 118 FNVLPSSLTSKHYGESEKLVRALFETARA-------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGD 190 (343)
Q Consensus 118 ~~v~~~~l~~~~~~~~~~~i~~~~~~a~~-------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 190 (343)
..++.++-.+- .....-...|..++. ..+.++++||+|.+ ....+++|.+.++.+..
T Consensus 97 lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM---------T~~AQnALRRviek~t~---- 160 (360)
T KOG0990|consen 97 LELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM---------TRDAQNALRRVIEKYTA---- 160 (360)
T ss_pred HHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh---------hHHHHHHHHHHHHHhcc----
Confidence 12222221111 111222233444432 25679999999988 44667777777766633
Q ss_pred CCEEEEEecCCCCCCCHHHhcccc
Q psy7809 191 KGVLVLAATNHPWDLDEALKRRFE 214 (343)
Q Consensus 191 ~~v~vI~ttn~~~~l~~~l~~rf~ 214 (343)
++.++..+|.+..+.+++++||.
T Consensus 161 -n~rF~ii~n~~~ki~pa~qsRct 183 (360)
T KOG0990|consen 161 -NTRFATISNPPQKIHPAQQSRCT 183 (360)
T ss_pred -ceEEEEeccChhhcCchhhcccc
Confidence 56777889999999999998654
No 173
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.15 E-value=1.5e-10 Score=107.83 Aligned_cols=138 Identities=29% Similarity=0.358 Sum_probs=89.5
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc--ccchH
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH--YGESE 134 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~--~~~~~ 134 (343)
.++|.++++..+...+. ...++||.||||||||++|+++|..++.+|+.+.|....... .|...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 36777777777665553 346899999999999999999999999999999886543221 11110
Q ss_pred HHH----HHHHHHHHH--cCC--cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC------C-CCCCCCEEEEEec
Q psy7809 135 KLV----RALFETARA--RAP--AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG------T-GSGDKGVLVLAAT 199 (343)
Q Consensus 135 ~~i----~~~~~~a~~--~~p--~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~------~-~~~~~~v~vI~tt 199 (343)
-.. ...|..... ... +|+++|||+.. ...+.+.|+..|+... . ..-+..++||+|.
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra---------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~ 161 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA---------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ 161 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC---------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence 000 000000000 001 39999999765 4466777777776411 1 1124578899999
Q ss_pred C-----CCCCCCHHHhccccCcc
Q psy7809 200 N-----HPWDLDEALKRRFEKRI 217 (343)
Q Consensus 200 n-----~~~~l~~~l~~rf~~~i 217 (343)
| ....+++++++||...+
T Consensus 162 Np~e~~g~~~l~eA~ldRf~~~~ 184 (329)
T COG0714 162 NPGEYEGTYPLPEALLDRFLLRI 184 (329)
T ss_pred CccccCCCcCCCHHHHhhEEEEE
Confidence 9 55678999999985443
No 174
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.15 E-value=2.5e-10 Score=111.02 Aligned_cols=176 Identities=22% Similarity=0.241 Sum_probs=102.9
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----------------
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS----------------- 115 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~----------------- 115 (343)
..|+++.|+..+++.+.-.+ ....+++|.||||||||++++.++..+..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 37899999999988777544 34468999999999999999999875421
Q ss_pred -----------ceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 116 -----------TFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 116 -----------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
+|...++.......+|+....-...+..| ..++|||||++.+ ...++..|+..|+.-
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~---------~~~~~~~L~~~LE~~ 322 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF---------KRSVLDALREPIEDG 322 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC---------CHHHHHHHHHHHHcC
Confidence 11111111000000111000001122222 2379999999877 345666666666432
Q ss_pred C--------CCCCCCCEEEEEecCCC-----C------------------CCCHHHhccccCcchHHHHHhhhhcCCCCC
Q psy7809 185 G--------TGSGDKGVLVLAATNHP-----W------------------DLDEALKRRFEKRISPIQIIGLCLGEIRKD 233 (343)
Q Consensus 185 ~--------~~~~~~~v~vI~ttn~~-----~------------------~l~~~l~~rf~~~i~r~~il~~~~~~~~~~ 233 (343)
. ....+.++.+|+++|.. . .+...+++||+..+. .
T Consensus 323 ~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~--------------~ 388 (499)
T TIGR00368 323 SISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVE--------------V 388 (499)
T ss_pred cEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEE--------------E
Confidence 1 01113478899999863 1 244445555554442 1
Q ss_pred CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 234 PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 234 ~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
..++...+.....+-+..++++-+..|......|.
T Consensus 389 ~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~ 423 (499)
T TIGR00368 389 PLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRY 423 (499)
T ss_pred cCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 22334455555567788889888888877766664
No 175
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.6e-11 Score=105.72 Aligned_cols=95 Identities=33% Similarity=0.499 Sum_probs=72.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccch-HHHHHHHHHHHHH----cCCcEEEEcccccccCC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGES-EKLVRALFETARA----RAPAVIFIDEVDAFCSG 163 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~~-~~~i~~~~~~a~~----~~p~il~iDeid~l~~~ 163 (343)
.++||.||+|||||.||+.+|+.++.||...++..+.. .|+|+- +..+..++..|.. ...+|++|||||++...
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 57999999999999999999999999999999988874 567764 4445566555522 23479999999999874
Q ss_pred CCc-----hhhhHHHHHHHhhhcccC
Q psy7809 164 SRE-----HEATRRVRCELLSHMDGV 184 (343)
Q Consensus 164 ~~~-----~~~~~~~~~~ll~~l~~~ 184 (343)
... .....-++.+|++.+++-
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCc
Confidence 221 123345778899988863
No 176
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.15 E-value=1.7e-11 Score=96.11 Aligned_cols=108 Identities=29% Similarity=0.346 Sum_probs=60.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC-ccc-----cccccchHH-H----HHHHHHHHHHcCCcEEEEccccc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS-SLT-----SKHYGESEK-L----VRALFETARARAPAVIFIDEVDA 159 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~-~l~-----~~~~~~~~~-~----i~~~~~~a~~~~p~il~iDeid~ 159 (343)
++||+|+||+|||++|+++|+.++..|..|.+. ++. +..+-.... . -.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888663 222 111110000 0 00011 14999999965
Q ss_pred ccCCCCchhhhHHHHHHHhhhcccCCCC------CCCCCEEEEEecCCCC-----CCCHHHhcccc
Q psy7809 160 FCSGSREHEATRRVRCELLSHMDGVGTG------SGDKGVLVLAATNHPW-----DLDEALKRRFE 214 (343)
Q Consensus 160 l~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~v~vI~ttn~~~-----~l~~~l~~rf~ 214 (343)
. ..+.++.|++.|.+..-. .-+..++||+|.|..+ .|++++++||-
T Consensus 74 a---------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 A---------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred C---------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 4 557788888887642211 1245789999999876 58899999883
No 177
>KOG0741|consensus
Probab=99.14 E-value=2.3e-10 Score=107.94 Aligned_cols=130 Identities=22% Similarity=0.350 Sum_probs=93.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc-CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC-C
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-S 164 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~-~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-~ 164 (343)
.+-.++||.||||+|||+||-.+|...+.||+.+- +.++.+..-...-..+..+|..|+...-+||++|+++.|+.- +
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP 615 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc
Confidence 45578999999999999999999999999998764 445554433334556999999999988899999999999762 3
Q ss_pred CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH-HHhccccCcch
Q psy7809 165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE-ALKRRFEKRIS 218 (343)
Q Consensus 165 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~-~l~~rf~~~i~ 218 (343)
-+-..+..++.+|+..+...... ..+.+|++||+..+-|.. .+...|+..++
T Consensus 616 IGPRfSN~vlQaL~VllK~~ppk--g~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPPK--GRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCCC--CceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 33345666777777777654332 346788888887554432 33346665554
No 178
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.14 E-value=1.8e-11 Score=104.30 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=37.5
Q ss_pred CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
|+||+||+.+|++|.-... .+.++||+||||||||++|+++...+
T Consensus 2 f~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999997664 34699999999999999999999765
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-10 Score=116.54 Aligned_cols=200 Identities=22% Similarity=0.273 Sum_probs=126.7
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCccccc----
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLTSK---- 128 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~~~---- 128 (343)
+.|+||+++...+...+...... .....+|..++||.||+|+|||-||+++|..+. ..++.++++++..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaG---L~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAG---LGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 46899999999999888642110 001124556788999999999999999999996 78999999887643
Q ss_pred --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC--CCCC----CCCCEE
Q psy7809 129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV--GTGS----GDKGVL 194 (343)
Q Consensus 129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~--~~~~----~~~~v~ 194 (343)
|+|.-+ -..+-...+....+||+||||++- +..+++.|++.||.= .... .-++.+
T Consensus 568 rLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA---------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNti 636 (786)
T COG0542 568 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA---------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTI 636 (786)
T ss_pred HHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc---------CHHHHHHHHHHhcCCeeecCCCCEEecceeE
Confidence 333222 112333344555789999999755 668999999999831 1111 123688
Q ss_pred EEEecCCCCC----------------------------CCHHHhccccCcch--------HHHHHhhhhcCC-------C
Q psy7809 195 VLAATNHPWD----------------------------LDEALKRRFEKRIS--------PIQIIGLCLGEI-------R 231 (343)
Q Consensus 195 vI~ttn~~~~----------------------------l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~ 231 (343)
||.|+|--.. ..|.++.|++..|. ..+|+...+... .
T Consensus 637 IImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~ 716 (786)
T COG0542 637 IIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERG 716 (786)
T ss_pred EEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999983210 23555557775554 334444433322 1
Q ss_pred CC---CcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 232 KD---PNVDVATLSKQLI--GYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 232 ~~---~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
.. ++.-.+.|+...- .|-++-|+.++++-+...+.+..
T Consensus 717 i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 717 ITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred ceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 11 2223445665542 45577888888877777666554
No 180
>PRK04132 replication factor C small subunit; Provisional
Probab=99.12 E-value=3.7e-09 Score=107.81 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=101.1
Q ss_pred ceEEEEc--CCCchHHHHHHHHHHHh-----CCceEEEcCCccccccccchHHHHHHHHHHHHHcC------CcEEEEcc
Q psy7809 90 RGILLFG--PPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSKHYGESEKLVRALFETARARA------PAVIFIDE 156 (343)
Q Consensus 90 ~~vll~G--p~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~------p~il~iDe 156 (343)
-+-+..| |++.||||+|+++|+++ +.+++++++++..+. ..++.+...+.... ..|+||||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3456778 99999999999999998 457999999875332 23555444333222 35999999
Q ss_pred cccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcC
Q psy7809 157 VDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGE 229 (343)
Q Consensus 157 id~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~ 229 (343)
+|.|. ...++.|+..|+.. +.++.+|++||+++.+.++++||+...-. ..+ .++..+..
T Consensus 639 aD~Lt---------~~AQnALLk~lEep-----~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 639 ADALT---------QDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred cccCC---------HHHHHHHHHHhhCC-----CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHh
Confidence 99992 35677899998865 34788999999999999999997543322 222 23333333
Q ss_pred CCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 230 IRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 230 ~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
... .++..+..++..+.|- .+..-++++.+
T Consensus 705 Egi~i~~e~L~~Ia~~s~GD-lR~AIn~Lq~~ 735 (846)
T PRK04132 705 EGLELTEEGLQAILYIAEGD-MRRAINILQAA 735 (846)
T ss_pred cCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 222 2455678888888873 44444555543
No 181
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.11 E-value=9.8e-10 Score=108.00 Aligned_cols=150 Identities=24% Similarity=0.246 Sum_probs=85.0
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE----cCCccccccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV----LPSSLTSKHY 130 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v----~~~~l~~~~~ 130 (343)
..+.|++.+|..+.-.+...-. +....+ ......++||+|+||+|||++|++++.......+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 4678888888877765543210 000000 123345899999999999999999998875443222 2222211110
Q ss_pred cch--HH-HH-HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC---C-----CCCCCCEEEEEe
Q psy7809 131 GES--EK-LV-RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG---T-----GSGDKGVLVLAA 198 (343)
Q Consensus 131 ~~~--~~-~i-~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~---~-----~~~~~~v~vI~t 198 (343)
... .. .+ ...+.. ...++++|||+|.+- ......|++.|+.-. . ..-+.++.||+|
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~---------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa 349 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMD---------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAA 349 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCC---------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEE
Confidence 000 00 00 000111 123699999999883 234445555554211 0 001347889999
Q ss_pred cCCCC-------------CCCHHHhccccCcch
Q psy7809 199 TNHPW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 199 tn~~~-------------~l~~~l~~rf~~~i~ 218 (343)
+|..+ .|++++++||+-.+.
T Consensus 350 ~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~ 382 (509)
T smart00350 350 ANPIGGRYDPKLTPEENIDLPAPILSRFDLLFV 382 (509)
T ss_pred eCCCCcccCCCcChhhccCCChHHhCceeeEEE
Confidence 99753 589999999977554
No 182
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.09 E-value=2.4e-09 Score=96.16 Aligned_cols=201 Identities=16% Similarity=0.171 Sum_probs=116.9
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---------CceEEEcC
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------STFFNVLP 122 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------~~~~~v~~ 122 (343)
.-.|=.......+.+.|.+.+..|.. ....++||+|++|.|||++++.++.... .+++.+.+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~ 103 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM 103 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec
Confidence 34454444456666777777766632 3456899999999999999999987542 35666654
Q ss_pred Cccccc--------------c--ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809 123 SSLTSK--------------H--YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 123 ~~l~~~--------------~--~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
+.-.+. + -....+....+....+..++.+|+|||++.++.+... ....+++.| +.+ ++
T Consensus 104 P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~--~qr~~Ln~L-K~L---~N 177 (302)
T PF05621_consen 104 PPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR--KQREFLNAL-KFL---GN 177 (302)
T ss_pred CCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH--HHHHHHHHH-HHH---hh
Confidence 322110 0 0112233344455666777889999999997653211 122233322 222 21
Q ss_pred CCCCCCEEEEEecCCCC--CCCHHHhccccCcch--------HHHHHhhhhcCCCC--CCc----ccHHHHHHHccCCCH
Q psy7809 187 GSGDKGVLVLAATNHPW--DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK--DPN----VDVATLSKQLIGYSG 250 (343)
Q Consensus 187 ~~~~~~v~vI~ttn~~~--~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~--~~~----~~~~~la~~t~g~s~ 250 (343)
.- .-.++.+||..-.. .-|+.+.+||.-... ...++..+-....+ .+. .-...|-..|+| +-
T Consensus 178 eL-~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G-~i 255 (302)
T PF05621_consen 178 EL-QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG-LI 255 (302)
T ss_pred cc-CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-ch
Confidence 11 22456666543222 236788888876554 33444444333322 122 223467778888 47
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7809 251 SDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 251 ~di~~l~~~A~~~a~~r~~ 269 (343)
++|..++..|...|++...
T Consensus 256 G~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 256 GELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 8999999999999987643
No 183
>PRK12377 putative replication protein; Provisional
Probab=99.09 E-value=5e-10 Score=99.37 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=74.4
Q ss_pred cCCCCCCCccc----ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 49 TDTGVGWDDIA----GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 49 ~~~~~~~~~l~----G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
.....+|+++. |+..+...+..++.... ....+++|+||||||||+||.++|+++ +..+++++
T Consensus 67 ~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 67 LHRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred ccccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34456788875 33344555554443221 234689999999999999999999887 56677777
Q ss_pred CCccccccccchH--HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 122 PSSLTSKHYGESE--KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 122 ~~~l~~~~~~~~~--~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
..++......... .....++... ....+|+|||++.... +..... .|...++..... ...+|.||
T Consensus 137 ~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~----s~~~~~---~l~~ii~~R~~~----~~ptiitS 203 (248)
T PRK12377 137 VPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE----TKNEQV---VLNQIIDRRTAS----MRSVGMLT 203 (248)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC----CHHHHH---HHHHHHHHHHhc----CCCEEEEc
Confidence 6665543211100 0111222222 3457999999976532 122223 344444433221 23467788
Q ss_pred CCC
Q psy7809 200 NHP 202 (343)
Q Consensus 200 n~~ 202 (343)
|..
T Consensus 204 Nl~ 206 (248)
T PRK12377 204 NLN 206 (248)
T ss_pred CCC
Confidence 864
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=4.1e-09 Score=96.90 Aligned_cols=163 Identities=19% Similarity=0.222 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------------------eEE
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------------------FFN 119 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------------------~~~ 119 (343)
++.+.+.+...+... +-+..+||+||+|+||+++|.++|+.+-+. ++.
T Consensus 9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 455566666555432 456689999999999999999999876432 222
Q ss_pred E--cCCccccc-cccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 120 V--LPSSLTSK-HYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 120 v--~~~~l~~~-~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
+ .+.+-..+ ...-..+.++.+.+.+... ...|++||++|.| .....|.|++.|+.. +.+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~ 143 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI---------NRAACNALLKTLEEP-----SPG 143 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh---------CHHHHHHHHHHhhCC-----CCC
Confidence 2 11100000 0001233455555544332 2359999999988 446788999999864 447
Q ss_pred EEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCH
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSG 250 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~ 250 (343)
+++|.+|+.++.|.+.++||+...-. ..++....... . .+..+...++..+.|-.+
T Consensus 144 ~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 144 RYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-VSERAAQEALDAARGHPG 203 (319)
T ss_pred CeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-CChHHHHHHHHHcCCCHH
Confidence 78999999999999999998765443 45555444432 2 223335567777777433
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=1.1e-09 Score=108.74 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=75.3
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE-Ec-
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN-VL- 121 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~-v~- 121 (343)
..+.+++.+.++++|+|+++.++.+..++...... ..+...++|+||+|||||++++.+|++++..+++ .+
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 35788999999999999999999998887543211 1233458999999999999999999998865433 21
Q ss_pred --CCccccc------------cccchHHHHHHHHHHHHH----------cCCcEEEEcccccccC
Q psy7809 122 --PSSLTSK------------HYGESEKLVRALFETARA----------RAPAVIFIDEVDAFCS 162 (343)
Q Consensus 122 --~~~l~~~------------~~~~~~~~i~~~~~~a~~----------~~p~il~iDeid~l~~ 162 (343)
+...... .+......+..++..+.. ....||+|||++.++.
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~ 209 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY 209 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch
Confidence 1111000 011223445555555542 2346999999998753
No 186
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=6.1e-09 Score=94.12 Aligned_cols=184 Identities=18% Similarity=0.183 Sum_probs=99.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCC-ceEE---EcCC----c----ccc----ccccc-hHHHHHHH---H-HHHHHc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGS-TFFN---VLPS----S----LTS----KHYGE-SEKLVRAL---F-ETARAR 147 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~---v~~~----~----l~~----~~~~~-~~~~i~~~---~-~~a~~~ 147 (343)
+..++|+||+|+|||++++.++..+.. .+.. +.+. + +.. ...+. ....+..+ + ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346889999999999999999998763 2221 1110 0 000 00011 11112222 2 222345
Q ss_pred CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC---CC----CHHHhccccCcch--
Q psy7809 148 APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW---DL----DEALKRRFEKRIS-- 218 (343)
Q Consensus 148 ~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~---~l----~~~l~~rf~~~i~-- 218 (343)
.+.+|+|||++.+.. .....+..+... .... ...+.|+.+. .++ .+ ...+.+|+...+.
T Consensus 123 ~~~vliiDe~~~l~~------~~~~~l~~l~~~----~~~~-~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 123 KRALLVVDEAQNLTP------ELLEELRMLSNF----QTDN-AKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CCeEEEEECcccCCH------HHHHHHHHHhCc----ccCC-CCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 567999999998731 111122222221 1111 1123333333 222 11 1234455544443
Q ss_pred ------HHHHHhhhhcCC-----CCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy7809 219 ------PIQIIGLCLGEI-----RKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNN 287 (343)
Q Consensus 219 ------r~~il~~~~~~~-----~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~ 287 (343)
-..++...+... ...++..++.|++.+.|. ++.|..+|..|+..|..+...
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~----------------- 252 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKR----------------- 252 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCC-----------------
Confidence 233344333322 123456688899999996 677999999998888765321
Q ss_pred CCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 288 IGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
. |+.+++..++..+.
T Consensus 253 -------------~-------i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 253 -------------E-------IGGEEVREVIAEID 267 (269)
T ss_pred -------------C-------CCHHHHHHHHHHhh
Confidence 3 99999999998764
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.3e-08 Score=94.43 Aligned_cols=147 Identities=20% Similarity=0.168 Sum_probs=92.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCce-------------------------EEEcCCccc---------------
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTF-------------------------FNVLPSSLT--------------- 126 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-------------------------~~v~~~~l~--------------- 126 (343)
+.+.++||+||+|+||+++|+.+|+.+.+.. +.+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5667899999999999999999998875421 222111000
Q ss_pred ---cc----c-ccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809 127 ---SK----H-YGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL 194 (343)
Q Consensus 127 ---~~----~-~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 194 (343)
++ . ..-..+.++.+...+.. ....|++||++|.| .....|.|++.+++- +.+++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~t~ 164 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL---------NVAAANALLKTLEEP-----PPGTV 164 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc---------CHHHHHHHHHHhcCC-----CcCcE
Confidence 00 0 00112345555544422 22459999999998 446788999999854 55889
Q ss_pred EEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHH
Q psy7809 195 VLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSD 252 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~d 252 (343)
+|.+|++++.|.+.++||+...-. ..++...+... ... +...++..+.| +++.
T Consensus 165 fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~---~~~~~l~~~~G-sp~~ 221 (342)
T PRK06964 165 FLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA---DADALLAEAGG-APLA 221 (342)
T ss_pred EEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC---hHHHHHHHcCC-CHHH
Confidence 999999999999999998754333 44554444332 221 12345566656 4443
No 188
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=9.2e-09 Score=94.47 Aligned_cols=162 Identities=19% Similarity=0.136 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----------------------e
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----------------------F 117 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----------------------~ 117 (343)
+....+.+...+... +.+..+||+||.|+||+++|+.+|+.+-+. +
T Consensus 8 l~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 455566666555432 556789999999999999999999876431 2
Q ss_pred EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809 118 FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV 193 (343)
Q Consensus 118 ~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 193 (343)
+.+.+.. .++ .-..+.++.+...+.. ....|++||++|.| .....|.|++.+++- +.++
T Consensus 77 ~~i~p~~-~~~--~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~t 139 (319)
T PRK06090 77 HVIKPEK-EGK--SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM---------NESASNALLKTLEEP-----APNC 139 (319)
T ss_pred EEEecCc-CCC--cCCHHHHHHHHHHHhhCcccCCceEEEecchhhh---------CHHHHHHHHHHhcCC-----CCCe
Confidence 2232211 000 0122344554444422 23469999999988 446788999999854 5578
Q ss_pred EEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH
Q psy7809 194 LVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD 255 (343)
Q Consensus 194 ~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~ 255 (343)
++|.+|+.++.|-|.++||+...-. ..++...... .... ....++..+.| ++.....
T Consensus 140 ~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~-~~~~---~~~~~l~l~~G-~p~~A~~ 200 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKG-QGIT---VPAYALKLNMG-SPLKTLA 200 (319)
T ss_pred EEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHH-cCCc---hHHHHHHHcCC-CHHHHHH
Confidence 9999999999999999998765433 4455444433 2221 23455666666 4443333
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.02 E-value=1.6e-09 Score=95.96 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=76.0
Q ss_pred cCCCCCCCcccc----cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 49 TDTGVGWDDIAG----LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 49 ~~~~~~~~~l~G----~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
.....+|+++.- +..+...+..++... .....+++|+|++|||||+|+.++|.++ +..+++++
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~----------~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF----------DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh----------ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345678888752 233444444444221 1223589999999999999999999988 66788887
Q ss_pred CCccccccccch---HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 122 PSSLTSKHYGES---EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 122 ~~~l~~~~~~~~---~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
..++........ ......++.... ..++|+|||++.... ......++..++..- +. .+..+|.|
T Consensus 135 ~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~----s~~~~~~l~~Ii~~R---y~----~~~~tiit 201 (244)
T PRK07952 135 VADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE----SRYEKVIINQIVDRR---SS----SKRPTGML 201 (244)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC----CHHHHHHHHHHHHHH---Hh----CCCCEEEe
Confidence 777664322110 111223333322 457999999987632 223334444444432 11 12357777
Q ss_pred cCCC
Q psy7809 199 TNHP 202 (343)
Q Consensus 199 tn~~ 202 (343)
||..
T Consensus 202 SNl~ 205 (244)
T PRK07952 202 TNSN 205 (244)
T ss_pred CCCC
Confidence 7754
No 190
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.01 E-value=5.9e-10 Score=106.17 Aligned_cols=145 Identities=23% Similarity=0.353 Sum_probs=94.9
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL 125 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l 125 (343)
.....+|++|+|......++.+.+... .....+|||.|.+||||..+|++|=+.. +.||+.++|..+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 344578999999887777776655432 1556789999999999999999996554 679999999765
Q ss_pred cccc---------ccchHHH----HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCC
Q psy7809 126 TSKH---------YGESEKL----VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTG 187 (343)
Q Consensus 126 ~~~~---------~~~~~~~----i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~ 187 (343)
-... .|..... -..+|..|.. +-||||||..| +..++..|+..++. +.+.
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem---------pl~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM---------PLPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC---------CHHHHHHHHHHHhhceEEecCCC
Confidence 4321 1111111 1234444433 58999999766 55777888887763 2222
Q ss_pred C-CCCCEEEEEecCCCCCCCHHHhc-cccCcc
Q psy7809 188 S-GDKGVLVLAATNHPWDLDEALKR-RFEKRI 217 (343)
Q Consensus 188 ~-~~~~v~vI~ttn~~~~l~~~l~~-rf~~~i 217 (343)
. .+..|.||++||. .|.+.+.. +|..-+
T Consensus 376 ~~~~vDVRIIAATN~--nL~~~i~~G~FReDL 405 (560)
T COG3829 376 KPIPVDVRIIAATNR--NLEKMIAEGTFREDL 405 (560)
T ss_pred CceeeEEEEEeccCc--CHHHHHhcCcchhhh
Confidence 2 1236889999997 34444444 444433
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=4.9e-09 Score=87.80 Aligned_cols=122 Identities=23% Similarity=0.372 Sum_probs=71.7
Q ss_pred ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc----
Q psy7809 58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY---- 130 (343)
Q Consensus 58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~---- 130 (343)
|+|.....+.+.+.+.... ..+.+|||+|++||||+.+|++|-+.. +.+|+.++|..+.....
