Query psy7809
Match_columns 343
No_of_seqs 269 out of 3109
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 19:21:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3E-48 1E-52 362.5 20.2 256 41-336 133-404 (405)
2 4b4t_H 26S protease regulatory 100.0 4.6E-46 1.6E-50 351.7 21.3 251 47-337 200-467 (467)
3 4b4t_I 26S protease regulatory 100.0 1.8E-46 6.2E-51 351.3 16.6 244 46-329 172-431 (437)
4 4b4t_L 26S protease subunit RP 100.0 8.6E-46 2.9E-50 351.2 20.1 253 42-334 167-435 (437)
5 4b4t_M 26S protease regulatory 100.0 2.5E-45 8.4E-50 347.7 21.1 241 46-326 171-427 (434)
6 3cf2_A TER ATPase, transitiona 100.0 1E-46 3.5E-51 380.4 10.4 282 45-342 466-764 (806)
7 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.8E-44 3E-48 328.8 27.6 289 46-343 2-321 (322)
8 4b4t_K 26S protease regulatory 100.0 4.5E-45 1.5E-49 345.7 18.4 246 46-331 162-425 (428)
9 2zan_A Vacuolar protein sortin 100.0 3.9E-43 1.3E-47 337.9 22.6 308 27-343 105-443 (444)
10 2qp9_X Vacuolar protein sortin 100.0 7.2E-43 2.5E-47 326.9 23.6 300 35-343 30-353 (355)
11 3eie_A Vacuolar protein sortin 100.0 7.8E-43 2.7E-47 322.8 22.6 290 45-343 7-320 (322)
12 3cf0_A Transitional endoplasmi 100.0 4.9E-40 1.7E-44 301.2 21.5 283 44-341 3-301 (301)
13 3cf2_A TER ATPase, transitiona 100.0 5E-40 1.7E-44 331.7 14.9 254 48-324 196-462 (806)
14 3vfd_A Spastin; ATPase, microt 100.0 7.7E-39 2.6E-43 303.4 22.1 292 25-342 84-386 (389)
15 3d8b_A Fidgetin-like protein 1 100.0 2.2E-38 7.6E-43 296.8 21.9 288 30-343 58-356 (357)
16 3b9p_A CG5977-PA, isoform A; A 100.0 3.6E-38 1.2E-42 288.0 21.5 281 37-342 2-293 (297)
17 2x8a_A Nuclear valosin-contain 100.0 3.3E-36 1.1E-40 271.7 20.8 253 49-330 3-273 (274)
18 3h4m_A Proteasome-activating n 100.0 4.7E-34 1.6E-38 259.1 20.9 256 47-342 8-281 (285)
19 3hu3_A Transitional endoplasmi 100.0 9.6E-34 3.3E-38 274.4 16.1 251 51-324 199-462 (489)
20 1ypw_A Transitional endoplasmi 100.0 1.2E-35 4.2E-40 304.0 -1.6 281 46-341 467-763 (806)
21 2ce7_A Cell division protein F 100.0 6.7E-32 2.3E-36 259.6 21.9 233 50-323 10-258 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 1.4E-31 4.7E-36 239.4 21.4 236 47-323 3-254 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.9E-31 1.3E-35 236.7 16.6 233 51-324 1-252 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 3.1E-30 1.1E-34 249.3 15.9 235 49-324 24-274 (499)
25 1ixz_A ATP-dependent metallopr 100.0 1.2E-29 4.1E-34 226.4 17.3 219 45-267 5-239 (254)
26 2r62_A Cell division protease 100.0 1.8E-31 6E-36 240.1 2.7 241 48-328 3-260 (268)
27 1iy2_A ATP-dependent metallopr 100.0 2.8E-28 9.6E-33 220.5 20.3 219 45-267 29-263 (278)
28 1ypw_A Transitional endoplasmi 99.9 8E-27 2.7E-31 238.8 15.6 218 49-269 197-427 (806)
29 3t15_A Ribulose bisphosphate c 99.9 6.3E-26 2.1E-30 206.6 9.1 183 86-272 33-242 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 1.6E-23 5.5E-28 202.1 1.6 192 50-259 31-262 (456)
31 3syl_A Protein CBBX; photosynt 99.8 9.5E-21 3.3E-25 173.2 14.3 205 57-270 32-268 (309)
32 3uk6_A RUVB-like 2; hexameric 99.8 3.2E-20 1.1E-24 173.8 16.2 214 51-322 39-331 (368)
33 3pfi_A Holliday junction ATP-d 99.8 6.1E-19 2.1E-23 163.3 16.4 196 45-265 18-235 (338)
34 1ofh_A ATP-dependent HSL prote 99.8 3.6E-19 1.2E-23 162.5 13.6 236 56-322 15-300 (310)
35 1d2n_A N-ethylmaleimide-sensit 99.8 5.7E-19 1.9E-23 158.7 14.1 172 87-261 62-246 (272)
36 3m6a_A ATP-dependent protease 99.8 5.7E-19 1.9E-23 173.5 14.1 202 56-270 81-321 (543)
37 1hqc_A RUVB; extended AAA-ATPa 99.8 5E-18 1.7E-22 156.1 15.9 192 49-264 5-218 (324)
38 3pvs_A Replication-associated 99.8 4.8E-18 1.6E-22 162.8 13.4 184 44-263 14-221 (447)
39 1g41_A Heat shock protein HSLU 99.7 2E-17 6.7E-22 157.0 16.4 245 56-334 15-443 (444)
40 2chg_A Replication factor C sm 99.7 1.6E-17 5.6E-22 143.4 13.1 183 46-262 7-209 (226)
41 2z4s_A Chromosomal replication 99.7 1.7E-17 5.8E-22 159.1 14.0 194 50-265 99-314 (440)
42 3hws_A ATP-dependent CLP prote 99.7 7.4E-18 2.5E-22 157.8 10.9 212 57-268 16-326 (363)
43 1r6b_X CLPA protein; AAA+, N-t 99.7 6.1E-17 2.1E-21 165.5 17.8 243 44-339 174-455 (758)
44 2v1u_A Cell division control p 99.7 1.5E-16 5.1E-21 149.3 18.9 196 54-265 17-257 (387)
45 1njg_A DNA polymerase III subu 99.7 2.2E-17 7.4E-22 144.4 10.5 191 45-261 12-232 (250)
46 3u61_B DNA polymerase accessor 99.7 6.3E-17 2.2E-21 148.9 13.2 183 45-260 15-219 (324)
47 1l8q_A Chromosomal replication 99.7 2.6E-16 8.9E-21 144.9 17.3 191 50-263 5-214 (324)
48 1sxj_D Activator 1 41 kDa subu 99.7 2.4E-16 8.3E-21 146.3 15.6 187 44-263 25-241 (353)
49 3bos_A Putative DNA replicatio 99.7 3.3E-16 1.1E-20 137.2 15.5 181 52-265 24-225 (242)
50 2p65_A Hypothetical protein PF 99.7 2E-17 6.8E-22 139.1 7.2 151 46-215 12-180 (187)
51 3pxg_A Negative regulator of g 99.7 1.1E-16 3.8E-21 154.6 12.9 192 38-265 162-386 (468)
52 1jbk_A CLPB protein; beta barr 99.7 3.6E-17 1.2E-21 137.9 8.2 152 43-214 9-178 (195)
53 1um8_A ATP-dependent CLP prote 99.7 1.4E-16 4.8E-21 149.8 12.7 127 57-183 22-177 (376)
54 3te6_A Regulatory protein SIR3 99.7 2.1E-16 7.3E-21 144.1 12.1 193 58-272 22-294 (318)
55 2qby_B CDC6 homolog 3, cell di 99.7 6.7E-16 2.3E-20 145.0 15.0 186 56-265 20-253 (384)
56 1in4_A RUVB, holliday junction 99.7 8E-15 2.7E-19 135.6 22.0 196 46-266 15-232 (334)
57 1fnn_A CDC6P, cell division co 99.7 5E-15 1.7E-19 139.1 20.5 194 54-266 15-256 (389)
58 1g8p_A Magnesium-chelatase 38 99.7 7.9E-16 2.7E-20 142.8 14.1 195 50-266 18-304 (350)
59 2chq_A Replication factor C sm 99.7 7.6E-16 2.6E-20 140.8 13.8 187 45-260 6-207 (319)
60 1jr3_A DNA polymerase III subu 99.7 5.8E-16 2E-20 144.8 13.3 185 46-262 6-226 (373)
61 4fcw_A Chaperone protein CLPB; 99.7 6E-16 2.1E-20 141.3 12.9 201 56-270 17-284 (311)
62 1qvr_A CLPB protein; coiled co 99.6 5.1E-16 1.8E-20 160.4 13.0 208 37-265 151-393 (854)
63 3pxi_A Negative regulator of g 99.6 4.3E-16 1.5E-20 159.2 12.1 192 38-265 162-386 (758)
64 1iqp_A RFCS; clamp loader, ext 99.6 4E-15 1.4E-19 136.5 16.7 189 44-261 13-216 (327)
65 2r44_A Uncharacterized protein 99.6 3E-15 1E-19 138.1 15.4 155 47-229 18-200 (331)
66 2qby_A CDC6 homolog 1, cell di 99.6 5.7E-15 1.9E-19 138.3 16.6 195 53-265 17-253 (386)
67 1sxj_B Activator 1 37 kDa subu 99.6 4.2E-15 1.4E-19 136.1 14.8 184 45-261 10-213 (323)
68 1sxj_A Activator 1 95 kDa subu 99.6 1.1E-15 3.8E-20 149.4 10.9 201 44-258 27-253 (516)
69 1sxj_E Activator 1 40 kDa subu 99.6 4.8E-15 1.7E-19 137.8 14.2 187 45-262 3-242 (354)
70 3pxi_A Negative regulator of g 99.6 3.3E-15 1.1E-19 152.6 13.7 199 56-270 491-730 (758)
71 1r6b_X CLPA protein; AAA+, N-t 99.6 1.1E-14 3.6E-19 148.9 12.2 197 56-269 458-720 (758)
72 1sxj_C Activator 1 40 kDa subu 99.5 1.2E-13 4.3E-18 127.8 15.9 171 45-247 14-203 (340)
73 3f9v_A Minichromosome maintena 99.5 2.6E-15 9E-20 148.7 3.1 149 56-217 295-472 (595)
74 1qvr_A CLPB protein; coiled co 99.5 7.8E-14 2.7E-18 144.2 14.0 201 56-270 558-825 (854)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.9E-14 1E-18 137.9 10.1 186 56-267 22-269 (500)
76 2bjv_A PSP operon transcriptio 99.5 2.5E-13 8.5E-18 121.2 15.2 141 53-215 3-171 (265)
77 3n70_A Transport activator; si 99.5 4.2E-14 1.4E-18 114.7 7.9 112 57-202 2-116 (145)
78 3k1j_A LON protease, ATP-depen 99.5 1.6E-13 5.4E-18 136.6 12.0 54 48-115 33-86 (604)
79 1ojl_A Transcriptional regulat 99.4 3E-13 1E-17 123.3 11.0 186 56-264 2-235 (304)
80 1a5t_A Delta prime, HOLB; zinc 99.4 9.2E-13 3.2E-17 121.7 13.9 171 59-259 5-207 (334)
81 3co5_A Putative two-component 99.4 4.7E-14 1.6E-18 114.2 4.1 112 57-202 5-116 (143)
82 3vlf_B 26S protease regulatory 99.4 2.1E-13 7.3E-18 100.6 6.9 82 219-337 6-88 (88)
83 3aji_B S6C, proteasome (prosom 99.4 2.2E-13 7.5E-18 99.5 3.2 78 219-334 6-83 (83)
84 2gno_A DNA polymerase III, gam 99.3 1.8E-11 6.3E-16 111.3 13.0 122 60-212 1-132 (305)
85 1w5s_A Origin recognition comp 99.3 2.4E-11 8.1E-16 114.9 13.7 202 54-265 20-274 (412)
86 3ec2_A DNA replication protein 99.3 7.6E-12 2.6E-16 104.9 7.8 147 49-217 3-166 (180)
87 3cmw_A Protein RECA, recombina 99.3 8.6E-12 2.9E-16 134.4 9.1 148 50-201 1014-1217(1706)
88 2dzn_B 26S protease regulatory 99.2 1.8E-12 6.3E-17 94.3 0.6 79 219-334 3-82 (82)
89 2krk_A 26S protease regulatory 99.2 9.8E-12 3.4E-16 91.0 4.0 69 219-324 16-84 (86)
90 3kw6_A 26S protease regulatory 99.1 5.1E-11 1.7E-15 85.7 4.6 68 219-323 8-75 (78)
91 2kjq_A DNAA-related protein; s 99.1 1.1E-10 3.8E-15 94.9 6.5 102 88-215 35-141 (149)
92 2w58_A DNAI, primosome compone 99.0 6.2E-10 2.1E-14 94.8 8.5 101 51-161 20-128 (202)
93 3f8t_A Predicted ATPase involv 99.0 1.6E-09 5.4E-14 102.5 9.1 139 58-216 215-374 (506)
94 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.4E-09 4.6E-14 98.6 8.1 116 87-208 121-241 (331)
95 4akg_A Glutathione S-transfera 98.9 8.8E-09 3E-13 115.7 15.9 135 88-229 1266-1433(2695)
96 2qen_A Walker-type ATPase; unk 98.9 6.6E-08 2.3E-12 88.8 16.2 60 48-123 4-63 (350)
97 2qgz_A Helicase loader, putati 98.8 3.1E-09 1E-13 96.8 6.8 98 52-160 120-226 (308)
98 2r2a_A Uncharacterized protein 98.8 4.4E-09 1.5E-13 89.5 6.5 120 90-218 6-149 (199)
99 2fna_A Conserved hypothetical 98.8 1.4E-07 4.8E-12 86.8 17.1 61 48-124 5-65 (357)
100 1ny5_A Transcriptional regulat 98.7 4.3E-08 1.5E-12 92.1 9.4 125 55-202 136-282 (387)
101 1tue_A Replication protein E1; 98.6 1.2E-07 4E-12 80.3 8.2 31 88-118 57-87 (212)
102 3dzd_A Transcriptional regulat 98.6 7.7E-07 2.6E-11 82.9 14.0 124 56-201 129-272 (368)
103 3cmu_A Protein RECA, recombina 98.5 3.6E-07 1.2E-11 100.0 11.6 113 85-200 1423-1562(2050)
104 4akg_A Glutathione S-transfera 98.5 8.5E-07 2.9E-11 99.9 13.8 128 89-228 645-791 (2695)
105 1ye8_A Protein THEP1, hypothet 98.4 2.4E-06 8.4E-11 71.1 10.3 26 91-116 2-27 (178)
106 3vkg_A Dynein heavy chain, cyt 98.2 1.5E-05 5.2E-10 90.7 14.2 130 90-231 605-754 (3245)
107 3hr8_A Protein RECA; alpha and 98.1 1E-05 3.4E-10 74.7 10.5 78 85-162 57-153 (356)
108 1u0j_A DNA replication protein 98.1 2E-06 6.8E-11 75.9 5.1 27 89-115 104-130 (267)
109 2cvh_A DNA repair and recombin 98.1 6.3E-06 2.1E-10 70.4 8.1 40 85-124 16-55 (220)
110 2w0m_A SSO2452; RECA, SSPF, un 98.1 2.1E-05 7.1E-10 67.6 11.2 108 86-202 20-168 (235)
111 1n0w_A DNA repair protein RAD5 98.1 8.6E-06 2.9E-10 70.7 8.1 78 85-162 20-133 (243)
112 2ehv_A Hypothetical protein PH 98.0 2.3E-05 8E-10 68.2 9.7 25 86-110 27-51 (251)
113 1jr3_D DNA polymerase III, del 98.0 4.6E-05 1.6E-09 70.0 12.2 151 88-262 17-190 (343)
114 1svm_A Large T antigen; AAA+ f 98.0 3.7E-06 1.3E-10 78.3 4.7 112 86-218 166-281 (377)
115 1xp8_A RECA protein, recombina 98.0 2.5E-05 8.7E-10 72.4 9.9 78 85-162 70-166 (366)
116 1z6t_A APAF-1, apoptotic prote 98.0 5.9E-05 2E-09 74.4 12.9 51 51-111 119-169 (591)
117 3upu_A ATP-dependent DNA helic 97.9 1.4E-05 5E-10 76.5 7.3 57 44-113 12-69 (459)
118 3sfz_A APAF-1, apoptotic pepti 97.9 0.00016 5.6E-09 77.1 15.9 54 49-112 117-170 (1249)
119 2z43_A DNA repair and recombin 97.9 2.3E-05 7.9E-10 71.6 7.8 78 85-162 103-217 (324)
120 1v5w_A DMC1, meiotic recombina 97.9 2.4E-05 8.3E-10 72.0 7.5 79 84-162 117-233 (343)
121 3vkg_A Dynein heavy chain, cyt 97.9 2.5E-05 8.4E-10 89.0 8.9 123 88-217 1303-1452(3245)
122 2c9o_A RUVB-like 1; hexameric 97.9 3.4E-05 1.2E-09 73.8 8.8 122 149-322 296-438 (456)
123 2zr9_A Protein RECA, recombina 97.9 4.9E-05 1.7E-09 70.1 9.4 78 85-162 57-153 (349)
124 2dr3_A UPF0273 protein PH0284; 97.8 0.00012 4E-09 63.5 11.1 37 85-121 19-58 (247)
125 3trf_A Shikimate kinase, SK; a 97.8 1.3E-05 4.3E-10 66.7 4.0 33 89-121 5-37 (185)
126 1qhx_A CPT, protein (chloramph 97.8 1.8E-05 6.1E-10 65.3 4.9 33 90-122 4-36 (178)
127 1u94_A RECA protein, recombina 97.8 6.7E-05 2.3E-09 69.3 9.1 78 85-162 59-155 (356)
128 3lda_A DNA repair protein RAD5 97.8 6.1E-05 2.1E-09 70.6 8.5 78 85-162 174-287 (400)
129 3vaa_A Shikimate kinase, SK; s 97.8 1.6E-05 5.5E-10 67.1 4.1 35 87-121 23-57 (199)
130 2zts_A Putative uncharacterize 97.8 0.0001 3.6E-09 63.9 9.5 98 85-182 26-169 (251)
131 3cmu_A Protein RECA, recombina 97.7 6.5E-05 2.2E-09 82.6 9.3 78 85-162 1077-1173(2050)
132 4a74_A DNA repair and recombin 97.7 7.1E-05 2.4E-09 64.2 7.0 29 85-113 21-49 (231)
133 2rhm_A Putative kinase; P-loop 97.7 4.1E-05 1.4E-09 63.9 5.0 34 87-120 3-36 (193)
134 3kb2_A SPBC2 prophage-derived 97.7 3.3E-05 1.1E-09 63.1 4.4 31 91-121 3-33 (173)
135 3iij_A Coilin-interacting nucl 97.6 3.3E-05 1.1E-09 63.9 4.2 33 88-120 10-42 (180)
136 1zuh_A Shikimate kinase; alpha 97.6 3.4E-05 1.2E-09 63.1 3.8 33 88-120 6-38 (168)
137 3io5_A Recombination and repai 97.6 0.00014 4.9E-09 65.5 8.1 77 85-162 25-125 (333)
138 2p5t_B PEZT; postsegregational 97.6 0.00012 4.2E-09 64.2 7.5 39 87-125 30-68 (253)
139 1kag_A SKI, shikimate kinase I 97.6 5E-05 1.7E-09 62.2 4.6 31 89-119 4-34 (173)
140 1pzn_A RAD51, DNA repair and r 97.6 0.00015 5.1E-09 66.9 8.1 28 86-113 128-155 (349)
141 2iyv_A Shikimate kinase, SK; t 97.6 4E-05 1.4E-09 63.6 3.8 31 91-121 4-34 (184)
142 3jvv_A Twitching mobility prot 97.6 0.00018 6.2E-09 66.4 8.6 71 88-158 122-206 (356)
143 1y63_A LMAJ004144AAA protein; 97.6 4.1E-05 1.4E-09 63.8 3.7 32 89-120 10-42 (184)
144 1via_A Shikimate kinase; struc 97.6 5.5E-05 1.9E-09 62.3 4.2 30 91-120 6-35 (175)
145 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00018 6.1E-09 63.4 7.8 37 89-125 4-43 (260)
146 2b8t_A Thymidine kinase; deoxy 97.5 0.0004 1.4E-08 59.7 9.7 72 88-160 11-101 (223)
147 2i1q_A DNA repair and recombin 97.5 0.00012 4E-09 66.7 6.7 28 85-112 94-121 (322)
148 3dm5_A SRP54, signal recogniti 97.5 0.00065 2.2E-08 64.3 11.8 73 88-160 99-194 (443)
149 2cdn_A Adenylate kinase; phosp 97.5 6.1E-05 2.1E-09 63.5 4.2 33 88-120 19-51 (201)
150 2c95_A Adenylate kinase 1; tra 97.5 5.9E-05 2E-09 63.0 3.9 34 87-120 7-40 (196)
151 3cm0_A Adenylate kinase; ATP-b 97.5 6.4E-05 2.2E-09 62.4 3.9 32 89-120 4-35 (186)
152 2orw_A Thymidine kinase; TMTK, 97.5 6E-05 2.1E-09 62.9 3.7 31 90-120 4-37 (184)
153 2i3b_A HCR-ntpase, human cance 97.5 5.3E-05 1.8E-09 63.6 3.3 23 91-113 3-25 (189)
154 1zp6_A Hypothetical protein AT 97.5 6.2E-05 2.1E-09 62.7 3.8 38 87-124 7-44 (191)
155 2ze6_A Isopentenyl transferase 97.5 7.1E-05 2.4E-09 65.8 4.3 32 91-122 3-34 (253)
156 1aky_A Adenylate kinase; ATP:A 97.5 8.8E-05 3E-09 63.5 4.8 33 88-120 3-35 (220)
157 1tev_A UMP-CMP kinase; ploop, 97.5 6.6E-05 2.2E-09 62.6 3.8 32 89-120 3-34 (196)
158 3t61_A Gluconokinase; PSI-biol 97.5 8.9E-05 3E-09 62.5 4.5 32 89-120 18-49 (202)
159 1e6c_A Shikimate kinase; phosp 97.5 6.9E-05 2.4E-09 61.3 3.7 30 91-120 4-33 (173)
160 3tlx_A Adenylate kinase 2; str 97.5 0.00012 4.2E-09 63.8 5.5 34 87-120 27-60 (243)
161 2r8r_A Sensor protein; KDPD, P 97.5 0.00017 5.8E-09 61.9 6.1 33 90-122 7-42 (228)
162 3e1s_A Exodeoxyribonuclease V, 97.4 0.00014 4.8E-09 71.5 6.3 98 90-202 205-318 (574)
163 2fz4_A DNA repair protein RAD2 97.4 0.00069 2.4E-08 58.8 10.1 33 91-123 110-142 (237)
164 1g5t_A COB(I)alamin adenosyltr 97.4 0.00032 1.1E-08 58.8 7.5 108 90-211 29-169 (196)
165 1zd8_A GTP:AMP phosphotransfer 97.4 7.7E-05 2.6E-09 64.2 3.5 33 88-120 6-38 (227)
166 1gvn_B Zeta; postsegregational 97.4 0.00018 6.2E-09 64.4 6.0 38 88-125 32-69 (287)
167 2vli_A Antibiotic resistance p 97.4 7.6E-05 2.6E-09 61.7 3.3 30 89-118 5-34 (183)
168 2bwj_A Adenylate kinase 5; pho 97.4 8.6E-05 3E-09 62.2 3.7 32 89-120 12-43 (199)
169 3umf_A Adenylate kinase; rossm 97.4 0.00012 4.3E-09 62.6 4.7 33 86-118 26-58 (217)
170 3lw7_A Adenylate kinase relate 97.4 0.0001 3.6E-09 60.0 4.0 29 91-120 3-31 (179)
171 1ukz_A Uridylate kinase; trans 97.4 0.0001 3.5E-09 62.1 3.9 33 88-120 14-46 (203)
172 1knq_A Gluconate kinase; ALFA/ 97.4 0.00015 5E-09 59.6 4.8 32 88-119 7-38 (175)
173 3fb4_A Adenylate kinase; psych 97.4 9.5E-05 3.3E-09 63.0 3.7 30 91-120 2-31 (216)
174 3dl0_A Adenylate kinase; phosp 97.4 9E-05 3.1E-09 63.2 3.5 30 91-120 2-31 (216)