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 3565555555555443221 345789999999999999999998765 46899999987643211
Q ss_pred -cch-------HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-----CCCC-CCCCEEEE
Q psy7809 131 -GES-------EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV-----GTGS-GDKGVLVL 196 (343)
Q Consensus 131 -~~~-------~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~-~~~~v~vI 196 (343)
|.. ...-..+|..|. .+.||||||+.| +..++..|+..|+.- .... ...++.||
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~---~GtL~Ld~I~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 138 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQAN---GGTLFLDEIEDL---------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRII 138 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTT---TSEEEEETGGGS----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEE
T ss_pred hccccccccccccccCCceeecc---ceEEeecchhhh---------HHHHHHHHHHHHhhchhccccccccccccceEE
Confidence 100 000113344333 379999999988 446666777777621 1110 12368889
Q ss_pred EecCC
Q psy7809 197 AATNH 201 (343)
Q Consensus 197 ~ttn~ 201 (343)
++|+.
T Consensus 139 ~st~~ 143 (168)
T PF00158_consen 139 ASTSK 143 (168)
T ss_dssp EEESS
T ss_pred eecCc
Confidence 99886
No 192
>KOG1514|consensus
Probab=98.99 E-value=2.2e-08 Score=97.72 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=120.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC----------CceEEEcCCccccc----------cccch------HHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG----------STFFNVLPSSLTSK----------HYGES------EKLVRALFET 143 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~----------~~~~~v~~~~l~~~----------~~~~~------~~~i~~~~~~ 143 (343)
..+++.|-||||||.+++.+-+++. ..+++++.-.+.+. ..+.. -..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3688999999999999999977653 45677776555431 01110 1111112220
Q ss_pred H-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----
Q psy7809 144 A-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS---- 218 (343)
Q Consensus 144 a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~---- 218 (343)
. ....++||+|||+|.|+.. ...++..|..+... +..+++||+.+|..+....-+..|...++.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr------~QdVlYn~fdWpt~-----~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi 571 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTR------SQDVLYNIFDWPTL-----KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRI 571 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcc------cHHHHHHHhcCCcC-----CCCceEEEEecccccCHHHHhccchhhhccceee
Confidence 0 1234679999999999753 23455555555432 245788888888766433222212222221
Q ss_pred ---------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy7809 219 ---------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSG--SDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNN 287 (343)
Q Consensus 219 ---------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~--~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~ 287 (343)
..+|+...+..........+.-+|+..+..|| +--.++|++|...|..+... +
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~--~-------------- 635 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVK--G-------------- 635 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccc--c--------------
Confidence 66777777766533333445556666655443 22347899999998877652 0
Q ss_pred CCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy7809 288 IGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWN 337 (343)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~ 337 (343)
. ....-.|+.-||.+|+..+..+.-..-++..-...
T Consensus 636 -----k---------~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~ 671 (767)
T KOG1514|consen 636 -----K---------LAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQ 671 (767)
T ss_pred -----c---------ccccceeehHHHHHHHHHHhhhhHHHHhcchHHHH
Confidence 0 00011388899999999997654444444443333
No 193
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.99 E-value=8.6e-09 Score=102.75 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=81.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCccccccccchHHHHHHHHHHH---------HHcCCcEEEEccc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSKHYGESEKLVRALFETA---------RARAPAVIFIDEV 157 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~l~~~~~~~~~~~i~~~~~~a---------~~~~p~il~iDei 157 (343)
-.+|||.|+||||||++|++++..+.. +|+.+.+.......+|.. .+...+... .....++|||||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 358999999999999999999998764 577776432222222321 011101000 0012259999999
Q ss_pred ccccCCCCchhhhHHHHHHHhhhcccCC-------C-CCCCCCEEEEEecCCCC---CCCHHHhccccCcch--------
Q psy7809 158 DAFCSGSREHEATRRVRCELLSHMDGVG-------T-GSGDKGVLVLAATNHPW---DLDEALKRRFEKRIS-------- 218 (343)
Q Consensus 158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~-------~-~~~~~~v~vI~ttn~~~---~l~~~l~~rf~~~i~-------- 218 (343)
+.+ ...++..|+..|+.-. . ...+.++.||+|+|..+ .+.+.++.||...+.
T Consensus 94 ~rl---------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~ 164 (589)
T TIGR02031 94 NLL---------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQD 164 (589)
T ss_pred hhC---------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHH
Confidence 888 3456667777665211 0 01134688999999765 689999999988554
Q ss_pred -HHHHHhhhh
Q psy7809 219 -PIQIIGLCL 227 (343)
Q Consensus 219 -r~~il~~~~ 227 (343)
|.+|++..+
T Consensus 165 er~eil~~~~ 174 (589)
T TIGR02031 165 LRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHH
Confidence 677777655
No 194
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1e-09 Score=103.26 Aligned_cols=47 Identities=32% Similarity=0.559 Sum_probs=40.7
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..|.||+||+..|+.+.... ..++++|++||||||||++|+.+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 47889999999999999766 356799999999999999999887544
No 195
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.97 E-value=1.4e-09 Score=103.84 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=78.0
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCc-cccccccch
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSS-LTSKHYGES 133 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~-l~~~~~~~~ 133 (343)
.|+|.+++++.+...+. ...++||+||||||||++|++++..++. +|..+.+.- .....+|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 57888888888876663 4468999999999999999999987753 344333221 111111111
Q ss_pred -HHHH--HHHHHHHHHc---CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-CCC----CCCCEEEEEecCCC
Q psy7809 134 -EKLV--RALFETARAR---APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-TGS----GDKGVLVLAATNHP 202 (343)
Q Consensus 134 -~~~i--~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~~----~~~~v~vI~ttn~~ 202 (343)
-... ..-|...... ...+||+|||..+ .....+.|+..|+.-. ... +-...+++++||..
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra---------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC---------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 0000 1112111100 2249999999655 5577788888884321 100 01123344444633
Q ss_pred CC---CCHHHhccccCcch
Q psy7809 203 WD---LDEALKRRFEKRIS 218 (343)
Q Consensus 203 ~~---l~~~l~~rf~~~i~ 218 (343)
.. ..+++..||..++.
T Consensus 158 PE~g~~leAL~DRFliri~ 176 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLW 176 (498)
T ss_pred cccCCchHHhHhhEEEEEE
Confidence 21 23588888855554
No 196
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.97 E-value=2.2e-08 Score=93.10 Aligned_cols=155 Identities=23% Similarity=0.313 Sum_probs=98.5
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC----------
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP---------- 122 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~---------- 122 (343)
..|.-++|++.++..|--....| .-.++||.|+.|+|||+++|+++..|.-......|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 45778999999999887544332 34689999999999999999999887422111111
Q ss_pred ---C-------------------ccccccccchHH-H-----HHHHHH-HHHHcC--------CcEEEEcccccccCCCC
Q psy7809 123 ---S-------------------SLTSKHYGESEK-L-----VRALFE-TARARA--------PAVIFIDEVDAFCSGSR 165 (343)
Q Consensus 123 ---~-------------------~l~~~~~~~~~~-~-----i~~~~~-~a~~~~--------p~il~iDeid~l~~~~~ 165 (343)
. .+.....+.++. . +..+.. --+..+ ..||++||+..|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL----- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL----- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc-----
Confidence 0 011111222222 1 111111 001111 259999999877
Q ss_pred chhhhHHHHHHHhhhcc---------cCCCCCCCCCEEEEEecCCC-CCCCHHHhccccCcch---------HHHHHhhh
Q psy7809 166 EHEATRRVRCELLSHMD---------GVGTGSGDKGVLVLAATNHP-WDLDEALKRRFEKRIS---------PIQIIGLC 226 (343)
Q Consensus 166 ~~~~~~~~~~~ll~~l~---------~~~~~~~~~~v~vI~ttn~~-~~l~~~l~~rf~~~i~---------r~~il~~~ 226 (343)
..+++..|+..+. +++-.. +.++++|+|+|.- ..|-+.|+.||...+. |.+|+++.
T Consensus 157 ----~d~lvd~LLd~aaeG~n~vereGisi~h-pa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 157 ----DDHLVDALLDVAAEGVNDVEREGISIRH-PARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred ----cHHHHHHHHHHHHhCCceeeeCceeecc-CccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence 4466777777654 232222 5589999999986 4688999999987775 77777766
Q ss_pred hcC
Q psy7809 227 LGE 229 (343)
Q Consensus 227 ~~~ 229 (343)
+..
T Consensus 232 ~~f 234 (423)
T COG1239 232 LAF 234 (423)
T ss_pred HHh
Confidence 553
No 197
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.96 E-value=1.4e-09 Score=103.51 Aligned_cols=141 Identities=24% Similarity=0.382 Sum_probs=91.2
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH 129 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~ 129 (343)
....+++|.....+++.+.+... .....+|||+|++||||-.+||+|-... +.||+.++|..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45778999988888888776532 1455689999999999999999996655 5699999997765321
Q ss_pred -----ccchH----H---HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCCCC-CC
Q psy7809 130 -----YGESE----K---LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTGSG-DK 191 (343)
Q Consensus 130 -----~~~~~----~---~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~~~-~~ 191 (343)
+|... . .-...|+.|. .+.||||||..| ...++..|+..++. +.+... .-
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~m---------pl~~Q~kLLRvLqe~~~~rvG~~~~i~v 275 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEM---------PLELQVKLLRVLQEREFERVGGNKPIKV 275 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccC---------CHHHHHHHHHHHHcCeeEecCCCcccce
Confidence 11110 0 0111333332 369999999777 44667777777762 322211 22
Q ss_pred CEEEEEecCCCCCCCHHHhc-cccCcc
Q psy7809 192 GVLVLAATNHPWDLDEALKR-RFEKRI 217 (343)
Q Consensus 192 ~v~vI~ttn~~~~l~~~l~~-rf~~~i 217 (343)
.|.||++||. +|...+.. +|..-+
T Consensus 276 dvRiIaaT~~--dL~~~v~~G~FReDL 300 (464)
T COG2204 276 DVRIIAATNR--DLEEEVAAGRFREDL 300 (464)
T ss_pred eeEEEeecCc--CHHHHHHcCCcHHHH
Confidence 5789999997 44444444 444333
No 198
>KOG0745|consensus
Probab=98.95 E-value=2.5e-09 Score=98.94 Aligned_cols=94 Identities=31% Similarity=0.506 Sum_probs=71.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccch-HHHHHHHHHHHH----HcCCcEEEEcccccccCC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGES-EKLVRALFETAR----ARAPAVIFIDEVDAFCSG 163 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~~-~~~i~~~~~~a~----~~~p~il~iDeid~l~~~ 163 (343)
.+|||.||+|+|||.||+.+|+-++.||...+|..+.. .|+|+- +..+..++..|. ..+..|+||||+|+|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999998874 566663 556666666552 234579999999999842
Q ss_pred CC-----chhhhHHHHHHHhhhccc
Q psy7809 164 SR-----EHEATRRVRCELLSHMDG 183 (343)
Q Consensus 164 ~~-----~~~~~~~~~~~ll~~l~~ 183 (343)
.. ......-++..|++.+++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 11 122234577788888875
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.93 E-value=1.9e-08 Score=99.78 Aligned_cols=131 Identities=24% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT 126 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~ 126 (343)
.+...+++++|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 344678899999888888777665321 345689999999999999999998775 4689999998764
Q ss_pred cccc-----cchHHH-------HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-
Q psy7809 127 SKHY-----GESEKL-------VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS- 188 (343)
Q Consensus 127 ~~~~-----~~~~~~-------i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~- 188 (343)
.... |..... -...+.. ...++|||||+|.|. ...+..|+..++.-. ...
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~---------~~~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEIS---------PAFQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCC---------HHHHHHHHHHHhcCcEEECCCCce
Confidence 3210 000000 0001111 124699999999883 345566666664311 100
Q ss_pred CCCCEEEEEecCCC
Q psy7809 189 GDKGVLVLAATNHP 202 (343)
Q Consensus 189 ~~~~v~vI~ttn~~ 202 (343)
....+.+|++|+..
T Consensus 328 ~~~~~riI~~s~~~ 341 (534)
T TIGR01817 328 LKVDVRLVAATNRD 341 (534)
T ss_pred EeecEEEEEeCCCC
Confidence 01246788887653
No 200
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=5e-09 Score=98.03 Aligned_cols=192 Identities=21% Similarity=0.277 Sum_probs=112.6
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcCCcc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLPSSL 125 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~~~l 125 (343)
.....+.+++|.....+.+.+.+... .....+||++|++||||+.+|+.+... .+.||+.+||..+
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 33456788999876666666655431 145568999999999999999999533 3668999999887
Q ss_pred ccccccc------------hHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCC-
Q psy7809 126 TSKHYGE------------SEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTG- 187 (343)
Q Consensus 126 ~~~~~~~------------~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~- 187 (343)
....... ....-..+|..|.. +.||+|||+.|. ...+..|+..|+. +.+.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP---------~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLP---------PEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCC---------HhHHHHHHHHHHcCceEecCCCC
Confidence 6542211 01111223443332 699999998884 3455567777764 2221
Q ss_pred CCCCCEEEEEecCCCCCCCHHHhc-------cccCcch----------HHHHHhhhhc----CCCCCCcccHHHHHHHcc
Q psy7809 188 SGDKGVLVLAATNHPWDLDEALKR-------RFEKRIS----------PIQIIGLCLG----EIRKDPNVDVATLSKQLI 246 (343)
Q Consensus 188 ~~~~~v~vI~ttn~~~~l~~~l~~-------rf~~~i~----------r~~il~~~~~----~~~~~~~~~~~~la~~t~ 246 (343)
.-...|.+|++|+. .++..++. ++...|. +..+++.++. +.......+.....+...
T Consensus 210 ~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 210 PRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred CcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 11346778888774 33333333 4444443 3333333333 222221222222222222
Q ss_pred CC----CHHHHHHHHHHHHHHHH
Q psy7809 247 GY----SGSDIRDLCQEIILIAA 265 (343)
Q Consensus 247 g~----s~~di~~l~~~A~~~a~ 265 (343)
.| +-++|++++++++..+.
T Consensus 288 ~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 288 AYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhc
Confidence 22 67999999999888774
No 201
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.91 E-value=1.6e-08 Score=100.90 Aligned_cols=53 Identities=28% Similarity=0.426 Sum_probs=44.3
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
...|+..|++++|++++++.|...+.. ..+++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 345667899999999999998876642 24799999999999999999998765
No 202
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.91 E-value=3e-08 Score=92.10 Aligned_cols=138 Identities=22% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc-
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH- 129 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~- 129 (343)
.+++++|.....+.+.+.+.... ....+|||+|++||||+++|+++-... +.+|+.++|..+....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 46788998877777776664321 345689999999999999999997554 4689999998764211
Q ss_pred ----ccchH-------HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCC
Q psy7809 130 ----YGESE-------KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKG 192 (343)
Q Consensus 130 ----~~~~~-------~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~ 192 (343)
+|... ......+.. ...+.|||||+|.|. ...+..|+..++.-. .. .....
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~---------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP---------MLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCC---------HHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 01000 000112222 234689999999883 345556666654311 10 00124
Q ss_pred EEEEEecCCC-------CCCCHHHhccc
Q psy7809 193 VLVLAATNHP-------WDLDEALKRRF 213 (343)
Q Consensus 193 v~vI~ttn~~-------~~l~~~l~~rf 213 (343)
+.||++|+.. ..+.+.+..||
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~~l 169 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLDRL 169 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHHhc
Confidence 7788887753 23446666666
No 203
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.90 E-value=1.4e-08 Score=94.29 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=69.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc-----cchH-------HHHHHHHHHHHHcCCcE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY-----GESE-------KLVRALFETARARAPAV 151 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~-----~~~~-------~~i~~~~~~a~~~~p~i 151 (343)
....+|||+|++||||+++|++|-... +.+|+.++|..+..... |... ..-..+|..+ ..+.
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGt 96 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGT 96 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCE
Confidence 345689999999999999999996554 46999999987542211 0000 0001112222 2479
Q ss_pred EEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCCEEEEEecCCC-------CCCCHHHhccc
Q psy7809 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKGVLVLAATNHP-------WDLDEALKRRF 213 (343)
Q Consensus 152 l~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~v~vI~ttn~~-------~~l~~~l~~rf 213 (343)
||||||+.| ...++..|+..++.-. .. .....+.+|++|+.. ..+.+.+..||
T Consensus 97 L~Ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl 162 (329)
T TIGR02974 97 LFLDELATA---------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRL 162 (329)
T ss_pred EEeCChHhC---------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHh
Confidence 999999988 3355566666664321 10 012357788888753 12345555565
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.88 E-value=4.7e-09 Score=97.02 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc---hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE---SEKLVRALFETARARAPAVIFIDEVDAFC 161 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~---~~~~i~~~~~~a~~~~p~il~iDeid~l~ 161 (343)
...+++|+||+|+|||+|+.++|+++ +..+++++..++....... ........+... ....+|+|||+....
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK 259 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC
Confidence 34789999999999999999999987 6778888877765432110 000011112222 234799999997663
No 205
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.88 E-value=1.9e-08 Score=94.88 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=113.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK 128 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~ 128 (343)
...+.+++|......++.+.+.... .....|||.|.+||||..+||+|=... ..+|+.+||..+...
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 4567789999888887777665432 455689999999999999999997655 579999999776532
Q ss_pred cccc-hHHHHHHHHHHHHHcC--------CcEEEEcccccccCCCCchhhhHHHHHHHhhhcc-----cCCCCCC-CCCE
Q psy7809 129 HYGE-SEKLVRALFETARARA--------PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD-----GVGTGSG-DKGV 193 (343)
Q Consensus 129 ~~~~-~~~~i~~~~~~a~~~~--------p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~-----~~~~~~~-~~~v 193 (343)
.... .-...+..|.-|.... .+-||||||..| .-.++..|+..++ .+.+... .-.|
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ikVDV 359 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRTIKVDV 359 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC---------CHHHHHHHHHHHhhcceeecCCCceeEEEE
Confidence 1100 0001222333332222 258999999766 4456667776664 3333221 1147
Q ss_pred EEEEecCCCCCCCHHHhc-cccCcch-----------------------HHHHHhhhhcCCCC-CCccc---HHHHHHHc
Q psy7809 194 LVLAATNHPWDLDEALKR-RFEKRIS-----------------------PIQIIGLCLGEIRK-DPNVD---VATLSKQL 245 (343)
Q Consensus 194 ~vI~ttn~~~~l~~~l~~-rf~~~i~-----------------------r~~il~~~~~~~~~-~~~~~---~~~la~~t 245 (343)
.||++||+ +|...+.. +|..-++ -...++.+-.+... .-.+. ++.|.+..
T Consensus 360 RiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 360 RVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred EEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 89999997 55555555 4433222 11112222222211 11122 33333332
Q ss_pred -cCCCHHHHHHHHHHHHHHH
Q psy7809 246 -IGYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 246 -~g~s~~di~~l~~~A~~~a 264 (343)
.| +-++|++++++|...|
T Consensus 438 wPG-NVRELen~veRavlla 456 (550)
T COG3604 438 WPG-NVRELENVVERAVLLA 456 (550)
T ss_pred CCC-cHHHHHHHHHHHHHHh
Confidence 22 6799999999999988
No 206
>PRK08116 hypothetical protein; Validated
Probab=98.87 E-value=3.6e-09 Score=95.40 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=59.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc----hHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE----SEKLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~----~~~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
.+.+++|+|++|||||+||.++|+++ +.++++++..++....... .......++... ....+|+|||++..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCC
Confidence 34579999999999999999999986 6788888876655432111 011112233222 23469999999643
Q ss_pred cCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 161 CSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
-. .+ .....|...++..... +..+|.|||.+
T Consensus 191 ~~----t~---~~~~~l~~iin~r~~~----~~~~IiTsN~~ 221 (268)
T PRK08116 191 RD----TE---WAREKVYNIIDSRYRK----GLPTIVTTNLS 221 (268)
T ss_pred CC----CH---HHHHHHHHHHHHHHHC----CCCEEEECCCC
Confidence 11 11 2233444444433221 23477777754
No 207
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.84 E-value=4.3e-08 Score=99.82 Aligned_cols=151 Identities=20% Similarity=0.164 Sum_probs=84.9
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHh---------ccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-------ceEE
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFK---------GILRPWRGILLFGPPGTGKTLLAKAVASQHGS-------TFFN 119 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~---------~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-------~~~~ 119 (343)
..|.|.+.+|+.|.-.+..--....-.. ..++...+|||.|+||||||.+|+.+++.... ++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4689999999988655543211000000 11344568999999999999999999875432 2333
Q ss_pred EcCCccccccccchHH-HH-HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-------C-CCC
Q psy7809 120 VLPSSLTSKHYGESEK-LV-RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-------T-GSG 189 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~-~i-~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-------~-~~~ 189 (343)
+.+............. .+ ...+.. ...++++|||+|.+. ......|++.|+.-. . ..-
T Consensus 530 vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms---------~~~Q~aLlEaMEqqtIsI~KaGi~~tL 597 (915)
T PTZ00111 530 VGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCH---------NESRLSLYEVMEQQTVTIAKAGIVATL 597 (915)
T ss_pred ccccchhhhcccccCcccccCCcEEE---cCCCeEEecchhhCC---------HHHHHHHHHHHhCCEEEEecCCcceec
Confidence 3222211100000000 00 000011 113699999999883 234455555554321 0 011
Q ss_pred CCCEEEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809 190 DKGVLVLAATNHPW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 190 ~~~v~vI~ttn~~~-------------~l~~~l~~rf~~~i~ 218 (343)
+.++.||+++|..+ .|++++++||+..+.
T Consensus 598 ~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~ 639 (915)
T PTZ00111 598 KAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYL 639 (915)
T ss_pred CCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEE
Confidence 34789999999752 378999999987654
No 208
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.83 E-value=8.6e-08 Score=97.92 Aligned_cols=128 Identities=20% Similarity=0.312 Sum_probs=81.4
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH 129 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~ 129 (343)
..|++++|.....+.+.+.+.... ....+|||+|++|||||++|++|.... +.+|+.++|..+....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 567889998888877766664321 344689999999999999999997754 5699999998764221
Q ss_pred -----ccch-------HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCC
Q psy7809 130 -----YGES-------EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDK 191 (343)
Q Consensus 130 -----~~~~-------~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~ 191 (343)
+|.. .......|..+ ..++||||||+.+ ...+...|+..++.-. ... ...
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 510 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM---------PLELQPKLLRVLQEQEFERLGSNKIIQT 510 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC---------CHHHHHHHHHHHHhCCEEeCCCCCcccc
Confidence 1110 00011123222 3479999999988 3345556666654311 110 123
Q ss_pred CEEEEEecCCC
Q psy7809 192 GVLVLAATNHP 202 (343)
Q Consensus 192 ~v~vI~ttn~~ 202 (343)
++.+|++|+..
T Consensus 511 ~~RiI~~t~~~ 521 (686)
T PRK15429 511 DVRLIAATNRD 521 (686)
T ss_pred eEEEEEeCCCC
Confidence 57788888764
No 209
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.83 E-value=6.6e-09 Score=101.86 Aligned_cols=128 Identities=25% Similarity=0.328 Sum_probs=82.5
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH-----------hCCceEEEc
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ-----------HGSTFFNVL 121 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~-----------l~~~~~~v~ 121 (343)
..|++++|.....+.+.+.+.... ....+|||+|++||||+++|++|-.. .+.+|+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468899999888887777664321 34568999999999999999999766 356999999
Q ss_pred CCccccccc-----cchHH--------HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC---
Q psy7809 122 PSSLTSKHY-----GESEK--------LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG--- 185 (343)
Q Consensus 122 ~~~l~~~~~-----~~~~~--------~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~--- 185 (343)
|..+..... |.... .-..+|..+ ..+.||||||+.| +...+..|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L---------p~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEM---------PLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhC---------CHHHHHHHHhhhhcCeEEe
Confidence 987643211 10000 001233333 2368999999988 3456666777665321
Q ss_pred --CCC-CCCCEEEEEecCCC
Q psy7809 186 --TGS-GDKGVLVLAATNHP 202 (343)
Q Consensus 186 --~~~-~~~~v~vI~ttn~~ 202 (343)
... -...+.+|++|+..
T Consensus 354 ~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 354 VGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred cCCCceeccceEEEEecCCC
Confidence 111 12246788888753
No 210
>PRK06921 hypothetical protein; Provisional
Probab=98.82 E-value=1.3e-08 Score=91.75 Aligned_cols=69 Identities=26% Similarity=0.325 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA 159 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~ 159 (343)
...+++|+||+|+|||+|+.++|+++ +..++++...++........ ......+.. .....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 35689999999999999999999876 45667776555433211110 111112222 23457999999954
No 211
>PRK08181 transposase; Validated
Probab=98.82 E-value=7.4e-09 Score=93.06 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch-HHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES-EKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
...+++|+||+|||||+|+.+++.++ |..+++++..++........ .......+... ..+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 45689999999999999999998755 66778887766665321110 01122233322 3457999999987743
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.82 E-value=3.1e-08 Score=100.39 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=80.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK 128 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~ 128 (343)
...|++++|.....+.+.+.+.... ....+|||+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999998877777666554321 344579999999999999999998765 468999999876421
Q ss_pred cccchHHHHHHHHHH------------HHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CC
Q psy7809 129 HYGESEKLVRALFET------------ARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GD 190 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~ 190 (343)
. ....+|.. ......+.||||||+.| ...++..|+..++.-. ... ..
T Consensus 391 ~------~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 A------LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL---------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred H------HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 1 11112211 00112468999999988 3355566666664321 100 01
Q ss_pred CCEEEEEecCCC
Q psy7809 191 KGVLVLAATNHP 202 (343)
Q Consensus 191 ~~v~vI~ttn~~ 202 (343)
-.+.+|+||+..
T Consensus 456 ~~~riI~~t~~~ 467 (638)
T PRK11388 456 VDVRVIATTTAD 467 (638)
T ss_pred eeEEEEEeccCC
Confidence 146788888763
No 213
>KOG2227|consensus
Probab=98.81 E-value=1.4e-07 Score=88.48 Aligned_cols=217 Identities=19% Similarity=0.233 Sum_probs=130.3
Q ss_pred CCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHH
Q psy7809 31 NRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia 110 (343)
.....++.-+.....+....++. .++|.+.-+..+++++..++.. ..+.++++.|.||+|||.+...+.
T Consensus 128 ~~p~~ke~~~~~~~~l~~t~~p~---~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl 196 (529)
T KOG2227|consen 128 MNPSAKEISEQRSESLLNTAPPG---TLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVL 196 (529)
T ss_pred CCcccHHHHHHHHHHHHhcCCCC---CccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHH
Confidence 33334445555555555555554 5689999999999988765432 556789999999999999998776
Q ss_pred HHhC-----CceEEEcCCcccccc---------------ccchHHHHHHHHHHH-HHcC-CcEEEEcccccccCCCCchh
Q psy7809 111 SQHG-----STFFNVLPSSLTSKH---------------YGESEKLVRALFETA-RARA-PAVIFIDEVDAFCSGSREHE 168 (343)
Q Consensus 111 ~~l~-----~~~~~v~~~~l~~~~---------------~~~~~~~i~~~~~~a-~~~~-p~il~iDeid~l~~~~~~~~ 168 (343)
..+. ...++++|..+.... ...........|..- .... +-|+++||+|.|+...+
T Consensus 197 ~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--- 273 (529)
T KOG2227|consen 197 DSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--- 273 (529)
T ss_pred HhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---
Confidence 5442 245788887654210 011111122222222 2222 55999999999974322
Q ss_pred hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc-ccc-----Ccch-----HHHHHhhhhcCC---CCCC
Q psy7809 169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR-RFE-----KRIS-----PIQIIGLCLGEI---RKDP 234 (343)
Q Consensus 169 ~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~-rf~-----~~i~-----r~~il~~~~~~~---~~~~ 234 (343)
.++.++..+-.. ...++++||.+|..+.-|..|-+ ..+ ..+. +.+|.+++-.+. ....
T Consensus 274 ---~vLy~lFewp~l-----p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~ 345 (529)
T KOG2227|consen 274 ---TVLYTLFEWPKL-----PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI 345 (529)
T ss_pred ---ceeeeehhcccC-----CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc
Confidence 233333333221 24589999999988766654444 111 1111 555555555443 2222
Q ss_pred --cccHHHHHHHccCCCHHHHH---HHHHHHHHHHHHHHHH
Q psy7809 235 --NVDVATLSKQLIGYSGSDIR---DLCQEIILIAAREVIQ 270 (343)
Q Consensus 235 --~~~~~~la~~t~g~s~~di~---~l~~~A~~~a~~r~~~ 270 (343)
...+...|+...|- .||++ .+|++|+.++..+...
T Consensus 346 ~~~~Aie~~ArKvaa~-SGDlRkaLdv~R~aiEI~E~e~r~ 385 (529)
T KOG2227|consen 346 FLNAAIELCARKVAAP-SGDLRKALDVCRRAIEIAEIEKRK 385 (529)
T ss_pred cchHHHHHHHHHhccC-chhHHHHHHHHHHHHHHHHHHHhh
Confidence 23466788888885 46776 5788899888876544
No 214
>KOG2035|consensus
Probab=98.81 E-value=1.1e-07 Score=83.40 Aligned_cols=171 Identities=16% Similarity=0.262 Sum_probs=111.9
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---c------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---T------ 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~------ 116 (343)
++.++.+.+++.+.+.++....+..+... ....++++|||+|+||.|.+-++.+++.. +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 45677888899999999998888876641 23468999999999999999999988732 1
Q ss_pred --------------------eEEEcCCccccccccch-HHHHHHHHHHHHHcCC---------cEEEEcccccccCCCCc
Q psy7809 117 --------------------FFNVLPSSLTSKHYGES-EKLVRALFETARARAP---------AVIFIDEVDAFCSGSRE 166 (343)
Q Consensus 117 --------------------~~~v~~~~l~~~~~~~~-~~~i~~~~~~a~~~~p---------~il~iDeid~l~~~~~~ 166 (343)
.+++++++ .|.. ...+.++++.....+| .+++|-|+|.|
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L------ 139 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL------ 139 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh------
Confidence 11112222 1211 2345555555544332 49999999988
Q ss_pred hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhcc-ccCcch------HHHHHhhhhcCCCCC-CcccH
Q psy7809 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR-FEKRIS------PIQIIGLCLGEIRKD-PNVDV 238 (343)
Q Consensus 167 ~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~r-f~~~i~------r~~il~~~~~~~~~~-~~~~~ 238 (343)
....+.+|...|+.+.. ++.+|..+|..+.+-+++++| |-.++. -..++...+++..+. +..-+
T Consensus 140 ---T~dAQ~aLRRTMEkYs~-----~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l 211 (351)
T KOG2035|consen 140 ---TRDAQHALRRTMEKYSS-----NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELL 211 (351)
T ss_pred ---hHHHHHHHHHHHHHHhc-----CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHH
Confidence 45667788888887754 567888899999999999995 334443 223344444443222 23334
Q ss_pred HHHHHHccC
Q psy7809 239 ATLSKQLIG 247 (343)
Q Consensus 239 ~~la~~t~g 247 (343)
..+|+.+.|
T Consensus 212 ~rIa~kS~~ 220 (351)
T KOG2035|consen 212 KRIAEKSNR 220 (351)
T ss_pred HHHHHHhcc
Confidence 566666655
No 215
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.80 E-value=2e-09 Score=73.93 Aligned_cols=45 Identities=27% Similarity=0.502 Sum_probs=36.9
Q ss_pred CCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809 290 AKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG 341 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~ 341 (343)
..+....+..++ |+.+||..|++.++|||+.+++++|++|.++||
T Consensus 18 ~di~~~~l~~p~-------it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 18 MDIPAEKLKEPP-------ITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp TGS-GGGB-HHH-------BCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred hhcCcccccCCC-------CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 444455555555 999999999999999999999999999999999
No 216
>PRK06526 transposase; Provisional
Probab=98.80 E-value=4.4e-09 Score=93.95 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=46.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc-hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE-SEKLVRALFETARARAPAVIFIDEVDAFC 161 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~-~~~~i~~~~~~a~~~~p~il~iDeid~l~ 161 (343)
....+++|+||||||||+|+.+++.++ |..+.++++.++....... ....+...+.. ...+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 455789999999999999999998775 5556565555544322100 00011222222 2346799999998774
No 217
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.80 E-value=2.2e-07 Score=91.67 Aligned_cols=127 Identities=21% Similarity=0.292 Sum_probs=81.4
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc-
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH- 129 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~- 129 (343)
.+.+++|.....+.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57789998888877777665421 455689999999999999999998765 4689999998764321
Q ss_pred ----ccchHHH-------HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCC
Q psy7809 130 ----YGESEKL-------VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKG 192 (343)
Q Consensus 130 ----~~~~~~~-------i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~ 192 (343)
+|..... ....|..+ ..+.|||||||.|. ...+..|+..++.-. ... ....
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 322 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP---------LALQAKLLRVLQYGEIQRVGSDRSLRVD 322 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC---------HHHHHHHHHHHhcCCEeeCCCCcceecc
Confidence 1100000 00123222 24689999999883 345556666654311 110 1225
Q ss_pred EEEEEecCCC
Q psy7809 193 VLVLAATNHP 202 (343)
Q Consensus 193 v~vI~ttn~~ 202 (343)
+.+|++|+..
T Consensus 323 ~RiI~~t~~~ 332 (509)
T PRK05022 323 VRVIAATNRD 332 (509)
T ss_pred eEEEEecCCC
Confidence 6788888764
No 218
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.79 E-value=7e-08 Score=93.75 Aligned_cols=47 Identities=34% Similarity=0.499 Sum_probs=37.5
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..|.++.|+..+++.+.-.+ ....+++|.||+|+|||++++.++..+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 37888999988887765222 355789999999999999999998765
No 219
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.77 E-value=6.2e-08 Score=95.60 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=80.9
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL 125 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l 125 (343)
.....+|++++|.....+.+.+.+.... .....|||+|++||||+++|+++-... ..+|+.++|..+
T Consensus 197 ~~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 197 VNDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred ccccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 3456789999998876666665553211 234579999999999999999985543 468999999876
Q ss_pred cccc-----ccchH-------HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC
Q psy7809 126 TSKH-----YGESE-------KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS 188 (343)
Q Consensus 126 ~~~~-----~~~~~-------~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~ 188 (343)
.... +|... ..-..+|..+ ..+.|||||||.|. ..++..|+..++.-. ...
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS---------PRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC---------HHHHHHHHHHHhcCCcccCCCCc
Confidence 4321 11000 0001123322 23689999999883 345556666664311 100
Q ss_pred -CCCCEEEEEecCCC
Q psy7809 189 -GDKGVLVLAATNHP 202 (343)
Q Consensus 189 -~~~~v~vI~ttn~~ 202 (343)
....+.||++|+.+
T Consensus 335 ~~~~~vRiI~st~~~ 349 (520)
T PRK10820 335 EVHVDVRVICATQKN 349 (520)
T ss_pred ceeeeeEEEEecCCC
Confidence 01246788877654
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.75 E-value=2.5e-08 Score=89.20 Aligned_cols=71 Identities=27% Similarity=0.432 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHH--HHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEK--LVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~--~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
...+++|+||||+|||+||-|+++++ |.++..+..++++......... .-..+.... ....||+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 56799999999999999999999887 6788888888877542221110 011111111 23479999999765
No 221
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.74 E-value=1.4e-07 Score=92.20 Aligned_cols=70 Identities=24% Similarity=0.171 Sum_probs=53.4
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+++++.+.+.+||+-...-.+.++.++...... ..+.+-+||+||+|||||++++.+|++++..+.+-
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 46788999999999998776666777666532111 12344688999999999999999999999877653
No 222
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.1e-07 Score=85.75 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc----------------eEEEcCCccccccccchHHHHHHHHHHHHH----
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST----------------FFNVLPSSLTSKHYGESEKLVRALFETARA---- 146 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~---- 146 (343)
+-+..+||+||+|+||+.+|.++|..+-+. ++.+.+..- +. .-..+.++.+...+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CC--cCcHHHHHHHHHHHhhCccC
Confidence 456789999999999999999999887442 222211100 00 0112334444444332
Q ss_pred cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCc
Q psy7809 147 RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKR 216 (343)
Q Consensus 147 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~ 216 (343)
....|++||++|.+ .....+.|++.++.. +.++++|..|+.++.+.|.++||+...
T Consensus 94 ~~~kv~ii~~ad~m---------t~~AaNaLLK~LEEP-----p~~~~fiL~~~~~~~ll~TI~SRcq~~ 149 (290)
T PRK05917 94 SPYKIYIIHEADRM---------TLDAISAFLKVLEDP-----PQHGVIILTSAKPQRLPPTIRSRSLSI 149 (290)
T ss_pred CCceEEEEechhhc---------CHHHHHHHHHHhhcC-----CCCeEEEEEeCChhhCcHHHHhcceEE
Confidence 23359999999998 446788999999864 558899999999999999999976553
No 223
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=6.4e-08 Score=89.60 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC-------------------------ceEEEcCCcc---cccc-ccchHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS-------------------------TFFNVLPSSL---TSKH-YGESEKLV 137 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~-------------------------~~~~v~~~~l---~~~~-~~~~~~~i 137 (343)
+.+..+||+||+|+|||++|+.+|+.+.+ .++++.+..- .++. ..-..+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45678999999999999999999988743 2333433110 0000 00123446
Q ss_pred HHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccc
Q psy7809 138 RALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRF 213 (343)
Q Consensus 138 ~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf 213 (343)
+.+.+.+.. ....|++||+++.+ .....+.+++.++... .++.+|.+|.+++.+.+.+.+|+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L---------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~SRc 164 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM---------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIKSRC 164 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC---------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHHHHh
Confidence 666555543 23459999999988 3456777888887652 24667778999999999999976
Q ss_pred cCcc
Q psy7809 214 EKRI 217 (343)
Q Consensus 214 ~~~i 217 (343)
...-
T Consensus 165 ~~~~ 168 (325)
T PRK08699 165 RKMV 168 (325)
T ss_pred hhhc
Confidence 5433
No 224
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.73 E-value=1.9e-08 Score=98.66 Aligned_cols=128 Identities=23% Similarity=0.319 Sum_probs=81.9
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH 129 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~ 129 (343)
..|++++|.....+.+.+.+.... ....+|||+|++||||+++|++|-... +.+|+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 568899999888887777664321 345689999999999999999997654 5699999998764321
Q ss_pred -----ccchH--------HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CC
Q psy7809 130 -----YGESE--------KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GD 190 (343)
Q Consensus 130 -----~~~~~--------~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~ 190 (343)
+|... ..-..+|..+. .+.||||||+.| +..++..|+..++.-. ... ..
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L---------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~ 346 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM---------PLPLQTRLLRVLEEREVVRVGGTEPVP 346 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC---------CHHHHHHHHHHHhcCcEEecCCCceee
Confidence 11000 00112333332 368999999988 3455666666665321 111 01
Q ss_pred CCEEEEEecCCC
Q psy7809 191 KGVLVLAATNHP 202 (343)
Q Consensus 191 ~~v~vI~ttn~~ 202 (343)
..+.+|++|+..
T Consensus 347 ~dvRiIaat~~~ 358 (526)
T TIGR02329 347 VDVRVVAATHCA 358 (526)
T ss_pred ecceEEeccCCC
Confidence 245678887754
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.72 E-value=6.6e-09 Score=87.95 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=46.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch-HHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES-EKLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
....+++|+||+|+|||+||.++++++ +..+.+++..++........ .......+.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 456799999999999999999998765 77888888777764321110 011223333332 3479999999644
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=98.72 E-value=1.8e-08 Score=90.44 Aligned_cols=74 Identities=24% Similarity=0.332 Sum_probs=48.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc-hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE-SEKLVRALFETARARAPAVIFIDEVDAFC 161 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~-~~~~i~~~~~~a~~~~p~il~iDeid~l~ 161 (343)
....+++|+||+|||||+|+.+++..+ |..+.++++.++....... ....+...+... ...+.+++|||++.+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 455689999999999999999997664 6677777766655322110 001133334332 2456799999998763
No 227
>KOG1051|consensus
Probab=98.71 E-value=1.1e-07 Score=96.61 Aligned_cols=130 Identities=24% Similarity=0.299 Sum_probs=92.4
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccC--CCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCccc----
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGIL--RPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLT---- 126 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~---- 126 (343)
+.|+||+++...+.+.+..... ++. .+...++|.||.|+|||-||+++|..+- -.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 4589999999999998875421 111 3667899999999999999999998873 468889888532
Q ss_pred --c---ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEEE
Q psy7809 127 --S---KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVLV 195 (343)
Q Consensus 127 --~---~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~v 195 (343)
+ .|+|... ...+....+....+||+|||||.- +..+++.|++.++.-.-.. .-++++|
T Consensus 636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA---------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA---------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc---------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 2 2344332 345666666667789999999755 5578888888887422111 1347899
Q ss_pred EEecCCC
Q psy7809 196 LAATNHP 202 (343)
Q Consensus 196 I~ttn~~ 202 (343)
|.|+|.-
T Consensus 705 IMTsn~~ 711 (898)
T KOG1051|consen 705 IMTSNVG 711 (898)
T ss_pred EEecccc
Confidence 9998863
No 228
>PF13173 AAA_14: AAA domain
Probab=98.69 E-value=6.9e-08 Score=77.23 Aligned_cols=69 Identities=25% Similarity=0.358 Sum_probs=47.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
..++|+||+|||||++++.++..+. .+++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998887 78888887765542211111 223332222225689999999877
No 229
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=9.8e-08 Score=76.30 Aligned_cols=86 Identities=28% Similarity=0.323 Sum_probs=53.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh--------CCceEEEcCCccccc--------------cc--cchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH--------GSTFFNVLPSSLTSK--------------HY--GESEKLVRALFETA 144 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l--------~~~~~~v~~~~l~~~--------------~~--~~~~~~i~~~~~~a 144 (343)
...++++||+|+|||++++.++..+ ..+++.+++...... .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999887 667777766443310 01 12233444455555
Q ss_pred HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 145 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
......+|+|||+|.+. ....++.|...++
T Consensus 84 ~~~~~~~lviDe~~~l~--------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF--------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH--------THHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC--------CHHHHHHHHHHHh
Confidence 55554599999999874 2445555555544
No 230
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.68 E-value=8.7e-08 Score=84.15 Aligned_cols=177 Identities=19% Similarity=0.238 Sum_probs=88.1
Q ss_pred ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEcC-Ccccc------
Q psy7809 58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVLP-SSLTS------ 127 (343)
Q Consensus 58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~~-~~l~~------ 127 (343)
++|.+...+.|.+.+.. .+...++|+||+|+|||+|++.+...+.. ..+++.. .....
T Consensus 1 F~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 35777777777766542 23568999999999999999999998732 1112211 00000
Q ss_pred ----------------------------ccccchHHHHHHHHHHHHHcC-CcEEEEccccccc-CCCCchhhhHHHHHHH
Q psy7809 128 ----------------------------KHYGESEKLVRALFETARARA-PAVIFIDEVDAFC-SGSREHEATRRVRCEL 177 (343)
Q Consensus 128 ----------------------------~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~-~~~~~~~~~~~~~~~l 177 (343)
.........+..++....... ..||+|||++.+. ... ........|
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----~~~~~~~~l 144 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----EDKDFLKSL 144 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----chHHHHHHH
Confidence 000112334556666655443 3799999999997 211 123444455
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCC------CHHHhccccCcch--------HHHHHhhhhcCCC-C-CCcccHHHH
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDL------DEALKRRFEKRIS--------PIQIIGLCLGEIR-K-DPNVDVATL 241 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l------~~~l~~rf~~~i~--------r~~il~~~~~~~~-~-~~~~~~~~l 241 (343)
...++.... ..++.+|.++...... ...+..|+.. +. -.++++..+.... + .++.+++.+
T Consensus 145 ~~~~~~~~~---~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i 220 (234)
T PF01637_consen 145 RSLLDSLLS---QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEI 220 (234)
T ss_dssp HHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHH
T ss_pred HHHHhhccc---cCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 555554222 1244444444332111 1122223333 22 3344444443331 1 367788899
Q ss_pred HHHccCCCHHHHHH
Q psy7809 242 SKQLIGYSGSDIRD 255 (343)
Q Consensus 242 a~~t~g~s~~di~~ 255 (343)
...+.|. |+-|..
T Consensus 221 ~~~~gG~-P~~l~~ 233 (234)
T PF01637_consen 221 YSLTGGN-PRYLQE 233 (234)
T ss_dssp HHHHTT--HHHHHH
T ss_pred HHHhCCC-HHHHhc
Confidence 9999884 666643
No 231
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.67 E-value=5.5e-08 Score=78.89 Aligned_cols=88 Identities=26% Similarity=0.456 Sum_probs=55.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG 163 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~ 163 (343)
.....|+|+|++||||+++|+++....+. +|+.++|..+. .+++..+ ....|||+|+|.|.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~-- 82 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS-- 82 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS---
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC--
Confidence 34567999999999999999999887653 45555555432 2344443 55799999999993
Q ss_pred CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 164 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
...+..|+..+.... ..++.+|+++..
T Consensus 83 -------~~~Q~~L~~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 83 -------PEAQRRLLDLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp -------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred -------HHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence 344455555554422 124455655553
No 232
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.66 E-value=6.4e-08 Score=88.83 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchH-HHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESE-KLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~-~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
...|++|+||+|+|||+|+.++|+++ |..+..+..+++......... ..+...+... ....||+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 45799999999999999999999988 677777777665543211100 0122333322 24579999999654
No 233
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=6.1e-07 Score=79.45 Aligned_cols=116 Identities=9% Similarity=0.033 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCce--------------EEEcCCccccccc---cchHHHHHHHHHHHH----
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTF--------------FNVLPSSLTSKHY---GESEKLVRALFETAR---- 145 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~--------------~~v~~~~l~~~~~---~~~~~~i~~~~~~a~---- 145 (343)
.++..+||+||.|+||..+|.++|..+-+.- ..-..+++.--+. .-....++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 5678899999999999999999998763210 0001111111000 011223333333321
Q ss_pred H-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCc
Q psy7809 146 A-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKR 216 (343)
Q Consensus 146 ~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~ 216 (343)
. ....|++|+++|.+ .....+.|++.++.- +.++++|.+|+.++.+.+.++||+...
T Consensus 85 e~~~~KV~II~~ae~m---------~~~AaNaLLK~LEEP-----p~~t~fiLit~~~~~lLpTI~SRCq~~ 142 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL---------NKQSANSLLKLIEEP-----PKNTYGIFTTRNENNILNTILSRCVQY 142 (261)
T ss_pred hcCCCEEEEeccHhhh---------CHHHHHHHHHhhcCC-----CCCeEEEEEECChHhCchHhhhheeee
Confidence 2 23579999999988 446788999999853 568899999999999999999986553
No 234
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.2e-06 Score=79.30 Aligned_cols=167 Identities=19% Similarity=0.109 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE----------------EEcCCc
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF----------------NVLPSS 124 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~----------------~v~~~~ 124 (343)
++.+++.+...+... +.+..+||+|| +||+++|+.+|..+-+.-. .-+.++
T Consensus 7 q~~~~~~L~~~~~~~-----------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQD-----------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 455666666655432 45678999996 6899999999987643210 001112
Q ss_pred cccccc-c--chHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809 125 LTSKHY-G--ESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLA 197 (343)
Q Consensus 125 l~~~~~-~--~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ 197 (343)
+.--.. + -....++.+...+.. ....|++||++|.+ .....|.|++.++.- +.++++|.
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m---------~~~AaNaLLKtLEEP-----p~~t~~iL 139 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM---------HVNAANSLLKVIEEP-----QSEIYIFL 139 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc---------CHHHHHHHHHHhcCC-----CCCeEEEE
Confidence 111000 1 112345555444432 23469999999998 346788999999854 45789999
Q ss_pred ecCCCCCCCHHHhccccCcch---HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809 198 ATNHPWDLDEALKRRFEKRIS---PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQ 258 (343)
Q Consensus 198 ttn~~~~l~~~l~~rf~~~i~---r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 258 (343)
+|++++.+-|.++||+...-. ...+.... ...... ......++ ...| +++....+..
T Consensus 140 ~t~~~~~lLpTI~SRcq~i~f~~~~~~~~~~L-~~~g~~-~~~a~~la-~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 140 LTNDENKVLPTIKSRTQIFHFPKNEAYLIQLL-EQKGLL-KTQAELLA-KLAQ-STSEAEKLAQ 199 (290)
T ss_pred EECChhhCchHHHHcceeeeCCCcHHHHHHHH-HHcCCC-hHHHHHHH-HHCC-CHHHHHHHhC
Confidence 999999999999997654333 33333333 222221 12223344 3445 5666666553
No 235
>KOG0478|consensus
Probab=98.63 E-value=2.6e-07 Score=90.02 Aligned_cols=151 Identities=25% Similarity=0.218 Sum_probs=81.1
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC-Cccccc--cccch
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP-SSLTSK--HYGES 133 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~-~~l~~~--~~~~~ 133 (343)
.|.|++++|+.|.-.+..-........+..+..-+|||+|.||||||.+.+.+.+.+..-.+.--- +.-.+. ++-.-
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 678999999988755533211111111123445689999999999999999999876543332100 000000 00000
Q ss_pred HHHHHHHHHH--H-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc---------CCCCCCCCCEEEEEecCC
Q psy7809 134 EKLVRALFET--A-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG---------VGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 134 ~~~i~~~~~~--a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~v~vI~ttn~ 201 (343)
.. .+.+.-. | --...+|-+|||||+|- ...+. .|.+.|+. +-..- +.+.-||+++|.
T Consensus 510 ~d-tkqlVLesGALVLSD~GiCCIDEFDKM~------dStrS---vLhEvMEQQTvSIAKAGII~sL-NAR~SVLAaANP 578 (804)
T KOG0478|consen 510 PD-TRQLVLESGALVLSDNGICCIDEFDKMS------DSTRS---VLHEVMEQQTLSIAKAGIIASL-NARCSVLAAANP 578 (804)
T ss_pred Cc-cceeeeecCcEEEcCCceEEchhhhhhh------HHHHH---HHHHHHHHhhhhHhhcceeeec-cccceeeeeecc
Confidence 00 0000000 0 00123689999999992 22223 33333332 11111 235678999985
Q ss_pred CC-------------CCCHHHhccccCcch
Q psy7809 202 PW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 202 ~~-------------~l~~~l~~rf~~~i~ 218 (343)
.. .|++.|+|||+..+-
T Consensus 579 ~~skynp~k~i~eNI~LpptLLSRFDLIyl 608 (804)
T KOG0478|consen 579 IRSKYNPNKSIIENINLPPTLLSRFDLIFL 608 (804)
T ss_pred ccccCCCCCchhhccCCChhhhhhhcEEEE
Confidence 42 378999999987664
No 236
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.62 E-value=1e-07 Score=89.27 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=82.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC-ceEEEcCCccccccccch------HHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS-TFFNVLPSSLTSKHYGES------EKLVRALFETARARAPAVIFIDEVDA 159 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~v~~~~l~~~~~~~~------~~~i~~~~~~a~~~~p~il~iDeid~ 159 (343)
.+++|++||||+|+|||+|.-.+...+.. .-..+...+++....... ...+..+-+.... ...||+|||++.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~V 138 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQV 138 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeeec
Confidence 57899999999999999999999887753 212222212221110000 0112222222222 224999999964
Q ss_pred ccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC-CCCCH-HHhc-cccCcchHHHHHhhhhcCCCCCCcc
Q psy7809 160 FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP-WDLDE-ALKR-RFEKRISPIQIIGLCLGEIRKDPNV 236 (343)
Q Consensus 160 l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~-~~l~~-~l~~-rf~~~i~r~~il~~~~~~~~~~~~~ 236 (343)
- ......++..|+..+- ..++++|+|+|.+ ++|-+ .+.+ +|.- -..+|+..+.-+.+.+..
T Consensus 139 ~------DiaDAmil~rLf~~l~-------~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp---~I~~l~~~~~vv~ld~~~ 202 (362)
T PF03969_consen 139 T------DIADAMILKRLFEALF-------KRGVVLVATSNRPPEDLYKNGLQRERFLP---FIDLLKRRCDVVELDGGV 202 (362)
T ss_pred c------chhHHHHHHHHHHHHH-------HCCCEEEecCCCChHHHcCCcccHHHHHH---HHHHHHhceEEEEecCCC
Confidence 4 3345567777777664 2378999999974 43322 2222 3333 445777777777777888
Q ss_pred cHHHHHH
Q psy7809 237 DVATLSK 243 (343)
Q Consensus 237 ~~~~la~ 243 (343)
|+.....