175 2pt5_A Shikimate kinase, SK; a 97.4 9.8E-05 3.4E-09 60.1 3.6 30 91-120 2-31 (168)
176 2q6t_A DNAB replication FORK h 97.4 0.00057 2E-08 65.0 9.4 39 84-122 195-237 (444)
177 2eyu_A Twitching motility prot 97.4 9E-05 3.1E-09 65.5 3.5 72 87-158 23-108 (261)
178 1ly1_A Polynucleotide kinase; 97.4 8.9E-05 3E-09 61.0 3.3 28 90-117 3-31 (181)
179 1ak2_A Adenylate kinase isoenz 97.4 0.00015 5.2E-09 62.6 5.0 33 88-120 15-47 (233)
180 1kht_A Adenylate kinase; phosp 97.4 0.00011 3.8E-09 61.0 3.9 25 90-114 4-28 (192)
181 4eun_A Thermoresistant glucoki 97.4 0.00016 5.5E-09 60.9 4.8 32 88-119 28-59 (200)
182 1qf9_A UMP/CMP kinase, protein 97.4 0.00016 5.6E-09 60.0 4.8 32 89-120 6-37 (194)
183 1vma_A Cell division protein F 97.3 0.0016 5.5E-08 58.7 11.6 73 87-159 102-197 (306)
184 1zak_A Adenylate kinase; ATP:A 97.3 0.00012 4.2E-09 62.7 4.0 32 88-119 4-35 (222)
185 1cr0_A DNA primase/helicase; R 97.3 0.0013 4.5E-08 58.8 11.0 27 87-113 33-59 (296)
186 2r6a_A DNAB helicase, replicat 97.3 0.00058 2E-08 65.2 8.9 39 84-122 198-240 (454)
187 1nlf_A Regulatory protein REPA 97.3 0.00084 2.9E-08 59.6 9.4 27 87-113 28-54 (279)
188 3be4_A Adenylate kinase; malar 97.3 0.00014 4.9E-09 62.1 4.2 31 90-120 6-36 (217)
189 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00013 4.4E-09 66.9 3.8 30 90-119 25-54 (359)
190 3sr0_A Adenylate kinase; phosp 97.3 0.00019 6.6E-09 61.0 4.3 29 91-119 2-30 (206)
191 2pez_A Bifunctional 3'-phospho 97.2 0.00028 9.7E-09 58.1 5.0 35 88-122 4-41 (179)
192 2v54_A DTMP kinase, thymidylat 97.2 0.00021 7.3E-09 60.0 4.2 34 88-121 3-37 (204)
193 2bbw_A Adenylate kinase 4, AK4 97.2 0.00024 8.3E-09 61.9 4.7 33 87-119 25-57 (246)
194 3bh0_A DNAB-like replicative h 97.2 0.003 1E-07 57.2 12.1 39 84-122 63-104 (315)
195 1cke_A CK, MSSA, protein (cyti 97.2 0.00027 9.3E-09 60.5 4.9 30 90-119 6-35 (227)
196 1e4v_A Adenylate kinase; trans 97.2 0.00023 8E-09 60.6 4.3 30 91-120 2-31 (214)
197 3cmw_A Protein RECA, recombina 97.2 0.00091 3.1E-08 72.8 9.8 78 86-163 1428-1524(1706)
198 3uie_A Adenylyl-sulfate kinase 97.2 0.00032 1.1E-08 59.0 5.1 37 87-123 23-62 (200)
199 2pbr_A DTMP kinase, thymidylat 97.2 0.00027 9.3E-09 58.7 4.5 31 91-121 2-35 (195)
200 2iut_A DNA translocase FTSK; n 97.2 0.0018 6E-08 63.1 10.6 34 90-123 215-255 (574)
201 3crm_A TRNA delta(2)-isopenten 97.2 0.00024 8.1E-09 64.5 4.2 33 90-122 6-38 (323)
202 2jaq_A Deoxyguanosine kinase; 97.2 0.00025 8.6E-09 59.5 4.0 28 91-118 2-29 (205)
203 1t6n_A Probable ATP-dependent 97.2 0.0044 1.5E-07 52.5 11.8 62 51-113 12-75 (220)
204 3r20_A Cytidylate kinase; stru 97.2 0.00033 1.1E-08 60.6 4.7 32 88-119 8-39 (233)
205 3kl4_A SRP54, signal recogniti 97.2 0.0011 3.9E-08 62.5 8.6 73 88-160 96-191 (433)
206 2xb4_A Adenylate kinase; ATP-b 97.2 0.00029 9.9E-09 60.5 4.2 30 91-120 2-31 (223)
207 2z0h_A DTMP kinase, thymidylat 97.1 0.00036 1.2E-08 58.2 4.6 30 92-121 3-35 (197)
208 3nwj_A ATSK2; P loop, shikimat 97.1 0.00037 1.3E-08 61.0 4.6 33 89-121 48-80 (250)
209 1nks_A Adenylate kinase; therm 97.1 0.00019 6.6E-09 59.5 2.7 24 91-114 3-26 (194)
210 2if2_A Dephospho-COA kinase; a 97.1 0.00024 8.4E-09 59.8 3.2 30 91-121 3-32 (204)
211 2ewv_A Twitching motility prot 97.1 0.00025 8.7E-09 65.9 3.4 72 87-158 134-219 (372)
212 2wwf_A Thymidilate kinase, put 97.1 0.00018 6E-09 60.9 2.1 29 88-116 9-37 (212)
213 2grj_A Dephospho-COA kinase; T 97.1 0.00031 1.1E-08 58.9 3.5 31 90-120 13-43 (192)
214 2px0_A Flagellar biosynthesis 97.1 0.0045 1.5E-07 55.5 11.4 36 87-122 103-142 (296)
215 2plr_A DTMP kinase, probable t 97.0 0.00041 1.4E-08 58.5 4.1 28 89-116 4-31 (213)
216 1nn5_A Similar to deoxythymidy 97.0 0.00022 7.5E-09 60.4 2.3 28 88-115 8-35 (215)
217 3ake_A Cytidylate kinase; CMP 97.0 0.00051 1.8E-08 57.8 4.4 30 91-120 4-33 (208)
218 2qor_A Guanylate kinase; phosp 97.0 0.00041 1.4E-08 58.5 3.8 28 87-114 10-37 (204)
219 1vt4_I APAF-1 related killer D 97.0 0.002 6.7E-08 67.0 9.3 43 59-112 131-173 (1221)
220 4e22_A Cytidylate kinase; P-lo 97.0 0.00059 2E-08 59.8 4.8 32 88-119 26-57 (252)
221 3bgw_A DNAB-like replicative h 97.0 0.0057 2E-07 58.1 11.9 39 84-122 192-233 (444)
222 1jjv_A Dephospho-COA kinase; P 97.0 0.00046 1.6E-08 58.2 3.7 29 91-120 4-32 (206)
223 3a8t_A Adenylate isopentenyltr 97.0 0.00038 1.3E-08 63.4 3.3 34 89-122 40-73 (339)
224 1uf9_A TT1252 protein; P-loop, 97.0 0.00063 2.2E-08 57.0 4.4 32 88-120 7-38 (203)
225 1vht_A Dephospho-COA kinase; s 96.9 0.0007 2.4E-08 57.6 4.6 31 89-120 4-34 (218)
226 2ius_A DNA translocase FTSK; n 96.9 0.0062 2.1E-07 58.7 11.4 35 89-123 167-208 (512)
227 1uj2_A Uridine-cytidine kinase 96.9 0.00083 2.8E-08 58.7 4.9 40 88-127 21-68 (252)
228 1p9r_A General secretion pathw 96.9 0.0043 1.5E-07 58.4 10.0 94 52-158 143-246 (418)
229 3foz_A TRNA delta(2)-isopenten 96.9 0.00076 2.6E-08 60.6 4.4 34 89-122 10-43 (316)
230 1tf7_A KAIC; homohexamer, hexa 96.9 0.0065 2.2E-07 59.0 11.3 112 87-205 37-188 (525)
231 2gxq_A Heat resistant RNA depe 96.9 0.0064 2.2E-07 50.8 9.9 20 89-108 38-57 (207)
232 1q57_A DNA primase/helicase; d 96.8 0.0053 1.8E-07 59.3 10.5 38 85-122 238-279 (503)
233 1q3t_A Cytidylate kinase; nucl 96.8 0.0011 3.6E-08 57.4 5.0 34 87-120 14-47 (236)
234 3zvl_A Bifunctional polynucleo 96.8 0.0012 4.2E-08 62.2 5.8 32 88-119 257-288 (416)
235 2j41_A Guanylate kinase; GMP, 96.8 0.00068 2.3E-08 56.9 3.5 27 87-113 4-30 (207)
236 2a5y_B CED-4; apoptosis; HET: 96.8 0.0053 1.8E-07 59.9 10.2 44 59-111 131-174 (549)
237 2qt1_A Nicotinamide riboside k 96.8 0.0006 2.1E-08 57.6 3.0 33 87-119 19-52 (207)
238 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0011 3.7E-08 60.6 4.9 71 88-158 170-250 (330)
239 1kgd_A CASK, peripheral plasma 96.8 0.00084 2.9E-08 55.5 3.8 26 89-114 5-30 (180)
240 2h92_A Cytidylate kinase; ross 96.8 0.0011 3.6E-08 56.5 4.5 31 90-120 4-34 (219)
241 3b6e_A Interferon-induced heli 96.8 0.0047 1.6E-07 51.9 8.4 24 90-113 49-72 (216)
242 2yvu_A Probable adenylyl-sulfa 96.8 0.00099 3.4E-08 55.2 4.0 35 87-121 11-48 (186)
243 1m7g_A Adenylylsulfate kinase; 96.8 0.0012 4.1E-08 55.9 4.7 37 87-123 23-63 (211)
244 3tau_A Guanylate kinase, GMP k 96.7 0.00084 2.9E-08 56.9 3.5 28 87-114 6-33 (208)
245 2f6r_A COA synthase, bifunctio 96.7 0.00085 2.9E-08 59.8 3.7 31 89-120 75-105 (281)
246 3d3q_A TRNA delta(2)-isopenten 96.7 0.00084 2.9E-08 61.3 3.7 32 90-121 8-39 (340)
247 1w36_D RECD, exodeoxyribonucle 96.7 0.0028 9.7E-08 62.7 7.7 25 89-113 164-188 (608)
248 1ex7_A Guanylate kinase; subst 96.7 0.0012 4.2E-08 55.0 4.2 25 90-114 2-26 (186)
249 3tr0_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 55.6 3.9 27 88-114 6-32 (205)
250 2bdt_A BH3686; alpha-beta prot 96.7 0.0012 4.2E-08 54.7 4.1 25 91-115 4-28 (189)
251 1lvg_A Guanylate kinase, GMP k 96.7 0.00097 3.3E-08 56.1 3.5 27 88-114 3-29 (198)
252 3exa_A TRNA delta(2)-isopenten 96.7 0.0011 3.9E-08 59.6 3.9 32 90-121 4-35 (322)
253 3fdi_A Uncharacterized protein 96.6 0.0014 4.7E-08 55.4 4.0 30 90-119 7-36 (201)
254 1ltq_A Polynucleotide kinase; 96.6 0.0011 3.9E-08 59.2 3.7 29 90-118 3-32 (301)
255 1tf7_A KAIC; homohexamer, hexa 96.6 0.0082 2.8E-07 58.3 9.6 96 86-182 278-404 (525)
256 2qmh_A HPR kinase/phosphorylas 96.5 0.0012 4E-08 55.5 3.0 33 88-121 33-65 (205)
257 2xau_A PRE-mRNA-splicing facto 96.5 0.0052 1.8E-07 62.5 8.3 62 51-112 70-132 (773)
258 3asz_A Uridine kinase; cytidin 96.5 0.0016 5.4E-08 55.0 3.8 27 88-114 5-31 (211)
259 3a00_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 54.3 3.5 25 90-114 2-26 (186)
260 1w4r_A Thymidine kinase; type 96.5 0.0019 6.7E-08 54.0 4.1 70 89-160 20-103 (195)
261 3c8u_A Fructokinase; YP_612366 96.5 0.0015 5.1E-08 55.3 3.5 28 87-114 20-47 (208)
262 3eph_A TRNA isopentenyltransfe 96.5 0.0017 5.7E-08 60.6 4.1 32 90-121 3-34 (409)
263 4b3f_X DNA-binding protein smu 96.5 0.012 4.1E-07 58.6 10.6 71 60-154 190-263 (646)
264 1rz3_A Hypothetical protein rb 96.5 0.003 1E-07 53.1 5.1 35 87-121 20-57 (201)
265 3ney_A 55 kDa erythrocyte memb 96.4 0.0019 6.7E-08 54.2 3.7 27 88-114 18-44 (197)
266 2v3c_C SRP54, signal recogniti 96.4 0.0072 2.5E-07 57.1 7.9 36 88-123 98-136 (432)
267 1htw_A HI0065; nucleotide-bind 96.4 0.0024 8.2E-08 51.7 4.0 27 87-113 31-57 (158)
268 1z6g_A Guanylate kinase; struc 96.4 0.002 6.9E-08 55.0 3.6 27 87-113 21-47 (218)
269 1znw_A Guanylate kinase, GMP k 96.4 0.0023 7.8E-08 54.0 3.8 28 87-114 18-45 (207)
270 3e70_C DPA, signal recognition 96.4 0.012 4E-07 53.5 8.8 27 87-113 127-153 (328)
271 1s96_A Guanylate kinase, GMP k 96.4 0.0022 7.6E-08 54.8 3.8 28 87-114 14-41 (219)
272 2j37_W Signal recognition part 96.3 0.01 3.5E-07 57.2 8.6 73 88-160 100-195 (504)
273 1x6v_B Bifunctional 3'-phospho 96.3 0.0034 1.2E-07 62.0 5.3 36 88-123 51-89 (630)
274 4eaq_A DTMP kinase, thymidylat 96.3 0.0028 9.5E-08 54.6 4.2 32 88-119 25-58 (229)
275 1gtv_A TMK, thymidylate kinase 96.3 0.0012 3.9E-08 55.9 1.7 25 91-115 2-26 (214)
276 3thx_B DNA mismatch repair pro 96.3 0.019 6.6E-07 59.2 11.0 23 89-111 673-695 (918)
277 3iuy_A Probable ATP-dependent 96.3 0.017 6E-07 49.1 9.1 21 88-108 56-76 (228)
278 2oap_1 GSPE-2, type II secreti 96.3 0.0029 9.8E-08 61.2 4.4 71 88-158 259-343 (511)
279 1oyw_A RECQ helicase, ATP-depe 96.2 0.024 8.3E-07 54.9 10.9 34 89-122 40-73 (523)
280 4gp7_A Metallophosphoesterase; 96.2 0.0019 6.5E-08 52.8 2.5 22 87-108 7-28 (171)
281 1c9k_A COBU, adenosylcobinamid 96.2 0.0028 9.7E-08 52.4 3.4 32 92-124 2-33 (180)
282 2xxa_A Signal recognition part 96.2 0.016 5.5E-07 54.8 9.0 73 88-160 99-195 (433)
283 2jeo_A Uridine-cytidine kinase 96.2 0.0034 1.1E-07 54.5 4.1 30 87-116 23-52 (245)
284 1zu4_A FTSY; GTPase, signal re 96.2 0.022 7.6E-07 51.5 9.5 36 87-122 103-141 (320)
285 1odf_A YGR205W, hypothetical 3 96.2 0.0066 2.3E-07 54.2 5.9 28 87-114 29-56 (290)
286 2v9p_A Replication protein E1; 96.2 0.0036 1.2E-07 56.3 4.2 30 86-115 123-152 (305)
287 2yhs_A FTSY, cell division pro 96.1 0.023 7.7E-07 54.4 9.6 27 87-113 291-317 (503)
288 3gmt_A Adenylate kinase; ssgci 96.1 0.0041 1.4E-07 53.5 4.1 30 91-120 10-39 (230)
289 3hdt_A Putative kinase; struct 96.1 0.0038 1.3E-07 53.6 3.9 30 90-119 15-44 (223)
290 1ls1_A Signal recognition part 96.1 0.022 7.4E-07 51.0 9.0 73 88-160 97-192 (295)
291 1j8m_F SRP54, signal recogniti 96.1 0.012 4.1E-07 52.8 7.2 72 89-160 98-192 (297)
292 3b9q_A Chloroplast SRP recepto 96.1 0.0053 1.8E-07 55.2 4.9 27 87-113 98-124 (302)
293 2gza_A Type IV secretion syste 96.0 0.0079 2.7E-07 55.5 5.7 72 87-158 173-262 (361)
294 3fe2_A Probable ATP-dependent 96.0 0.022 7.6E-07 49.0 8.2 20 89-108 66-85 (242)
295 3p32_A Probable GTPase RV1496/ 96.0 0.042 1.4E-06 50.4 10.6 26 88-113 78-103 (355)
296 1a7j_A Phosphoribulokinase; tr 95.9 0.003 1E-07 56.5 2.4 36 90-125 6-44 (290)
297 1sky_E F1-ATPase, F1-ATP synth 95.9 0.01 3.4E-07 56.4 6.0 25 89-113 151-175 (473)
298 3lnc_A Guanylate kinase, GMP k 95.9 0.0026 8.9E-08 54.6 1.8 27 87-113 25-52 (231)
299 3aez_A Pantothenate kinase; tr 95.9 0.0058 2E-07 55.2 4.1 28 87-114 88-115 (312)
300 2ged_A SR-beta, signal recogni 95.8 0.011 3.7E-07 48.7 5.4 47 61-113 26-72 (193)
301 2og2_A Putative signal recogni 95.8 0.0073 2.5E-07 55.6 4.7 27 87-113 155-181 (359)
302 1m8p_A Sulfate adenylyltransfe 95.8 0.0062 2.1E-07 59.7 4.4 36 88-123 395-434 (573)
303 3tqf_A HPR(Ser) kinase; transf 95.8 0.0058 2E-07 50.0 3.3 25 88-112 15-39 (181)
304 3thx_A DNA mismatch repair pro 95.7 0.059 2E-06 55.8 11.4 21 90-110 663-683 (934)
305 1rj9_A FTSY, signal recognitio 95.7 0.0068 2.3E-07 54.5 4.0 26 88-113 101-126 (304)
306 3tif_A Uncharacterized ABC tra 95.7 0.0049 1.7E-07 53.3 2.9 28 87-114 29-56 (235)
307 2axn_A 6-phosphofructo-2-kinas 95.7 0.0066 2.3E-07 58.9 4.1 28 88-115 34-61 (520)
308 3pey_A ATP-dependent RNA helic 95.7 0.052 1.8E-06 49.7 10.0 57 53-110 5-65 (395)
309 2ocp_A DGK, deoxyguanosine kin 95.7 0.008 2.7E-07 51.9 4.1 26 89-114 2-27 (241)
310 3tqc_A Pantothenate kinase; bi 95.7 0.0078 2.7E-07 54.5 4.1 27 88-114 91-117 (321)
311 3tmk_A Thymidylate kinase; pho 95.6 0.014 4.9E-07 49.7 5.5 31 88-118 4-34 (216)
312 2cbz_A Multidrug resistance-as 95.6 0.0056 1.9E-07 53.0 2.9 27 87-113 29-55 (237)
313 1xjc_A MOBB protein homolog; s 95.6 0.0086 2.9E-07 49.0 3.8 24 90-113 5-28 (169)
314 2j9r_A Thymidine kinase; TK1, 95.6 0.014 4.9E-07 49.4 5.2 32 90-121 29-63 (214)
315 3kta_A Chromosome segregation 95.6 0.0088 3E-07 49.0 3.8 24 91-114 28-51 (182)
316 1g8f_A Sulfate adenylyltransfe 95.6 0.011 3.7E-07 57.0 4.9 28 88-115 394-421 (511)
317 2qm8_A GTPase/ATPase; G protei 95.5 0.032 1.1E-06 50.8 7.8 27 87-113 53-79 (337)
318 1p5z_B DCK, deoxycytidine kina 95.5 0.0035 1.2E-07 55.0 1.3 28 87-114 22-49 (263)
319 1np6_A Molybdopterin-guanine d 95.5 0.0098 3.3E-07 48.9 3.9 25 89-113 6-30 (174)
320 2pcj_A ABC transporter, lipopr 95.5 0.005 1.7E-07 52.8 2.2 28 87-114 28-55 (224)
321 3v9p_A DTMP kinase, thymidylat 95.5 0.012 4.3E-07 50.4 4.6 26 88-113 24-49 (227)
322 3cr8_A Sulfate adenylyltranfer 95.5 0.0066 2.3E-07 59.2 3.1 39 87-125 367-409 (552)
323 1sq5_A Pantothenate kinase; P- 95.4 0.01 3.5E-07 53.4 4.1 27 88-114 79-105 (308)
324 3vkw_A Replicase large subunit 95.4 0.011 3.8E-07 55.7 4.4 24 88-111 160-183 (446)
325 2f1r_A Molybdopterin-guanine d 95.4 0.0073 2.5E-07 49.5 2.8 24 91-114 4-27 (171)
326 1b0u_A Histidine permease; ABC 95.4 0.0071 2.4E-07 53.2 2.8 28 87-114 30-57 (262)
327 1wb9_A DNA mismatch repair pro 95.4 0.077 2.6E-06 54.0 10.7 23 90-112 608-630 (800)
328 1mv5_A LMRA, multidrug resista 95.4 0.0071 2.4E-07 52.5 2.8 27 87-113 26-52 (243)
329 4i1u_A Dephospho-COA kinase; s 95.4 0.0097 3.3E-07 50.4 3.4 32 89-121 9-40 (210)
330 3fvq_A Fe(3+) IONS import ATP- 95.4 0.0084 2.9E-07 55.1 3.3 27 87-113 28-54 (359)
331 2onk_A Molybdate/tungstate ABC 95.4 0.0088 3E-07 51.8 3.2 26 87-113 23-48 (240)
332 4edh_A DTMP kinase, thymidylat 95.3 0.012 4E-07 50.1 3.8 32 89-120 6-40 (213)
333 2zu0_C Probable ATP-dependent 95.3 0.0094 3.2E-07 52.6 3.4 26 87-112 44-69 (267)
334 2ghi_A Transport protein; mult 95.3 0.0081 2.8E-07 52.7 2.9 27 87-113 44-70 (260)
335 2ixe_A Antigen peptide transpo 95.3 0.0083 2.8E-07 53.0 2.9 27 87-113 43-69 (271)
336 1sgw_A Putative ABC transporte 95.3 0.0067 2.3E-07 51.6 2.2 28 87-114 33-60 (214)
337 2orv_A Thymidine kinase; TP4A 95.3 0.066 2.3E-06 45.8 8.3 32 90-121 20-54 (234)
338 2olj_A Amino acid ABC transpor 95.3 0.0084 2.9E-07 52.7 2.8 28 87-114 48-75 (263)
339 2ffh_A Protein (FFH); SRP54, s 95.3 0.062 2.1E-06 50.5 8.9 73 88-160 97-192 (425)
340 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0088 3E-07 52.2 2.9 26 87-112 27-52 (250)
341 3h1t_A Type I site-specific re 95.2 0.054 1.9E-06 53.1 8.9 25 89-113 198-222 (590)
342 2ff7_A Alpha-hemolysin translo 95.2 0.0075 2.5E-07 52.5 2.4 27 87-113 33-59 (247)
343 2p67_A LAO/AO transport system 95.2 0.061 2.1E-06 49.0 8.6 27 87-113 54-80 (341)
344 1g6h_A High-affinity branched- 95.2 0.0076 2.6E-07 52.8 2.4 27 87-113 31-57 (257)
345 2pze_A Cystic fibrosis transme 95.2 0.0077 2.6E-07 51.8 2.3 27 87-113 32-58 (229)
346 2p6r_A Afuhel308 helicase; pro 95.2 0.028 9.5E-07 56.5 6.8 22 88-109 39-60 (702)
347 3d31_A Sulfate/molybdate ABC t 95.2 0.0097 3.3E-07 54.6 3.1 27 87-113 24-50 (348)
348 1vpl_A ABC transporter, ATP-bi 95.2 0.0094 3.2E-07 52.2 2.8 27 87-113 39-65 (256)
349 3gfo_A Cobalt import ATP-bindi 95.2 0.0078 2.7E-07 53.3 2.3 27 87-113 32-58 (275)
350 1ji0_A ABC transporter; ATP bi 95.2 0.008 2.7E-07 52.1 2.4 27 87-113 30-56 (240)
351 2yyz_A Sugar ABC transporter, 95.2 0.011 3.8E-07 54.4 3.4 27 87-113 27-53 (359)
352 2it1_A 362AA long hypothetical 95.2 0.011 3.8E-07 54.5 3.4 27 87-113 27-53 (362)
353 3sop_A Neuronal-specific septi 95.2 0.012 4E-07 52.0 3.4 23 91-113 4-26 (270)
354 2yz2_A Putative ABC transporte 95.2 0.0096 3.3E-07 52.4 2.9 27 87-113 31-57 (266)