T Consensus 203 DyR~~~~ 209 (362)
T PF03969_consen 203 DYRRRGA 209 (362)
T ss_pred chhhhcc
Confidence 8876543
No 237
>KOG1970|consensus
Probab=98.58 E-value=1.8e-06 Score=82.53 Aligned_cols=71 Identities=21% Similarity=0.172 Sum_probs=45.6
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+++++.+.+.++|.-...-+..++.++... ..+. ...+.+-+||+||+||||||.++.+|+++|..+++-.
T Consensus 72 W~eKy~P~t~eeLAVHkkKI~eVk~WL~~~----~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 72 WVEKYKPRTLEELAVHKKKISEVKQWLKQV----AEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hHHhcCcccHHHHhhhHHhHHHHHHHHHHH----HHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 566777788888754333333333333200 0000 0134456889999999999999999999998877643
No 238
>KOG0482|consensus
Probab=98.56 E-value=2.1e-07 Score=87.83 Aligned_cols=177 Identities=21% Similarity=0.251 Sum_probs=95.9
Q ss_pred CCCCChhHHHHhhccccccCCCCCC-CcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHH
Q psy7809 31 NRRANPELTALVEKDIVQTDTGVGW-DDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ 108 (343)
....+++..+++..+-+-..-..++ .+|.|.+++|+.|.-.+..--... ...+. ++...+|+|.|.||+.||-|.+.
T Consensus 316 ~~~~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~-~~dGMKIRGdINicLmGDPGVAKSQLLky 394 (721)
T KOG0482|consen 316 TGELEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKS-PGDGMKIRGDINICLMGDPGVAKSQLLKY 394 (721)
T ss_pred cccccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCC-CCCCceeecceeEEecCCCchhHHHHHHH
Confidence 3444555555555443222222223 479999999999987776432211 11111 45556899999999999999999
Q ss_pred HHHHhCCceEEEcCCccccccccchHHHHHHHHH-------HHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhh
Q psy7809 109 VASQHGSTFFNVLPSSLTSKHYGESEKLVRALFE-------TARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSH 180 (343)
Q Consensus 109 ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~-------~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~ 180 (343)
+.+-.-..++..-.. +..+|-+....+.-.. -|.- ...+|.+|||+|++.... +....+.+++
T Consensus 395 i~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D------RtAIHEVMEQ 465 (721)
T KOG0482|consen 395 ISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD------RTAIHEVMEQ 465 (721)
T ss_pred HHhcCcccceecCCC---CCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh------hHHHHHHHHh
Confidence 987665444432111 1112222111111000 0000 012589999999995422 1122222111
Q ss_pred ----c--ccCCCCCCCCCEEEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809 181 ----M--DGVGTGSGDKGVLVLAATNHPW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 181 ----l--~~~~~~~~~~~v~vI~ttn~~~-------------~l~~~l~~rf~~~i~ 218 (343)
+ .++...- +.+.-|++++|..+ .|+++|+|||+....
T Consensus 466 QTISIaKAGI~TtL-NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~L 521 (721)
T KOG0482|consen 466 QTISIAKAGINTTL-NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWL 521 (721)
T ss_pred hhhhhhhhccccch-hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhh
Confidence 1 1222221 33567888888653 489999999986654
No 239
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.51 E-value=3.3e-07 Score=91.21 Aligned_cols=150 Identities=25% Similarity=0.229 Sum_probs=85.0
Q ss_pred CCcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc-C---Cccccc
Q psy7809 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-P---SSLTSK 128 (343)
Q Consensus 55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~-~---~~l~~~ 128 (343)
...|.|.+.+|+++.-.+... -...... .++.--++||.|.||+|||.|.+.+++.+-..++.-- . ..|...
T Consensus 285 aPsIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 457889999999987555322 1111111 1344468999999999999999999987755444321 1 111110
Q ss_pred cccchHHHHHHHHHHH---HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC---------CCCCCCCEEEE
Q psy7809 129 HYGESEKLVRALFETA---RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG---------TGSGDKGVLVL 196 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~v~vI 196 (343)
...... ..++.-.+ .-..++|.+|||+|.+-. .....+.+.|++.. ..- +.+.-|+
T Consensus 363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~---------~dr~aihEaMEQQtIsIaKAGI~atL-nARcsvL 430 (682)
T COG1241 363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNE---------EDRVAIHEAMEQQTISIAKAGITATL-NARCSVL 430 (682)
T ss_pred EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCCh---------HHHHHHHHHHHhcEeeecccceeeec-chhhhhh
Confidence 000000 00000000 001247999999998832 23334455554311 111 2356688
Q ss_pred EecCCCC-------------CCCHHHhccccCcch
Q psy7809 197 AATNHPW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 197 ~ttn~~~-------------~l~~~l~~rf~~~i~ 218 (343)
|++|... .|++++++||+-.+.
T Consensus 431 AAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 431 AAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred hhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 8888764 378999999987765
No 240
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.50 E-value=2.9e-07 Score=85.23 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=49.0
Q ss_pred CC-cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-------ceEEEcC
Q psy7809 55 WD-DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-------TFFNVLP 122 (343)
Q Consensus 55 ~~-~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-------~~~~v~~ 122 (343)
|+ ++.|+++.++++.+++.... .+.......++|.||||+|||++|+++++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 45 89999999999998876432 111233467899999999999999999999976 7888766
No 241
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.47 E-value=6.5e-07 Score=82.37 Aligned_cols=82 Identities=30% Similarity=0.398 Sum_probs=57.1
Q ss_pred CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccccccc
Q psy7809 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGE 132 (343)
Q Consensus 55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~~~~~ 132 (343)
.+.++||.+++++.--.+.+. ..+.-.++++||.||||||||.||-++|+++| .||..++.+++.+..+..
T Consensus 23 ~~GlVGQ~~AReAagiiv~mI-------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMI-------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHH-------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred cccccChHHHHHHHHHHHHHH-------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 457999999999876655432 22224668999999999999999999999997 799999999998776655
Q ss_pred hHHHHHHHHHHH
Q psy7809 133 SEKLVRALFETA 144 (343)
Q Consensus 133 ~~~~i~~~~~~a 144 (343)
++ .+.+.|+.+
T Consensus 96 TE-~L~qa~Rra 106 (398)
T PF06068_consen 96 TE-ALTQAFRRA 106 (398)
T ss_dssp HH-HHHHHHHCS
T ss_pred hH-HHHHHHHHh
Confidence 44 344555544
No 242
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=5.7e-06 Score=75.59 Aligned_cols=139 Identities=9% Similarity=-0.016 Sum_probs=85.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCc-------------eEEEcCCccccccccchHHHHHHHHHHHHH-----cCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGST-------------FFNVLPSSLTSKHYGESEKLVRALFETARA-----RAP 149 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~-----~~p 149 (343)
-++..||+|+.|.||+.+++.+++.+-+. ++.++.. +.. .....++.+...... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCc
Confidence 44578899999999999999999887321 1222100 110 112234444333321 245
Q ss_pred cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh
Q psy7809 150 AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL 225 (343)
Q Consensus 150 ~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~ 225 (343)
.|++||++|.+ .....+.|++.++.. +..+++|.+|+.++.+-+.+++|+...-. ..++...
T Consensus 92 KvvII~~~e~m---------~~~a~NaLLK~LEEP-----p~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 92 KILIIKNIEKT---------SNSLLNALLKTIEEP-----PKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred eEEEEeccccc---------CHHHHHHHHHHhhCC-----CCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 69999999888 335677899999864 45678888887889999999997654333 4555544
Q ss_pred hhcCCCCCCcccHHHHHHHccC
Q psy7809 226 CLGEIRKDPNVDVATLSKQLIG 247 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~la~~t~g 247 (343)
.... . .++.....+|..+.|
T Consensus 158 l~~~-~-~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 158 LLSK-N-KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHc-C-CChhHHHHHHHHcCC
Confidence 4432 2 222333445555544
No 243
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.46 E-value=1.5e-06 Score=84.36 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY 130 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~ 130 (343)
.+.+++|.....+.+...+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 3445666655555555444211 1344679999999999999999997665 46899999987642211
Q ss_pred cchHHHHHHHHHH---------------HHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-C
Q psy7809 131 GESEKLVRALFET---------------ARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-G 189 (343)
Q Consensus 131 ~~~~~~i~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~ 189 (343)
-..+|.. ......+.|||||++.|. ...+..|+..++.-. ... .
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~---------~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP---------LNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC---------HHHHHHHHHHHhhCeEEeCCCCcee
Confidence 1111110 011234699999999883 345556666654311 110 1
Q ss_pred CCCEEEEEecCCC
Q psy7809 190 DKGVLVLAATNHP 202 (343)
Q Consensus 190 ~~~v~vI~ttn~~ 202 (343)
...+.+|++|+..
T Consensus 272 ~~~~rii~~~~~~ 284 (445)
T TIGR02915 272 PVDVRIVCATNQD 284 (445)
T ss_pred eeceEEEEecCCC
Confidence 2256788888754
No 244
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.45 E-value=3.6e-06 Score=83.57 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCccccccccch--HHH
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSKHYGES--EKL 136 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~l~~~~~~~~--~~~ 136 (343)
+++++..|.-..+.| ....||+|.|++|+|||+++++++..+.. +|..+...--....+|.. +..
T Consensus 8 ~~~~~~Al~l~av~p-----------~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDP-----------AGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCc-----------cccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 566666666544433 13368999999999999999999998754 666654332222222221 111
Q ss_pred H--------HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-C-------CCCCCCCEEEEEecC
Q psy7809 137 V--------RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV-G-------TGSGDKGVLVLAATN 200 (343)
Q Consensus 137 i--------~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-~-------~~~~~~~v~vI~ttn 200 (343)
+ ..++..| ...||||||+..+ ...++..|++.|+.- . ....+.++++|+|-|
T Consensus 77 l~~g~~~~~pGlla~A---h~GvL~lDe~n~~---------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~ 144 (584)
T PRK13406 77 LRAGRPVAQRGLLAEA---DGGVLVLAMAERL---------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE 144 (584)
T ss_pred hhcCCcCCCCCceeec---cCCEEEecCcccC---------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC
Confidence 1 0111111 1269999999766 557888888888631 0 011245788999844
Q ss_pred CC---CCCCHHHhccccCcch
Q psy7809 201 HP---WDLDEALKRRFEKRIS 218 (343)
Q Consensus 201 ~~---~~l~~~l~~rf~~~i~ 218 (343)
.. ..|++.++.||...+.
T Consensus 145 ~~~~~~~L~~~lLDRf~l~v~ 165 (584)
T PRK13406 145 GAEEDERAPAALADRLAFHLD 165 (584)
T ss_pred ChhcccCCCHHhHhheEEEEE
Confidence 32 3488999999987776
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.45 E-value=1.5e-06 Score=71.67 Aligned_cols=71 Identities=25% Similarity=0.336 Sum_probs=46.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------------------------ccchHHHHHHHHHHH
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------------------------YGESEKLVRALFETA 144 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------------------------~~~~~~~i~~~~~~a 144 (343)
++|+||||+|||+++..++... +.++++++........ ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 4556666553322100 000111122334555
Q ss_pred HHcCCcEEEEcccccccC
Q psy7809 145 RARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 145 ~~~~p~il~iDeid~l~~ 162 (343)
....|.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667788999999998864
No 246
>KOG2228|consensus
Probab=98.44 E-value=3.4e-06 Score=76.23 Aligned_cols=144 Identities=22% Similarity=0.374 Sum_probs=86.2
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHH---HHhCCceEEEcCCcccc-----
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVA---SQHGSTFFNVLPSSLTS----- 127 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia---~~l~~~~~~v~~~~l~~----- 127 (343)
-.+.|..+..+.+.+++..-.. ....+++++.||.|+|||++..... .+.+-+++.+.......
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3557766666666665543211 2466889999999999999876553 35677777765433221
Q ss_pred ----------------ccccchHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809 128 ----------------KHYGESEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 128 ----------------~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
+..|.....+..++...+.. .+.|+++||||.+++... ..++..+...-+..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r-----QtllYnlfDisqs~-- 168 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR-----QTLLYNLFDISQSA-- 168 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh-----hHHHHHHHHHHhhc--
Confidence 11233333344444433321 234778899999976322 12333344433211
Q ss_pred CCCCCCEEEEEecCCCCC---CCHHHhccccCcc
Q psy7809 187 GSGDKGVLVLAATNHPWD---LDEALKRRFEKRI 217 (343)
Q Consensus 187 ~~~~~~v~vI~ttn~~~~---l~~~l~~rf~~~i 217 (343)
..++.|||.|.+.+. |.+.+.+||.+++
T Consensus 169 ---r~Piciig~Ttrld~lE~LEKRVKSRFshr~ 199 (408)
T KOG2228|consen 169 ---RAPICIIGVTTRLDILELLEKRVKSRFSHRV 199 (408)
T ss_pred ---CCCeEEEEeeccccHHHHHHHHHHhhcccce
Confidence 337888888887765 5578888999883
No 247
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.42 E-value=4.7e-06 Score=81.54 Aligned_cols=186 Identities=19% Similarity=0.192 Sum_probs=101.3
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY 130 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~ 130 (343)
.+.+++|.....+.+...+... ......++|.|++||||+++|+++.... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 3456777665555554444311 1345679999999999999999998775 4689999998763211
Q ss_pred cchHHHHHHHHHH---------------HHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-C
Q psy7809 131 GESEKLVRALFET---------------ARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-G 189 (343)
Q Consensus 131 ~~~~~~i~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~ 189 (343)
.-..+|.. ......+.|||||+|.|. ...+..|+..++.-. ... .
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~---------~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP---------LDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC---------HHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 11111110 011124689999999883 345556666654321 100 0
Q ss_pred CCCEEEEEecCCC-------CCCCHHHhcccc-Ccch----------HHHHHhhhhcCC----CC----CCcccHHHHHH
Q psy7809 190 DKGVLVLAATNHP-------WDLDEALKRRFE-KRIS----------PIQIIGLCLGEI----RK----DPNVDVATLSK 243 (343)
Q Consensus 190 ~~~v~vI~ttn~~-------~~l~~~l~~rf~-~~i~----------r~~il~~~~~~~----~~----~~~~~~~~la~ 243 (343)
...+.+|+||+.. ..+.+.+..||. ..|. ...+++.++... .. .+...+..|..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 1246788887653 123455555542 2222 222333333322 11 12222333433
Q ss_pred HccCCCHHHHHHHHHHHHHHH
Q psy7809 244 QLIGYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 244 ~t~g~s~~di~~l~~~A~~~a 264 (343)
..=--+-++|++++++|+..+
T Consensus 351 ~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 351 LAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 332226788888888877654
No 248
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.40 E-value=8.1e-06 Score=71.85 Aligned_cols=66 Identities=24% Similarity=0.216 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
...+-.++||+|||||..++.+|+.+|.+++.++|.+..+ ...+..+|.-+.... +.+++||++.|
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl 96 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRL 96 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhh
Confidence 3456678999999999999999999999999999988554 245667776665544 79999999988
No 249
>KOG2680|consensus
Probab=98.40 E-value=2.4e-05 Score=69.77 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=36.0
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
+.++|+-..+++.--.+.. ...+.-.++.+|+.|+||+|||.+|-.+++.+|.
T Consensus 40 ~GmVGQ~~AR~Aagvi~km-------i~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~ 92 (454)
T KOG2680|consen 40 EGMVGQVKARKAAGVILKM-------IREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGD 92 (454)
T ss_pred ccchhhHHHHHHhHHHHHH-------HHcCcccceEEEEecCCCCCceeeeeehhhhhCC
Confidence 4567776666654332221 1112235678999999999999999999988863
No 250
>PHA00729 NTP-binding motif containing protein
Probab=98.40 E-value=1.5e-06 Score=75.50 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.+++|+|+||||||++|.+++.+++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 589999999999999999999988643
No 251
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.35 E-value=1.5e-06 Score=75.54 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=53.8
Q ss_pred hccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc-----------------------cchHHH
Q psy7809 83 KGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY-----------------------GESEKL 136 (343)
Q Consensus 83 ~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~-----------------------~~~~~~ 136 (343)
.+++....-++|+||||+|||+++..++... +...++++..++..... .+....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 3456777789999999999999999998654 56788887765211000 011112
Q ss_pred HHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 137 VRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 137 i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
+..+...+.+..+++|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 44444445555789999999998864
No 252
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.32 E-value=1.1e-05 Score=78.61 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=62.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHH---------------HHHcC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFET---------------ARARA 148 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~---------------a~~~~ 148 (343)
.....++++|++||||+++|+++.... +.+|+.++|..+.... .-..+|.. .....
T Consensus 164 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 237 (457)
T PRK11361 164 LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERAN 237 (457)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECC
Confidence 344679999999999999999997654 4689999998764221 01111110 01112
Q ss_pred CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCCEEEEEecCCC
Q psy7809 149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKGVLVLAATNHP 202 (343)
Q Consensus 149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~v~vI~ttn~~ 202 (343)
.++|||||+|.|. ...+..|+..++.-. ... ...++.+|++|+..
T Consensus 238 ~gtl~ld~i~~l~---------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 238 EGTLLLDEIGEMP---------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred CCEEEEechhhCC---------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 3699999999983 344556666654321 100 01257788888754
No 253
>KOG0480|consensus
Probab=98.31 E-value=2.5e-06 Score=82.72 Aligned_cols=148 Identities=21% Similarity=0.172 Sum_probs=82.5
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc----CCccc---
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL----PSSLT--- 126 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~----~~~l~--- 126 (343)
-|..|.|.+.+|.-|.-.+..--....-..-.++.-.+|+|.|.||+|||-+.++.+.-+-..+|..- .+.|.
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 35678899999888775553211111000011355568999999999999999999977655444321 11111
Q ss_pred ------cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC--------CCCCC
Q psy7809 127 ------SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG--------SGDKG 192 (343)
Q Consensus 127 ------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~ 192 (343)
+.|.-+.... -. ...+|-+|||||++-.. -..++.+.|++..-. .-+.+
T Consensus 423 vkD~esgdf~iEAGAL-----mL---ADnGICCIDEFDKMd~~---------dqvAihEAMEQQtISIaKAGv~aTLnAR 485 (764)
T KOG0480|consen 423 VKDEESGDFTIEAGAL-----ML---ADNGICCIDEFDKMDVK---------DQVAIHEAMEQQTISIAKAGVVATLNAR 485 (764)
T ss_pred EecCCCCceeeecCcE-----EE---ccCceEEechhcccChH---------hHHHHHHHHHhheehheecceEEeecch
Confidence 1111111000 00 11369999999999321 122344444421100 00224
Q ss_pred EEEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809 193 VLVLAATNHPW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 193 v~vI~ttn~~~-------------~l~~~l~~rf~~~i~ 218 (343)
.-||+++|... .++++++|||+..+.
T Consensus 486 tSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~Fi 524 (764)
T KOG0480|consen 486 TSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFI 524 (764)
T ss_pred hhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEE
Confidence 56788888663 367999999987664
No 254
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=1.1e-05 Score=73.64 Aligned_cols=138 Identities=23% Similarity=0.306 Sum_probs=80.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCCce-EEEcCCcccccc-------ccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-FNVLPSSLTSKH-------YGESEKLVRALFETARARAPAVIFIDEV 157 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-~~v~~~~l~~~~-------~~~~~~~i~~~~~~a~~~~p~il~iDei 157 (343)
..+++|++|||+-|+|||+|.-.+...+..+- ..+....++... .|.. .-+..+-..... .-.||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAA-ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHh-cCCEEEeeee
Confidence 35779999999999999999999988764322 112111111100 0111 111111111111 1259999999
Q ss_pred ccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC-CCCCH-HHhc-cccCcchHHHHHhhhhcCCCCCC
Q psy7809 158 DAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP-WDLDE-ALKR-RFEKRISPIQIIGLCLGEIRKDP 234 (343)
Q Consensus 158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~-~~l~~-~l~~-rf~~~i~r~~il~~~~~~~~~~~ 234 (343)
..= ......+++.|++.|- ..+|++++|+|.+ +.|-+ .+.| +|-- -.++++.++.-+.++.
T Consensus 140 ~Vt------DI~DAMiL~rL~~~Lf-------~~GV~lvaTSN~~P~~LY~dGlqR~~FLP---~I~li~~~~~v~~vD~ 203 (367)
T COG1485 140 EVT------DIADAMILGRLLEALF-------ARGVVLVATSNTAPDNLYKDGLQRERFLP---AIDLIKSHFEVVNVDG 203 (367)
T ss_pred eec------ChHHHHHHHHHHHHHH-------HCCcEEEEeCCCChHHhcccchhHHhhHH---HHHHHHHheEEEEecC
Confidence 532 2344566777777664 2378999999964 44432 3333 4433 4467888887777777
Q ss_pred cccHHHH
Q psy7809 235 NVDVATL 241 (343)
Q Consensus 235 ~~~~~~l 241 (343)
..|+...
T Consensus 204 ~~DYR~r 210 (367)
T COG1485 204 PVDYRLR 210 (367)
T ss_pred Ccccccc
Confidence 7776543
No 255
>KOG2383|consensus
Probab=98.30 E-value=2e-06 Score=79.40 Aligned_cols=159 Identities=22% Similarity=0.288 Sum_probs=87.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCCce--EEEcCCccccc-----------c----ccchH----HHHHHHHHHH
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTF--FNVLPSSLTSK-----------H----YGESE----KLVRALFETA 144 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~--~~v~~~~l~~~-----------~----~~~~~----~~i~~~~~~a 144 (343)
-.+|+|++|||.-|||||+|.-.+...+.... -.+...+++.. . .+... .-+.-+-+..
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 35689999999999999999999875442210 01111111100 0 00000 0011111111
Q ss_pred HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC-CCCCCHHHhccccCcchHHHHH
Q psy7809 145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH-PWDLDEALKRRFEKRISPIQII 223 (343)
Q Consensus 145 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~-~~~l~~~l~~rf~~~i~r~~il 223 (343)
.. .-++|++||+..- ..+..-+++.|...|- ..++++++|+|+ |++|...=+.| +..+.-..+|
T Consensus 191 a~-ea~lLCFDEfQVT------DVADAmiL~rLf~~Lf-------~~GvVlvATSNR~P~dLYknGlQR-~~F~PfI~~L 255 (467)
T KOG2383|consen 191 AE-EAILLCFDEFQVT------DVADAMILKRLFEHLF-------KNGVVLVATSNRAPEDLYKNGLQR-ENFIPFIALL 255 (467)
T ss_pred hh-hceeeeechhhhh------hHHHHHHHHHHHHHHH-------hCCeEEEEeCCCChHHHhhcchhh-hhhhhHHHHH
Confidence 11 1269999999432 3344556666666553 237999999997 45554322222 1222255688
Q ss_pred hhhhcCCCCCCcccHHHHHHHc-cCC--C-HHHHHHHHHH
Q psy7809 224 GLCLGEIRKDPNVDVATLSKQL-IGY--S-GSDIRDLCQE 259 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~la~~t-~g~--s-~~di~~l~~~ 259 (343)
+..+.-+.+.+.+|+...+.-. .+| . ..|+..++++
T Consensus 256 ~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~ 295 (467)
T KOG2383|consen 256 EERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKE 295 (467)
T ss_pred HHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHH
Confidence 8888888888999999444333 222 3 3377666554
No 256
>PRK15115 response regulator GlrR; Provisional
Probab=98.29 E-value=1.2e-05 Score=77.98 Aligned_cols=99 Identities=23% Similarity=0.358 Sum_probs=61.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHH---------------HHHcCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFET---------------ARARAP 149 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~---------------a~~~~p 149 (343)
....++|+|++||||+++|+++.... +.+|+.++|..+..... -..+|.. ......
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 34579999999999999999997764 47899999987643211 1111211 011123
Q ss_pred cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCCEEEEEecCC
Q psy7809 150 AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKGVLVLAATNH 201 (343)
Q Consensus 150 ~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~v~vI~ttn~ 201 (343)
+.|||||+|.|. ...+..|+..++.-. ... ....+.+|++|+.
T Consensus 230 gtl~l~~i~~l~---------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 230 GTLFLDEIGDMP---------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred CEEEEEccccCC---------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC
Confidence 689999999883 344555666554211 100 0125678888875
No 257
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.27 E-value=1.8e-06 Score=66.77 Aligned_cols=25 Identities=44% Similarity=0.764 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
|.|+||||+|||++|+.+|..+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999877543
No 258
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=2.7e-05 Score=63.34 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
....++++|+||+||||++..++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 345789999999999999999998773
No 259
>KOG2170|consensus
Probab=98.18 E-value=1.2e-05 Score=71.83 Aligned_cols=133 Identities=20% Similarity=0.146 Sum_probs=73.8
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----eE--EEcCCcccc-c
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----FF--NVLPSSLTS-K 128 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----~~--~v~~~~l~~-~ 128 (343)
.|.||.-+++.+...+......+. -+.|-.+=|+|++||||.++++.||+.+... ++ ++...++-. +
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 367887777777666654332221 1344456688999999999999999876321 11 010011110 1
Q ss_pred cccch-HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC--CCCCEEEEEecCCCC
Q psy7809 129 HYGES-EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS--GDKGVLVLAATNHPW 203 (343)
Q Consensus 129 ~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~v~vI~ttn~~~ 203 (343)
++..- .+.-..+...+..++.+|+++||+|+|- ..++.++--.++.+.... ...+.++|.-+|.-.
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 11111 2223334455566777899999999993 344555555555322211 133566777776543
No 260
>KOG0477|consensus
Probab=98.18 E-value=5.9e-06 Score=80.01 Aligned_cols=63 Identities=25% Similarity=0.242 Sum_probs=43.4
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.|.|.+.+|.++.-.+..-..+..-....++.-.++||+|.||||||-+.+.+++-....++.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 578999999998866643211111111123444689999999999999999999877665554
No 261
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.17 E-value=1.3e-05 Score=72.41 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=61.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCce---EEEcCCccccccccchHHHHHHHHHHHHH-----------cCCcEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTF---FNVLPSSLTSKHYGESEKLVRALFETARA-----------RAPAVI 152 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~---~~v~~~~l~~~~~~~~~~~i~~~~~~a~~-----------~~p~il 152 (343)
....++||+||+|||||++++.+-..+...- ..++++.. .....+..+++.... ....|+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 3457899999999999999999877664332 22333221 122223222221110 123499
Q ss_pred EEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC-----CCCCEEEEEecCCCC---CCCHHHhcccc
Q psy7809 153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS-----GDKGVLVLAATNHPW---DLDEALKRRFE 214 (343)
Q Consensus 153 ~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~~v~vI~ttn~~~---~l~~~l~~rf~ 214 (343)
||||+..-....-+....-+++.+++..= +.+... .-.++.+|++++... .+++.+.|.|.
T Consensus 105 fiDDlN~p~~d~ygtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~ 173 (272)
T PF12775_consen 105 FIDDLNMPQPDKYGTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN 173 (272)
T ss_dssp EEETTT-S---TTS--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE
T ss_pred EecccCCCCCCCCCCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE
Confidence 99999765442222222223333333321 222211 123678899988643 35666666543
No 262
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.17 E-value=5e-07 Score=84.11 Aligned_cols=145 Identities=26% Similarity=0.238 Sum_probs=71.5
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc-----cc----
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS-----LT---- 126 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~-----l~---- 126 (343)
..|.|.+.+|..+.-.+..............+...++||.|.||+|||.|.+.+++.....++ ++... +.
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceec
Confidence 467899998888764333211110000011245568999999999999999988755443332 22211 11
Q ss_pred -----cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-C-------CCCCE
Q psy7809 127 -----SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-S-------GDKGV 193 (343)
Q Consensus 127 -----~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~-------~~~~v 193 (343)
+.+.-+.. .+-.| ..+|++|||+|.+-. .....|.+.|+.-.-. . -+.+.
T Consensus 103 ~d~~~~~~~leaG-----alvla---d~GiccIDe~dk~~~---------~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 103 RDPVTGEWVLEAG-----ALVLA---DGGICCIDEFDKMKE---------DDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CCGGTSSECEEE------HHHHC---TTSEEEECTTTT--C---------HHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred cccccceeEEeCC-----chhcc---cCceeeecccccccc---------hHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 11111111 11112 237999999999832 2344555555531100 0 02357
Q ss_pred EEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809 194 LVLAATNHPW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 194 ~vI~ttn~~~-------------~l~~~l~~rf~~~i~ 218 (343)
.|++++|... .+++.+++||+-.+.
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~ 203 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFL 203 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEEC
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEE
Confidence 7899998765 367889999997764
No 263
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.16 E-value=7e-06 Score=77.34 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=54.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR 165 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~ 165 (343)
....++++.||+|||||+++.+++... -..--.++...+.... . ...+. .-..+++|+|||+..+.-
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L----~---~~~lg--~v~~~DlLI~DEvgylp~--- 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNI----S---TRQIG--LVGRWDVVAFDEVATLKF--- 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHH----H---HHHHh--hhccCCEEEEEcCCCCcC---
Confidence 456799999999999999999987651 1000222222222110 0 01111 123457999999988643
Q ss_pred chhhhHHHHHHHhhhcccC------CCCCCCCCEEEEEecCC
Q psy7809 166 EHEATRRVRCELLSHMDGV------GTGSGDKGVLVLAATNH 201 (343)
Q Consensus 166 ~~~~~~~~~~~ll~~l~~~------~~~~~~~~v~vI~ttn~ 201 (343)
.....+...|...|+.- ........++++|-++.
T Consensus 275 --~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 275 --AKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred --CchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 12233445555555421 11111335677776664
No 264
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.16 E-value=1.4e-05 Score=67.86 Aligned_cols=71 Identities=27% Similarity=0.295 Sum_probs=44.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc--------------------------cc-----cchH---
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK--------------------------HY-----GESE--- 134 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~--------------------------~~-----~~~~--- 134 (343)
++++||||||||+++..++.+. +..+.+++..+-... .. +...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999887653 556666654221100 00 0000
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 135 KLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 135 ~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
..+..+...+....|.+++||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124444555667889999999987754
No 265
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.12 E-value=1.7e-05 Score=77.36 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=61.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHH---------------HHHHcC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFE---------------TARARA 148 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~---------------~a~~~~ 148 (343)
.....+++.|.+||||+++|+++.... +.+|+.++|..+..... -..+|. ......
T Consensus 155 ~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (463)
T TIGR01818 155 RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQAD 228 (463)
T ss_pred CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECC
Confidence 344579999999999999999998764 46899999987633211 001111 001112
Q ss_pred CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCCEEEEEecCCC
Q psy7809 149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKGVLVLAATNHP 202 (343)
Q Consensus 149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~v~vI~ttn~~ 202 (343)
.+.|||||++.|. ......|+..++.-. .. .....+.+|++|+..
T Consensus 229 ~gtl~l~ei~~l~---------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 229 GGTLFLDEIGDMP---------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCeEEEEchhhCC---------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 4789999999883 234555665554211 10 001245677777653
No 266
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.11 E-value=1.8e-05 Score=76.61 Aligned_cols=79 Identities=29% Similarity=0.421 Sum_probs=54.9
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------cc--------chHHHHHHHHHHHHH
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------YG--------ESEKLVRALFETARA 146 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------~~--------~~~~~i~~~~~~a~~ 146 (343)
+++.+...++|+|+||+|||+++..+|... +..+++++..+-.... .+ .....+..++.....
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 345666789999999999999999998765 5677777764422111 00 011224556666677
Q ss_pred cCCcEEEEcccccccC
Q psy7809 147 RAPAVIFIDEVDAFCS 162 (343)
Q Consensus 147 ~~p~il~iDeid~l~~ 162 (343)
..|.+|+||.+..+..
T Consensus 155 ~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 155 EKPDLVVIDSIQTMYS 170 (446)
T ss_pred hCCCEEEEechhhhcc
Confidence 7899999999998865
No 267
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.10 E-value=3.2e-06 Score=66.54 Aligned_cols=31 Identities=39% Similarity=0.679 Sum_probs=27.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
++|.|+||+||||+|+.+|..++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988776654
No 268
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.09 E-value=2.6e-05 Score=71.74 Aligned_cols=79 Identities=25% Similarity=0.280 Sum_probs=52.2
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc----------------ccccchHHHHHHHHHHH
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS----------------KHYGESEKLVRALFETA 144 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a 144 (343)
+++.....++|+||||||||+|+..++... +....++++.+... ......+..+..+....
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 345666789999999999999998876544 56667776543221 11122233344444444
Q ss_pred HHcCCcEEEEcccccccC
Q psy7809 145 RARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 145 ~~~~p~il~iDeid~l~~ 162 (343)
....+.+|+||-+-.+.+
T Consensus 130 ~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVP 147 (321)
T ss_pred hccCCcEEEEcchhhhcc
Confidence 556789999999998875
No 269
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.09 E-value=1.2e-05 Score=70.73 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=32.5
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
+++..+..++|+|+||+|||+++..+|.+. +..++++++.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 445667789999999999999999998654 6677888776
No 270
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.08 E-value=6.7e-05 Score=68.28 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 62 DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 62 ~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
+..+++|.+.+.... .....+.|+|++|+|||+||+.+++.
T Consensus 2 e~~~~~l~~~L~~~~----------~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS----------NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHHHHTTT----------TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhCCC----------CCeEEEEEEcCCcCCcceeeeecccc
Confidence 344556665554321 34567899999999999999999977
No 271
>PHA02624 large T antigen; Provisional
Probab=98.07 E-value=2.9e-05 Score=76.15 Aligned_cols=120 Identities=19% Similarity=0.158 Sum_probs=70.0
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR 165 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~ 165 (343)
++..+.++|+||+|||||+++.++++.++...+.++++.-.. +-.+..+.. ..+.+||++-.-+-...
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks----------~FwL~pl~D--~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL----------NFELGCAID--QFMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh----------HHHhhhhhh--ceEEEeeeccccccccc
Confidence 355568999999999999999999999976677776443211 111111211 15888999854332111
Q ss_pred --chhhhHHHHHHHhhhcccCCCCC---C------CCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809 166 --EHEATRRVRCELLSHMDGVGTGS---G------DKGVLVLAATNHPWDLDEALKRRFEKRIS 218 (343)
Q Consensus 166 --~~~~~~~~~~~ll~~l~~~~~~~---~------~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 218 (343)
..+..-.-+..|...|||.-..+ + ..--.+|.|+|. ..++..+.-||...+.
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~ 558 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLD 558 (647)
T ss_pred cCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhcc
Confidence 00111112345666777651110 0 001235666665 5688888889888876
No 272
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.06 E-value=2.1e-05 Score=68.52 Aligned_cols=73 Identities=22% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc--cc--------cccccchHHHHHHHHHHHHH--cCCcEEEEc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS--LT--------SKHYGESEKLVRALFETARA--RAPAVIFID 155 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~--l~--------~~~~~~~~~~i~~~~~~a~~--~~p~il~iD 155 (343)
.+..+||||+||+|||++|+.++.. .-++..+... +. ..........+.+.+..+.. ..+..|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3567999999999999999998632 2222222211 00 00011112223333333322 335799999
Q ss_pred ccccccC
Q psy7809 156 EVDAFCS 162 (343)
Q Consensus 156 eid~l~~ 162 (343)
+++.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9998753
No 273
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.06 E-value=5.3e-06 Score=69.45 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=20.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999887
No 274
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.05 E-value=7.7e-06 Score=70.23 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=56.0
Q ss_pred EEEEcCCCchHHHHHHHH-HHH---hCCceEEEcCCccccccccc----hHH-------------HHHHHHHHHHHcCCc
Q psy7809 92 ILLFGPPGTGKTLLAKAV-ASQ---HGSTFFNVLPSSLTSKHYGE----SEK-------------LVRALFETARARAPA 150 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~i-a~~---l~~~~~~v~~~~l~~~~~~~----~~~-------------~i~~~~~~a~~~~p~ 150 (343)
.+++|.||+|||+.|-.. ... -|.+++. +...+.-..... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987655 332 2555554 443232111111 000 001111111111457
Q ss_pred EEEEcccccccCCCCc-hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809 151 VIFIDEVDAFCSGSRE-HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS 218 (343)
Q Consensus 151 il~iDeid~l~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 218 (343)
||+|||+..+++.... ........ .++...... ++-||.+|.++..+++.+++..+..++
T Consensus 82 liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~-------g~diiliTQ~~~~id~~ir~lve~~~~ 142 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHY-------GWDIILITQSPSQIDKFIRDLVEYHYH 142 (193)
T ss_dssp EEEETTGGGTSB---T-T----HHH-HGGGGCCCT-------T-EEEEEES-GGGB-HHHHCCEEEEEE
T ss_pred EEEEECChhhcCCCccccccchHHH-HHHHHhCcC-------CcEEEEEeCCHHHHhHHHHHHHheEEE
Confidence 9999999999875444 22223333 344443322 678999999999999999886555554
No 275
>PF05729 NACHT: NACHT domain
Probab=98.04 E-value=1.5e-05 Score=66.01 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
-++|+|++|+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999776
No 276
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.02 E-value=4.2e-05 Score=82.76 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=56.0
Q ss_pred CCCChhHHHHhhccccccC---CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHH
Q psy7809 32 RRANPELTALVEKDIVQTD---TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ 108 (343)
...+.++.+.+..+++.+. +...+++++|++...+.+...+.... ....-+-|+|++|+||||||++
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----------~~~~vvgI~G~gGiGKTTLA~~ 226 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----------EEVRMVGIWGSSGIGKTTIARA 226 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----------CceEEEEEEcCCCCchHHHHHH
Confidence 3456667777777765444 45677899999999999988775321 3445688999999999999999
Q ss_pred HHHHhCCc
Q psy7809 109 VASQHGST 116 (343)
Q Consensus 109 ia~~l~~~ 116 (343)
+++.+..+
T Consensus 227 l~~~l~~~ 234 (1153)
T PLN03210 227 LFSRLSRQ 234 (1153)
T ss_pred HHHHHhhc
Confidence 98877543
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.02 E-value=3.7e-05 Score=72.52 Aligned_cols=78 Identities=26% Similarity=0.362 Sum_probs=53.4
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------cc--------chHHHHHHHHHHHHHc
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------YG--------ESEKLVRALFETARAR 147 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------~~--------~~~~~i~~~~~~a~~~ 147 (343)
++.+..-++|+|+||+|||+++..+|..+ +..+++++..+-.... .+ .....+..++..+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 34666779999999999999999998765 3467777654321110 00 0112345666666777
Q ss_pred CCcEEEEcccccccC
Q psy7809 148 APAVIFIDEVDAFCS 162 (343)
Q Consensus 148 ~p~il~iDeid~l~~ 162 (343)
.|.+|+||++..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999998864
No 278
>KOG1968|consensus
Probab=97.99 E-value=1.6e-05 Score=81.80 Aligned_cols=201 Identities=20% Similarity=0.193 Sum_probs=113.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhcccc-ChHHHhccCCCC--c-eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKL-MPQLFKGILRPW--R-GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~-~~~~~~~~~~~~--~-~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+..++.+....++.|.......+...+..... .+..+....... . .++++||||+|||+.+..+|.+++..+++.
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence 344556666667788776666566665554311 111111111111 2 368999999999999999999999999999
Q ss_pred cCCccccccccch-------HHHHHHHH---HHHHH-cCC-cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC
Q psy7809 121 LPSSLTSKHYGES-------EKLVRALF---ETARA-RAP-AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS 188 (343)
Q Consensus 121 ~~~~l~~~~~~~~-------~~~i~~~~---~~a~~-~~p-~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 188 (343)
+..+..++..... ...+...+ ..... ... .||++||+|.+... .+..+..+...+..
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~------dRg~v~~l~~l~~k----- 457 (871)
T KOG1968|consen 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE------DRGGVSKLSSLCKK----- 457 (871)
T ss_pred CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch------hhhhHHHHHHHHHh-----
Confidence 9988776543211 11122222 00000 111 29999999988651 22233333333331
Q ss_pred CCCCEEEEEecCCCCCCCHHHhcc--ccCcch-------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809 189 GDKGVLVLAATNHPWDLDEALKRR--FEKRIS-------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQE 259 (343)
Q Consensus 189 ~~~~v~vI~ttn~~~~l~~~l~~r--f~~~i~-------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~ 259 (343)
..+-+|+++|+.......-+.+ |+.++. +..|..++........+-.++.+.+.+ ++||++.+..
T Consensus 458 --s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 458 --SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred --ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence 1456888888876654322222 333333 444444444444334455566776666 6788776554
Q ss_pred HHH
Q psy7809 260 IIL 262 (343)
Q Consensus 260 A~~ 262 (343)
-.+
T Consensus 532 lq~ 534 (871)
T KOG1968|consen 532 LQF 534 (871)
T ss_pred Hhh
Confidence 333
No 279
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.99 E-value=8.6e-05 Score=65.29 Aligned_cols=100 Identities=24% Similarity=0.298 Sum_probs=62.3
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCcccc--------------------------cc----
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTS--------------------------KH---- 129 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~--------------------------~~---- 129 (343)
+++..+..+|+.||||+|||+++..++... +...++++..+-.. ..
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 455777889999999999999999876432 66766665422110 00
Q ss_pred ---ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 130 ---YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 130 ---~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
.......+..+........+.+++||.+..+ ............+..+...+...
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~~~~~~~r~~l~~l~~~l~~~ 150 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLYDDPEELRRFLRALIKFLKSR 150 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTSSSGGGHHHHHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhcCCHHHHHHHHHHHHHHHHHC
Confidence 1123344555556666677899999999999 32233333445666676666433
No 280
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.99 E-value=7.9e-06 Score=79.68 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=45.8
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-CceEEE
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-STFFNV 120 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-~~~~~v 120 (343)
-|+|+.|++++++++.+++.... .++......++|.||||+|||+||+++|+.+. .+++.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa------~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAA------QGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHH------HhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 46799999999999999884321 11223445788999999999999999998774 345544
No 281
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.99 E-value=4.7e-05 Score=70.09 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=51.8
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc----------------ccccchHHHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS----------------KHYGESEKLVRALFETAR 145 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a~ 145 (343)
++....-+.++||||+|||+||-.++... +....+++..+-.. ......+..+..+...+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999887543 66777776633111 111122333333333445
Q ss_pred HcCCcEEEEcccccccC
Q psy7809 146 ARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~ 162 (343)
...+++|+||-+-.+.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 56789999999998875
No 282
>PRK07261 topology modulation protein; Provisional
Probab=97.98 E-value=2.2e-05 Score=65.99 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
-++|.|+||+||||+|+.++..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3789999999999999999999998887776433
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.98 E-value=0.00017 Score=62.07 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=51.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch----HHHHHHHHHHHH---------HcCCcEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES----EKLVRALFETAR---------ARAPAVI 152 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~----~~~i~~~~~~a~---------~~~p~il 152 (343)
.+.++|.||||||||++++.+...+ +..++.+.+..-........ ...+..++.... .....+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 3467889999999999999987554 45566554432211100000 000111111110 1233699
Q ss_pred EEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 153 ~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
+|||+..+ ....+..++..+... ..+++++|-.+.
T Consensus 98 iVDEasmv---------~~~~~~~ll~~~~~~-----~~klilvGD~~Q 132 (196)
T PF13604_consen 98 IVDEASMV---------DSRQLARLLRLAKKS-----GAKLILVGDPNQ 132 (196)
T ss_dssp EESSGGG----------BHHHHHHHHHHS-T------T-EEEEEE-TTS
T ss_pred EEeccccc---------CHHHHHHHHHHHHhc-----CCEEEEECCcch
Confidence 99999655 445566666666532 236778886654
No 284
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=2.2e-05 Score=65.80 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
.|++.||||+||||+|+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999888764
No 285
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.97 E-value=3e-05 Score=70.84 Aligned_cols=134 Identities=23% Similarity=0.310 Sum_probs=86.3
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
+...+...|+.+++.....+.+.+..... ..-...+||.|.+||||-.+|+++-... ..+|+.++|.
T Consensus 195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA 264 (511)
T COG3283 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCA 264 (511)
T ss_pred cccccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecC
Confidence 34456678888998876666655433211 0122468999999999999999885443 5789999998
Q ss_pred ccccccc-----cch--HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC--C----C
Q psy7809 124 SLTSKHY-----GES--EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS--G----D 190 (343)
Q Consensus 124 ~l~~~~~-----~~~--~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~----~ 190 (343)
.+-.... |.. ..--..+|..|.. +-+|+|||..+ +.+++..|+.++..=.-.. . .
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm---------Sp~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM---------SPRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc---------CHHHHHHHHHHhcCCceeecCCcceEE
Confidence 7654311 111 1122345655544 57899999655 6688889999886321110 0 1
Q ss_pred CCEEEEEecCCC
Q psy7809 191 KGVLVLAATNHP 202 (343)
Q Consensus 191 ~~v~vI~ttn~~ 202 (343)
-.|.||++|..+
T Consensus 333 vdVRVIcatq~n 344 (511)
T COG3283 333 VDVRVICATQVN 344 (511)
T ss_pred EEEEEEeccccc
Confidence 257899998764
No 286
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.96 E-value=3e-05 Score=60.90 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=37.8
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.|.||.-+.+.+...+...+..+ .-..|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57898888777777766543222 11333445689999999999999999986
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.96 E-value=0.0001 Score=65.01 Aligned_cols=77 Identities=26% Similarity=0.308 Sum_probs=47.4
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc-----------------------------cc--
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK-----------------------------HY-- 130 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~-----------------------------~~-- 130 (343)
++.+...+++.|++|||||+++..++... +....+++..+-... ..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 34666789999999999999987665543 455555543211100 00
Q ss_pred cchHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809 131 GESEKLVRALFETARARAPAVIFIDEVDAFC 161 (343)
Q Consensus 131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~ 161 (343)
......+..+........|.+++||++-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 0012334445555555578999999998765
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.93 E-value=1.1e-05 Score=67.54 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.++..++|+|+||||||++++.+|..++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 45678999999999999999999999998887653
No 289
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.90 E-value=0.00014 Score=64.46 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=29.3
Q ss_pred hccCCCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEc
Q psy7809 83 KGILRPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVL 121 (343)
Q Consensus 83 ~~~~~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~ 121 (343)
.+++.++..++++||||+|||+++..++.+ -|.+.++++
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 345677888999999999999999887654 244555554
No 290
>PRK09354 recA recombinase A; Provisional
Probab=97.90 E-value=0.0001 Score=68.42 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=51.5
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCcccc----------------ccccchHHHHHHHHHHH
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTS----------------KHYGESEKLVRALFETA 144 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a 144 (343)
+++.....++|+||+|||||+|+-.++.. .+...++++..+-.. ......+..+..+-...
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 34566678999999999999999988644 366677776544211 01111223333333334
Q ss_pred HHcCCcEEEEcccccccC
Q psy7809 145 RARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 145 ~~~~p~il~iDeid~l~~ 162 (343)
....+.+|+||-+-.+.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 556788999999998875
No 291
>KOG0481|consensus
Probab=97.90 E-value=0.00048 Score=65.73 Aligned_cols=150 Identities=22% Similarity=0.210 Sum_probs=78.7
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc----CCcccc---
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL----PSSLTS--- 127 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~----~~~l~~--- 127 (343)
.|.|.+++|+++.=.+.. ........+ .+..-+|||.|.|||.||-|.+-+-+-.-.-++.-- ...|..
T Consensus 332 SIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 678999999999855432 222222222 344568999999999999999988665433333211 011110
Q ss_pred -------ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 128 -------KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 128 -------~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
.|..+... .. ...+|++|||+|++-....-.-....-+.++.-.-.++...- +++.-|++++|
T Consensus 410 RD~~tReFylEGGAM--------VL-ADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~L-NSRtSVLAAAN 479 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAM--------VL-ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTL-NSRTSVLAAAN 479 (729)
T ss_pred ecCCcceEEEecceE--------EE-ecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeee-cchhhhhhhcC
Confidence 01111000 00 012699999999994321110000000001111111332222 34667888888
Q ss_pred CCC-----------C--CCHHHhccccCcch
Q psy7809 201 HPW-----------D--LDEALKRRFEKRIS 218 (343)
Q Consensus 201 ~~~-----------~--l~~~l~~rf~~~i~ 218 (343)
.+. . ..+.+++||+-.+-
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILSRFDmIFI 510 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILSRFDMIFI 510 (729)
T ss_pred CccccccccCCcccccchhhhHhhhccEEEE
Confidence 652 2 34899999986653
No 292
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.89 E-value=3.3e-05 Score=74.91 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=61.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHH---------------HHHcC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFET---------------ARARA 148 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~---------------a~~~~ 148 (343)
.....++++|.+|+||+++|+++-... +.+|+.++|..+..... -..+|.. .....
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~ 233 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEAD 233 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECC
Confidence 344679999999999999999997654 46899999987542211 0111110 11123
Q ss_pred CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCCEEEEEecCCC
Q psy7809 149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKGVLVLAATNHP 202 (343)
Q Consensus 149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~v~vI~ttn~~ 202 (343)
.++|||||+|.|.. ..+..|+..++.-. ... ....+.+|++|+..
T Consensus 234 ~gtl~ldei~~l~~---------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 284 (441)
T PRK10365 234 GGTLFLDEIGDISP---------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCEEEEeccccCCH---------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC
Confidence 57899999999842 34455555554311 100 01245677777653
No 293
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.89 E-value=1.3e-05 Score=67.85 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---eEEEcCCcc
Q psy7809 58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---FFNVLPSSL 125 (343)
Q Consensus 58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~~~~l 125 (343)
++|.++..+++...+. ... ...+..++|+|++|+|||++++.+...+..+ ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6899999999998884 111 1455789999999999999999998766433 666666554
No 294
>KOG1942|consensus
Probab=97.88 E-value=2.3e-05 Score=69.72 Aligned_cols=81 Identities=31% Similarity=0.401 Sum_probs=56.1
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccccccch
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGES 133 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~~~~~~ 133 (343)
..++||++.+++.--.+... ....-.++.+||.||||||||.||-+++.++| .||..+..+++.+..+..+
T Consensus 38 ~g~vGQ~~AReAagiivdli-------k~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKT 110 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLI-------KSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKT 110 (456)
T ss_pred cccccchhhhhhhhHHHHHH-------HhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHH
Confidence 46899998888754433321 11114567899999999999999999999996 5777777777776655444
Q ss_pred HHHHHHHHHHH
Q psy7809 134 EKLVRALFETA 144 (343)
Q Consensus 134 ~~~i~~~~~~a 144 (343)
+. +.+-|+.+
T Consensus 111 Ev-LmenfRRa 120 (456)
T KOG1942|consen 111 EV-LMENFRRA 120 (456)
T ss_pred HH-HHHHHHHH
Confidence 33 33444444
No 295
>KOG0479|consensus
Probab=97.87 E-value=0.00025 Score=68.57 Aligned_cols=151 Identities=28% Similarity=0.282 Sum_probs=82.8
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccch--
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES-- 133 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~-- 133 (343)
.|.|.+.+|++|.-++..-. ...+..+ .++.--++|+.|.|.+.||-|.|.+.+.....+-.- .-.+..+|-+
T Consensus 302 SI~GH~~vKkAillLLlGGv-Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TT---GRGSSGVGLTAA 377 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGV-EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATT---GRGSSGVGLTAA 377 (818)
T ss_pred ccccHHHHHHHHHHHHhccc-eeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccccccc---CCCCCCccceeE
Confidence 57899999999886664321 1111111 134456899999999999999999976542211110 0000111110
Q ss_pred -----HHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhh----c--ccCCCCCCCCCEEEEEecCC
Q psy7809 134 -----EKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSH----M--DGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 134 -----~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~----l--~~~~~~~~~~~v~vI~ttn~ 201 (343)
+..-+.+-.-|.- ...+|++|||||++.. ..+-...+.+++ + .+++..- +.+.-||+++|.
T Consensus 378 VTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsD------iDRvAIHEVMEQqtVTIaKAGIHasL-NARCSVlAAANP 450 (818)
T KOG0479|consen 378 VTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSD------IDRVAIHEVMEQQTVTIAKAGIHASL-NARCSVLAAANP 450 (818)
T ss_pred EeeccccchhhhhcCceEEccCceEEehhcccccc------hhHHHHHHHHhcceEEeEeccchhhh-ccceeeeeecCc
Confidence 0001111111111 1136999999999942 222222232221 1 1333322 447889999997
Q ss_pred CC-------------CCCHHHhccccCcch
Q psy7809 202 PW-------------DLDEALKRRFEKRIS 218 (343)
Q Consensus 202 ~~-------------~l~~~l~~rf~~~i~ 218 (343)
.+ .|+..+++||+..+.