355 3rlf_A Maltose/maltodextrin im 95.1 0.011 3.8E-07 54.7 3.4 27 87-113 27-53 (381)
356 2gk6_A Regulator of nonsense t 95.1 0.021 7.3E-07 56.6 5.6 38 61-113 182-219 (624)
357 1bif_A 6-phosphofructo-2-kinas 95.1 0.0075 2.6E-07 57.7 2.3 28 88-115 38-65 (469)
358 1v43_A Sugar-binding transport 95.1 0.012 4E-07 54.5 3.4 27 87-113 35-61 (372)
359 4g1u_C Hemin import ATP-bindin 95.1 0.0085 2.9E-07 52.8 2.3 27 87-113 35-61 (266)
360 2v1x_A ATP-dependent DNA helic 95.1 0.075 2.6E-06 52.3 9.3 32 89-120 59-90 (591)
361 2qi9_C Vitamin B12 import ATP- 95.1 0.0088 3E-07 52.2 2.3 28 87-114 24-51 (249)
362 1z47_A CYSA, putative ABC-tran 95.1 0.01 3.5E-07 54.5 2.9 27 87-113 39-65 (355)
363 3b85_A Phosphate starvation-in 95.1 0.0097 3.3E-07 50.4 2.5 24 89-112 22-45 (208)
364 3lv8_A DTMP kinase, thymidylat 95.0 0.015 5.3E-07 50.2 3.8 26 89-114 27-52 (236)
365 3ld9_A DTMP kinase, thymidylat 95.0 0.017 5.9E-07 49.4 4.0 28 88-115 20-47 (223)
366 4f4c_A Multidrug resistance pr 95.0 0.097 3.3E-06 56.4 10.7 29 86-114 441-469 (1321)
367 1lw7_A Transcriptional regulat 95.0 0.014 4.7E-07 53.9 3.6 28 89-116 170-197 (365)
368 1oxx_K GLCV, glucose, ABC tran 95.0 0.01 3.5E-07 54.5 2.7 27 87-113 29-55 (353)
369 1oix_A RAS-related protein RAB 95.0 0.013 4.3E-07 48.5 3.0 23 91-113 31-53 (191)
370 2f9l_A RAB11B, member RAS onco 95.0 0.013 4.6E-07 48.6 3.2 23 90-112 6-28 (199)
371 2ihy_A ABC transporter, ATP-bi 95.0 0.0096 3.3E-07 52.8 2.3 28 87-114 45-72 (279)
372 2nq2_C Hypothetical ABC transp 95.0 0.0099 3.4E-07 52.0 2.3 27 87-113 29-55 (253)
373 2wsm_A Hydrogenase expression/ 95.0 0.02 6.7E-07 48.3 4.2 26 89-114 30-55 (221)
374 4a1f_A DNAB helicase, replicat 94.9 0.029 9.8E-07 51.1 5.4 38 85-122 42-82 (338)
375 1g29_1 MALK, maltose transport 94.9 0.012 4E-07 54.5 2.9 27 87-113 27-53 (372)
376 3oiy_A Reverse gyrase helicase 94.9 0.046 1.6E-06 50.9 7.0 22 89-110 36-57 (414)
377 1nrj_B SR-beta, signal recogni 94.9 0.019 6.5E-07 48.3 3.9 26 88-113 11-36 (218)
378 2dyk_A GTP-binding protein; GT 94.8 0.017 5.9E-07 45.6 3.3 22 91-112 3-24 (161)
379 3gd7_A Fusion complex of cysti 94.8 0.015 5.1E-07 54.2 3.3 26 87-112 45-70 (390)
380 3nh6_A ATP-binding cassette SU 94.8 0.012 4.2E-07 52.9 2.6 28 86-113 77-104 (306)
381 4tmk_A Protein (thymidylate ki 94.7 0.021 7.2E-07 48.5 3.7 24 90-113 4-27 (213)
382 1wp9_A ATP-dependent RNA helic 94.7 0.11 3.8E-06 48.6 9.3 33 91-123 25-61 (494)
383 2bbs_A Cystic fibrosis transme 94.7 0.014 4.9E-07 52.0 2.7 28 86-113 61-88 (290)
384 3eiq_A Eukaryotic initiation f 94.6 0.11 3.9E-06 47.9 8.9 56 53-110 40-98 (414)
385 2zej_A Dardarin, leucine-rich 94.6 0.015 5E-07 47.7 2.5 21 91-111 4-24 (184)
386 1z2a_A RAS-related protein RAB 94.6 0.021 7.2E-07 45.4 3.3 23 90-112 6-28 (168)
387 2hf9_A Probable hydrogenase ni 94.6 0.043 1.5E-06 46.4 5.5 27 88-114 37-63 (226)
388 2fwr_A DNA repair protein RAD2 94.6 0.022 7.4E-07 54.2 3.9 34 90-123 109-142 (472)
389 2wji_A Ferrous iron transport 94.6 0.019 6.5E-07 46.1 3.0 22 90-111 4-25 (165)
390 2wjy_A Regulator of nonsense t 94.6 0.036 1.2E-06 56.5 5.7 38 61-113 358-395 (800)
391 2vp4_A Deoxynucleoside kinase; 94.5 0.022 7.6E-07 48.7 3.5 33 87-120 18-50 (230)
392 2pjz_A Hypothetical protein ST 94.5 0.016 5.6E-07 50.9 2.7 25 89-113 30-54 (263)
393 2ce2_X GTPase HRAS; signaling 94.5 0.021 7.3E-07 45.1 3.2 22 91-112 5-26 (166)
394 1upt_A ARL1, ADP-ribosylation 94.5 0.026 9E-07 45.0 3.8 26 87-112 5-30 (171)
395 4hlc_A DTMP kinase, thymidylat 94.5 0.038 1.3E-06 46.6 4.8 30 91-120 4-35 (205)
396 1kao_A RAP2A; GTP-binding prot 94.5 0.023 7.8E-07 45.0 3.3 23 90-112 4-26 (167)
397 3ly5_A ATP-dependent RNA helic 94.5 0.23 7.8E-06 43.2 10.1 19 90-108 92-110 (262)
398 1ek0_A Protein (GTP-binding pr 94.5 0.024 8.2E-07 45.1 3.3 23 90-112 4-26 (170)
399 3tui_C Methionine import ATP-b 94.4 0.022 7.4E-07 52.5 3.4 27 87-113 52-78 (366)
400 1u8z_A RAS-related protein RAL 94.4 0.025 8.4E-07 44.9 3.3 23 90-112 5-27 (168)
401 2nzj_A GTP-binding protein REM 94.4 0.022 7.5E-07 45.7 3.0 22 90-111 5-26 (175)
402 2lkc_A Translation initiation 94.4 0.029 1E-06 45.1 3.7 25 87-111 6-30 (178)
403 3hjn_A DTMP kinase, thymidylat 94.4 0.045 1.5E-06 45.8 4.9 30 92-121 3-35 (197)
404 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.024 8.3E-07 54.0 3.6 27 87-113 136-162 (460)
405 1z0j_A RAB-22, RAS-related pro 94.4 0.026 8.8E-07 45.0 3.3 24 90-113 7-30 (170)
406 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.026 8.8E-07 45.4 3.3 23 90-112 8-30 (177)
407 1f2t_A RAD50 ABC-ATPase; DNA d 94.3 0.032 1.1E-06 44.4 3.8 24 90-113 24-47 (149)
408 3tbk_A RIG-I helicase domain; 94.3 0.29 9.9E-06 46.9 11.3 33 90-122 20-60 (555)
409 2gj8_A MNME, tRNA modification 94.3 0.025 8.7E-07 45.8 3.2 24 89-112 4-27 (172)
410 1z08_A RAS-related protein RAB 94.3 0.026 8.7E-07 45.1 3.1 23 90-112 7-29 (170)
411 1ky3_A GTP-binding protein YPT 94.3 0.027 9.3E-07 45.4 3.3 24 89-112 8-31 (182)
412 1g16_A RAS-related protein SEC 94.3 0.027 9.1E-07 44.9 3.2 23 90-112 4-26 (170)
413 1c1y_A RAS-related protein RAP 94.2 0.029 1E-06 44.5 3.3 23 90-112 4-26 (167)
414 3q85_A GTP-binding protein REM 94.2 0.026 8.8E-07 45.1 3.0 20 91-110 4-23 (169)
415 2wjg_A FEOB, ferrous iron tran 94.2 0.026 8.9E-07 46.0 3.0 23 90-112 8-30 (188)
416 1r8s_A ADP-ribosylation factor 94.2 0.029 9.8E-07 44.5 3.2 22 91-112 2-23 (164)
417 1ewq_A DNA mismatch repair pro 94.2 0.088 3E-06 53.3 7.4 23 90-112 577-599 (765)
418 1r2q_A RAS-related protein RAB 94.2 0.029 9.8E-07 44.6 3.2 23 90-112 7-29 (170)
419 2o8b_B DNA mismatch repair pro 94.1 0.14 4.8E-06 53.5 9.0 22 89-110 789-810 (1022)
420 2erx_A GTP-binding protein DI- 94.1 0.028 9.5E-07 44.8 3.0 22 90-111 4-25 (172)
421 3q72_A GTP-binding protein RAD 94.1 0.025 8.6E-07 45.0 2.7 21 91-111 4-24 (166)
422 3bc1_A RAS-related protein RAB 94.1 0.031 1.1E-06 45.5 3.3 23 90-112 12-34 (195)
423 2xzl_A ATP-dependent helicase 94.1 0.051 1.7E-06 55.4 5.5 21 91-111 377-397 (802)
424 1pui_A ENGB, probable GTP-bind 94.1 0.014 4.7E-07 48.8 1.1 26 87-112 24-49 (210)
425 4ag6_A VIRB4 ATPase, type IV s 94.0 0.054 1.9E-06 50.2 5.3 35 88-122 34-71 (392)
426 2dpy_A FLII, flagellum-specifi 94.0 0.048 1.6E-06 51.6 4.9 30 87-116 155-184 (438)
427 2y8e_A RAB-protein 6, GH09086P 94.0 0.03 1E-06 45.0 3.1 23 90-112 15-37 (179)
428 1m7b_A RND3/RHOE small GTP-bin 94.0 0.03 1E-06 45.7 3.1 23 90-112 8-30 (184)
429 1nij_A Hypothetical protein YJ 94.0 0.057 1.9E-06 48.7 5.1 24 90-113 5-28 (318)
430 2fn4_A P23, RAS-related protei 94.0 0.03 1E-06 45.1 3.0 23 90-112 10-32 (181)
431 1z0f_A RAB14, member RAS oncog 94.0 0.035 1.2E-06 44.6 3.3 24 90-113 16-39 (179)
432 1ko7_A HPR kinase/phosphatase; 93.9 0.043 1.5E-06 49.3 4.2 29 88-117 143-171 (314)
433 3con_A GTPase NRAS; structural 93.9 0.033 1.1E-06 45.5 3.2 23 90-112 22-44 (190)
434 2oil_A CATX-8, RAS-related pro 93.9 0.033 1.1E-06 45.7 3.2 23 90-112 26-48 (193)
435 2hxs_A RAB-26, RAS-related pro 93.9 0.032 1.1E-06 45.0 3.0 23 90-112 7-29 (178)
436 3l9o_A ATP-dependent RNA helic 93.9 0.45 1.5E-05 50.3 12.5 35 88-122 198-235 (1108)
437 1svi_A GTP-binding protein YSX 93.9 0.036 1.2E-06 45.4 3.4 25 88-112 22-46 (195)
438 3clv_A RAB5 protein, putative; 93.9 0.04 1.4E-06 45.2 3.6 24 89-112 7-30 (208)
439 4dsu_A GTPase KRAS, isoform 2B 93.9 0.034 1.2E-06 45.2 3.2 23 90-112 5-27 (189)
440 2bme_A RAB4A, RAS-related prot 93.9 0.033 1.1E-06 45.2 3.1 23 90-112 11-33 (186)
441 2a9k_A RAS-related protein RAL 93.8 0.038 1.3E-06 44.7 3.3 23 90-112 19-41 (187)
442 3cph_A RAS-related protein SEC 93.8 0.039 1.3E-06 46.0 3.5 25 88-112 19-43 (213)
443 2efe_B Small GTP-binding prote 93.8 0.036 1.2E-06 44.8 3.1 23 90-112 13-35 (181)
444 3fho_A ATP-dependent RNA helic 93.8 0.23 7.9E-06 47.7 9.4 20 89-108 158-177 (508)
445 1m2o_B GTP-binding protein SAR 93.8 0.038 1.3E-06 45.5 3.3 24 89-112 23-46 (190)
446 3iby_A Ferrous iron transport 93.7 0.087 3E-06 45.9 5.7 22 91-112 3-24 (256)
447 3tw8_B RAS-related protein RAB 93.7 0.033 1.1E-06 44.9 2.8 22 90-111 10-31 (181)
448 2obl_A ESCN; ATPase, hydrolase 93.7 0.049 1.7E-06 49.8 4.3 30 87-116 69-98 (347)
449 4a2p_A RIG-I, retinoic acid in 93.7 0.26 8.8E-06 47.4 9.6 33 90-122 23-63 (556)
450 2v6i_A RNA helicase; membrane, 93.7 0.08 2.7E-06 49.9 5.8 17 90-106 3-19 (431)
451 1moz_A ARL1, ADP-ribosylation 93.7 0.04 1.4E-06 44.6 3.3 23 88-110 17-39 (183)
452 2g6b_A RAS-related protein RAB 93.7 0.042 1.4E-06 44.3 3.3 24 89-112 10-33 (180)
453 3kkq_A RAS-related protein M-R 93.7 0.041 1.4E-06 44.6 3.3 23 90-112 19-41 (183)
454 2gks_A Bifunctional SAT/APS ki 93.7 0.039 1.3E-06 53.7 3.7 35 89-123 372-409 (546)
455 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.041 1.4E-06 44.5 3.3 23 90-112 6-28 (186)
456 3ihw_A Centg3; RAS, centaurin, 93.7 0.038 1.3E-06 45.2 3.1 23 90-112 21-43 (184)
457 3bwd_D RAC-like GTP-binding pr 93.6 0.049 1.7E-06 44.0 3.7 24 89-112 8-31 (182)
458 2cxx_A Probable GTP-binding pr 93.6 0.034 1.2E-06 45.3 2.8 22 91-112 3-24 (190)
459 2iwr_A Centaurin gamma 1; ANK 93.6 0.033 1.1E-06 44.9 2.6 23 90-112 8-30 (178)
460 3dmq_A RNA polymerase-associat 93.6 0.17 5.7E-06 52.8 8.5 39 89-127 170-213 (968)
461 2gf9_A RAS-related protein RAB 93.6 0.04 1.4E-06 45.0 3.2 23 90-112 23-45 (189)
462 3c5c_A RAS-like protein 12; GD 93.6 0.04 1.4E-06 45.2 3.2 23 90-112 22-44 (187)
463 2atv_A RERG, RAS-like estrogen 93.6 0.047 1.6E-06 45.0 3.6 24 89-112 28-51 (196)
464 3t1o_A Gliding protein MGLA; G 93.6 0.038 1.3E-06 45.2 3.0 24 90-113 15-38 (198)
465 1yrb_A ATP(GTP)binding protein 93.6 0.087 3E-06 45.6 5.5 34 88-121 13-48 (262)
466 4f4c_A Multidrug resistance pr 93.6 0.2 6.7E-06 54.1 9.1 28 86-113 1102-1129(1321)
467 3dz8_A RAS-related protein RAB 93.5 0.043 1.5E-06 45.0 3.2 24 90-113 24-47 (191)
468 2qag_B Septin-6, protein NEDD5 93.5 0.036 1.2E-06 52.1 3.0 26 87-112 38-65 (427)
469 2bov_A RAla, RAS-related prote 93.5 0.043 1.5E-06 45.4 3.2 23 90-112 15-37 (206)
470 3tkl_A RAS-related protein RAB 93.5 0.044 1.5E-06 44.9 3.2 23 90-112 17-39 (196)
471 1tq4_A IIGP1, interferon-induc 93.5 0.064 2.2E-06 50.2 4.6 24 89-112 69-92 (413)
472 3qks_A DNA double-strand break 93.4 0.055 1.9E-06 45.4 3.8 26 90-115 24-49 (203)
473 2fg5_A RAB-22B, RAS-related pr 93.4 0.045 1.5E-06 45.0 3.2 23 90-112 24-46 (192)
474 1zd9_A ADP-ribosylation factor 93.4 0.045 1.5E-06 44.8 3.2 23 90-112 23-45 (188)
475 1dek_A Deoxynucleoside monopho 93.4 0.041 1.4E-06 47.6 3.0 27 91-117 3-29 (241)
476 1knx_A Probable HPR(Ser) kinas 93.4 0.042 1.4E-06 49.4 3.1 31 87-118 145-175 (312)
477 1ksh_A ARF-like protein 2; sma 93.4 0.047 1.6E-06 44.4 3.3 25 88-112 17-41 (186)
478 1qhl_A Protein (cell division 93.4 0.02 6.7E-07 49.2 0.9 22 93-114 31-52 (227)
479 2rcn_A Probable GTPase ENGC; Y 93.4 0.047 1.6E-06 50.1 3.5 26 89-114 215-240 (358)
480 1z06_A RAS-related protein RAB 93.4 0.048 1.7E-06 44.6 3.3 23 90-112 21-43 (189)
481 3i5x_A ATP-dependent RNA helic 93.4 0.47 1.6E-05 45.9 11.0 20 88-107 110-129 (563)
482 3t5g_A GTP-binding protein RHE 93.4 0.044 1.5E-06 44.3 3.1 23 90-112 7-29 (181)
483 2a5j_A RAS-related protein RAB 93.4 0.046 1.6E-06 44.8 3.2 23 90-112 22-44 (191)
484 2gf0_A GTP-binding protein DI- 93.4 0.054 1.8E-06 44.5 3.6 25 88-112 7-31 (199)
485 3pqc_A Probable GTP-binding pr 93.4 0.05 1.7E-06 44.4 3.4 23 90-112 24-46 (195)
486 2p5s_A RAS and EF-hand domain 93.4 0.051 1.8E-06 44.9 3.5 24 89-112 28-51 (199)
487 1vg8_A RAS-related protein RAB 93.4 0.046 1.6E-06 45.3 3.2 25 89-113 8-32 (207)
488 3reg_A RHO-like small GTPase; 93.4 0.047 1.6E-06 44.8 3.2 23 90-112 24-46 (194)
489 3k53_A Ferrous iron transport 93.3 0.046 1.6E-06 47.9 3.3 23 90-112 4-26 (271)
490 1x3s_A RAS-related protein RAB 93.3 0.048 1.6E-06 44.6 3.2 23 90-112 16-38 (195)
491 2bcg_Y Protein YP2, GTP-bindin 93.3 0.046 1.6E-06 45.4 3.1 23 90-112 9-31 (206)
492 1fzq_A ADP-ribosylation factor 93.3 0.05 1.7E-06 44.3 3.2 24 89-112 16-39 (181)
493 2www_A Methylmalonic aciduria 93.3 0.057 2E-06 49.4 3.9 25 89-113 74-98 (349)
494 1zj6_A ADP-ribosylation factor 93.3 0.054 1.8E-06 44.2 3.4 24 88-111 15-38 (187)
495 1gwn_A RHO-related GTP-binding 93.3 0.047 1.6E-06 45.7 3.1 23 90-112 29-51 (205)
496 1zbd_A Rabphilin-3A; G protein 93.3 0.049 1.7E-06 45.0 3.2 23 90-112 9-31 (203)
497 3oes_A GTPase rhebl1; small GT 93.2 0.048 1.6E-06 45.2 3.1 24 89-112 24-47 (201)
498 2ew1_A RAS-related protein RAB 93.2 0.048 1.6E-06 45.5 3.1 23 90-112 27-49 (201)
499 1qde_A EIF4A, translation init 93.1 0.09 3.1E-06 44.3 4.7 54 52-106 13-68 (224)
500 2fh5_B SR-beta, signal recogni 93.1 0.057 2E-06 45.1 3.4 24 89-112 7-30 (214)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-48 Score=362.50 Aligned_cols=256 Identities=32% Similarity=0.503 Sum_probs=223.7
Q ss_pred HhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 41 LVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.+....+.+.|.++|+||+|++++++.|++.+.+|+.+|+++.. ++.+|+|+|||||||||||++|+++|++++.+|+.
T Consensus 133 ~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 34556678889999999999999999999999999999999986 47889999999999999999999999999999999
Q ss_pred EcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809 120 VLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVL 194 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 194 (343)
++++++.++|+|++++.++.+|..|...+||||||||+|.+++... ......++++.|+..|+++.... +|+
T Consensus 213 v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---~V~ 289 (405)
T 4b4t_J 213 VSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK---NIK 289 (405)
T ss_dssp EEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC---CEE
T ss_pred EEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC---CeE
Confidence 9999999999999999999999999999999999999999997422 12344678899999999886643 899
Q ss_pred EEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809 195 VLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a 264 (343)
||+|||+|+.||++++| ||++.|+ |.+||+.+++...+..++|++.||+.|+||||+||.++|++|.+.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999998 9999999999998889999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy7809 265 AREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336 (343)
Q Consensus 265 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~ 336 (343)
+++... .|+.+||+.|++++.+...+..+..++.|
T Consensus 370 ir~~~~-------------------------------------~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 370 LRERRI-------------------------------------HVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHTTCS-------------------------------------BCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHcCCC-------------------------------------CcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 876321 29999999999998765555555555555
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-46 Score=351.69 Aligned_cols=251 Identities=31% Similarity=0.537 Sum_probs=216.7
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
+.+.|.++|+||+|++++|+.|++.+.+|+.+|+++..+ +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 567889999999999999999999999999999999864 7899999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
.++++|++++.++.+|..|...+||||||||+|.++.... ......+.+..++..|++.... .+|+||+|||
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~---~~ViVIaATN 356 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR---GNIKVMFATN 356 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT---TTEEEEEECS
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC---CcEEEEeCCC
Confidence 9999999999999999999999999999999999987432 1233456788889999887654 3899999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
+|+.||++++| ||++.|+ |.+||+.+++...+..+++++.||+.|+||||+||.++|++|.+.|+++...
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999 9999998 9999999999998889999999999999999999999999999999987421
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV-DGALIRKYKRWN 337 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~-~~~~~~~~~~~~ 337 (343)
.|+.+||..|++++.+.. ..+....|.+|+
T Consensus 437 -------------------------------------~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 437 -------------------------------------VATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp -------------------------------------SBCHHHHHHHHHHHHHHHCC-----------
T ss_pred -------------------------------------ccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 299999999999885432 223456788874
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-46 Score=351.26 Aligned_cols=244 Identities=35% Similarity=0.562 Sum_probs=219.9
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+.+.|.++|+||+|++++++.|.+.+.+|+.+|+++... +.+++|+|||||||||||++|+++|.+++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 4567899999999999999999999999999999999865 788999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
+.++++|++++.++.+|..|...+||||||||+|.++.... ......+.+..|+..++++.... +++||+||
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~---~ViVIaAT 328 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG---DVKVIMAT 328 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS---SEEEEEEE
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC---CEEEEEeC
Confidence 99999999999999999999999999999999999997432 12344678889999999876544 89999999
Q ss_pred CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
|+|+.||++++| ||+..|+ |.+||+.+++...+..++|++.||..|+||||+||.++|++|.+.|+++..
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~ 408 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR 408 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999 9999887 999999999999888999999999999999999999999999999987632
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHH
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGAL 329 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~ 329 (343)
. . |+.+||..|++++.|+.+.++
T Consensus 409 ~------------------------------~-------It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 409 M------------------------------Q-------VTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp S------------------------------C-------BCHHHHHHHHHHHHHHHCCCS
T ss_pred C------------------------------c-------cCHHHHHHHHHHHhCCCChhh
Confidence 1 2 999999999999877655443
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-46 Score=351.15 Aligned_cols=253 Identities=32% Similarity=0.514 Sum_probs=221.3
Q ss_pred hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+....+.+.|.++|+||+|++++++.|.+.+.+|+.+|+++... +.+|+|+|||||||||||++|+++|++++.+|+.+
T Consensus 167 ~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 167 VYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred hheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34455677899999999999999999999999999999999864 78999999999999999999999999999999999
Q ss_pred cCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEE
Q psy7809 121 LPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLV 195 (343)
Q Consensus 121 ~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 195 (343)
+++++.++|+|++...++.+|..|...+||||||||+|.++.... ......+.++.|+..|+++.... +++|
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---~viv 323 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG---QTKI 323 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT---SSEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC---CeEE
Confidence 999999999999999999999999999999999999999987422 22344678889999999886643 8999
Q ss_pred EEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 196 LAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 196 I~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
|+|||+|+.||++++| ||++.|+ |.+||+.++.......++|++.||+.|+||||+||.++|+.|.+.|+
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998 7999987 99999999999988899999999999999999999999999999998
Q ss_pred HHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809 266 REVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK 334 (343)
Q Consensus 266 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~ 334 (343)
++... . |+.+||..|++++.|+...+...+|+
T Consensus 404 r~~~~------------------------------~-------i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 404 RDDRD------------------------------H-------INPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp HTTCS------------------------------S-------BCHHHHHHHHHHHHHTCC--------
T ss_pred HcCCC------------------------------C-------CCHHHHHHHHHHHHhccCcccchhhh
Confidence 76321 2 99999999999998876654444443
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-45 Score=347.72 Aligned_cols=241 Identities=32% Similarity=0.512 Sum_probs=219.2
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+.+.|.++|+||+|++++|+.|.+.+.+|+.+|+++... +.+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 4567899999999999999999999999999999998864 788999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch-----hhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH-----EATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~-----~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
+.++++|.+++.++.+|..|...+||||||||+|.+++..... ....+.+..|+..|+++.... +|+||+||
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~---~ViVIaaT 327 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD---RVKVLAAT 327 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC---SSEEEEEC
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC---CEEEEEeC
Confidence 9999999999999999999999999999999999998753322 233567888999999886644 89999999
Q ss_pred CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
|+|+.||++++| ||++.|+ |.+||+.+++......+++++.||+.|+||||+||.++|++|.+.|+++..
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999 9999997 999999999999888999999999999999999999999999999987632
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCC
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVD 326 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~ 326 (343)
. . |+.+||.+|+++++|+.+
T Consensus 408 ~------------------------------~-------i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 S------------------------------S-------VKHEDFVEGISEVQARKS 427 (434)
T ss_dssp S------------------------------S-------BCHHHHHHHHHSCSSSCC
T ss_pred C------------------------------C-------cCHHHHHHHHHHHhCCCC
Confidence 1 2 999999999999998865
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1e-46 Score=380.38 Aligned_cols=282 Identities=34% Similarity=0.552 Sum_probs=195.0
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
+.....|.++|++++|++++++.|.+.+.+|+.++.++..+ ..+++++|||||||||||++|+++|.+++.+|+.++.+
T Consensus 466 ~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~ 545 (806)
T 3cf2_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc
Confidence 34566788999999999999999999999999999998764 78899999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
++.++|+|++++.++.+|..|+..+||||||||+|.+++... .+....+++++|+.+|+++.... +|+||++
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~---~V~vi~a 622 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK---NVFIIGA 622 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS---SEEEECC
T ss_pred hhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC---CEEEEEe
Confidence 999999999999999999999999999999999999997432 34456789999999999987644 8999999
Q ss_pred cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
||+|+.||++++| ||++.++ |.+||+.++++..+..++|++.||+.|+||||+||.++|++|.+.|+++.
T Consensus 623 TN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp -CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred CCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999998 99999999999988899999999999999999999999999999999998
Q ss_pred HHhccccCCC-CCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy7809 269 IQNAGFTGVN-SKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS 342 (343)
Q Consensus 269 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~~ 342 (343)
.......... ...+.. ... ........|+.+||++|++.++||++.++++.|++|+++|+.
T Consensus 703 ~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 703 IESEIRRERERQTNPSA------------MEV-EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp HC------------------------------------CCC----CCTTTC---------------CCCC-----
T ss_pred HHhhhhhhhhhccCccc------------ccc-ccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 7522111000 000000 000 011112349999999999999999999999999999999874
No 7
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.8e-44 Score=328.79 Aligned_cols=289 Identities=41% Similarity=0.696 Sum_probs=240.0
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~ 124 (343)
++...|.++|+||+|++++++.|.+.+.+|+.++.++.+...+++++|||||||||||++|+++|+++ +.+++.+++.+
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45677899999999999999999999999999999888766788999999999999999999999999 89999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
+...+.+.....++.+|..+....|+||||||+|.+++... ......++.+.|+..++++... ..+++||++||.+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--~~~v~vI~atn~~ 159 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--NDGILVLGATNIP 159 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC--CTTEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc--CCCEEEEEecCCc
Confidence 99999999999999999999999999999999999987432 3455678899999999887532 3489999999999
Q ss_pred CCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809 203 WDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273 (343)
Q Consensus 203 ~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~ 273 (343)
+.++++++|||+..+. |..|++.++..... ..+.++..||+.|+||+++||..+|++|...|+++.....+
T Consensus 160 ~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~ 239 (322)
T 1xwi_A 160 WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239 (322)
T ss_dssp TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSE
T ss_pred ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999987776 99999999887643 36788999999999999999999999999999999886544
Q ss_pred ccCCCCCCC----------------CCC---CCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809 274 FTGVNSKPP----------------DGR---NNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK 334 (343)
Q Consensus 274 ~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~ 334 (343)
+......+. ... +..+...+...+. ...|+.+||..|++.++|++++++++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~df~~al~~~~ps~~~~~~~~~~ 312 (322)
T 1xwi_A 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLL-------EPVVSMSDMLRSLSNTKPTVNEHDLLKLK 312 (322)
T ss_dssp EEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBC-------CCCBCHHHHHHHHHTCCCSCCHHHHHHHH
T ss_pred hhhhccccccccccccccccccccccccchhhcccccccccccc-------CCCcCHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 322111000 000 0000011111112 23599999999999999999999999999
Q ss_pred HHHHHhCCC
Q psy7809 335 RWNELYGSR 343 (343)
Q Consensus 335 ~~~~~~~~~ 343 (343)
+|+++||+.
T Consensus 313 ~~~~~~~~~ 321 (322)
T 1xwi_A 313 KFTEDFGQE 321 (322)
T ss_dssp HHHHTTCSC
T ss_pred HHHHHHccC
Confidence 999999974
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-45 Score=345.75 Aligned_cols=246 Identities=35% Similarity=0.514 Sum_probs=219.5
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+.+.|.++|+||+|++++|+.|.+.+.+|+.+|+++... +.+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 3567889999999999999999999999999999999864 789999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
+.++++|.++..++.+|..|...+||||||||+|.++... .......++++.|+..|+++.... +++||+||
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~---~v~vI~aT 318 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST---NVKVIMAT 318 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC---SEEEEEEE
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC---CEEEEEec
Confidence 9999999999999999999999999999999999998742 123345688999999999987644 89999999
Q ss_pred CCCCCCCHHHhc--cccCcch---------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS---------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~---------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
|+|+.||++++| ||+..|. |..||+.+++...+..++|++.||..|+||||+||.++|++|.+.|+++.
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999 9988774 99999999999988899999999999999999999999999999998763
Q ss_pred HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHh-cCCCCCHHHHH
Q psy7809 269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEK-CRKSVDGALIR 331 (343)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~-~~p~~~~~~~~ 331 (343)
.. .|+.+||.+|+.+ ++++.+.+.++
T Consensus 399 ~~-------------------------------------~i~~~d~~~A~~~~~~~~~~~~~~d 425 (428)
T 4b4t_K 399 RY-------------------------------------VILQSDLEEAYATQVKTDNTVDKFD 425 (428)
T ss_dssp CS-------------------------------------SBCHHHHHHHHHHHSCSCCCSSCCC
T ss_pred CC-------------------------------------CCCHHHHHHHHHHhhCccCCccHhh
Confidence 21 2999999999976 45665544433
No 9
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.9e-43 Score=337.86 Aligned_cols=308 Identities=39% Similarity=0.659 Sum_probs=232.3
Q ss_pred CCCCCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHH
Q psy7809 27 KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLA 106 (343)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 106 (343)
+.+.+......+.+.+...++...|..+|++|+|++.+++.|.+.+.+|+.++.++.+...+++++||+||||||||++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 105 EAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp -------------------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred cccccchHHHHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34445556666788888889999999999999999999999999999888888887766678899999999999999999
Q ss_pred HHHHHHh-CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhccc
Q psy7809 107 KAVASQH-GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDG 183 (343)
Q Consensus 107 ~~ia~~l-~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~ 183 (343)
+++|.++ +.+|+.+++.++...+.+.....++.+|..+....|+||||||+|.+++.. .......++.+.|+..+++
T Consensus 185 ~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 185 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp HHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred HHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 9999999 899999999999999888888889999999999999999999999998642 2345567889999999987
Q ss_pred CCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809 184 VGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR 254 (343)
Q Consensus 184 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~ 254 (343)
.... ..+++||++||.++.++++++|||+..+. |..|++.++..... ..+.+++.||..++||+++||.
T Consensus 265 ~~~~--~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~ 342 (444)
T 2zan_A 265 VGVD--NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS 342 (444)
T ss_dssp SSCC--CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccC--CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 6532 34799999999999999999999987765 99999999877643 3678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCCCC-------------------CCCCCCCCCccccCCCCCCcccccHHHHH
Q psy7809 255 DLCQEIILIAAREVIQNAGFTGVNSKPPDGRN-------------------NIGAKGDDSKCQVAPLGSDRIVLNRSHFE 315 (343)
Q Consensus 255 ~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~lt~~df~ 315 (343)
.+|++|+..|+++.....+|...........+ ..+...+...+. ...||.+||.