T Consensus 451 vyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv 480 (818)
T KOG0479|consen 451 VYGQYDQSKTPMENIGLPDSLLSRFDLLFV 480 (818)
T ss_pred cccccCCCCChhhccCCcHHHHhhhcEEEE
Confidence 64 278899999987664
No 296
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.87 E-value=9.6e-05 Score=64.60 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=31.1
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
+++..+.-++|+|+||+|||+++..+|.+. +.++++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345666779999999999999999998765 4566667543
No 297
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.85 E-value=7.9e-05 Score=65.84 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=49.4
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCccccc-c------------------------
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTSK-H------------------------ 129 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~~-~------------------------ 129 (343)
+++....-+.|+||||+|||+++..++... +...++++..+-... .
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 345666778999999999999999998543 246677765442110 0
Q ss_pred --ccchHHHHHHHHHHHHHc-CCcEEEEcccccccC
Q psy7809 130 --YGESEKLVRALFETARAR-APAVIFIDEVDAFCS 162 (343)
Q Consensus 130 --~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~ 162 (343)
..+....+..+....... .+.+|+||-+..++.
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 001111223333333445 788999999998753
No 298
>PF14516 AAA_35: AAA-like domain
Probab=97.85 E-value=0.00089 Score=62.44 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=32.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT 126 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~ 126 (343)
.++..+.|.||..+|||++...+.+.+ +...+++++..+.
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 456789999999999999999987655 6777888776654
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00011 Score=69.01 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=58.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh----C-CceEEEcCCcccc--------------ccc--cchHHHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH----G-STFFNVLPSSLTS--------------KHY--GESEKLVRALFETAR 145 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l----~-~~~~~v~~~~l~~--------------~~~--~~~~~~i~~~~~~a~ 145 (343)
..+..++|.||+|+||||++..+|..+ + ..+..+....+.. ..+ ......+...+. .
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~ 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--E 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--H
Confidence 445679999999999999999998764 3 2344444333210 000 001111222222 2
Q ss_pred HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809 146 ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA 208 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~ 208 (343)
.....+|+||.+..... ...+...+..+..... ....++|+.+++..+.+...
T Consensus 213 l~~~DlVLIDTaG~~~~--------d~~l~e~La~L~~~~~--~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQR--------DRTVSDQIAMLHGADT--PVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred hcCCCEEEEcCCCCCcc--------cHHHHHHHHHHhccCC--CCeEEEEecCccChHHHHHH
Confidence 23457999999954311 1122333333432221 12357777777777666543
No 300
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.83 E-value=9.1e-05 Score=66.75 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=60.8
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEE-cCCcccc
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNV-LPSSLTS 127 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v-~~~~l~~ 127 (343)
...+++++-.++..+.+.+.+.. +...++|.||+|+||||+++++...+. ..++.+ ++.++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 34667776666777777666532 334589999999999999999977764 234444 2222221
Q ss_pred c-----ccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 128 K-----HYG-ESEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 128 ~-----~~~-~~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
. .+. .....+..++..+....|++|+++|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1 111 111236677777778899999999994
No 301
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00053 Score=60.15 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=86.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCc---eEEEcCCcccccc---------cc----ch----HHHHHHHHHHHHH-cCC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGST---FFNVLPSSLTSKH---------YG----ES----EKLVRALFETARA-RAP 149 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~~~~l~~~~---------~~----~~----~~~i~~~~~~a~~-~~p 149 (343)
-+.++|+-|+|||.++|++..-+... .++++...+.... .. .. +..-+.+...... ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 46789999999999999776655422 2333332221100 00 01 1112222222233 345
Q ss_pred cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc----cccCcch-------
Q psy7809 150 AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR----RFEKRIS------- 218 (343)
Q Consensus 150 ~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~----rf~~~i~------- 218 (343)
-++++||++.+.. ..+..+.-..+......+.-.+++||-..-...+-....+ |+..+|.
T Consensus 133 v~l~vdEah~L~~---------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 133 VVLMVDEAHDLND---------SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred eEEeehhHhhhCh---------hHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 7999999998843 2222222222221111112245666543322222112222 5555443
Q ss_pred -HHHHHhhhhcC----CCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809 219 -PIQIIGLCLGE----IRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 219 -r~~il~~~~~~----~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~ 266 (343)
-...++..++. ..+.++..+..+...+.|+ |+-|.++|..|...|..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYS 255 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence 23344444443 3445666688899999995 88888888888877763
No 302
>PRK04296 thymidine kinase; Provisional
Probab=97.82 E-value=0.00016 Score=61.91 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=23.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v 120 (343)
-.+++||+|+|||+++..++.++ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999888765 4455545
No 303
>PRK10536 hypothetical protein; Provisional
Probab=97.81 E-value=0.00029 Score=62.52 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.||+|||||+||.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999874
No 304
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.80 E-value=5e-05 Score=65.45 Aligned_cols=67 Identities=21% Similarity=0.370 Sum_probs=42.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCC----ceEEEc-CCcccc---------ccccchHHHHHHHHHHHHHcCCcEEEEcc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGS----TFFNVL-PSSLTS---------KHYGESEKLVRALFETARARAPAVIFIDE 156 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~----~~~~v~-~~~l~~---------~~~~~~~~~i~~~~~~a~~~~p~il~iDe 156 (343)
-++|.||+|+||||++++++..+.. .++.+. +.++.. ..++.....+...+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887742 222221 111111 01121122355666677777899999999
Q ss_pred c
Q psy7809 157 V 157 (343)
Q Consensus 157 i 157 (343)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 305
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.79 E-value=0.00011 Score=64.49 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=30.9
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---C------CceEEEcCCc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---G------STFFNVLPSS 124 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~------~~~~~v~~~~ 124 (343)
+++....-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 345667789999999999999999998653 2 4566666543
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.77 E-value=0.00016 Score=63.91 Aligned_cols=78 Identities=23% Similarity=0.344 Sum_probs=49.9
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc--------------c-----------------
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK--------------H----------------- 129 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~--------------~----------------- 129 (343)
+++..+..++++|+||+|||+++..++.+. +...++++..+-... +
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 345677889999999999999999997543 556665544221100 0
Q ss_pred --ccchHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809 130 --YGESEKLVRALFETARARAPAVIFIDEVDAFC 161 (343)
Q Consensus 130 --~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~ 161 (343)
.......+..+........|.+++||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 01112334444445555678999999998664
No 307
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0079 Score=52.75 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=77.6
Q ss_pred CCceEEEEcCCC-chHHHHHHHHHHHhCC---------ceEEEcCCcccccc-ccchHHHHHHHHHHHH----HcCCcEE
Q psy7809 88 PWRGILLFGPPG-TGKTLLAKAVASQHGS---------TFFNVLPSSLTSKH-YGESEKLVRALFETAR----ARAPAVI 152 (343)
Q Consensus 88 ~~~~vll~Gp~G-tGKT~la~~ia~~l~~---------~~~~v~~~~l~~~~-~~~~~~~i~~~~~~a~----~~~p~il 152 (343)
-....||.|..+ +||..++.-++..+.. .++.+.+..-.... ..-....++.+...+. .....|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 345789999997 9999999988877643 23334322110000 0112334555444443 2334699
Q ss_pred EEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809 153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI 217 (343)
Q Consensus 153 ~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i 217 (343)
+|+++|.| .....+.|++.++.- +.++++|.+|.+++.+.+.++||+...-
T Consensus 94 II~~ae~m---------t~~AANALLKtLEEP-----P~~t~fILit~~~~~LLpTIrSRCq~i~ 144 (263)
T PRK06581 94 IIYSAELM---------NLNAANSCLKILEDA-----PKNSYIFLITSRAASIISTIRSRCFKIN 144 (263)
T ss_pred EEechHHh---------CHHHHHHHHHhhcCC-----CCCeEEEEEeCChhhCchhHhhceEEEe
Confidence 99999988 446788999999853 5578899999999999999999765543
No 308
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.00024 Score=61.32 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=46.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC--------ceEEEcCC-ccccccccc-------------hHHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--------TFFNVLPS-SLTSKHYGE-------------SEKLVRALFETA 144 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--------~~~~v~~~-~l~~~~~~~-------------~~~~i~~~~~~a 144 (343)
..+.+.|+.|||||||||+.|-+|+-+.. .+..++.. ++.+-..+. ..-.-..+....
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 45567999999999999999999987632 23333322 222110000 011123345566
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
..+.|.|+++|||...
T Consensus 215 rsm~PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMSPEVIIVDEIGTE 230 (308)
T ss_pred HhcCCcEEEEeccccH
Confidence 7789999999999644
No 309
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.74 E-value=0.00018 Score=64.05 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
..+..++|.||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34567999999999999999999988754
No 310
>PRK13947 shikimate kinase; Provisional
Probab=97.72 E-value=3.7e-05 Score=64.48 Aligned_cols=31 Identities=39% Similarity=0.482 Sum_probs=28.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+++|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999987654
No 311
>PRK03839 putative kinase; Provisional
Probab=97.72 E-value=3.2e-05 Score=65.54 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=27.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3789999999999999999999999887654
No 312
>PRK00625 shikimate kinase; Provisional
Probab=97.72 E-value=3.6e-05 Score=64.78 Aligned_cols=31 Identities=39% Similarity=0.514 Sum_probs=28.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+|+|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988775
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.71 E-value=0.00025 Score=68.20 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
..|..++|+|++|+||||++..+|..+ +..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 356789999999999999999999776 4555555554
No 314
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.70 E-value=0.00028 Score=60.88 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
...++|.||.|+||||+++.++.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 35789999999999999999984
No 315
>PRK14974 cell division protein FtsY; Provisional
Probab=97.70 E-value=0.00065 Score=63.13 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc-------------------cc-cchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK-------------------HY-GESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~-------------------~~-~~~~~~i~~~~~~a 144 (343)
.+.-++|.|++|+||||++..+|..+ +..+..+.+..+... .. ......+......+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35678999999999999999988765 344544544322110 00 01112233344444
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
......+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4455679999999665
No 316
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.70 E-value=0.00027 Score=66.33 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+.-.+|+||+|+|||+|++.+++...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 34588999999999999999998764
No 317
>PRK13764 ATPase; Provisional
Probab=97.70 E-value=0.00011 Score=72.93 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=43.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEE-cCCccc-----cccccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNV-LPSSLT-----SKHYGESEKLVRALFETARARAPAVIFIDEV 157 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v-~~~~l~-----~~~~~~~~~~i~~~~~~a~~~~p~il~iDei 157 (343)
....++|++||+|+||||++++++..+. ..+..+ ++.++. ..+. ............+....|+++++||+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEi 333 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEM 333 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCC
Confidence 3456899999999999999999998774 233233 122221 1111 00011223333345678999999999
Q ss_pred c
Q psy7809 158 D 158 (343)
Q Consensus 158 d 158 (343)
-
T Consensus 334 R 334 (602)
T PRK13764 334 R 334 (602)
T ss_pred C
Confidence 4
No 318
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.68 E-value=4.2e-05 Score=62.77 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=27.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+++|+|+||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998877654
No 319
>PRK06762 hypothetical protein; Provisional
Probab=97.68 E-value=0.00011 Score=61.23 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=29.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
.-++|+|+||+||||+|+.++..++..+..++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4578999999999999999999996566666654443
No 320
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.68 E-value=0.0003 Score=68.22 Aligned_cols=78 Identities=26% Similarity=0.268 Sum_probs=52.7
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------ccc--------hHHHHHHHHHHHHHc
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------YGE--------SEKLVRALFETARAR 147 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------~~~--------~~~~i~~~~~~a~~~ 147 (343)
++.+..-++|+|+||+|||+++..++... +..+++++..+-.... .+- ....+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45666779999999999999999997755 3467777654322110 000 011245555666677
Q ss_pred CCcEEEEcccccccC
Q psy7809 148 APAVIFIDEVDAFCS 162 (343)
Q Consensus 148 ~p~il~iDeid~l~~ 162 (343)
.|.+|+||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999988764
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.67 E-value=0.00021 Score=64.60 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP 122 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~ 122 (343)
+.+...++|.|+||+|||+++..++... +..+.+++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4566778999999999999999887653 556666554
No 322
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.67 E-value=0.00018 Score=64.18 Aligned_cols=74 Identities=28% Similarity=0.440 Sum_probs=48.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH------HhCCceEEEcCCccccccc-cchHHHHHHHHHHHHH--------cCCcEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVAS------QHGSTFFNVLPSSLTSKHY-GESEKLVRALFETARA--------RAPAVI 152 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~------~l~~~~~~v~~~~l~~~~~-~~~~~~i~~~~~~a~~--------~~p~il 152 (343)
....+||.||.|.|||.||+.+.. .+..+|++++|..+.+... ...-..++..|.-+.. ....+|
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 345699999999999999999863 4567899999998876421 0000112222222211 123699
Q ss_pred EEccccccc
Q psy7809 153 FIDEVDAFC 161 (343)
Q Consensus 153 ~iDeid~l~ 161 (343)
|+|||..|.
T Consensus 287 fldeigelg 295 (531)
T COG4650 287 FLDEIGELG 295 (531)
T ss_pred ehHhhhhcC
Confidence 999998884
No 323
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.67 E-value=0.00036 Score=62.72 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=29.5
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
+++.++..++++|+||+|||+++-.++... +.+..+++.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345677789999999999999999987543 456555554
No 324
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.67 E-value=7.2e-05 Score=67.70 Aligned_cols=99 Identities=24% Similarity=0.337 Sum_probs=59.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---eEEEc-CCcc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---FFNVL-PSSL 125 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~-~~~l 125 (343)
....+++++.-...+.+.+.+++.... ....++++.|++|+||||+++++...+... ++.+. ..++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 344577888766666666666554321 345689999999999999999999877433 33332 2222
Q ss_pred cccc-----c--cchHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 126 TSKH-----Y--GESEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 126 ~~~~-----~--~~~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
.-.. . .........++..+....|++|+++|+.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1110 0 1112236677777888899999999994
No 325
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.66 E-value=0.00016 Score=67.82 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC----ceEEEc-CCccc---------cccccchHHHHHHHHHHHHHcCCcEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS----TFFNVL-PSSLT---------SKHYGESEKLVRALFETARARAPAVIF 153 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~----~~~~v~-~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~ 153 (343)
+...++|.||+|+||||+.+++...+.. .++.+. +.++. ....+.....+...+..+....|++|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3456899999999999999999887642 233331 11211 111122122356667777778999999
Q ss_pred Ecccc
Q psy7809 154 IDEVD 158 (343)
Q Consensus 154 iDeid 158 (343)
+||+.
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99993
No 326
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.66 E-value=3.9e-05 Score=62.14 Aligned_cols=27 Identities=48% Similarity=0.883 Sum_probs=23.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
++++||||+||||+|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999984433
No 327
>KOG3347|consensus
Probab=97.65 E-value=4.3e-05 Score=61.31 Aligned_cols=33 Identities=36% Similarity=0.646 Sum_probs=29.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
..++|++|-|||||||++..+|..++.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 358999999999999999999999999888774
No 328
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.65 E-value=0.0006 Score=73.12 Aligned_cols=122 Identities=26% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc------ccc-ccc--hHHHH-HHHHHHHHHcCCcEEEEcc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT------SKH-YGE--SEKLV-RALFETARARAPAVIFIDE 156 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~------~~~-~~~--~~~~i-~~~~~~a~~~~p~il~iDe 156 (343)
+..+++||.|.||+|||+|..++|+..|-..+.++.++-. +.+ +++ .+-.+ ..-|-.|... ...++|||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeeh
Confidence 4457899999999999999999999999999999876532 111 111 00011 1122223332 25899999
Q ss_pred cccccCCCCchhhhHHHHHHHhhhcccCCCC---------CCCCCEEEEEecCCCC------CCCHHHhccccCcch
Q psy7809 157 VDAFCSGSREHEATRRVRCELLSHMDGVGTG---------SGDKGVLVLAATNHPW------DLDEALKRRFEKRIS 218 (343)
Q Consensus 157 id~l~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~~v~vI~ttn~~~------~l~~~l~~rf~~~i~ 218 (343)
+..- +..++.-|-.+++..... ....++.|.++-|..+ .|+..++.||.....
T Consensus 1620 iNLa---------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~ 1687 (4600)
T COG5271 1620 INLA---------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKM 1687 (4600)
T ss_pred hhhh---------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEe
Confidence 9533 445555565665532211 0123567777776553 489999999877654
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.65 E-value=0.00018 Score=65.96 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc-CCccc-------cccccchHHHHHHHHHHHHHcCCcEEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL-PSSLT-------SKHYGESEKLVRALFETARARAPAVIFI 154 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~-~~~l~-------~~~~~~~~~~i~~~~~~a~~~~p~il~i 154 (343)
...++++.||+|+||||++++++..+. ..++.+. ..++. ..........+..++..+....|+.|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 446899999999999999999998762 2333331 11111 0001111114677888888899999999
Q ss_pred cccc
Q psy7809 155 DEVD 158 (343)
Q Consensus 155 Deid 158 (343)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9993
No 330
>PRK04328 hypothetical protein; Provisional
Probab=97.65 E-value=0.0006 Score=60.95 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=23.9
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
+++.++..++++||||+|||+++..++.+
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567788999999999999999987654
No 331
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.64 E-value=0.00025 Score=58.31 Aligned_cols=27 Identities=44% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++-.++|.||+|||||++.+.+|...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 566679999999999999999999754
No 332
>PRK05973 replicative DNA helicase; Provisional
Probab=97.64 E-value=0.00063 Score=60.02 Aligned_cols=39 Identities=36% Similarity=0.373 Sum_probs=30.2
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
+++.++..++|.|+||+|||+++-.++... |.++++++.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 345777789999999999999999887644 666666554
No 333
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.64 E-value=0.00022 Score=59.72 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=44.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc-----------------cchHHHHHHHHHHHHHcCCcEEEE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-----------------GESEKLVRALFETARARAPAVIFI 154 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~-----------------~~~~~~i~~~~~~a~~~~p~il~i 154 (343)
+|+.|++|+|||++|..++...+.+.+++....-.+... .+....+...+... ..+.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 589999999999999999988777777775443222110 11122233333221 14679999
Q ss_pred cccccccC
Q psy7809 155 DEVDAFCS 162 (343)
Q Consensus 155 Deid~l~~ 162 (343)
|-+..+..
T Consensus 80 Dclt~~~~ 87 (169)
T cd00544 80 DCLTLWVT 87 (169)
T ss_pred EcHhHHHH
Confidence 99988765
No 334
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.63 E-value=4.7e-05 Score=63.21 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=29.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47899999999999999999999999998875
No 335
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.63 E-value=0.00019 Score=67.66 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=45.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc-CCcccc-----------ccccchHHHHHHHHHHHHHcCCcEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL-PSSLTS-----------KHYGESEKLVRALFETARARAPAVI 152 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~-~~~l~~-----------~~~~~~~~~i~~~~~~a~~~~p~il 152 (343)
..++++||+|+||||+++++..++. .+++.+. +.++.- ..++.....+...+..+....|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999987762 3344442 112110 1112112235667777778899999
Q ss_pred EEcccc
Q psy7809 153 FIDEVD 158 (343)
Q Consensus 153 ~iDeid 158 (343)
++.|+.
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999994
No 336
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00047 Score=65.29 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=59.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC-------Cce--EEEcCCcccc------------c--cccchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG-------STF--FNVLPSSLTS------------K--HYGESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~--~~v~~~~l~~------------~--~~~~~~~~i~~~~~~a 144 (343)
.+..++|+||+|+||||++..+|..+. ..+ +.+++..... - ........+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356799999999999999999987652 233 3444321110 0 1111222333333333
Q ss_pred HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809 145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206 (343)
Q Consensus 145 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~ 206 (343)
....+|+||.+..... ....+..+...++..... ...++|+.+|.....+.
T Consensus 253 --~~~DlVLIDTaGr~~~-------~~~~l~el~~~l~~~~~~--~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK-------DFMKLAEMKELLNACGRD--AEFHLAVSSTTKTSDVK 303 (388)
T ss_pred --CCCCEEEEcCCCCCcc-------CHHHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHH
Confidence 3457999999976632 111233444444433211 23567777766655554
No 337
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.62 E-value=0.00044 Score=61.34 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=29.6
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP 122 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~ 122 (343)
++.++.-++|.|+||+|||+++..++... +.++.++++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 34666779999999999999999887544 667776654
No 338
>PRK13695 putative NTPase; Provisional
Probab=97.62 E-value=0.0006 Score=57.39 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=20.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++|.|++|+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987765
No 339
>KOG1051|consensus
Probab=97.62 E-value=0.00045 Score=71.03 Aligned_cols=144 Identities=22% Similarity=0.317 Sum_probs=94.2
Q ss_pred CCccccc-HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcCC
Q psy7809 55 WDDIAGL-DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLPS 123 (343)
Q Consensus 55 ~~~l~G~-~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~~ 123 (343)
++-++|. ++-.+.+.+.+... ..++-+|.|.||+|||.++.-++... +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL~Rr------------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRK------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHHhcc------------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5667776 55555665555442 22677999999999999999999875 2345666655
Q ss_pred ccc--cccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 124 SLT--SKHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 124 ~l~--~~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
.+. .++-++.+..++.+.+.+... ..-||||||++.+.+.+.... .-... .++..+-. ...+.+||+|.
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~~d~~-nlLkp~L~------rg~l~~IGatT 324 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-AIDAA-NLLKPLLA------RGGLWCIGATT 324 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-HHHHH-HhhHHHHh------cCCeEEEeccc
Confidence 443 345677788899999888743 456999999999987544311 11222 23333322 22488999887
Q ss_pred CCC-----CCCHHHhccccCcch
Q psy7809 201 HPW-----DLDEALKRRFEKRIS 218 (343)
Q Consensus 201 ~~~-----~l~~~l~~rf~~~i~ 218 (343)
... .-+|++-+||+....
T Consensus 325 ~e~Y~k~iekdPalErrw~l~~v 347 (898)
T KOG1051|consen 325 LETYRKCIEKDPALERRWQLVLV 347 (898)
T ss_pred HHHHHHHHhhCcchhhCcceeEe
Confidence 321 246788888876665
No 340
>PRK13949 shikimate kinase; Provisional
Probab=97.61 E-value=5.7e-05 Score=63.38 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=28.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
..++|.|+||+|||++++.+|..++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999998887765
No 341
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.61 E-value=6.6e-05 Score=64.02 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=45.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEc-CCccccc---c---------c-cchHHHHHHHHHHHHHcCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVL-PSSLTSK---H---------Y-GESEKLVRALFETARARAPA 150 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~-~~~l~~~---~---------~-~~~~~~i~~~~~~a~~~~p~ 150 (343)
.....++|.||+|+||||++++++..+.. ..+.+. ..++... . . +.....+..++..+....|+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 45678999999999999999999987632 222221 1111100 0 0 01122356677777778899
Q ss_pred EEEEccc
Q psy7809 151 VIFIDEV 157 (343)
Q Consensus 151 il~iDei 157 (343)
+++++|+
T Consensus 103 ~i~igEi 109 (186)
T cd01130 103 RIIVGEV 109 (186)
T ss_pred EEEEEcc
Confidence 9999999
No 342
>PRK14532 adenylate kinase; Provisional
Probab=97.60 E-value=6e-05 Score=64.27 Aligned_cols=30 Identities=33% Similarity=0.674 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.||||+||||+++.+|+.++..++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998765543
No 343
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.60 E-value=0.00019 Score=66.79 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=48.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEE-cCCcccc-----------cc--ccchHHHHHHHHHHHHHcCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNV-LPSSLTS-----------KH--YGESEKLVRALFETARARAPA 150 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v-~~~~l~~-----------~~--~~~~~~~i~~~~~~a~~~~p~ 150 (343)
....+++++|++|+||||+++++...... .++.+ +..++.- .. .+...-....++..+....|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 45578999999999999999999987753 23322 1112211 00 111122467788888899999
Q ss_pred EEEEcccc
Q psy7809 151 VIFIDEVD 158 (343)
Q Consensus 151 il~iDeid 158 (343)
.|++.|+.
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999994
No 344
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.59 E-value=0.00066 Score=59.59 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=29.7
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
+++.++..+++.|+||+|||+++..++... +...++++.
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344667789999999999999999887543 556666654
No 345
>PRK13948 shikimate kinase; Provisional
Probab=97.59 E-value=8.6e-05 Score=62.96 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=32.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.++..++|.|.+|+|||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 56789999999999999999999999999998665
No 346
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.58 E-value=0.00036 Score=58.54 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=45.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHH--------------------HHHHHHHHHHHcCCc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEK--------------------LVRALFETARARAPA 150 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~--------------------~i~~~~~~a~~~~p~ 150 (343)
.+++.|+||+|||++|..++..++.+++++........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 47999999999999999999998877777655432211 1111 233333221 13356
Q ss_pred EEEEcccccccC
Q psy7809 151 VIFIDEVDAFCS 162 (343)
Q Consensus 151 il~iDeid~l~~ 162 (343)
+++||-+..+..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999988754
No 347
>PRK06217 hypothetical protein; Validated
Probab=97.58 E-value=7e-05 Score=63.65 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=28.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.|+|.|++|+||||++++++..++.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999998877665
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.58 E-value=6.8e-05 Score=63.58 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=26.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
+++.||||+||||+|+.+|..++...+ +..++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence 689999999999999999999986544 444443
No 349
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.57 E-value=6.7e-05 Score=61.11 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
+-+.|||||||||+++.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999998876
No 350
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.57 E-value=0.00034 Score=63.06 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..+++|.||+|+||||+.+.++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 36899999999999999999998764
No 351
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.56 E-value=7.4e-05 Score=63.01 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=27.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
+-++|.|+||+||||+|+.++..++..++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 468999999999999999999998876665443
No 352
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.55 E-value=0.00033 Score=67.26 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=64.2
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE----cCCc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV----LPSS 124 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v----~~~~ 124 (343)
......|++++......+.+...+.. |..-+|+.||.|+||||...++..+++.+...+ ++-+
T Consensus 231 ~~~~l~l~~Lg~~~~~~~~~~~~~~~-------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 231 DQVILDLEKLGMSPFQLARLLRLLNR-------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred ccccCCHHHhCCCHHHHHHHHHHHhC-------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 33467788888888888888877753 223467889999999999999999886543322 1112
Q ss_pred cccccccc------hHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 125 LTSKHYGE------SEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 125 l~~~~~~~------~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
+.-..+.. ..-.+...++....+.|+||.+.||-
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11111111 11125566677777899999999994
No 353
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.54 E-value=0.00084 Score=57.69 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=40.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh---CCc--eEEEcCCccccc-----------------c-ccchHHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH---GST--FFNVLPSSLTSK-----------------H-YGESEKLVRALFETAR 145 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~--~~~v~~~~l~~~-----------------~-~~~~~~~i~~~~~~a~ 145 (343)
|+-++|.||+|+||||.+-.+|..+ +.. ++..+....... . .......+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999999888766 333 333332221100 0 0112233444555555
Q ss_pred HcCCcEEEEcccccc
Q psy7809 146 ARAPAVIFIDEVDAF 160 (343)
Q Consensus 146 ~~~p~il~iDeid~l 160 (343)
...-.+|+||-....