T Consensus 343 ~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~df~ 415 (444)
T 2zan_A 343 IIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLL-------EPVVSMWDML 415 (444)
T ss_dssp HHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBC-------CCCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhcc-------CCccCHHHHH
Confidence 99999999999998876555432211110000 000011111122 2359999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy7809 316 RAKEKCRKSVDGALIRKYKRWNELYGSR 343 (343)
Q Consensus 316 ~Al~~~~p~~~~~~~~~~~~~~~~~~~~ 343 (343)
.|++.++|++++++++.|++|+++||+.
T Consensus 416 ~a~~~~~ps~~~~~~~~~~~~~~~~~~~ 443 (444)
T 2zan_A 416 RSLSSTKPTVNEQDLLKLKKFTEDFGQE 443 (444)
T ss_dssp HHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999974
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.2e-43 Score=326.89 Aligned_cols=300 Identities=39% Similarity=0.655 Sum_probs=228.6
Q ss_pred ChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 35 NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
...+.+.+...+....+..+|++|+|++.+++.|.+.+..++..+.++.....++.++||+||||||||++|+++|++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 30 NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp -----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 44556667777788899999999999999999999999999888888887777889999999999999999999999999
Q ss_pred CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 115 ~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
.+++.+++.++...+.+.....++.+|..+....|+||||||+|.+... ........++.+.|+..++++... ..+
T Consensus 110 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~--~~~ 187 (355)
T 2qp9_X 110 STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--SQG 187 (355)
T ss_dssp CEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----CC
T ss_pred CCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc--CCC
Confidence 9999999999999999999999999999999999999999999999864 223445677888999999876532 347
Q ss_pred EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILI 263 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~ 263 (343)
++||++||.++.|+++++|||+..+. |..||+.++..... ..+.+++.||..++||+++||..+|++|.+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987776 99999999887643 3678899999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCC----------CCCCC---CCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHH
Q psy7809 264 AAREVIQNAGFTGVNSK----------PPDGR---NNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALI 330 (343)
Q Consensus 264 a~~r~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~ 330 (343)
|+++.....++...... ++... ...+.......+. ...|+.+||..|++.++|+++.+++
T Consensus 268 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~df~~Al~~~~ps~~~~~~ 340 (355)
T 2qp9_X 268 PIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELK-------EPDLTIKDFLKAIKSTRPTVNEDDL 340 (355)
T ss_dssp HHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBC-------CCCBCHHHHHHHHHHSCCSSCHHHH
T ss_pred HHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccc-------cCCccHHHHHHHHHHcCCCCCHHHH
Confidence 99998765443222110 00000 0000011111112 2359999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q psy7809 331 RKYKRWNELYGSR 343 (343)
Q Consensus 331 ~~~~~~~~~~~~~ 343 (343)
+.|++|+++||+.
T Consensus 341 ~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 341 LKQEQFTRDFGQE 353 (355)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHhccC
Confidence 9999999999963
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=7.8e-43 Score=322.76 Aligned_cols=290 Identities=40% Similarity=0.654 Sum_probs=239.4
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.++.+.|..+|++|+|++.+++.|.+.+..+..++.++.....++.++||+||||||||++|+++|++++.+++.+++.+
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 56778999999999999999999999999998888888777778899999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
+...+.+.....++.+|..+....|+||||||+|.+.... .......++.+.++..+++.... ..+++||++||.+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--SQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS--CCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc--CCceEEEEecCCh
Confidence 9999999999999999999999999999999999998742 23445667888999999877432 3479999999999
Q ss_pred CCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809 203 WDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273 (343)
Q Consensus 203 ~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~ 273 (343)
+.|++++++||+..+. |.+|++.++..... ..+.++..||..++||+++||..+|++|...|+++.....+
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999988776 99999999987743 36788999999999999999999999999999999987554
Q ss_pred ccCCCCCCCC----------CCC---CCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q psy7809 274 FTGVNSKPPD----------GRN---NIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELY 340 (343)
Q Consensus 274 ~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~ 340 (343)
+..+...... ... ..........+. ...||.+||.+|++.++|+++.++++.|++|+++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~ 317 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELK-------EPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDF 317 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBC-------CCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccccccccccc-------CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 4333211110 000 000011111112 24599999999999999999999999999999999
Q ss_pred CCC
Q psy7809 341 GSR 343 (343)
Q Consensus 341 ~~~ 343 (343)
|+.
T Consensus 318 ~~~ 320 (322)
T 3eie_A 318 GQE 320 (322)
T ss_dssp C--
T ss_pred cCC
Confidence 973
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.9e-40 Score=301.18 Aligned_cols=283 Identities=33% Similarity=0.544 Sum_probs=231.4
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
++++...|..+|++|+|++++++.|.+.+..++.+++.+... ..++.++||+||||||||++|+++|.+++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 567778899999999999999999999999998888887754 5788999999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809 123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLA 197 (343)
Q Consensus 123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ 197 (343)
.++...+.+.....+..+|..+....|+||||||+|.+.... .......++.+.|+..++++... .+++||+
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~---~~v~vi~ 159 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---KNVFIIG 159 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT---SSEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC---CCEEEEE
Confidence 999888888888889999999999999999999999987521 11233456788899999877543 4799999
Q ss_pred ecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809 198 ATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267 (343)
Q Consensus 198 ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r 267 (343)
+||.++.+++++++ ||+..++ |.+|++.++.......+++++.++..+.||+|+||.++|++|+..|.++
T Consensus 160 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 9987766 8899999998887778899999999999999999999999999999988
Q ss_pred HHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809 268 VIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG 341 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~ 341 (343)
............... .+..... .......|+.+||..|++.++|+++.++++.|++|+++|.
T Consensus 240 ~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 240 SIESEIRRERERQTN---------PSAMEVE---EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHHHC--------------------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhhhhcccc---------ccccccc---ccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 764322110000000 0000000 0011234999999999999999999999999999999983
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5e-40 Score=331.71 Aligned_cols=254 Identities=37% Similarity=0.592 Sum_probs=222.3
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
...+.++|+||+|++++++.|++.+.+|+.+|+++..+ ..+|+|||||||||||||+||+++|++++.+++.+++.++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34577999999999999999999999999999999875 68999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809 127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204 (343)
Q Consensus 127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~ 204 (343)
+++.|+++..++.+|..|..++||||||||+|.|++. ...++...++.++|+..|+++.... +|+||++||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~---~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG---CEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC---CEEEEEecCChhh
Confidence 9999999999999999999999999999999999974 3344566789999999999986644 8999999999999
Q ss_pred CCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccc
Q psy7809 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGF 274 (343)
Q Consensus 205 l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~ 274 (343)
||++++| ||++.|. |.+||+.++.......++++..||..|+||+++||..+|++|.+.|++|.......
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999 9999887 99999999999988899999999999999999999999999999999988752211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 275 TGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
... ... ......+.|+.+||..|++.++|+
T Consensus 433 ~~~-------------~~~-------~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 433 EDE-------------TID-------AEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp TCC-------------CCS-------HHHHHHCEECTTHHHHHHSSSSCC
T ss_pred ccc-------------ccc-------hhhhccceeeHHHHHHHHHhCCCc
Confidence 100 000 000123458999999999999865
No 14
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=7.7e-39 Score=303.43 Aligned_cols=292 Identities=42% Similarity=0.651 Sum_probs=225.5
Q ss_pred CCCCCCCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHH
Q psy7809 25 VPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTL 104 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~ 104 (343)
..+.+.....+..+.+++.+.++.+.++.+|++|+|++.+++.|.+.+..+..++.++.....++.++||+||||||||+
T Consensus 84 ~kd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 163 (389)
T 3vfd_A 84 KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTM 163 (389)
T ss_dssp -------------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHH
T ss_pred cccccccccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHH
Confidence 45566677777788888999999999999999999999999999999988887777776666678899999999999999
Q ss_pred HHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcc
Q psy7809 105 LAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMD 182 (343)
Q Consensus 105 la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~ 182 (343)
+|+++|.+++.+|+.++|.++...+.+.....+..+|..+....|+||||||||.++.... ......++...|+..++
T Consensus 164 la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 164 LAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp HHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999976422 23446778888999888
Q ss_pred cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHH
Q psy7809 183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDI 253 (343)
Q Consensus 183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di 253 (343)
+..... ..+++||++||.++.+++++++||...+. |..||+.++..... ..+.++..|+..+.||++++|
T Consensus 244 ~~~~~~-~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l 322 (389)
T 3vfd_A 244 GVQSAG-DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDL 322 (389)
T ss_dssp HHC------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccccC-CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 765432 44799999999999999999999986665 88999988876532 356678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHH
Q psy7809 254 RDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKY 333 (343)
Q Consensus 254 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~ 333 (343)
..+|+.|+..++++........ . .......|+.+||..|++.++|+++.+.++.|
T Consensus 323 ~~L~~~a~~~~~rel~~~~~~~----------------~---------~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~ 377 (389)
T 3vfd_A 323 TALAKDAALGPIRELKPEQVKN----------------M---------SASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377 (389)
T ss_dssp HHHHHHHTTHHHHTSCCC---C----------------C---------SSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhc----------------c---------chhhcCCcCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999988753210000 0 00011239999999999999999999999999
Q ss_pred HHHHHHhCC
Q psy7809 334 KRWNELYGS 342 (343)
Q Consensus 334 ~~~~~~~~~ 342 (343)
++|.+.||+
T Consensus 378 ~~~~~~~g~ 386 (389)
T 3vfd_A 378 IRWNKDFGD 386 (389)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHhCC
Confidence 999999996
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=296.81 Aligned_cols=288 Identities=39% Similarity=0.634 Sum_probs=236.9
Q ss_pred CCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHH
Q psy7809 30 PNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV 109 (343)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~i 109 (343)
.-...++.+.+.+.+.++.+.++.+|++|+|++.+++.|.+.+..++..+.++.....++.++||+||||||||++|+++
T Consensus 58 ~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 58 RLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred HhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 34455677888888999999999999999999999999999998887777766655577889999999999999999999
Q ss_pred HHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCC
Q psy7809 110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTG 187 (343)
Q Consensus 110 a~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~ 187 (343)
|.+++.+++.+++.++...+.+.....+..+|..+....|+||||||+|.+.... .......++++.++..+++....
T Consensus 138 a~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp HHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred HHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999998742 22445667888899998876533
Q ss_pred CCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809 188 SGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQ 258 (343)
Q Consensus 188 ~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~ 258 (343)
. ..+++||++||.++.+++++++||...+. |.++++.++.... ...+.++..|++.+.||+++||..+|+
T Consensus 218 ~-~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 218 S-EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp C-CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred C-CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 45799999999999999999999986655 8889988887653 235678999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy7809 259 EIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNE 338 (343)
Q Consensus 259 ~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~ 338 (343)
+|+..++++........ .. ......|+.+||..|++.++|+++.++++.|++|.+
T Consensus 297 ~a~~~~ir~l~~~~~~~----------------~~---------~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~ 351 (357)
T 3d8b_A 297 EASLGPIRSLQTADIAT----------------IT---------PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNK 351 (357)
T ss_dssp HHHTHHHHHCCC-----------------------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcc----------------cc---------ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999988643100000 00 001123999999999999999999999999999999
Q ss_pred HhCCC
Q psy7809 339 LYGSR 343 (343)
Q Consensus 339 ~~~~~ 343 (343)
+||+.
T Consensus 352 ~~g~~ 356 (357)
T 3d8b_A 352 TFGCG 356 (357)
T ss_dssp HHSCC
T ss_pred HhCCC
Confidence 99974
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-38 Score=288.03 Aligned_cols=281 Identities=40% Similarity=0.637 Sum_probs=226.8
Q ss_pred hHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.+.+++.+.++.+.++.+|++++|++.+++.|.+.+..+..++.++.+...++.++||+||||||||++|+++|.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 46678888999999999999999999999999999988887777776665678899999999999999999999999999
Q ss_pred eEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc--hhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809 117 FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE--HEATRRVRCELLSHMDGVGTGSGDKGVL 194 (343)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 194 (343)
++.+++.++...+.+.....++.+|..+....|+||||||+|.+...... ......+.+.|+..+++........+++
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 99999999999999988889999999999999999999999999874322 2334567778888888765432234799
Q ss_pred EEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 195 VLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
||++||.++.+++++++||...+. |..|++.++..... ..+.++..++..+.||+++||..+|+.|...++
T Consensus 162 vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp EEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHH
T ss_pred EEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987665 88899888876533 356678999999999999999999999999998
Q ss_pred HHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy7809 266 REVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS 342 (343)
Q Consensus 266 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~~ 342 (343)
++........ ... .. ...|+.+||..|++.++|+++.+.++.|++|.+.||+
T Consensus 242 r~~~~~~~~~----------------~~~--~~-------~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 242 RELNVEQVKC----------------LDI--SA-------MRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp HTCC------------------------C--CC-------CCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HHHhhhhccc----------------ccc--cc-------cCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 8653210000 000 01 1239999999999999999999999999999999996
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=271.73 Aligned_cols=253 Identities=36% Similarity=0.549 Sum_probs=197.3
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
..|.++|+||+|++++++.|.+.+.+++.++..+... +..+.|++|+||||||||+|++++|.+++..++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 4578999999999999999999999999998888754 677889999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809 128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l 205 (343)
.+.+.....+..+|..+....|+++++||+|.++.... ......++.+.++..|++... ...++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~---~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA---RQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS---TTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc---cCCEEEEeecCChhhC
Confidence 88888888999999999888999999999999875321 112234677888888887644 3478999999999999
Q ss_pred CHHHhc--cccCcch--------HHHHHhhhhcC---CCCCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 206 DEALKR--RFEKRIS--------PIQIIGLCLGE---IRKDPNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 206 ~~~l~~--rf~~~i~--------r~~il~~~~~~---~~~~~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
|++++| ||++.++ |.+||+.+++. .....+++++.+|..+ +||||+||..+|++|.+.|+++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 9998887 99999998864 2456789999999975 5999999999999999999987643
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHH
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALI 330 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~ 330 (343)
.... ......+.|+.+||+.|++.++|+++.+++
T Consensus 240 ~~~~--------------------------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 240 RQKS--------------------------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ------------------------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred hccc--------------------------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 1000 001112359999999999999999987764
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.7e-34 Score=259.12 Aligned_cols=256 Identities=34% Similarity=0.568 Sum_probs=204.8
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
+...|...|++++|++++++.|.+.+..+...+..+... ..++.++||+||||||||++|+++|.+++.+++.+++.++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 345778899999999999999999999888888877754 5778899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
...+.+.....+..+|..+....|+||||||+|.+...... .......+..++..++++.. ..+++||+|||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---~~~~~vI~ttn 164 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA---RGDVKIIGATN 164 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS---SSSEEEEEECS
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC---CCCEEEEEeCC
Confidence 99999999999999999999999999999999999864321 22334556666666665543 33799999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
.++.+++++++ ||...+. |.+|++.++.......+.++..++..+.||+++||..+|+.|...|+.+...
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999 9987665 9999999998887778889999999999999999999999999998865321
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhCC
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK--SVDGALIRKYKRWNELYGS 342 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p--~~~~~~~~~~~~~~~~~~~ 342 (343)
. |+.+||.+|++.+.+ +........|..|..+|||
T Consensus 245 ------------------------------~-------I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 245 ------------------------------Y-------VTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp ------------------------------S-------BCHHHHHHHHHHHHHHHCCC----------------
T ss_pred ------------------------------c-------CCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 2 999999999998853 3455678899999999998
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=9.6e-34 Score=274.36 Aligned_cols=251 Identities=37% Similarity=0.611 Sum_probs=212.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH 129 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~ 129 (343)
+..+|++|+|++.+++.|.+.+..++.++.++... ..++.++||+||||||||++|+++|++++.+|+.++|.++...+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999998899888865 57888999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH
Q psy7809 130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE 207 (343)
Q Consensus 130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~ 207 (343)
.+.....+..+|..+....|++|||||||.+.+... ..+...++++.|+..|++.... .+++||++||.++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~---~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT---SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC---CceEEEEecCCccccCH
Confidence 999999999999999999999999999999987432 3456678999999999876543 37999999999999999
Q ss_pred HHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy7809 208 ALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGV 277 (343)
Q Consensus 208 ~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~ 277 (343)
++++ ||...+. |.+||+.++.......+.++..++..+.||+++||..+|++|...|+++........
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~-- 433 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE-- 433 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT--
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc--
Confidence 9999 8887765 999999999988888889999999999999999999999999999998764311000
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 278 NSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
.. .........+.|+.+||..|++.++|+
T Consensus 434 ----------------~~--~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 434 ----------------DE--TIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp ----------------CS--SCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred ----------------cc--ccchhhcccCcCCHHHHHHHHHhCCch
Confidence 00 000001113359999999999999865
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.2e-35 Score=303.99 Aligned_cols=281 Identities=34% Similarity=0.550 Sum_probs=203.7
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+...+...|++++|++++++.|.+.+.++..++..+... ..++.++||+||||||||++|+++|.+++.+++.+++.+
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 4556778999999999999999999999988887776654 577889999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
+...+++.....+..+|..+....|+||||||+|.++.... ......++++.|+..|+++... .+++||+||
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~---~~v~vI~tT 623 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---KNVFIIGAT 623 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------CCBCCCCC
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc---CCeEEEEec
Confidence 99999999999999999999999999999999999987432 2345678999999999987553 389999999
Q ss_pred CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
|.++.||++++| ||+..++ |..||+.++.......+++++.||+.+.|||++||..+|+.|...|+++..
T Consensus 624 N~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~ 703 (806)
T 1ypw_A 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp BSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9998886 999999999988888889999999999999999999999999999998764
Q ss_pred HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809 270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG 341 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~ 341 (343)
............ .+..... ........|+.+||.+|++..+|+++.++++.|++|.+.|+
T Consensus 704 ~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 704 ESEIRRERERQT-----------NPSAMEV-EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp -----------------------------------CCTTTTTTSSCCCCCC---------------------
T ss_pred HHHHhhhhhhcc-----------ccccccc-ccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 321110000000 0000000 00111234999999999999999999999999999999875
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.7e-32 Score=259.58 Aligned_cols=233 Identities=36% Similarity=0.559 Sum_probs=197.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~ 128 (343)
.+..+|+||+|++++++.+.+.+... ..+..+... ...+.++||+||||||||++|+++|.+++.+|+.+++.++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l-~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFL-KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHH-HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHh-hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 56789999999999999999987653 444444433 5778899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
+.+.....++.+|..+....|+||||||+|.+..... ......+.++.|+..++++... .+++||++||.++
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~---~~viVIaaTn~~~ 165 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK---EGIIVMAATNRPD 165 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG---GTEEEEEEESCGG
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC---CCEEEEEecCChh
Confidence 9888888899999999999999999999999986432 2233457888999999876543 3799999999999
Q ss_pred CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809 204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273 (343)
Q Consensus 204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~ 273 (343)
.+++++++ ||+..+. |.+|++.+++...+..++++..+|..+.||+++||.++|++|...|.++...
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~--- 242 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD--- 242 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCC---
Confidence 99999998 9988775 8899999999887778899999999999999999999999999888754211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809 274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK 323 (343)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 323 (343)
. |+.+||..|+..+.+
T Consensus 243 ---------------------------~-------I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 243 ---------------------------K-------ITMKDFEEAIDRVIA 258 (476)
T ss_dssp ---------------------------S-------BCHHHHHHHHHHHC-
T ss_pred ---------------------------e-------ecHHHHHHHHHHHhc
Confidence 2 999999999998864
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.4e-31 Score=239.40 Aligned_cols=236 Identities=34% Similarity=0.546 Sum_probs=195.3
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
..+.+..+|++|+|++.+++.+.+.+.. ...+..+.. +...+.+++|+||||||||++|+++|.+++.+++.+++.++
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 3467789999999999999999887654 333333332 24567899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
...+.+.....+..+|..+....|+++||||+|.+...... .....+..+.++..++++.. ..+++||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~vI~~tn 158 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG---NEGIIVIAATN 158 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS---SSCEEEEEEES
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc---CCCEEEEEeeC
Confidence 98888888888999999999888999999999999764321 22334677888888887654 33799999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
.++.+++++++ ||+..+. |.+|++.++....+..+.++..++..+.||+++||..+|++|...|..+...
T Consensus 159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~ 238 (257)
T 1lv7_A 159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR 238 (257)
T ss_dssp CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999998 8887665 8899999998887778889999999999999999999999999988754311
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK 323 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p 323 (343)
. |+.+||..|++.+..
T Consensus 239 ------------------------------~-------i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 239 ------------------------------V-------VSMVEFEKAKDKIMM 254 (257)
T ss_dssp ------------------------------S-------BCHHHHHHHHHHHTT
T ss_pred ------------------------------c-------ccHHHHHHHHHHHhc
Confidence 2 999999999998753
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=3.9e-31 Score=236.69 Aligned_cols=233 Identities=35% Similarity=0.501 Sum_probs=177.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH 129 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~ 129 (343)
|..+|++++|++++++.+.+.+.. ...+..+.. +...+.++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999988765 333333332 346778999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc------hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE------HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~------~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
.+.....+..+|..+....|+||||||+|.+...... .......+..++..+++... ..+++||+|||.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT---TDHVIVLASTNRAD 156 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT---TCCEEEEEEESCGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC---CCCEEEEecCCChh
Confidence 8888888999999999889999999999999764221 22334567778887776543 34899999999999
Q ss_pred CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcc--cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809 204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNV--DVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN 271 (343)
Q Consensus 204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~--~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~ 271 (343)
.+++++++ ||+..+. |.+|++.++.......+. .+..++..+.||+++||..+|++|...|.++...
T Consensus 157 ~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~- 235 (262)
T 2qz4_A 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT- 235 (262)
T ss_dssp GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------
T ss_pred hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence 99999999 9987665 889999988876554433 3578999999999999999999999888765332
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 272 AGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
. |+.+||..|++.+.++
T Consensus 236 -----------------------------~-------i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 236 -----------------------------S-------VHTLNFEYAVERVLAG 252 (262)
T ss_dssp -------------------------------------CCBCCHHHHHHHHHHH
T ss_pred -----------------------------C-------CCHHHHHHHHHHhccC
Confidence 2 8889999999987543
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=3.1e-30 Score=249.32 Aligned_cols=235 Identities=35% Similarity=0.516 Sum_probs=195.5
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
..+..+|+||+|+++++..+.+.+... ..+..+... ...+.+++|+||||||||+||+++|.+++.+++.+++.++..
T Consensus 24 ~~~~~~f~dv~G~~~~k~~l~~lv~~l-~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 24 EAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 102 (499)
T ss_dssp SCCCCCTTSSCSCHHHHHHHHHHHHHH-HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS
T ss_pred cCCCCCHHHcCCcHHHHHHHHHHHHHh-hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH
Confidence 337889999999999999999887642 334443332 566789999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
.+.+.....+..+|+.+....|+|+||||+|.+..... ......+.++.++..|++... ...+++|++||.|
T Consensus 103 ~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~---~~~viviAatn~p 179 (499)
T 2dhr_A 103 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATNRP 179 (499)
T ss_dssp SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS---SCCCEEEECCSCG
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc---CccEEEEEecCCh
Confidence 88888888889999988777899999999999976422 123345678888888887644 3378999999999
Q ss_pred CCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy7809 203 WDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA 272 (343)
Q Consensus 203 ~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~ 272 (343)
+.||++++| ||+..+. |.+||+.+++...+..++++..+|..+.||+++||.++|++|...|.++..
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~--- 256 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR--- 256 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC---
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---
Confidence 999999998 8988776 899999998888778889999999999999999999999999887764311
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 273 GFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
.. |+.+||..|+..+.+.
T Consensus 257 ---------------------------~~-------It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 257 ---------------------------RK-------ITMKDLEEAADRVMML 274 (499)
T ss_dssp ---------------------------SS-------CCSHHHHHHHHHHTTC
T ss_pred ---------------------------Cc-------cCHHHHHHHHHHHhcc
Confidence 12 8999999999988653
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=1.2e-29 Score=226.43 Aligned_cols=219 Identities=37% Similarity=0.546 Sum_probs=177.4
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
.++...|..+|++++|+++++..+....... ..+..+.. ....+.+++|+||||||||+++++++..++..++.+++.
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 3456778899999999999999998877643 33444333 356678899999999999999999999999999999988
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
++...+.+.....+..+|+.+....|+++++||+|.+..... ......+..+.++..+++... ...++++++
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~---~~~~i~~a~ 160 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAA 160 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT---TCCEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC---CCCEEEEEc
Confidence 887777777777788999988777899999999999875321 123345667788888876543 336899999
Q ss_pred cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809 199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267 (343)
Q Consensus 199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r 267 (343)
+|.|+.+|++++| ||+..+. |.+||+.+.....+..++++..+|..+.||+++||.++|++|...|.++
T Consensus 161 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 161 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 8887776 8999999888777778899999999999999999999999999888754
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=1.8e-31 Score=240.06 Aligned_cols=241 Identities=33% Similarity=0.542 Sum_probs=192.1
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT 126 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~ 126 (343)
.+.+...|++|+|++.+++.+.+.+.. ...+..+... ...+.++||+||||||||++|+++|.+++.+++.+++.++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 356778999999999999999987764 4455555433 46678899999999999999999999999999999999988
Q ss_pred cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc------hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE------HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~------~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
..+.+.....+..+|..+....|+||||||+|.+...... .....+.++.|+..+++.... ..+++||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vi~ttn 159 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE--NAPVIVLAATN 159 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS--CSCCEEEECBS
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC--CCCEEEEEecC
Confidence 8777766666778888888889999999999999763211 111224556777777765432 34689999999
Q ss_pred CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
.++.+++++++ ||...+. |.++|+.++.......+.+++.++..+.||+++||.++|++|...|..+..
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~- 238 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQ- 238 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCC-
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-
Confidence 99999999998 8887776 999999999888777788899999999999999999999998877642210
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHH
Q psy7809 271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGA 328 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~ 328 (343)
.. |+.+||..|++.+.|+...+
T Consensus 239 -----------------------------~~-------i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 239 -----------------------------KE-------VRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -----------------------------CS-------CCHHHHHTSCTTCCCCCC--
T ss_pred -----------------------------CC-------cCHHHHHHHHHHHhhcchhh
Confidence 12 99999999999998885543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=2.8e-28 Score=220.51 Aligned_cols=219 Identities=37% Similarity=0.545 Sum_probs=177.1
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
.++...+..+|++++|++++++.+....... ..+..+.. ....+.+++|+||||||||+|+++++..++..++.+++.
T Consensus 29 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~ 107 (278)
T 1iy2_A 29 RVLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 107 (278)
T ss_dssp CCBCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence 3455568899999999999999998877643 33333333 356677899999999999999999999999999999988
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t 198 (343)
++...+.+.....+..+|+.+....|+++++||+|.+..... ........+..++..+++... ...++++++
T Consensus 108 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~---~~~~i~~a~ 184 (278)
T 1iy2_A 108 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAA 184 (278)
T ss_dssp HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT---TCCEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC---CCCEEEEEe
Confidence 877777777777788999998878899999999998865321 122334566777777765433 346899999
Q ss_pred cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809 199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267 (343)
Q Consensus 199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r 267 (343)
+|.|+.+|+++++ ||+..+. |.+||+.++....+..++++..+|..+.||+++||..+|++|...|.++
T Consensus 185 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 185 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp ESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 8888776 8999999888777778889999999999999999999999998887653
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=8e-27 Score=238.82 Aligned_cols=218 Identities=41% Similarity=0.673 Sum_probs=194.4
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS 127 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~ 127 (343)
..+.++|++|+|++.+++.|.+.+..++.++.++..+ +.++.++||+||||||||++|+++|.+++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 3556899999999999999999999999999988875 678889999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809 128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l 205 (343)
.+.+.....+..+|..+....|+++||||+|.++... .......++...|+..+++.... ..+++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~---~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---AHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT---SCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc---ccEEEecccCCchhc
Confidence 9999999999999999999999999999999998742 23455678888999999877554 379999999999999
Q ss_pred CHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 206 DEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 206 ~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
++++.+ ||...+. |.+|++.++.......+.++..++..+.||+++|+..+|..|...++++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 999998 8877654 999999999988888889999999999999999999999999998887643
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=6.3e-26 Score=206.56 Aligned_cols=183 Identities=21% Similarity=0.228 Sum_probs=135.1
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEccccccc
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFC 161 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~ 161 (343)
..+|.++|||||||||||++|+++|++++.+++.++++++...+.|.....+..+|..+ ....|+||||||||.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 46788999999999999999999999999999999999999999999999999999888 46689999999999998
Q ss_pred CCCCc----hhhhHHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch------HHH
Q psy7809 162 SGSRE----HEATRRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------PIQ 221 (343)
Q Consensus 162 ~~~~~----~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~------r~~ 221 (343)
+.... ......+.+.|+..+++.. ......+++||+|||.++.++++++| ||+..+. |.+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~ 192 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 192 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECCCHHHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCcCHHHHHH
Confidence 73221 1134467788888887443 11224579999999999999999997 8887765 888
Q ss_pred HHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH---HHHHHHHHHHHHHHHhc
Q psy7809 222 IIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD---LCQEIILIAAREVIQNA 272 (343)
Q Consensus 222 il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~---l~~~A~~~a~~r~~~~~ 272 (343)
|++.++.. .+++++.++..++||++++|.. +..+....++++.....
T Consensus 193 Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~ 242 (293)
T 3t15_A 193 VCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT 242 (293)
T ss_dssp HHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98877753 3577999999999999998853 33333444455555433
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=1.6e-23 Score=202.06 Aligned_cols=192 Identities=20% Similarity=0.248 Sum_probs=130.0
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCcccc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTS 127 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~ 127 (343)
.|...|++++|++++++.+..++.. ...+..++.++||+||||||||++|+++|++++ .+|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456689999999999998877643 222335678999999999999999999999999 8999999999999
Q ss_pred ccccchHHHHHHHHHHH---HHcCCcEEEEcccccccCCCCchhh---h------------------HHHHHHHhhhccc
Q psy7809 128 KHYGESEKLVRALFETA---RARAPAVIFIDEVDAFCSGSREHEA---T------------------RRVRCELLSHMDG 183 (343)
Q Consensus 128 ~~~~~~~~~i~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~---~------------------~~~~~~ll~~l~~ 183 (343)
.+.+..+. +..+|..+ ....|+||||||+|.+++....... . .++.+.++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 89999998 7788999999999999974332211 0 1122234444432
Q ss_pred CCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch------------HHHHHhhhhcCCCCCCcccHHHHHHHccCCC
Q psy7809 184 VGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 184 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~------------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s 249 (343)
..... ...++|++|||.++.+++++.+ ||+..+. |.+|++.+.. .+++.++..++|
T Consensus 183 ~~~~~-~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 183 ERVEA-GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp TTCCT-TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred ccCCC-CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 21111 2356667999999999999876 8887322 5666654442 378999999999
Q ss_pred HHHHHHHHHH
Q psy7809 250 GSDIRDLCQE 259 (343)
Q Consensus 250 ~~di~~l~~~ 259 (343)
|+||..+|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999854
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=9.5e-21 Score=173.23 Aligned_cols=205 Identities=20% Similarity=0.239 Sum_probs=153.9
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhc----cCCCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcCCcc
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKG----ILRPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLPSSL 125 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~----~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~~~l 125 (343)
+|+|++.+++.+.+.+..... +..... ...++.++||+||||||||++|+++|+.++ .+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876432 222211 124556899999999999999999999883 38999999999
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC--
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW-- 203 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~-- 203 (343)
...+.+.....+..+|..+ .++||||||+|.++............++.|+..++.. ..++++|+++|.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-----RDDLVVILAGYADRME 182 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-----CCCEEEEEeCChHHHH
Confidence 9999988888888888776 4589999999999865444445667888888888754 23678888888653
Q ss_pred ---CCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHcc-------CCCHHHHHHHHHHHHHHH
Q psy7809 204 ---DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLI-------GYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 204 ---~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~-------g~s~~di~~l~~~A~~~a 264 (343)
.+++++++||...+. +..|++.++...... ++..+..++..+. .-+++++.+++++|+..+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 256899999976665 778888877765322 3334556666532 225899999999999988
Q ss_pred HHHHHH
Q psy7809 265 AREVIQ 270 (343)
Q Consensus 265 ~~r~~~ 270 (343)
..+...
T Consensus 263 ~~r~~~ 268 (309)
T 3syl_A 263 ANRLFT 268 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888775
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.84 E-value=3.2e-20 Score=173.83 Aligned_cols=214 Identities=20% Similarity=0.173 Sum_probs=146.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCccccc
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSK 128 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~l~~~ 128 (343)
|...|++++|++.+++.+..+.... .....++.++||+||||||||++|+++|+.++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 3445999999999998876554321 122245679999999999999999999999975 7778877664433
Q ss_pred cccc-------------------------------------------------hHHHHHHHHHHHHH----c-----CCc
Q psy7809 129 HYGE-------------------------------------------------SEKLVRALFETARA----R-----APA 150 (343)
Q Consensus 129 ~~~~-------------------------------------------------~~~~i~~~~~~a~~----~-----~p~ 150 (343)
+.+. ....+...+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 2221 12223334433322 1 167
Q ss_pred EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec-----------CCCCCCCHHHhccccCcch-
Q psy7809 151 VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT-----------NHPWDLDEALKRRFEKRIS- 218 (343)
Q Consensus 151 il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt-----------n~~~~l~~~l~~rf~~~i~- 218 (343)
||||||+|.+. ....+.|+..++.. ...++++++. |.+..+++++++||.....
T Consensus 192 vl~IDEi~~l~---------~~~~~~L~~~le~~-----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~ 257 (368)
T 3uk6_A 192 VLFIDEVHMLD---------IESFSFLNRALESD-----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT 257 (368)
T ss_dssp EEEEESGGGSB---------HHHHHHHHHHTTCT-----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEEC
T ss_pred eEEEhhccccC---------hHHHHHHHHHhhCc-----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEec
Confidence 99999999883 34566777776543 2245555554 3477899999999866221
Q ss_pred ------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCC
Q psy7809 219 ------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAK 291 (343)
Q Consensus 219 ------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 291 (343)
+..+++..+..... .++..+..++..+.+.+++++.++++.|...|..+..
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~---------------------- 315 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG---------------------- 315 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC----------------------
Confidence 66777766654322 3455678899999845899999999999988865421
Q ss_pred CCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 292 GDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 292 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
.. |+.+|+.+|+..+.
T Consensus 316 --------~~-------It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 316 --------TE-------VQVDDIKRVYSLFL 331 (368)
T ss_dssp --------SS-------BCHHHHHHHHHHSB
T ss_pred --------CC-------CCHHHHHHHHHHhc
Confidence 12 99999999999853
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=6.1e-19 Score=163.34 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=137.6
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+..++.+.+|++++|++.+++.+...+..... ...++.++||+||||||||++|+++|++++.+++.+++..
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 345667778999999999999999988764311 1145578999999999999999999999999999999876
Q ss_pred cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-------------CCCC
Q psy7809 125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-------------SGDK 191 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-------------~~~~ 191 (343)
+.. ...+...+.. ...+++|||||+|.+. ......|+..++..... ....
T Consensus 91 ~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~---------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 91 IEK------SGDLAAILTN--LSEGDILFIDEIHRLS---------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp CCS------HHHHHHHHHT--CCTTCEEEEETGGGCC---------HHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ccc------hhHHHHHHHh--ccCCCEEEEechhhcC---------HHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 531 1223333332 2356899999999883 24555666666543210 0011
Q ss_pred CEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809 192 GVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIIL 262 (343)
Q Consensus 192 ~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~ 262 (343)
++++|++||....+++++++||+..+. +..+++..+...... ++..+..++..+.| +++++.++++.|..
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD 232 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 489999999999999999999866554 667777766654322 34456778887766 67888888888776
Q ss_pred HHH
Q psy7809 263 IAA 265 (343)
Q Consensus 263 ~a~ 265 (343)
.+.
T Consensus 233 ~a~ 235 (338)
T 3pfi_A 233 FAD 235 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=3.6e-19 Score=162.49 Aligned_cols=236 Identities=19% Similarity=0.264 Sum_probs=152.4
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGE 132 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~ 132 (343)
++++|++++++.+...+..+.....+... ....+.++||+||||||||++|+++++.++.+++.+++.++.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 35899999999998877542111111000 0135679999999999999999999999999999999988765 44443
Q ss_pred h-HHHHHHHHHHH-----HHcCCcEEEEcccccccCCCC---chhhhHHHHHHHhhhcccCCC-----CCCCCCEEEEEe
Q psy7809 133 S-EKLVRALFETA-----RARAPAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDGVGT-----GSGDKGVLVLAA 198 (343)
Q Consensus 133 ~-~~~i~~~~~~a-----~~~~p~il~iDeid~l~~~~~---~~~~~~~~~~~ll~~l~~~~~-----~~~~~~v~vI~t 198 (343)
. ...+..++..+ ....++||||||+|.+..... .......+.+.|+..+++... .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 33455555422 112357999999999976431 122223346777777764310 001236788888
Q ss_pred ----cCCCCCCCHHHhccccCcch--------HHHHHhhhh-----------cCCC---CCCcccHHHHHHHcc------
Q psy7809 199 ----TNHPWDLDEALKRRFEKRIS--------PIQIIGLCL-----------GEIR---KDPNVDVATLSKQLI------ 246 (343)
Q Consensus 199 ----tn~~~~l~~~l~~rf~~~i~--------r~~il~~~~-----------~~~~---~~~~~~~~~la~~t~------ 246 (343)
++.+..+++++++||+..+. +..|++... .... ..++..++.|+..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 254 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT 254 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccc
Confidence 45778899999999985554 555555211 0111 123445677777762
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 247 -GYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 247 -g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
+.+.+.+.+++++++..+..+... .....+.|+.+|+.+|++...
T Consensus 255 ~~g~~R~l~~~l~~~~~~~~~~~~~-------------------------------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 255 ENIGARRLHTVMERLMDKISFSASD-------------------------------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCCTTHHHHHHHHHHSHHHHHHGGG-------------------------------CTTCEEEECHHHHHHHTCSSS
T ss_pred cccCcHHHHHHHHHHHHhhhcCCcc-------------------------------ccCCEEEEeeHHHHHHHHhhh
Confidence 457899999999887765543321 111234599999999998764
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=5.7e-19 Score=158.73 Aligned_cols=172 Identities=17% Similarity=0.209 Sum_probs=124.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR 165 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~ 165 (343)
.++.++||+||||||||++|+++|+.++.+++.+++.+... .........+..+|..+....+++|||||+|.+++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 56679999999999999999999999999999998765332 22222335677888888777789999999999976322
Q ss_pred -chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH-HHhccccCcch------HHHHHhhhhcCCCCCCccc
Q psy7809 166 -EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE-ALKRRFEKRIS------PIQIIGLCLGEIRKDPNVD 237 (343)
Q Consensus 166 -~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~-~l~~rf~~~i~------r~~il~~~~~~~~~~~~~~ 237 (343)
.......++..|...++..... ..+++||+|||.++.+++ .+.+||...+. |.+|...+..... ..+.+
T Consensus 142 ~~~~~~~~~l~~L~~~~~~~~~~--~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-~~~~~ 218 (272)
T 1d2n_A 142 IGPRFSNLVLQALLVLLKKAPPQ--GRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-FKDKE 218 (272)
T ss_dssp TTTBCCHHHHHHHHHHTTCCCST--TCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-SCHHH
T ss_pred CChhHHHHHHHHHHHHhcCccCC--CCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-CCHHH
Confidence 2223445666666666554321 347889999999988887 67778877665 6777766654433 35667
Q ss_pred HHHHHHHccCC----CHHHHHHHHHHHH
Q psy7809 238 VATLSKQLIGY----SGSDIRDLCQEII 261 (343)
Q Consensus 238 ~~~la~~t~g~----s~~di~~l~~~A~ 261 (343)
+..++..+.|| +.+++.++++.|.
T Consensus 219 ~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 219 RTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp HHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 88999999997 5666666665543
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=5.7e-19 Score=173.47 Aligned_cols=202 Identities=23% Similarity=0.284 Sum_probs=129.7
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc--------
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-------- 127 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-------- 127 (343)
++++|++++++.+.+.+........ .++.+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence 4689999999999877654321111 25668999999999999999999999999999999876543
Q ss_pred -ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC----------CCCCEEEE
Q psy7809 128 -KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS----------GDKGVLVL 196 (343)
Q Consensus 128 -~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~----------~~~~v~vI 196 (343)
.+.+.....+...|..+....| ||||||+|.+..... ....+.|+..++...... ...+++||
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp ---------CHHHHHHTTCSSSE-EEEEEESSSCC--------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-----cCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 3444444555666666655554 999999999965321 124567777776422110 01478999
Q ss_pred EecCCCCCCCHHHhccccCcch--------HHHHHhhhhcC-----CCCC------CcccHHHHHHHcc-CCCHHHHHHH
Q psy7809 197 AATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGE-----IRKD------PNVDVATLSKQLI-GYSGSDIRDL 256 (343)
Q Consensus 197 ~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~-----~~~~------~~~~~~~la~~t~-g~s~~di~~l 256 (343)
+|||.++.+++++++||. .+. +..|++.++.. .... ++..+..++.... ....++|++.
T Consensus 229 ~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~ 307 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQ 307 (543)
T ss_dssp EECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHH
T ss_pred eccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHH
Confidence 999999999999999995 343 66777766522 1111 2333455555333 2456888888
Q ss_pred HHHHHHHHHHHHHH
Q psy7809 257 CQEIILIAAREVIQ 270 (343)
Q Consensus 257 ~~~A~~~a~~r~~~ 270 (343)
+++++..+..+...