T Consensus 81 ~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS 95 (196)
T ss_dssp HTTSSEEEEEE-SSS
T ss_pred hcCCCEEEEecCCcc
Confidence 544579999987433
No 354
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.0016 Score=61.37 Aligned_cols=73 Identities=21% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------cc---------ccchHHHHHHHHHHHHH-c
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------KH---------YGESEKLVRALFETARA-R 147 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------~~---------~~~~~~~i~~~~~~a~~-~ 147 (343)
.+..++|.||+|+||||++..+|..+ +..+..+++..... .+ .......+...+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35679999999999999999999776 33444444432210 00 01223334445544443 2
Q ss_pred CCcEEEEcccccc
Q psy7809 148 APAVIFIDEVDAF 160 (343)
Q Consensus 148 ~p~il~iDeid~l 160 (343)
..++||||-....
T Consensus 320 ~~DvVLIDTaGRs 332 (436)
T PRK11889 320 RVDYILIDTAGKN 332 (436)
T ss_pred CCCEEEEeCcccc
Confidence 3579999988554
No 355
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.00031 Score=59.60 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=22.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
-++|.|+||+|||++|+.+|+++...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 37899999999999999999998543
No 356
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.51 E-value=0.0006 Score=62.11 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh----C-CceEEEcCCc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH----G-STFFNVLPSS 124 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~-~~~~~v~~~~ 124 (343)
.+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45678899999999999999998765 3 4555555543
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.51 E-value=0.00072 Score=56.29 Aligned_cols=73 Identities=21% Similarity=0.155 Sum_probs=44.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcccc--------cccc-----chHHHHHHHHHHHHHcCCcE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTS--------KHYG-----ESEKLVRALFETARARAPAV 151 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~--------~~~~-----~~~~~i~~~~~~a~~~~p~i 151 (343)
.++..+.|.||+|+|||||.+.++...... -+.++..++.. ..++ .....-+-.+..+....|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 566789999999999999999999765211 12222211110 0010 01122334466677788999
Q ss_pred EEEccccc
Q psy7809 152 IFIDEVDA 159 (343)
Q Consensus 152 l~iDeid~ 159 (343)
+++||--.
T Consensus 104 lllDEP~~ 111 (163)
T cd03216 104 LILDEPTA 111 (163)
T ss_pred EEEECCCc
Confidence 99999853
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.00027 Score=59.72 Aligned_cols=72 Identities=25% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcc--cccc--ccchHHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSL--TSKH--YGESEKLVRALFETARARAPAVIFIDEVDA 159 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l--~~~~--~~~~~~~i~~~~~~a~~~~p~il~iDeid~ 159 (343)
.++..+.|.||.|+|||||++.++..+... -+.++...+ .... ... ...-+-.+..+....|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 455678899999999999999999765211 111211111 0010 111 11233345556667899999999853
No 359
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.50 E-value=9.7e-05 Score=60.50 Aligned_cols=28 Identities=36% Similarity=0.743 Sum_probs=24.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
++|.|+||+||||+|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876553
No 360
>PRK14531 adenylate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=62.48 Aligned_cols=30 Identities=33% Similarity=0.692 Sum_probs=26.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+++.||||+||||+++.+|..++.+.+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 589999999999999999999998776543
No 361
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.50 E-value=0.0001 Score=59.84 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=27.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+.|.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999887765
No 362
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.49 E-value=0.00059 Score=55.61 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=43.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCc---cccccccchHHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSS---LTSKHYGESEKLVRALFETARARAPAVIFIDEVDA 159 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~---l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~ 159 (343)
.++..+.|.||+|+|||||+++++..+... -+.++... +.....+. ..-+-.+..+....|.++++||-..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G--~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGG--EKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHH--HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 566778999999999999999999765321 11111110 00001111 1222334556667889999999854
No 363
>PRK14530 adenylate kinase; Provisional
Probab=97.49 E-value=0.00012 Score=63.98 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.||||+||||+++.+|..++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 689999999999999999999999776643
No 364
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.49 E-value=0.0036 Score=66.27 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=24.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+-++|+||+|.|||+++..++...+ ++..++
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 4589999999999999999987766 544443
No 365
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.49 E-value=0.00014 Score=61.19 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=30.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
...++|.|++|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999988877653
No 366
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.49 E-value=0.0001 Score=63.00 Aligned_cols=29 Identities=41% Similarity=0.721 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
|+|.||||+|||++++.+|..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998766554
No 367
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.48 E-value=0.00075 Score=62.89 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=29.3
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS 124 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~ 124 (343)
+++....-+.|+||||||||.++..+|-.. +..+++++...
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 345556678899999999999999887422 24566666533
No 368
>PRK06547 hypothetical protein; Provisional
Probab=97.48 E-value=0.00013 Score=61.41 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
..+.-|++.|++|||||++++.++..++..++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45567889999999999999999999887766543
No 369
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.47 E-value=0.00014 Score=63.97 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=27.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..++|.||||+||||+|+.+|+.++.+++.+
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 34599999999999999999999999776655
No 370
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.47 E-value=0.00051 Score=67.19 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=60.5
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEc-CCcccc
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVL-PSSLTS 127 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~-~~~l~~ 127 (343)
..+++++.-.++..+.+...+.. +..-++++||+|+||||+..++..++. .+++.+. +.++.-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 45677776667777777776642 223478999999999999998877764 2344432 222211
Q ss_pred cc-----ccc-hHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 128 KH-----YGE-SEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 128 ~~-----~~~-~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
.. +.. ....+......+....|++|++.|+-
T Consensus 285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 111 11235566777778899999999994
No 371
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.46 E-value=0.00064 Score=63.03 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=31.3
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS 124 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~ 124 (343)
+++..+.-++|+||||+|||+++-.+|... +..+++++..+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 345666778999999999999999998653 23677776654
No 372
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.46 E-value=0.0018 Score=56.51 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.7
Q ss_pred ceEEEEcCCCchHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia 110 (343)
+.++|+||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 668999999999999999998
No 373
>KOG2543|consensus
Probab=97.46 E-value=0.0014 Score=60.70 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=47.6
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
..+.+.+.+++.+..++.... ..-|..++|||..|||||.+++.+.+.++.+...++|-+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNS---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred cCccchHHHHHHHHHHhCCCC---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 356777888888887774321 1345678999999999999999999999998888877543
No 374
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.46 E-value=0.0001 Score=61.25 Aligned_cols=28 Identities=36% Similarity=0.710 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
++|.||+|+||||+++.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999865543
No 375
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.46 E-value=0.00022 Score=63.93 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=51.1
Q ss_pred cCCCCce-EEEEcCCCchHHHHHHHHHHHhCC----ceEEE-cCCcccc---------ccccchHHHHHHHHHHHHHcCC
Q psy7809 85 ILRPWRG-ILLFGPPGTGKTLLAKAVASQHGS----TFFNV-LPSSLTS---------KHYGESEKLVRALFETARARAP 149 (343)
Q Consensus 85 ~~~~~~~-vll~Gp~GtGKT~la~~ia~~l~~----~~~~v-~~~~l~~---------~~~~~~~~~i~~~~~~a~~~~p 149 (343)
....++| ||+.||+||||||..-++-.+.+. +.+.+ ++-++.. ..+|.-...+...++.|....|
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDP 199 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDP 199 (353)
T ss_pred HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC
Confidence 3344455 778899999999999999888764 33333 2222221 2344445557777888888899
Q ss_pred cEEEEcccccc
Q psy7809 150 AVIFIDEVDAF 160 (343)
Q Consensus 150 ~il~iDeid~l 160 (343)
+||++-|+-.+
T Consensus 200 DVIlvGEmRD~ 210 (353)
T COG2805 200 DVILVGEMRDL 210 (353)
T ss_pred CEEEEeccccH
Confidence 99999999433
No 376
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.46 E-value=0.00024 Score=56.36 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+++++||+|+|||+++-.++.++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 689999999999999988876653
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.45 E-value=0.0015 Score=54.85 Aligned_cols=33 Identities=36% Similarity=0.387 Sum_probs=26.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
.+++.|+||+|||++++.++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 36889999999999999998775 5566666654
No 378
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.44 E-value=0.001 Score=56.10 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
.++.-+.|.||.|+|||||.+++..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5556788999999999999999964
No 379
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.00095 Score=63.78 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=44.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
.++|+||.+|||||+++.+.......+++++..++......- ......+..+.......+|||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc
Confidence 789999999999999988888776556666665555433221 11122222222224469999999876
No 380
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.43 E-value=0.00085 Score=65.89 Aligned_cols=79 Identities=23% Similarity=0.163 Sum_probs=54.7
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc--------------------------cc--cc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK--------------------------HY--GE 132 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~--------------------------~~--~~ 132 (343)
+++.++..+|+.||||+|||+++-.++... +.+.++++..+-... +. ..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 456777889999999999999999998754 445555543221100 00 01
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 133 SEKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 133 ~~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
....+..+........|.+|+||-+..+..
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 145567777777788899999999987743
No 381
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0025 Score=60.63 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=56.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc-------c------ccchHHHHHHHHHHHHHcCCcE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK-------H------YGESEKLVRALFETARARAPAV 151 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~-------~------~~~~~~~i~~~~~~a~~~~p~i 151 (343)
+..++|.||+|+||||++..+|..+ +..+..+++...... + .......+..+...+.....++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4458899999999999999998754 344544544332211 0 0001111333444444445678
Q ss_pred EEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206 (343)
Q Consensus 152 l~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~ 206 (343)
|+||=...... ....+..|...++..........++|+.++...+.+.
T Consensus 303 VLIDTaGr~~r-------d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 303 ILIDTAGYSHR-------NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred EEEeCCCCCcc-------CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 99996532211 1123334444333221111123566666666655443
No 382
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.43 E-value=0.00078 Score=62.15 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=30.1
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS 124 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~ 124 (343)
+++....-+.|+||||+|||.++..+|-.. +...++++..+
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 445666778899999999999999887422 34567776543
No 383
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.42 E-value=0.00087 Score=61.94 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=31.2
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS 124 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~ 124 (343)
+++..+.-++|+||||+|||+++-.+|... +...++++..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 345666678999999999999999998663 23677777654
No 384
>PRK13946 shikimate kinase; Provisional
Probab=97.42 E-value=0.00014 Score=61.90 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=30.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+..|+|.|.+|||||++++.+|..++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999987765
No 385
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.42 E-value=0.00075 Score=59.49 Aligned_cols=116 Identities=13% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEcCCcccccc--------c------cchHHH-------HHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVLPSSLTSKH--------Y------GESEKL-------VRALFE 142 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~~~~l~~~~--------~------~~~~~~-------i~~~~~ 142 (343)
..+-.+++.|++|||||+++..+...+.. +++.+.. .....+ + .+.+.. +.....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 45568999999999999999999876643 2233322 111111 0 000111 112222
Q ss_pred HHHH---cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809 143 TARA---RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI 217 (343)
Q Consensus 143 ~a~~---~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i 217 (343)
.... ..+.+|+|||+..- ......+..+...-. --++.+|..+...-.+++.++.-.+..+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~~-------~~k~~~l~~~~~~gR-------H~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGDK-------KLKSKILRQFFNNGR-------HYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred hhcccCCCCCeEEEEeCCCCc-------hhhhHHHHHHHhccc-------ccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1111 22579999998321 111223333333211 1267888888888899999877555443
No 386
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.42 E-value=0.00017 Score=60.44 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=28.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
..++|.|++|+|||++++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36889999999999999999999999887654
No 387
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.42 E-value=0.00059 Score=63.00 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc-CCcccccc------ccchHHHHHHHHHHHHHcCCcEEEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL-PSSLTSKH------YGESEKLVRALFETARARAPAVIFI 154 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~-~~~l~~~~------~~~~~~~i~~~~~~a~~~~p~il~i 154 (343)
....++++.|++|+||||++++++.... ..++.+. ..++.... ..........++..+....|+.|++
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~Iiv 221 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIV 221 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEE
Confidence 3446899999999999999999998762 2333332 22222110 0011123667778888899999999
Q ss_pred ccc
Q psy7809 155 DEV 157 (343)
Q Consensus 155 Dei 157 (343)
.|+
T Consensus 222 GEi 224 (323)
T PRK13833 222 GEV 224 (323)
T ss_pred eec
Confidence 999
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00091 Score=55.20 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=44.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcccc-------c-------cccchHHHHHHHHHHHHHcCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTS-------K-------HYGESEKLVRALFETARARAPA 150 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~-------~-------~~~~~~~~i~~~~~~a~~~~p~ 150 (343)
.++..+.|.||.|+|||+++++++..+... -+.++...+.. . ..++ ..-+-.+..+....|.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G--~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG--QRQRVALARALLLNPD 100 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH--HHHHHHHHHHHhcCCC
Confidence 555678999999999999999999866321 12232221110 0 1111 1222335555666789
Q ss_pred EEEEcccccc
Q psy7809 151 VIFIDEVDAF 160 (343)
Q Consensus 151 il~iDeid~l 160 (343)
++++||...=
T Consensus 101 i~ilDEp~~~ 110 (157)
T cd00267 101 LLLLDEPTSG 110 (157)
T ss_pred EEEEeCCCcC
Confidence 9999999643
No 389
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.41 E-value=0.00045 Score=65.06 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..+..++|.||+|+|||++++.+++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4556699999999999999999998754
No 390
>PRK10436 hypothetical protein; Provisional
Probab=97.41 E-value=0.00053 Score=66.49 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEc-CCcccc
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVL-PSSLTS 127 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~-~~~l~~ 127 (343)
..++++++-.+...+.+...+. .+..-+|++||+|+||||+..++..++.. +++.+. +.++.-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~-------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ-------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH-------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 3467777766777777777664 23346889999999999999888777643 333331 222211
Q ss_pred c-----ccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 128 K-----HYG-ESEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 128 ~-----~~~-~~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
. .++ .....+...+..+..+.|++|++.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1 111 111236677777788899999999994
No 391
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.40 E-value=0.0012 Score=67.51 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=50.1
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHH---HhCCceEEEcCCcccc----------------ccccchHHHHHHHHHHH
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVAS---QHGSTFFNVLPSSLTS----------------KHYGESEKLVRALFETA 144 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~---~l~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a 144 (343)
+++.....++|+||+|||||+|+..++. ..+....+++..+-.. ......+..+..+-...
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 3456677899999999999999977654 3355666666543221 00111222333333334
Q ss_pred HHcCCcEEEEcccccccC
Q psy7809 145 RARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 145 ~~~~p~il~iDeid~l~~ 162 (343)
....+.+|+||-+..+.+
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 455789999999999885
No 392
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.40 E-value=0.00067 Score=55.61 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=27.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS 124 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~ 124 (343)
++|+|+||+|||++++.++..+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 6899999999999999999988 65666665433
No 393
>PHA02774 E1; Provisional
Probab=97.40 E-value=0.0011 Score=64.93 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=27.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceE-EEcC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFF-NVLP 122 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~-~v~~ 122 (343)
-+.++|+||||||||++|-++++.++..++ .++.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 358999999999999999999999864443 3543
No 394
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.40 E-value=0.0017 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia 110 (343)
++.-++|.||.|+|||++.+.++
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 33568999999999999999998
No 395
>PF13245 AAA_19: Part of AAA domain
Probab=97.39 E-value=0.00034 Score=50.32 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=17.1
Q ss_pred eEEEEcCCCchHH-HHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKT-LLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT-~la~~ia~~l 113 (343)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566999999999 5566666555
No 396
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.37 E-value=0.0048 Score=55.86 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
.++..++|.||+|+||||++..+|..+ +..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445678889999999999999998766 4455555443
No 397
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.36 E-value=0.0002 Score=60.87 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=25.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
-++|.||||+||||+++.++..++...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 57899999999999999999998865443
No 398
>PLN02200 adenylate kinase family protein
Probab=97.36 E-value=0.00024 Score=62.89 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
..+..++|.|+||+||||+|+.+|..++.. .+++.++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 345678999999999999999999999865 45555554
No 399
>KOG0058|consensus
Probab=97.36 E-value=0.00076 Score=67.17 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
++|+..+-|.||+|+||||+|..+-+-+
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5788899999999999999999998755
No 400
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.35 E-value=0.00047 Score=61.62 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=27.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL 125 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l 125 (343)
|+|+|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999887 455666654333
No 401
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.35 E-value=0.00068 Score=67.73 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=61.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEc-CCccc-
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVL-PSSLT- 126 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~-~~~l~- 126 (343)
...+++++-.+...+.+.+.+.. +...+|++||+|+||||+..++...++. +++.+. +.++.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 45677877777777777776642 3345789999999999999888877742 333321 11111
Q ss_pred ----ccccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 127 ----SKHYG-ESEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 127 ----~~~~~-~~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
...+. .....+...++.+....|++|++.|+.
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11111 111236667777888899999999994
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.34 E-value=0.0015 Score=64.08 Aligned_cols=39 Identities=31% Similarity=0.237 Sum_probs=29.6
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~ 122 (343)
+++.++..+|+.||||||||+++..++.+ .+.+.++++.
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45577888999999999999999998543 2556555543
No 403
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.34 E-value=0.00035 Score=64.47 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEc-CCccccc---c---------ccchHHHHHHHHHHHHHcCCcE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVL-PSSLTSK---H---------YGESEKLVRALFETARARAPAV 151 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~-~~~l~~~---~---------~~~~~~~i~~~~~~a~~~~p~i 151 (343)
....++++.||+|+||||++++++..+.. ..+.+. ..++... . .+...-....++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 56679999999999999999999977632 222221 1111100 0 0111223566777788889999
Q ss_pred EEEcccc
Q psy7809 152 IFIDEVD 158 (343)
Q Consensus 152 l~iDeid 158 (343)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999994
No 404
>PRK14528 adenylate kinase; Provisional
Probab=97.34 E-value=0.00022 Score=60.75 Aligned_cols=31 Identities=29% Similarity=0.573 Sum_probs=26.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+++.||||+||||+++.++..++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999998776543
No 405
>PTZ00035 Rad51 protein; Provisional
Probab=97.34 E-value=0.0012 Score=61.50 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=23.5
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
+++....-+.|+||+|+|||+++..++..
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 34555666889999999999999998753
No 406
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.34 E-value=0.0018 Score=64.03 Aligned_cols=78 Identities=22% Similarity=0.143 Sum_probs=49.2
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc--------------------------c-----
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK--------------------------H----- 129 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~--------------------------~----- 129 (343)
++.++..+||+|+||+|||+++..++.+. +.+.++++..+-... +
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 34667789999999999999999886432 445555543221100 0
Q ss_pred ---c--cchHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 130 ---Y--GESEKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 130 ---~--~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
. ......+..+........|..++||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 0 01123344455555667889999999987654
No 407
>PRK06696 uridine kinase; Validated
Probab=97.34 E-value=0.00059 Score=59.94 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT 126 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~ 126 (343)
.+.-|.|.|++|+||||+|+.++..+ +.+++.++..++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 45568899999999999999999998 6667776665554
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.34 E-value=0.0046 Score=57.23 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
.+.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45678899999999999999999876 344444443
No 409
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.33 E-value=0.00075 Score=63.80 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
..+..+++.||.|||||++.+++...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 45578999999999999999999877743
No 410
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.32 E-value=0.00088 Score=61.95 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=47.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEE-cCCccccc------cccchHHHHHHHHHHHHHcCCcEEEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNV-LPSSLTSK------HYGESEKLVRALFETARARAPAVIFI 154 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v-~~~~l~~~------~~~~~~~~i~~~~~~a~~~~p~il~i 154 (343)
....++++.|++|+||||++++++... ...++.+ +..++... +.......+..++..+....|+.|++
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~Iiv 225 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILV 225 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 345789999999999999999999764 1223322 12222110 00011223677888888899999999
Q ss_pred cccc
Q psy7809 155 DEVD 158 (343)
Q Consensus 155 Deid 158 (343)
.|+-
T Consensus 226 GEiR 229 (319)
T PRK13894 226 GEVR 229 (319)
T ss_pred eccC
Confidence 9993
No 411
>PRK02496 adk adenylate kinase; Provisional
Probab=97.31 E-value=0.00023 Score=60.44 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.||||+|||++++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 478999999999999999999998766654
No 412
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.31 E-value=0.0024 Score=56.15 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=28.0
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
+++.++..+++.|+||+|||+++..++.+. +...++++
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 345677889999999999999999876432 44444444
No 413
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.31 E-value=0.00029 Score=65.69 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=48.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEc-CCccccc--------c----ccchHHHHHHHHHHHHHcCCc
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVL-PSSLTSK--------H----YGESEKLVRALFETARARAPA 150 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~-~~~l~~~--------~----~~~~~~~i~~~~~~a~~~~p~ 150 (343)
+....++++.||+|+||||++++++..+.. .++.+. ..++.-. + .+...-....++..+....|+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 356678999999999999999999987643 233221 1111100 0 011122356778888888999
Q ss_pred EEEEcccc
Q psy7809 151 VIFIDEVD 158 (343)
Q Consensus 151 il~iDeid 158 (343)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999993
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.31 E-value=0.0041 Score=52.91 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHH
Q psy7809 92 ILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia 110 (343)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 415
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.30 E-value=0.00022 Score=62.01 Aligned_cols=29 Identities=38% Similarity=0.721 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
++|.||||+||||+|+.+|..++...+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766554
No 416
>PRK04040 adenylate kinase; Provisional
Probab=97.30 E-value=0.00028 Score=60.21 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+..++|+|+|||||||+++.++..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999999983
No 417
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.30 E-value=0.00054 Score=58.89 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE 166 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~ 166 (343)
.....++|.|+-|+|||+.++.++.+.. .+. +... . .......+- .. -|+.|||++.+... +
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~~~-----~d~--~~~~--~-~kd~~~~l~----~~--~iveldEl~~~~k~--~ 111 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPEYF-----SDS--INDF--D-DKDFLEQLQ----GK--WIVELDELDGLSKK--D 111 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHHhc-----cCc--cccC--C-CcHHHHHHH----Hh--HheeHHHHhhcchh--h
Confidence 3345688999999999999999976621 111 1110 0 011111111 11 48999999887421 1
Q ss_pred hhhhHHHHHHHhhhcccC---CC---CCCCCCEEEEEecCCCCCC-CHHHhccc
Q psy7809 167 HEATRRVRCELLSHMDGV---GT---GSGDKGVLVLAATNHPWDL-DEALKRRF 213 (343)
Q Consensus 167 ~~~~~~~~~~ll~~l~~~---~~---~~~~~~v~vI~ttn~~~~l-~~~l~~rf 213 (343)
...+.+-+-...+.+ +. ...+...++|||||..+-| |+.--|||
T Consensus 112 ---~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf 162 (198)
T PF05272_consen 112 ---VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF 162 (198)
T ss_pred ---HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE
Confidence 112222222222211 11 1124467899999997754 33444454
No 418
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.29 E-value=0.0049 Score=55.38 Aligned_cols=101 Identities=23% Similarity=0.307 Sum_probs=59.0
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc--------------------------------cc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT--------------------------------SK 128 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~--------------------------------~~ 128 (343)
+++.....+|++|+||||||+++..++... |.+.++++..+-. ..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~ 97 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKG 97 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccccccc
Confidence 445777889999999999999999997554 4555555432110 00
Q ss_pred c----cc---chHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809 129 H----YG---ESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV 184 (343)
Q Consensus 129 ~----~~---~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~ 184 (343)
. .+ ........+...+....+.++++|.+-.+.-..............+...+...
T Consensus 98 ~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~~l~~~~~~~ 160 (260)
T COG0467 98 LVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKKL 160 (260)
T ss_pred cccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcCchHHHHHHHHHHHHHHHhC
Confidence 0 01 11223333444444455789999999865433233333356666666666543
No 419
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.29 E-value=0.00041 Score=48.88 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l 113 (343)
+.+.|++|+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 420
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.28 E-value=0.00022 Score=56.39 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l 113 (343)
|+|.|+||+||||+|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 421
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.28 E-value=0.00027 Score=61.70 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.|++.||||+||||+++.+|..++...+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 378999999999999999999998766553
No 422
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0025 Score=59.72 Aligned_cols=97 Identities=23% Similarity=0.299 Sum_probs=66.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccc------cc--------cchHHHHHHHHHHHHHcCC
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSK------HY--------GESEKLVRALFETARARAP 149 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~------~~--------~~~~~~i~~~~~~a~~~~p 149 (343)
+-++.-+||-|.||.|||||.-.++..+. ..+.|++..+-... .. --.+..+..++..+....|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 45556688889999999999998887763 36888876543321 11 1134567888888889999
Q ss_pred cEEEEcccccccCCC-----CchhhhHHHHHHHhhhcc
Q psy7809 150 AVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMD 182 (343)
Q Consensus 150 ~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~ 182 (343)
.+++||-|..+.... ..-...+.....|++.-.
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999987632 222334555666665543
No 423
>PRK14527 adenylate kinase; Provisional
Probab=97.27 E-value=0.00026 Score=60.59 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
..+.-+++.||||+||||+++.+|..++...+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 345679999999999999999999999865443
No 424
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.26 E-value=0.00099 Score=62.62 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC------CceEEE-cCCcccccc------------ccchHHHHHHHHHHHHHcC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG------STFFNV-LPSSLTSKH------------YGESEKLVRALFETARARA 148 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~------~~~~~v-~~~~l~~~~------------~~~~~~~i~~~~~~a~~~~ 148 (343)
+...++++||+|+||||++++++..+. ..++.+ ++.++.... ++.....+...+..+....
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 445689999999999999999998762 223322 111211100 1111123455566677789
Q ss_pred CcEEEEcccc
Q psy7809 149 PAVIFIDEVD 158 (343)
Q Consensus 149 p~il~iDeid 158 (343)
|.++++.|+.