T Consensus 308 i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 308 LAAICRKAAKAIVA 321 (543)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88887777766654
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=5e-18 Score=156.09 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=131.9
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~ 128 (343)
+..+.+|++++|.+..++.+...+.... .....+.+++|+||||||||++|+++++.++.+++.+++..+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAK-------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------HHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHH-------ccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 4566789999999999999988775321 01134578999999999999999999999999999999876532
Q ss_pred cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC--------CCCCEEE
Q psy7809 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS--------GDKGVLV 195 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~--------~~~~v~v 195 (343)
...+...+..+ ...+++|||||+|.+.. .....|+..++... ... ...++.+
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~---------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSR---------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCH---------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCccccc---------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11222222210 13568999999998832 23344444444321 000 0125789
Q ss_pred EEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809 196 LAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIA 264 (343)
Q Consensus 196 I~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a 264 (343)
|++||.+..+++.+.+||...+. +..+++.++..... .++..+..++..+.| +++++.++++.+...+
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999965544 56677666654422 244557889999877 5788888887665443
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=4.8e-18 Score=162.80 Aligned_cols=184 Identities=20% Similarity=0.294 Sum_probs=126.9
Q ss_pred ccccccCCCCCCCcccccHHHH---HHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVK---QIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++..+..+.+|++++|++.++ +.|...+... ...++||+||||||||++|+++++.++.+++.+
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4555667788999999999999 6777666532 236899999999999999999999999999999
Q ss_pred cCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809 121 LPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVL 196 (343)
Q Consensus 121 ~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI 196 (343)
++.... ...++.++..+. ...++||||||+|.+.. .....|+..++. ..+++|
T Consensus 82 ~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------~~q~~LL~~le~-------~~v~lI 138 (447)
T 3pvs_A 82 SAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------SQQDAFLPHIED-------GTITFI 138 (447)
T ss_dssp ETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------CCHHHHHT-------TSCEEE
T ss_pred EeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------HHHHHHHHHHhc-------CceEEE
Confidence 864422 223444554443 34578999999999843 234466777763 245666
Q ss_pred Eec--CCCCCCCHHHhccccCcch-------HHHHHhhhhcCC--------CCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809 197 AAT--NHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEI--------RKDPNVDVATLSKQLIGYSGSDIRDLCQE 259 (343)
Q Consensus 197 ~tt--n~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~--------~~~~~~~~~~la~~t~g~s~~di~~l~~~ 259 (343)
++| |....+++++++|+..... ...+++..+... ...++..++.|+..+.| +.+.+.++++.
T Consensus 139 ~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 139 GATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp EEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred ecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 655 3445789999998764332 666676666542 11234457788888776 67888888777
Q ss_pred HHHH
Q psy7809 260 IILI 263 (343)
Q Consensus 260 A~~~ 263 (343)
|...
T Consensus 218 a~~~ 221 (447)
T 3pvs_A 218 MADM 221 (447)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 39
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.75 E-value=2e-17 Score=157.02 Aligned_cols=245 Identities=18% Similarity=0.284 Sum_probs=159.3
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGE 132 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~ 132 (343)
++|+|++++|+.|...+..+..+..++... ..++.++||+||||||||++|+++|..++.+|+.+++..+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 368999999999998887665444433322 135689999999999999999999999999999999988877 46764
Q ss_pred -hHHHHHHHHHHHH------------------------------------------------------------------
Q psy7809 133 -SEKLVRALFETAR------------------------------------------------------------------ 145 (343)
Q Consensus 133 -~~~~i~~~~~~a~------------------------------------------------------------------ 145 (343)
....++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 4555555544330
Q ss_pred -----------------------------------------------------------------------Hc--CCcEE
Q psy7809 146 -----------------------------------------------------------------------AR--APAVI 152 (343)
Q Consensus 146 -----------------------------------------------------------------------~~--~p~il 152 (343)
.. ..++|
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 00 12489
Q ss_pred EEcccccccCCCC--chh-hhHHHHHHHhhhcccCCCC-----CCCCCEEEEEec----CCCCCCCHHHhccccCcch--
Q psy7809 153 FIDEVDAFCSGSR--EHE-ATRRVRCELLSHMDGVGTG-----SGDKGVLVLAAT----NHPWDLDEALKRRFEKRIS-- 218 (343)
Q Consensus 153 ~iDeid~l~~~~~--~~~-~~~~~~~~ll~~l~~~~~~-----~~~~~v~vI~tt----n~~~~l~~~l~~rf~~~i~-- 218 (343)
++||+|+++.... ..+ ....++..|+..+++.... -..+++++|+|. +.+.++-|.+++||+.++.
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~ 334 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 334 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence 9999999986422 222 2234778899999863211 013478999987 3455566899999998765
Q ss_pred ---HHHHHhhhh-----------cCC---C---CCCcccHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809 219 ---PIQIIGLCL-----------GEI---R---KDPNVDVATLSKQ-------LIGYSGSDIRDLCQEIILIAAREVIQN 271 (343)
Q Consensus 219 ---r~~il~~~~-----------~~~---~---~~~~~~~~~la~~-------t~g~s~~di~~l~~~A~~~a~~r~~~~ 271 (343)
..+++++.. ..+ . ..++..+..|++. |...-.+.|+.++.+++..+..+...
T Consensus 335 ~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~- 413 (444)
T 1g41_A 335 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD- 413 (444)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG-
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccc-
Confidence 333333321 111 0 0133345566653 34555788888887777666655432
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809 272 AGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK 334 (343)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~ 334 (343)
.....+.|+.+++.+.+. |.+..+++.+|.
T Consensus 414 ------------------------------~~~~~~~i~~~~v~~~l~---~~~~~~dl~~~~ 443 (444)
T 1g41_A 414 ------------------------------MNGQTVNIDAAYVADALG---EVVENEDLSRFI 443 (444)
T ss_dssp ------------------------------CTTCEEEECHHHHHHHHT---TTTTCHHHHHHH
T ss_pred ------------------------------cCCCeEEEeHHHHHHhcC---ccccCCChhccc
Confidence 112345699999987765 446677887774
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.74 E-value=1.6e-17 Score=143.37 Aligned_cols=183 Identities=21% Similarity=0.169 Sum_probs=123.8
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEE
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNV 120 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v 120 (343)
+..+.++..|++++|.+..++.+...+... ...+++|+||+|+|||++++++++++ ...++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 445677889999999999999999888642 23359999999999999999999886 3457777
Q ss_pred cCCccccccccchHHHHHHHHHHHH------HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809 121 LPSSLTSKHYGESEKLVRALFETAR------ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL 194 (343)
Q Consensus 121 ~~~~l~~~~~~~~~~~i~~~~~~a~------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 194 (343)
++...... ..+...+.... ...+.+|+|||+|.+.. .....|+..++.. ..++.
T Consensus 75 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~~~~~l~~~l~~~-----~~~~~ 134 (226)
T 2chg_A 75 NASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------DAQAALRRTMEMY-----SKSCR 134 (226)
T ss_dssp ETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------HHHHHHHHHHHHT-----TTTEE
T ss_pred ccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------HHHHHHHHHHHhc-----CCCCe
Confidence 76543321 12222222222 14578999999998832 2344555555543 23678
Q ss_pred EEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809 195 VLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIIL 262 (343)
Q Consensus 195 vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~ 262 (343)
+|+++|.+..+++.+.+||. .+. ...++...+..... .++..+..++..+.| +++.+.++++.+..
T Consensus 135 ~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA 209 (226)
T ss_dssp EEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 89999999999999999876 333 44555555543222 234456788888866 57776666665543
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=1.7e-17 Score=159.06 Aligned_cols=194 Identities=13% Similarity=0.209 Sum_probs=122.9
Q ss_pred CCCCCCCccc-cc--HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809 50 DTGVGWDDIA-GL--DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL 121 (343)
Q Consensus 50 ~~~~~~~~l~-G~--~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~ 121 (343)
.+..+|++++ |. ......+..+...+. . +.+++|+||||+|||+|++++++++ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHPG----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHSTT----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCCC----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3456899987 53 344445554444321 2 5789999999999999999999988 78899998
Q ss_pred CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
+.++...............|.......++||||||+|.+.... .....|+..++.... ....+||++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------~~q~~l~~~l~~l~~---~~~~iIitt~~~ 237 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------GVQTELFHTFNELHD---SGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------HHHHHHHHHHHHHHT---TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHH---CCCeEEEEECCC
Confidence 8776443222211111112332222267899999999985421 122233333332221 124555655555
Q ss_pred CCC---CCHHHhcccc--Ccch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 202 PWD---LDEALKRRFE--KRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 202 ~~~---l~~~l~~rf~--~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
+.. +++.+++||. ..+. |..|++..+..... .++..+..||..+.| +.+++..+++.+...|.
T Consensus 238 ~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 238 PQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp GGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 554 7899999985 2232 77888877754322 233447899999977 79999999998877764
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=7.4e-18 Score=157.76 Aligned_cols=212 Identities=19% Similarity=0.255 Sum_probs=137.4
Q ss_pred cccccHHHHHHHHHHHhccccChHHH---hccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc-cccc
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLF---KGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK-HYGE 132 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~---~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~-~~~~ 132 (343)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|..++.+|+.++|.++... ++|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998875322111110 0111356789999999999999999999999999999999887754 5555
Q ss_pred h-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCC---------------
Q psy7809 133 S-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTG--------------- 187 (343)
Q Consensus 133 ~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~--------------- 187 (343)
. ...+..+|..+ ....++||||||+|.+...... ......+++.|+..|++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 44566666654 3345689999999999864222 122234888999988843100
Q ss_pred -CCCCCEEEEEecCCC----------CC-----------------------------------CCHHHhccccCcch---
Q psy7809 188 -SGDKGVLVLAATNHP----------WD-----------------------------------LDEALKRRFEKRIS--- 218 (343)
Q Consensus 188 -~~~~~v~vI~ttn~~----------~~-----------------------------------l~~~l~~rf~~~i~--- 218 (343)
-...++++|++++.. .. +.+.+++||+..+.
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 012345566666532 11 67888899887774
Q ss_pred -----HHHHHhh----hh-------cCCCC---CCcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809 219 -----PIQIIGL----CL-------GEIRK---DPNVDVATLSKQ--LIGYSGSDIRDLCQEIILIAAREV 268 (343)
Q Consensus 219 -----r~~il~~----~~-------~~~~~---~~~~~~~~la~~--t~g~s~~di~~l~~~A~~~a~~r~ 268 (343)
+.+|+.. ++ ..... .++..++.|+.. ...+..++|++++++++..++.+.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 4445543 11 11111 133345667653 345567999999999888877654
No 43
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=6.1e-17 Score=165.52 Aligned_cols=243 Identities=21% Similarity=0.243 Sum_probs=165.4
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---------- 113 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------- 113 (343)
..+.....+..|++++|.++.++.+.+.+.. ....++||+||||||||++|++++..+
T Consensus 174 ~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~ 241 (758)
T 1r6b_X 174 TNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241 (758)
T ss_dssp CBHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGT
T ss_pred HhHHHHHhcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 3344445566899999999999998887753 345789999999999999999999887
Q ss_pred CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCC
Q psy7809 114 GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDK 191 (343)
Q Consensus 114 ~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 191 (343)
+..++.+++..+. ..+.+..+..+..+|..+....++||||||+|.+++............+.|...++ ..
T Consensus 242 ~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-------~~ 314 (758)
T 1r6b_X 242 DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-------SG 314 (758)
T ss_dssp TCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-------SC
T ss_pred CCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-------CC
Confidence 5678888877776 35677888889999998887778999999999998754332223334444444443 23
Q ss_pred CEEEEEecCCC-----CCCCHHHhccccCcch--------HHHHHhhhhcCC----C-CCCcccHHHHHHHccCC-----
Q psy7809 192 GVLVLAATNHP-----WDLDEALKRRFEKRIS--------PIQIIGLCLGEI----R-KDPNVDVATLSKQLIGY----- 248 (343)
Q Consensus 192 ~v~vI~ttn~~-----~~l~~~l~~rf~~~i~--------r~~il~~~~~~~----~-~~~~~~~~~la~~t~g~----- 248 (343)
.+.+|++|+.+ ..+++++.+||.. +. +.+|++.+.... . ...+..+..++..+.||
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~~-i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHhCceE-EEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence 67888888864 3577899999983 33 777787766441 1 12344566777776654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC----CC
Q psy7809 249 SGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR----KS 324 (343)
Q Consensus 249 s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~----p~ 324 (343)
.+..+.+++++|...+..+ . .......|+.+|+..++.... +.
T Consensus 394 lp~~~i~lld~a~~~~~~~--~-------------------------------~~~~~~~v~~~di~~~~~~~~~ip~~~ 440 (758)
T 1r6b_X 394 LPDKAIDVIDEAGARARLM--P-------------------------------VSKRKKTVNVADIESVVARIARIPEKS 440 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHS--S-------------------------------SCCCCCSCCHHHHHHHHHHHSCCCCCC
T ss_pred CchHHHHHHHHHHHHHhcc--c-------------------------------ccccCCccCHHHHHHHHHHhcCCCccc
Confidence 5667788888776443211 0 000112389999999998864 24
Q ss_pred CCHHHHHHHHHHHHH
Q psy7809 325 VDGALIRKYKRWNEL 339 (343)
Q Consensus 325 ~~~~~~~~~~~~~~~ 339 (343)
+.+++...+....+.
T Consensus 441 ~~~~~~~~l~~l~~~ 455 (758)
T 1r6b_X 441 VSQSDRDTLKNLGDR 455 (758)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 556666666655543
No 44
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.73 E-value=1.5e-16 Score=149.29 Aligned_cols=196 Identities=17% Similarity=0.081 Sum_probs=130.6
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS 124 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~ 124 (343)
..++++|.+..++.+...+..... ...+.+++|+||||||||++++++++.+ +..+++++|..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 347899999999999987743211 1456789999999999999999999988 78899999876
Q ss_pred ccccc----------------ccc-hHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809 125 LTSKH----------------YGE-SEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 125 l~~~~----------------~~~-~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
..... .+. ....+..++...... .|.||+|||+|.+.... .....+..++..++....
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----GGQDLLYRITRINQELGD 164 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----THHHHHHHHHHGGGCC--
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----CCChHHHhHhhchhhcCC
Confidence 43211 111 223344444444333 37799999999985321 133455566665543321
Q ss_pred CCCCCCEEEEEecCCC---CCCCHHHhccccC-cch--------HHHHHhhhhcC---CCCCCcccHHHHHHHcc---CC
Q psy7809 187 GSGDKGVLVLAATNHP---WDLDEALKRRFEK-RIS--------PIQIIGLCLGE---IRKDPNVDVATLSKQLI---GY 248 (343)
Q Consensus 187 ~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~--------r~~il~~~~~~---~~~~~~~~~~~la~~t~---g~ 248 (343)
..++.+|++||.+ +.+++.+.+||.. .+. ...+++..+.. ....++..+..++..+. |
T Consensus 165 ---~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G- 240 (387)
T 2v1u_A 165 ---RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG- 240 (387)
T ss_dssp ------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-
T ss_pred ---CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-
Confidence 2267899999887 6789999999865 333 55666665543 11223445778888887 6
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy7809 249 SGSDIRDLCQEIILIAA 265 (343)
Q Consensus 249 s~~di~~l~~~A~~~a~ 265 (343)
.++.+.++++.|...|.
T Consensus 241 ~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 241 DARRALDLLRVAGEIAE 257 (387)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 57888888988876665
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=2.2e-17 Score=144.36 Aligned_cols=191 Identities=21% Similarity=0.175 Sum_probs=125.4
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE--cC
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV--LP 122 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v--~~ 122 (343)
.+..++.+..|++++|.+..++.+...+... ..+..++|+||+|+|||++++++++.+....... .+
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3456677888999999999999999887532 3345799999999999999999998875422110 00
Q ss_pred --------------Ccccccc--ccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 123 --------------SSLTSKH--YGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 123 --------------~~l~~~~--~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
.++.... .......+..++..+. ...+.+|+|||+|.+. ......|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~---------~~~~~~l~~~l~ 151 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------RHSFNALLKTLE 151 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC---------HHHHHHHHHHHH
T ss_pred cccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc---------HHHHHHHHHHHh
Confidence 0000000 0112233444444332 2246899999999872 234556666665
Q ss_pred cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809 183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR 254 (343)
Q Consensus 183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~ 254 (343)
.. ..++.+|++|+.+..+++.+.+|+...-. ..++++..+..... .++..+..+++.+.| +++.+.
T Consensus 152 ~~-----~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~ 225 (250)
T 1njg_A 152 EP-----PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDAL 225 (250)
T ss_dssp SC-----CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHH
T ss_pred cC-----CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 43 33688999999988899999887522111 55666665544322 234557889999988 799999
Q ss_pred HHHHHHH
Q psy7809 255 DLCQEII 261 (343)
Q Consensus 255 ~l~~~A~ 261 (343)
++++.|+
T Consensus 226 ~~~~~~~ 232 (250)
T 1njg_A 226 SLTDQAI 232 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888763
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.71 E-value=6.3e-17 Score=148.93 Aligned_cols=183 Identities=21% Similarity=0.120 Sum_probs=126.3
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.+.+++.+.+|++++|++++++.+...+... ..+..+|++||||||||++|+++|++++.+++++++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 5667788899999999999999999888632 34567788899999999999999999999999999866
Q ss_pred cccccccchHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 125 LTSKHYGESEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 125 l~~~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
.. ...+...+...... .+.||||||+|.+.+ ....+.|+..++... .++.+|++|
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------~~~~~~L~~~le~~~-----~~~~iI~~~ 143 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------AESQRHLRSFMEAYS-----SNCSIIITA 143 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------HHHHHHHHHHHHHHG-----GGCEEEEEE
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------HHHHHHHHHHHHhCC-----CCcEEEEEe
Confidence 32 23344444433332 467999999998831 234556666666442 357899999
Q ss_pred CCCCCCCHHHhccccCcch--------HHHHHhhhhc-------CCCC-CCc-ccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 200 NHPWDLDEALKRRFEKRIS--------PIQIIGLCLG-------EIRK-DPN-VDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 200 n~~~~l~~~l~~rf~~~i~--------r~~il~~~~~-------~~~~-~~~-~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
|.+..+++++++||.. +. |..|++.++. .... .++ ..++.++..+.|. .+++.+.++.+
T Consensus 144 n~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd-~R~a~~~L~~~ 219 (324)
T 3u61_B 144 NNIDGIIKPLQSRCRV-ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD-FRKTIGELDSY 219 (324)
T ss_dssp SSGGGSCTTHHHHSEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC-TTHHHHHHHHH
T ss_pred CCccccCHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 9999999999998753 32 3333333221 1111 223 5577888887663 34444444433
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.71 E-value=2.6e-16 Score=144.88 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=122.6
Q ss_pred CCCCCCCccc-c--cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 50 DTGVGWDDIA-G--LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 50 ~~~~~~~~l~-G--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
.+..+|++++ | .......+...+..+. ..+.+++|+||||||||++++++++.+ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3456899987 4 4455555665554331 245789999999999999999999998 8899999987
Q ss_pred ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809 124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW 203 (343)
Q Consensus 124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~ 203 (343)
++.....+.........|.... ..+++|||||+|.+.... .....++..++.... ....+|+++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~~---~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLYL---LEKQIILASDRHPQ 143 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHHH---TTCEEEEEESSCGG
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHHH---CCCeEEEEecCChH
Confidence 7654433222211112222222 247899999999985311 112223333322211 12456677776665
Q ss_pred ---CCCHHHhccccCcc------h---HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809 204 ---DLDEALKRRFEKRI------S---PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILI 263 (343)
Q Consensus 204 ---~l~~~l~~rf~~~i------~---r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~ 263 (343)
.+++.+.+||.... . +..+++..+..... .++..++.|+..+ | +.+++..+++.+...
T Consensus 144 ~l~~l~~~L~sR~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 144 KLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GCTTSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhhhcccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 68899999885311 1 77788877764422 2445578899999 6 688888888887766
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.4e-16 Score=146.35 Aligned_cols=187 Identities=18% Similarity=0.155 Sum_probs=125.2
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC------Cce
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG------STF 117 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~------~~~ 117 (343)
..+..++.+..|++++|++++++.+...+... ...+++|+||||+|||++|+++++.++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 35667788999999999999999998877532 223599999999999999999998864 457
Q ss_pred EEEcCCccccccccchHHHHHHHHHHHHH----------------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhc
Q psy7809 118 FNVLPSSLTSKHYGESEKLVRALFETARA----------------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHM 181 (343)
Q Consensus 118 ~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----------------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l 181 (343)
..+++.+.... ..+...+..... ..+.||+|||+|.+.. ...+.|+..+
T Consensus 93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------~~~~~Ll~~l 157 (353)
T 1sxj_D 93 LELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------DAQSALRRTM 157 (353)
T ss_dssp EEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------HHHHHHHHHH
T ss_pred EEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------HHHHHHHHHH
Confidence 78887664221 112221111111 2345999999998832 3445666766
Q ss_pred ccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHH
Q psy7809 182 DGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDI 253 (343)
Q Consensus 182 ~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di 253 (343)
+... ....+|+++|.+..+.+.+++|+..... ...++...+.... ..++..+..++..+.| +.+.+
T Consensus 158 e~~~-----~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~ 231 (353)
T 1sxj_D 158 ETYS-----GVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRG 231 (353)
T ss_dssp HHTT-----TTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHH
T ss_pred HhcC-----CCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 6542 2566777889999999999998763211 4455555443332 2345567889999987 46666
Q ss_pred HHHHHHHHHH
Q psy7809 254 RDLCQEIILI 263 (343)
Q Consensus 254 ~~l~~~A~~~ 263 (343)
.++++.+...