T Consensus 213 Pd~i~vGEiR 222 (358)
T TIGR02524 213 PHAILVGEAR 222 (358)
T ss_pred CCEEeeeeeC
Confidence 9999999984
No 425
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.25 E-value=0.00029 Score=69.00 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=63.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh--CCceEEEcCCcccccc-----ccchHHH--------HHHHHHHHHHcCCcEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH--GSTFFNVLPSSLTSKH-----YGESEKL--------VRALFETARARAPAVIF 153 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l--~~~~~~v~~~~l~~~~-----~~~~~~~--------i~~~~~~a~~~~p~il~ 153 (343)
...+++.|.+||||-.++|++=... ..+|+.++|.-+.... +|..... ....+..+. ...||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccH
Confidence 3479999999999999999995544 5689999996654321 1111111 111222221 24899
Q ss_pred EcccccccCCCCchhhhHHHHHHHhhhcccC-----CCCCCCCCEEEEEecCCC
Q psy7809 154 IDEVDAFCSGSREHEATRRVRCELLSHMDGV-----GTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 154 iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~~~v~vI~ttn~~ 202 (343)
+|||..| .-.++..|+..+..- ......-.|-||++|+.+
T Consensus 413 ldeIgd~---------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d 457 (606)
T COG3284 413 LDEIGDM---------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD 457 (606)
T ss_pred HHHhhhc---------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC
Confidence 9999766 456777788777631 111112257788888864
No 426
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.23 E-value=0.0015 Score=60.94 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=29.4
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS 124 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~ 124 (343)
+++....-+.++|+||+|||.++..+|... +...++++..+
T Consensus 118 GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 118 GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 345566678899999999999999887432 12567776544
No 427
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.0014 Score=61.39 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.+...+|.||+|||||+|++.+++.+.
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 334689999999999999999998763
No 428
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00024 Score=58.60 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=26.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.++++|.||+||||+++.++ +++...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8898877664
No 429
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.22 E-value=0.00046 Score=55.21 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=26.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.+...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455678999999999999999999999854
No 430
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00036 Score=58.99 Aligned_cols=26 Identities=50% Similarity=0.878 Sum_probs=22.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.++|.||||+||||+|+.+|+.++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999995543
No 431
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.21 E-value=0.0048 Score=53.14 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.5
Q ss_pred ceEEEEcCCCchHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia 110 (343)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999998
No 432
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.21 E-value=0.0013 Score=56.65 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=43.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCccccccccc------------------hHHHHHHHHHHHHHc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSSLTSKHYGE------------------SEKLVRALFETARAR 147 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~l~~~~~~~------------------~~~~i~~~~~~a~~~ 147 (343)
..|.-+++.|+||+|||+++..+...+ +..++.++..++......- .......++..+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 456778999999999999999999988 7788888887766443210 112344556666666
Q ss_pred CCcEEEEcc
Q psy7809 148 APAVIFIDE 156 (343)
Q Consensus 148 ~p~il~iDe 156 (343)
...|++ |.
T Consensus 93 ~~nii~-E~ 100 (199)
T PF06414_consen 93 RYNIIF-EG 100 (199)
T ss_dssp T--EEE-E-
T ss_pred CCCEEE-ec
Confidence 665654 44
No 433
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.20 E-value=0.0021 Score=54.27 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 566779999999999999999999764
No 434
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.20 E-value=0.0012 Score=68.16 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=53.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc----cchHHHHHHHHHH-HH----HcCCcEEEEccc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY----GESEKLVRALFET-AR----ARAPAVIFIDEV 157 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~----~~~~~~i~~~~~~-a~----~~~p~il~iDei 157 (343)
.-++|.|++|||||++++++...+ +..++.+.+........ +.....+..+... .. .....+|++||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457899999999999999997544 55666554433221111 1111122332111 10 123469999999
Q ss_pred ccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 158 DAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
-.+ ....+..|+...... ..++++||=...
T Consensus 449 sMv---------~~~~~~~Ll~~~~~~-----~~kliLVGD~~Q 478 (744)
T TIGR02768 449 GMV---------GSRQMARVLKEAEEA-----GAKVVLVGDPEQ 478 (744)
T ss_pred ccC---------CHHHHHHHHHHHHhc-----CCEEEEECChHH
Confidence 655 223344555533221 235777774443
No 435
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.20 E-value=0.0014 Score=67.43 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=56.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---C--CceEEEcCCccccc----cccchHHHHHHHHHHH----------HHcCCc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---G--STFFNVLPSSLTSK----HYGESEKLVRALFETA----------RARAPA 150 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~--~~~~~v~~~~l~~~----~~~~~~~~i~~~~~~a----------~~~~p~ 150 (343)
+.++|.|+||||||++++++...+ + ..++-+.+..-... ..|.....++.++... ......
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468899999999999999997654 3 33333332211111 1111112233333211 012346
Q ss_pred EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809 151 VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205 (343)
Q Consensus 151 il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l 205 (343)
+|++||+..+ ...++..|+..+. . ..+++++|=.+....+
T Consensus 419 llIvDEaSMv---------d~~~~~~Ll~~~~---~---~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 419 LLIVDESSMM---------DTWLALSLLAALP---D---HARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEEeccccC---------CHHHHHHHHHhCC---C---CCEEEEECccccccCC
Confidence 9999999655 3345566666442 1 3367888866655444
No 436
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.20 E-value=0.00082 Score=60.66 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=35.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc---cc-ccchHHHHHH----HHHHHHHcCCcEEEEcccccc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS---KH-YGESEKLVRA----LFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~---~~-~~~~~~~i~~----~~~~a~~~~p~il~iDeid~l 160 (343)
|+|+|-||+|||++|+.|+..+ +..+..++-..+.. .| ....++.++. .+..+... ..|+++|+..++
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999998765 45666666443331 11 1222333333 33333332 379999999776
No 437
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.0022 Score=53.73 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||+|.+.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 566779999999999999999999765
No 438
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.19 E-value=0.0012 Score=56.40 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=43.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC-------------CceEEEcCCccc-----------cccc--------c---
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG-------------STFFNVLPSSLT-----------SKHY--------G--- 131 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~-------------~~~~~v~~~~l~-----------~~~~--------~--- 131 (343)
....-++|+||+|+|||+++..++..+- ..+.+++...-. ..+. .
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccc
Confidence 4455689999999999999999876541 245566442211 0000 0
Q ss_pred --------------chHHHHHHHHHHHHH-cCCcEEEEcccccccCC
Q psy7809 132 --------------ESEKLVRALFETARA-RAPAVIFIDEVDAFCSG 163 (343)
Q Consensus 132 --------------~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~ 163 (343)
.....+..+.+.+.. ..+.+|+||.+..+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234455555555 56899999999999875
No 439
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.18 E-value=0.00029 Score=57.83 Aligned_cols=31 Identities=35% Similarity=0.606 Sum_probs=24.6
Q ss_pred EEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 94 LFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 94 l~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
|.||||+|||++|+.+|.+++... +++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHH
Confidence 579999999999999999998654 4444443
No 440
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.18 E-value=0.0006 Score=62.96 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=32.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+.+...++|.|++|||||++++.+|..++.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 467778999999999999999999999999998554
No 441
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0077 Score=56.58 Aligned_cols=60 Identities=27% Similarity=0.235 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
.+.+...+.+.+......+..+. ..++..++|.||+|+||||++..+|..+ +..+..+++
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45566666666654333222111 2456778999999999999999998765 444444444
No 442
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.17 E-value=0.0011 Score=57.08 Aligned_cols=23 Identities=48% Similarity=0.653 Sum_probs=18.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
-+++.||.|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998665
No 443
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.17 E-value=0.0032 Score=60.26 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc---------------ccc-----cchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS---------------KHY-----GESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~---------------~~~-----~~~~~~i~~~~~~a 144 (343)
++..++|+|++|+||||++..+|..+ |..+..+++..... .+. ..........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998776 55666665533210 000 01122233445555
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
......+||||=...+
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5555689999988544
No 444
>PF13479 AAA_24: AAA domain
Probab=97.17 E-value=0.00093 Score=58.24 Aligned_cols=67 Identities=22% Similarity=0.222 Sum_probs=38.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc--c--c----ccc-cchHHHHHHHHHHH--HHcCCcEEEEccc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL--T--S----KHY-GESEKLVRALFETA--RARAPAVIFIDEV 157 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l--~--~----~~~-~~~~~~i~~~~~~a--~~~~p~il~iDei 157 (343)
+..++|||+||+|||++|..+ + ..+.+++..= . . ..+ -.+-..+.+.+..+ .......|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 457899999999999999988 2 2233332111 0 0 000 01222344444333 2234569999999
Q ss_pred ccc
Q psy7809 158 DAF 160 (343)
Q Consensus 158 d~l 160 (343)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 876
No 445
>PLN02674 adenylate kinase
Probab=97.16 E-value=0.00087 Score=59.41 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
+...++|.||||+||+|+++.+|..++... +++.++.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 346799999999999999999999998654 4444444
No 446
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.16 E-value=0.0015 Score=60.43 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=44.8
Q ss_pred CC-cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-ceEEE
Q psy7809 55 WD-DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-TFFNV 120 (343)
Q Consensus 55 ~~-~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~v 120 (343)
|+ ++.|+++.++++.+++.... .++...-+-++|.||+|+|||++++.+.+-+.. +++.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA------~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAA------QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHH------hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 44 89999999999999886432 122234456889999999999999999887753 44444
No 447
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.15 E-value=0.0018 Score=54.84 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566678999999999999999999765
No 448
>PRK10867 signal recognition particle protein; Provisional
Probab=97.14 E-value=0.004 Score=59.87 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc----------------c----ccchHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK----------------H----YGESEKLVRALFE 142 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~----------------~----~~~~~~~i~~~~~ 142 (343)
.+|..++++|++|+||||++..+|..+ +..+..+++...... + .............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346778999999999999888887654 555666655422210 0 0112333444555
Q ss_pred HHHHcCCcEEEEcccccc
Q psy7809 143 TARARAPAVIFIDEVDAF 160 (343)
Q Consensus 143 ~a~~~~p~il~iDeid~l 160 (343)
.+......+|+||-...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566666789999988655
No 449
>PRK04182 cytidylate kinase; Provisional
Probab=97.14 E-value=0.00044 Score=58.20 Aligned_cols=29 Identities=38% Similarity=0.625 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.|+|.|++|||||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999987665
No 450
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.13 E-value=0.0029 Score=62.56 Aligned_cols=28 Identities=39% Similarity=0.606 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
+.++..+++.||+|||||+|.|++|...
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4677889999999999999999999653
No 451
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.13 E-value=0.0031 Score=56.85 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=55.9
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHH
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKL 136 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~ 136 (343)
+++--+++.+.+.+....- ..+..++||.|..|+||++++|..|...+..++.+....- -...+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~--y~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKG--YSIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHH----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTT--THHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHH----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCC--cCHHHHHHH
Confidence 4555566666655544321 1455789999999999999999999999999888865431 112223445
Q ss_pred HHHHHHHHH-HcCCcEEEEccccc
Q psy7809 137 VRALFETAR-ARAPAVIFIDEVDA 159 (343)
Q Consensus 137 i~~~~~~a~-~~~p~il~iDeid~ 159 (343)
++.++..|- ...|.+++|+|-+-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHhccCCCeEEEecCccc
Confidence 666666554 44578888887643
No 452
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.13 E-value=0.0016 Score=60.25 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=29.7
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh------C---CceEEEcCCc
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH------G---STFFNVLPSS 124 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l------~---~~~~~v~~~~ 124 (343)
+++.+..-+.++||||+|||+++..+|... + ...++++..+
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 345666778899999999999999987522 1 2456666544
No 453
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.12 E-value=0.0074 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
+.-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999873
No 454
>PRK01184 hypothetical protein; Provisional
Probab=97.12 E-value=0.00046 Score=58.59 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
-++|+|+||+||||+++ ++.+++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999998 788888877654
No 455
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.11 E-value=0.0037 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
++..++.||.|+|||++.++++-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998643
No 456
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0039 Score=60.01 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=26.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSS 124 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~ 124 (343)
+..++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578899999999999999887654 24555555544
No 457
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.10 E-value=0.0018 Score=68.11 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=58.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCcccccc----ccchHHHHHHHHHHHH-----HcCCcEEEEccc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTSKH----YGESEKLVRALFETAR-----ARAPAVIFIDEV 157 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l~~~~----~~~~~~~i~~~~~~a~-----~~~p~il~iDei 157 (343)
.-++|.|++||||||+.+++... .|..++-+-+....... .|.....+..++.... .....||||||+
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEA 442 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEA 442 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECc
Confidence 35679999999999998877543 36666665544332221 1222333444432110 123459999999
Q ss_pred ccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809 158 DAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205 (343)
Q Consensus 158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l 205 (343)
-.+ ....+..|+...... ..++++||=......+
T Consensus 443 SMv---------~~~~m~~LL~~a~~~-----garvVLVGD~~QLpsV 476 (988)
T PRK13889 443 GMV---------GTRQLERVLSHAADA-----GAKVVLVGDPQQLQAI 476 (988)
T ss_pred ccC---------CHHHHHHHHHhhhhC-----CCEEEEECCHHHcCCC
Confidence 655 334555666544322 2368888866655444
No 458
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.10 E-value=0.0039 Score=52.36 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||+|++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 455678999999999999999999765
No 459
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.10 E-value=0.0024 Score=57.27 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=64.4
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCcccc-c--------c----------------
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTS-K--------H---------------- 129 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~-~--------~---------------- 129 (343)
+++....-.=|+||||+|||.++-.+|-.. +..+++++...-.. . +
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~ 112 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV 112 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence 334444456699999999999999887543 33477776543211 0 0
Q ss_pred --ccchHHHHHHHHHHHHHcCCcEEEEcccccccCC----CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 130 --YGESEKLVRALFETARARAPAVIFIDEVDAFCSG----SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 130 --~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
..+....+..+..........+|+||-|-.++.. ..+.......+..++..|..+.... ++.||.|..-..
T Consensus 113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~---~iaVvvTNqv~~ 189 (256)
T PF08423_consen 113 FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKY---NIAVVVTNQVTT 189 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHT---T-EEEEEEEECS
T ss_pred CCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhC---CceEEeeceeee
Confidence 0111122333333333445679999999988752 1122223455556655555443322 566666654333
Q ss_pred CC
Q psy7809 204 DL 205 (343)
Q Consensus 204 ~l 205 (343)
..
T Consensus 190 ~~ 191 (256)
T PF08423_consen 190 KI 191 (256)
T ss_dssp ST
T ss_pred cC
Confidence 33
No 460
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0056 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
....++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999986
No 461
>PTZ00202 tuzin; Provisional
Probab=97.09 E-value=0.0052 Score=58.54 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=49.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
+....+++|.+....+|...+..... ..+.-+.|.|++|||||++++.+...++...+.++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---------~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---------AHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---------CCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34467899999999999988853211 2345678999999999999999999988777777664
No 462
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.00058 Score=57.55 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++..++|.|++|+||||+++.++..+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999999885
No 463
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.08 E-value=0.00079 Score=58.85 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=17.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
-.++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 37899999999998777777665
No 464
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0033 Score=60.76 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=41.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC--------CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG--------STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEV 157 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~--------~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDei 157 (343)
+||..+-+.||||||||||.+.+.+++. .|+-.++... ..-.+-+....+...++.|+-..-.+|+||--
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~-RRiTflEcp~Dl~~miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKT-RRITFLECPSDLHQMIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecce-eEEEEEeChHHHHHHHhHHHhhheeEEEeccc
Confidence 5556677999999999999999987653 2222222211 11112233455777777776654446666643
No 465
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.07 E-value=0.00055 Score=58.30 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=24.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
..++|.||+|+|||||++.++..++..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999988776543
No 466
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.06 E-value=0.00057 Score=57.02 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
-|.|+|++|+|||++|+.++..++.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999998876543
No 467
>PRK08233 hypothetical protein; Provisional
Probab=97.06 E-value=0.0007 Score=57.12 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=25.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC-CceEEEcC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG-STFFNVLP 122 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~-~~~~~v~~ 122 (343)
.-|.|.|+||+||||+|+.++..++ ..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3577889999999999999999985 44444443
No 468
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.05 E-value=0.0053 Score=51.20 Aligned_cols=27 Identities=41% Similarity=0.671 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 566678999999999999999999765
No 469
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0066 Score=59.37 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+..+.|.||+|+||||++..+|..+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678899999999999999998754
No 470
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.05 E-value=0.0043 Score=61.43 Aligned_cols=78 Identities=23% Similarity=0.175 Sum_probs=50.4
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------------ccc--cch
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------------KHY--GES 133 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------------~~~--~~~ 133 (343)
++..+..++|+|+||+|||+++..++.+. +...++++..+-.. .+. ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 45667789999999999999999987653 55666654322110 000 011
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 134 EKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 134 ~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
...+..+........+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23344455555667789999999988754
No 471
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.05 E-value=0.00059 Score=56.74 Aligned_cols=26 Identities=42% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
|.|+|++|||||||++.++.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999988 77655
No 472
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.04 E-value=0.006 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
-+.+|+++|.|||++|-.+|-+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999987654
No 473
>PRK14526 adenylate kinase; Provisional
Probab=97.03 E-value=0.00068 Score=58.93 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=25.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.++|.||||+||||+++.+|..++...+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 47899999999999999999998865543
No 474
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0044 Score=52.03 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 556678999999999999999999764
No 475
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.01 E-value=0.0007 Score=62.16 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=24.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh-CCceE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH-GSTFF 118 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l-~~~~~ 118 (343)
.-+++.|+|||||||+|+.++.++ +..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 357889999999999999999998 54443
No 476
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0034 Score=52.17 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=33.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT 126 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~ 126 (343)
+.+..+.|+|.+|+||||+|.++...| |.+++.++...+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 455678899999999999999999876 7889999876654
No 477
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.00 E-value=0.0017 Score=69.21 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=30.6
Q ss_pred CCCCceEEEEcCCCchHHHH-HHHHHHHhCCceEEEcCCc
Q psy7809 86 LRPWRGILLFGPPGTGKTLL-AKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~l-a~~ia~~l~~~~~~v~~~~ 124 (343)
....++++++||||+|||++ +-++-.++-..++.++.+.
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~ 1530 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFST 1530 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecc
Confidence 45668999999999999995 5567777777787776543
No 478
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.99 E-value=0.0052 Score=52.64 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||+|.+.++..+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566789999999999999999999876
No 479
>PLN02199 shikimate kinase
Probab=96.99 E-value=0.00086 Score=60.69 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
...+|+|.|.+|+|||++++.+|+.++++|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 4568999999999999999999999999988765
No 480
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.98 E-value=0.021 Score=58.18 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh--CCceEEEcCCccccc--------------c----------------ccchHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH--GSTFFNVLPSSLTSK--------------H----------------YGESEK 135 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l--~~~~~~v~~~~l~~~--------------~----------------~~~~~~ 135 (343)
..+-++|.-|.|.||||++-.++... +..+..+++.+--+. + ......
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 34568999999999999999998633 333333333221110 0 011122
Q ss_pred HHHHHHHHH-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 136 LVRALFETA-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 136 ~i~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
.+..+|... ....|..|+|||.+.+- +......+..|++.. +.++.+|.+|...
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~-----~~~l~~~l~fLl~~~--------P~~l~lvv~SR~r 170 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLIS-----DPALHEALRFLLKHA--------PENLTLVVTSRSR 170 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccC-----cccHHHHHHHHHHhC--------CCCeEEEEEeccC
Confidence 455555543 44578999999999883 334445555666554 4467777666543
No 481
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.97 E-value=0.0016 Score=60.53 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=28.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
...+.|.|++|+|||||++.++..++.+++.-.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~ 194 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEY 194 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeeh
Confidence 357899999999999999999999988775443
No 482
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.97 E-value=0.032 Score=52.99 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCchHHHHH--HHHHHHhCCceEEEcCCccc
Q psy7809 88 PWRGILLFGPPGTGKTLLA--KAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la--~~ia~~l~~~~~~v~~~~l~ 126 (343)
+..-|++.||.||||+.|+ +++.. ..++.+++|..+.
T Consensus 16 ~~TFIvV~GPrGSGK~elV~d~~L~~--r~~vL~IDC~~i~ 54 (431)
T PF10443_consen 16 PNTFIVVQGPRGSGKRELVMDHVLKD--RKNVLVIDCDQIV 54 (431)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHhC--CCCEEEEEChHhh
Confidence 4456888999999999999 44443 3347777776554
No 483
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.96 E-value=0.0026 Score=63.92 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.-.+|.|+|||||||+++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 468899999999999998886554
No 484
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.0013 Score=55.37 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
++..+.|.|+||+|||++++.++..+ +..+..++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 45678899999999999999999887 3345556554
No 485
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.96 E-value=0.001 Score=62.65 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=21.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 486
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.96 E-value=0.0021 Score=64.39 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.-++|.|+||||||+++..+...+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999998886554
No 487
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.94 E-value=0.0014 Score=56.85 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC-CceEEEcCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG-STFFNVLPSS 124 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~-~~~~~v~~~~ 124 (343)
..+.-|.|.|++|||||||++.++..++ ..+..++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 3456788999999999999999999984 3344444433
No 488
>PRK12338 hypothetical protein; Provisional
Probab=96.94 E-value=0.00098 Score=61.17 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
.|.-+++.|+||+||||+|+.+|..++...+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4567899999999999999999999987543
No 489
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.94 E-value=0.00054 Score=64.57 Aligned_cols=45 Identities=33% Similarity=0.519 Sum_probs=36.5
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.+++|..-.+.++++|.+ ...|+|+.||||.||||+|+++|.-+.
T Consensus 244 ~~ledY~L~dkl~eRL~e-----------------raeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 244 LSLEDYGLSDKLKERLEE-----------------RAEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred echhhcCCCHHHHHHHHh-----------------hhcceEEecCCCCChhHHHHHHHHHHH
Confidence 556776667788888774 336899999999999999999997663
No 490
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.93 E-value=0.001 Score=56.94 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=27.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
-++|+||+|||||.+|-++|+.++.+++..+.-....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 3689999999999999999999999999987654443
No 491
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.91 E-value=0.0018 Score=61.78 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=26.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
..|.|.|++|||||||++++|..++...+
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 56999999999999999999999887644
No 492
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.91 E-value=0.0012 Score=56.72 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTF 117 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~ 117 (343)
+.-+++.|+||+|||++++.+|.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34688999999999999999999988654
No 493
>PRK14529 adenylate kinase; Provisional
Probab=96.91 E-value=0.00085 Score=58.70 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=25.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
.++|.||||+||||+++.++..++.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4789999999999999999999987654
No 494
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.90 E-value=0.0026 Score=52.26 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=39.5
Q ss_pred EcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 95 FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 95 ~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
.+..||||||++.++++.++- +-.+.-.++.++ ...+.+..+...+......++|.|-=.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNN 64 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNN 64 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 478999999999999999883 223443444433 344556666666644444688888543
No 495
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.90 E-value=0.0062 Score=52.20 Aligned_cols=117 Identities=24% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc----------------------------------CCccccc
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL----------------------------------PSSLTSK 128 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~----------------------------------~~~l~~~ 128 (343)
++.+.-+++.|+.|+|||.|.+.++.=+ +..+.+++ ...+. .
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~-~ 103 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN-W 103 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc-c
Confidence 4555568899999999999999998532 22222221 11110 0
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA 208 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~ 208 (343)
........++.+....+.....|++||-+..++... +......++..+..+... +-+||.| -+|+.+++.
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----~~~~vl~fm~~~r~l~d~----gKvIilT-vhp~~l~e~ 173 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----SEDAVLNFMTFLRKLSDL----GKVIILT-VHPSALDED 173 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----cHHHHHHHHHHHHHHHhC----CCEEEEE-eChhhcCHH
Confidence 112234456666666666667899999998876422 222333445555544432 2244444 456778877
Q ss_pred Hhccc
Q psy7809 209 LKRRF 213 (343)
Q Consensus 209 l~~rf 213 (343)
+..|+
T Consensus 174 ~~~ri 178 (235)
T COG2874 174 VLTRI 178 (235)
T ss_pred HHHHH
Confidence 76654
No 496
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.89 E-value=0.0011 Score=54.48 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=30.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS 127 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~ 127 (343)
..|.|+|.||+||||||+++...+ +.+++.++...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 457899999999999999999876 67788887655543
No 497
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.89 E-value=0.0075 Score=53.50 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~ 112 (343)
.+|+||+|+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 498
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.89 E-value=0.0098 Score=57.18 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc----------------c---ccc-hHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK----------------H---YGE-SEKLVRALFET 143 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~----------------~---~~~-~~~~i~~~~~~ 143 (343)
+|..+++.|++|+||||++..+|..+ +..+..+++...... + .+. ........+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 46779999999999999998888764 455666665432210 0 001 12333455555
Q ss_pred HHHcCCcEEEEcccccc
Q psy7809 144 ARARAPAVIFIDEVDAF 160 (343)
Q Consensus 144 a~~~~p~il~iDeid~l 160 (343)
+......+|++|-...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65666789999988554
No 499
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.85 E-value=0.0058 Score=56.28 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCccccc----------------cccchHHHHHHHHHHHHHc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTSK----------------HYGESEKLVRALFETARAR 147 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~a~~~ 147 (343)
+..+-+-++||+|+|||+|+-.+..+ .+.....+++..-... .+...+..+..+-...+..
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg 130 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSG 130 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcc
Confidence 44455779999999999998877543 4566666665332211 1222333443333334444
Q ss_pred CCcEEEEcccccccCC--------CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809 148 APAVIFIDEVDAFCSG--------SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204 (343)
Q Consensus 148 ~p~il~iDeid~l~~~--------~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~ 204 (343)
..+++++|-+..+.+. ...-....+++..+++.+...-... ++.+|++..-.+.
T Consensus 131 ~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~---~~~~i~INQ~R~~ 192 (322)
T PF00154_consen 131 AVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKS---NTTLIFINQVRDK 192 (322)
T ss_dssp SESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTT---T-EEEEEEEESSS
T ss_pred cccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhh---ceEEEEeehHHHH
Confidence 5579999999999861 1122345567777777665443322 5667666544433
No 500
>PLN02459 probable adenylate kinase
Probab=96.85 E-value=0.0013 Score=58.73 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
..++|.||||+||+|+++.+|..++...+.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 358889999999999999999999865444
Done!