T Consensus 232 ~~~l~~~~~~ 241 (353)
T 1sxj_D 232 ITLLQSASKG 241 (353)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.70 E-value=3.3e-16 Score=137.20 Aligned_cols=181 Identities=16% Similarity=0.106 Sum_probs=117.9
Q ss_pred CCCCCcccc---cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCcc
Q psy7809 52 GVGWDDIAG---LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSL 125 (343)
Q Consensus 52 ~~~~~~l~G---~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l 125 (343)
..+|++++| .+.+.+.+...+.. ..+.+++|+||||||||++|++++.++. ..++++++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 478899886 35677777766643 2457899999999999999999998874 67888888776
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE-EEEEecCCCC-
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV-LVLAATNHPW- 203 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v-~vI~ttn~~~- 203 (343)
........ . ....+.+|+|||+|.+.... .....|+..++..... ..+ +|++++..+.
T Consensus 92 ~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~-------~~~~~l~~~l~~~~~~---~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 92 ASISTALL--------E--GLEQFDLICIDDVDAVAGHP-------LWEEAIFDLYNRVAEQ---KRGSLIVSASASPME 151 (242)
T ss_dssp GGSCGGGG--------T--TGGGSSEEEEETGGGGTTCH-------HHHHHHHHHHHHHHHH---CSCEEEEEESSCTTT
T ss_pred HHHHHHHH--------H--hccCCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHc---CCCeEEEEcCCCHHH
Confidence 65432111 1 11346899999999884311 1122333333322111 133 4555544444
Q ss_pred --CCCHHHhcccc--Ccch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809 204 --DLDEALKRRFE--KRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 204 --~l~~~l~~rf~--~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~ 265 (343)
.+++.+.+||. ..+. +.+++...+..... .++..++.++..+.| +.+++.++++.|...|.
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 45688888874 3332 77788777754422 244557789998877 78999999998887764
No 50
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.69 E-value=2e-17 Score=139.10 Aligned_cols=151 Identities=23% Similarity=0.322 Sum_probs=106.7
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CC
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GS 115 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~ 115 (343)
+..+..+..|++++|.+...+.+.+.+.. ....+++|+||+|||||++|+++++.+ +.
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~ 79 (187)
T 2p65_A 12 LTALARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGR 79 (187)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTC
T ss_pred HHHHHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCC
Confidence 33445567899999999999988887743 235689999999999999999999987 67
Q ss_pred ceEEEcCCcccc--ccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 116 TFFNVLPSSLTS--KHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 116 ~~~~v~~~~l~~--~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
+++.+++..+.. .+.+.....+..++..+... .|.+|+|||+|.+............+.+.|...++. ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~-------~~ 152 (187)
T 2p65_A 80 KLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR-------GE 152 (187)
T ss_dssp EEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-------TC
T ss_pred eEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-------CC
Confidence 888888766542 23444555677777776655 678999999999974322111112233334344332 25
Q ss_pred EEEEEecCCCC-----CCCHHHhccccC
Q psy7809 193 VLVLAATNHPW-----DLDEALKRRFEK 215 (343)
Q Consensus 193 v~vI~ttn~~~-----~l~~~l~~rf~~ 215 (343)
+++|+++|.+. .+++++++||..
T Consensus 153 ~~ii~~~~~~~~~~~~~~~~~l~~R~~~ 180 (187)
T 2p65_A 153 LRCIGATTVSEYRQFIEKDKALERRFQQ 180 (187)
T ss_dssp SCEEEEECHHHHHHHTTTCHHHHHHEEE
T ss_pred eeEEEecCHHHHHHHHhccHHHHHhcCc
Confidence 77888888764 689999999874
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=1.1e-16 Score=154.59 Aligned_cols=192 Identities=22% Similarity=0.235 Sum_probs=133.1
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---- 113 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---- 113 (343)
..+.....+.....+..|++++|.+..++.+...+.. ....++||+||||||||++|+++|..+
T Consensus 162 ~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~ 229 (468)
T 3pxg_A 162 TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE 229 (468)
T ss_dssp HHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 3445556666777788999999999999999888754 234689999999999999999999997
Q ss_pred ------CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC
Q psy7809 114 ------GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG 187 (343)
Q Consensus 114 ------~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~ 187 (343)
+.+++.+++. ..+.|.....+..+|..+....+.||||| . .....+.|+..++
T Consensus 230 ~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~-------~~~a~~~L~~~L~----- 288 (468)
T 3pxg_A 230 VPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A-------AIDASNILKPSLA----- 288 (468)
T ss_dssp SCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C---------------CCCTT-----
T ss_pred CChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C-------chhHHHHHHHhhc-----
Confidence 7788888877 55566666678889999988889999999 1 1123445555554
Q ss_pred CCCCCEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcCC-----CCCCcccHHHHHHHccCCC
Q psy7809 188 SGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGEI-----RKDPNVDVATLSKQLIGYS 249 (343)
Q Consensus 188 ~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~~-----~~~~~~~~~~la~~t~g~s 249 (343)
...+.+|++||.+. .+++++.+||.. +. +..|++.++..+ ....+..+..++..+.+|.
T Consensus 289 --~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 289 --RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp --SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred --CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 23688999999887 689999999975 43 777888776653 1124455777777776664
Q ss_pred -----HHHHHHHHHHHHHHHH
Q psy7809 250 -----GSDIRDLCQEIILIAA 265 (343)
Q Consensus 250 -----~~di~~l~~~A~~~a~ 265 (343)
+....++++.|...+.
T Consensus 366 ~~~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 366 SDRFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp CCSCTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHHHHH
Confidence 4467778887775443
No 52
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=3.6e-17 Score=137.88 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=106.2
Q ss_pred hccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---------
Q psy7809 43 EKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH--------- 113 (343)
Q Consensus 43 ~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l--------- 113 (343)
...+.....+..|++++|.++..+.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~ 76 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGL 76 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGG
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 34455556677899999999999998887753 245689999999999999999999986
Q ss_pred -CCceEEEcCCccc--cccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809 114 -GSTFFNVLPSSLT--SKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG 189 (343)
Q Consensus 114 -~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 189 (343)
+.+++.+++..+. ..+.+.....+..++..+.. ..+.||+|||+|.+...... .....+.+.+...++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-~~~~~~~~~l~~~~~------- 148 (195)
T 1jbk_A 77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DGAMDAGNMLKPALA------- 148 (195)
T ss_dssp TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHHH-------
T ss_pred cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-cchHHHHHHHHHhhc-------
Confidence 6788888887765 23445555667777776543 45779999999999753211 011112223333332
Q ss_pred CCCEEEEEecCCCC-----CCCHHHhcccc
Q psy7809 190 DKGVLVLAATNHPW-----DLDEALKRRFE 214 (343)
Q Consensus 190 ~~~v~vI~ttn~~~-----~l~~~l~~rf~ 214 (343)
..++.+|+++|.+. .+++++.+||.
T Consensus 149 ~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~ 178 (195)
T 1jbk_A 149 RGELHCVGATTLDEYRQYIEKDAALERRFQ 178 (195)
T ss_dssp TTSCCEEEEECHHHHHHHTTTCHHHHTTEE
T ss_pred cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc
Confidence 12567888888775 68999999986
No 53
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.69 E-value=1.4e-16 Score=149.75 Aligned_cols=127 Identities=25% Similarity=0.389 Sum_probs=80.7
Q ss_pred cccccHHHHHHHHHHHhccccChHH------------------HhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQL------------------FKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~------------------~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
.|+|++.+++.|...+......... ......++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999877432221111 0112345678999999999999999999999999999
Q ss_pred EEcCCcccc-ccccch-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhccc
Q psy7809 119 NVLPSSLTS-KHYGES-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDG 183 (343)
Q Consensus 119 ~v~~~~l~~-~~~~~~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~ 183 (343)
.+++..+.. .+.+.. ...+..++... ....++||||||+|.+...... ......+++.|+..|++
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhc
Confidence 999987752 333332 33455555432 2335689999999999753111 01112367788888874
No 54
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.1e-16 Score=144.10 Aligned_cols=193 Identities=9% Similarity=0.086 Sum_probs=125.8
Q ss_pred ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcCCcccc
Q psy7809 58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLPSSLTS 127 (343)
Q Consensus 58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~~~l~~ 127 (343)
|.|.++..+.+..++..... ...+.+++|+||||||||++++.+++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 67778888877776653221 1567899999999999999999999998 34688899876543
Q ss_pred cc----------------ccchHHHHHHHHHHH--HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809 128 KH----------------YGESEKLVRALFETA--RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG 189 (343)
Q Consensus 128 ~~----------------~~~~~~~i~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 189 (343)
.+ .+.....+...|... ....+.||+|||+|.|. ...++..|+.+... .
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--------~q~~L~~l~~~~~~-----~ 160 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--------SEKILQYFEKWISS-----K 160 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------CTHHHHHHHHHHHC-----S
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------cchHHHHHHhcccc-----c
Confidence 21 123455677777764 34457899999999996 12455556654321 1
Q ss_pred CCCEEEEEecCCCCCC----CHHHhcccc-Ccch--------HHHHHhhhhcCCCC------------------------
Q psy7809 190 DKGVLVLAATNHPWDL----DEALKRRFE-KRIS--------PIQIIGLCLGEIRK------------------------ 232 (343)
Q Consensus 190 ~~~v~vI~ttn~~~~l----~~~l~~rf~-~~i~--------r~~il~~~~~~~~~------------------------ 232 (343)
..+++||+++|..+.. ++.+.+||. ..+. ..+|++..+.....
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 240 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQ 240 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC------
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 3478999999998754 344566775 2333 44555555443210
Q ss_pred ------------CCcccHHHHHHHccCCCHHHHH---HHHHHHHHHHHHHHHHhc
Q psy7809 233 ------------DPNVDVATLSKQLIGYSGSDIR---DLCQEIILIAAREVIQNA 272 (343)
Q Consensus 233 ------------~~~~~~~~la~~t~g~s~~di~---~l~~~A~~~a~~r~~~~~ 272 (343)
..+..+..+|+.++. ..+|++ ++|++|+..|.++...+.
T Consensus 241 ~~~~~~~~~~~~i~~~ai~~~A~~vA~-~~GD~R~Al~ilr~A~~~ae~e~~~k~ 294 (318)
T 3te6_A 241 KIPDNVIVINHKINNKITQLIAKNVAN-VSGSTEKAFKICEAAVEISKKDFVRKG 294 (318)
T ss_dssp --CTTEEEECEECCHHHHHHHHHHHHH-HHCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 123346667764321 233443 799999999999887643
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=6.7e-16 Score=145.01 Aligned_cols=186 Identities=14% Similarity=0.109 Sum_probs=124.0
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----------CCceEEEcCCc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----------GSTFFNVLPSS 124 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----------~~~~~~v~~~~ 124 (343)
++++|.++.++.+...+..... ...+.+++|+||||||||++|+++++++ +.++++++|..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 7899999999999887753211 1345689999999999999999999987 88999998765
Q ss_pred cc-cc-----------------cccc-hHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHH-HHHHhhhcccC
Q psy7809 125 LT-SK-----------------HYGE-SEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRV-RCELLSHMDGV 184 (343)
Q Consensus 125 l~-~~-----------------~~~~-~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~-~~~ll~~l~~~ 184 (343)
.. .. ..+. ....+..++..+.... .||+|||+|.+.... .... +..|+...
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~-----~~~~~l~~l~~~~--- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR-----GGDIVLYQLLRSD--- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST-----TSHHHHHHHHTSS---
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC-----CCceeHHHHhcCC---
Confidence 43 10 0011 1233444444443333 399999999985321 1123 44444433
Q ss_pred CCCCCCCCEEEEEecCCC---CCCCHHHhccccCcch--------HHHHHhhhhcC-C--CCCCcccHHHHHHHcc---C
Q psy7809 185 GTGSGDKGVLVLAATNHP---WDLDEALKRRFEKRIS--------PIQIIGLCLGE-I--RKDPNVDVATLSKQLI---G 247 (343)
Q Consensus 185 ~~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~~i~--------r~~il~~~~~~-~--~~~~~~~~~~la~~t~---g 247 (343)
.++.+|++||.+ ..+++.+.+||...+. ...+++..+.. . ...++..++.++..+. |
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred ------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 268899999987 6789999999866554 55666665542 1 1223445778888887 4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy7809 248 YSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 248 ~s~~di~~l~~~A~~~a~ 265 (343)
..+.+.++++.|...|.
T Consensus 237 -~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 237 -DARKAVNLLFRAAQLAS 253 (384)
T ss_dssp -CHHHHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHHHHHhc
Confidence 45666677777765543
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.67 E-value=8e-15 Score=135.57 Aligned_cols=196 Identities=22% Similarity=0.234 Sum_probs=127.6
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
+.....+.+|++++|++.+++.+...+.... . ...++.+++|+||||+|||||++++|..++.++...+...+
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-----~--~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAK-----M--RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-----H--HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHH-----h--cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 4556677799999999999988887664210 0 01345689999999999999999999999988776654433
Q ss_pred ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC------CC-------CCCC
Q psy7809 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT------GS-------GDKG 192 (343)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~------~~-------~~~~ 192 (343)
.. ...+..++.. ...+.|+||||++.+.. .....|+..++.... .. ....
T Consensus 88 ~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 88 VK------QGDMAAILTS--LERGDVLFIDEIHRLNK---------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp CS------HHHHHHHHHH--CCTTCEEEEETGGGCCH---------HHHHHHHHHHHTSCCCC---------------CC
T ss_pred cC------HHHHHHHHHH--ccCCCEEEEcchhhcCH---------HHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 21 1123333221 12457999999998842 122223332322110 00 0124
Q ss_pred EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILI 263 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~ 263 (343)
+.++++++.+..|++.+++||...+. ..++++........ .++..+..||..+.| +++.+..+++++...
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 67788999999999999999864332 55666655543322 234457789999988 678888999888777
Q ss_pred HHH
Q psy7809 264 AAR 266 (343)
Q Consensus 264 a~~ 266 (343)
|..
T Consensus 230 a~~ 232 (334)
T 1in4_A 230 LTV 232 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 57
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=5e-15 Score=139.13 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=127.0
Q ss_pred CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCc--eEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCcccc
Q psy7809 54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWR--GILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTS 127 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~--~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~ 127 (343)
..++++|.+..++.+...+..... + ..+. +++|+||+|+|||+++++++..+ +..+++++|.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~------~--~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR------N--PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH------S--TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc------C--CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 347899999999999887753211 1 2334 89999999999999999999998 56788888765432
Q ss_pred cc----------------cc-chHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809 128 KH----------------YG-ESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG 189 (343)
Q Consensus 128 ~~----------------~~-~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 189 (343)
.. .+ ........+...... ..|.||+|||+|.+ ....+..|+..++......
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------~~~~~~~L~~~~~~~~~~~- 156 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------APDILSTFIRLGQEADKLG- 156 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---------CHHHHHHHHHHTTCHHHHS-
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---------chHHHHHHHHHHHhCCCCC-
Confidence 10 01 112223333333322 34789999999988 2245556666665432100
Q ss_pred CCCEEEEEecCCC---CCCCHHHhccccC-cch--------HHHHHhhhhcC---CCCCCcccHHHHHHHc---------
Q psy7809 190 DKGVLVLAATNHP---WDLDEALKRRFEK-RIS--------PIQIIGLCLGE---IRKDPNVDVATLSKQL--------- 245 (343)
Q Consensus 190 ~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~--------r~~il~~~~~~---~~~~~~~~~~~la~~t--------- 245 (343)
..++.+|+++|.+ ..+++.+.+||.. .+. ..+++...+.. ....++..+..++..+
T Consensus 157 ~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (389)
T 1fnn_A 157 AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 236 (389)
T ss_dssp SCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred cCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCC
Confidence 1368899999988 6788888888875 333 44555554433 1223455678899998
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q psy7809 246 IGYSGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 246 ~g~s~~di~~l~~~A~~~a~~ 266 (343)
.| .++.+.++++.|...|..
T Consensus 237 ~G-~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 237 RG-DARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp SC-CHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHHHHH
Confidence 45 578888888888877653
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=7.9e-16 Score=142.77 Aligned_cols=195 Identities=19% Similarity=0.216 Sum_probs=113.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE----EcCCcc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN----VLPSSL 125 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~----v~~~~l 125 (343)
.++..|++++|++.+++.+......+ ...++||+||||||||++|+++++.++...+. ++|...
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 45678999999999888765444321 23469999999999999999999988631110 112111
Q ss_pred cc---------------------ccccchHHH------HHHHHHHH---------HHcCCcEEEEcccccccCCCCchhh
Q psy7809 126 TS---------------------KHYGESEKL------VRALFETA---------RARAPAVIFIDEVDAFCSGSREHEA 169 (343)
Q Consensus 126 ~~---------------------~~~~~~~~~------i~~~~~~a---------~~~~p~il~iDeid~l~~~~~~~~~ 169 (343)
.. ...+..... +...+... ....+++|||||+|.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-------
Confidence 00 001111111 01111111 111357999999998832
Q ss_pred hHHHHHHHhhhccc----CCCCC----CCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHHHhhhh----
Q psy7809 170 TRRVRCELLSHMDG----VGTGS----GDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQIIGLCL---- 227 (343)
Q Consensus 170 ~~~~~~~ll~~l~~----~~~~~----~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~il~~~~---- 227 (343)
...+.|+..++. +.... .+.++++|+|+|... .+++++++||...+. +.+|++..+
T Consensus 159 --~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~ 236 (350)
T 1g8p_A 159 --HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDA 236 (350)
T ss_dssp --HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhccc
Confidence 344455555542 11111 012688999999744 799999999976444 446665421
Q ss_pred ---------------------------cCCCCCCcccHHHHHHHccCC---CHHHHHHHHHHHHHHHHH
Q psy7809 228 ---------------------------GEIRKDPNVDVATLSKQLIGY---SGSDIRDLCQEIILIAAR 266 (343)
Q Consensus 228 ---------------------------~~~~~~~~~~~~~la~~t~g~---s~~di~~l~~~A~~~a~~ 266 (343)
.... .++..+..|+....+. +.+.+..+++.|...|..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 237 DPKAFLEEWRPKDMDIRNQILEARERLPKVE-APNTALYDCAALCIALGSDGLRGELTLLRSARALAAL 304 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCB-CCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHH
T ss_pred CchhhccccccchHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHH
Confidence 1111 2334455666655442 568888888887777653
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=7.6e-16 Score=140.80 Aligned_cols=187 Identities=20% Similarity=0.139 Sum_probs=124.8
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEE
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFN 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~ 119 (343)
.+.+++.+..|++++|++.+++.+...+... ...++||+||||+|||++|+++++.+ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 4567888999999999999999988766431 22349999999999999999999986 345788
Q ss_pred EcCCccccccccchHHHHHHHHHHH-H-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809 120 VLPSSLTSKHYGESEKLVRALFETA-R-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLA 197 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~~i~~~~~~a-~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ 197 (343)
+++.+..+. ......+..+.... . ...+.||+|||+|.+. ....+.|+..++.. ..++.+|+
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~L~~~le~~-----~~~~~~i~ 137 (319)
T 2chq_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT---------ADAQAALRRTMEMY-----SKSCRFIL 137 (319)
T ss_dssp EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC---------HHHHHTTGGGTSSS-----SSSEEEEE
T ss_pred EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC---------HHHHHHHHHHHHhc-----CCCCeEEE
Confidence 887764331 11112222221110 0 1346899999999883 24456777777653 34688999
Q ss_pred ecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809 198 ATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI 260 (343)
Q Consensus 198 ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A 260 (343)
++|.+..+.+.+.+|+...-. ...++...+..... .++..+..++..+.| +.+.+.++++.+
T Consensus 138 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 138 SCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp EESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred EeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999999999999998752221 45555555554422 234456778877766 455555555544
No 60
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.66 E-value=5.8e-16 Score=144.85 Aligned_cols=185 Identities=22% Similarity=0.221 Sum_probs=125.3
Q ss_pred ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------- 116 (343)
Q Consensus 46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------- 116 (343)
+.+++.+..|++++|++.+++.+...+... ..+..++|+||+|+|||++|+++++.++..
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 456678889999999999999999877532 344578999999999999999999988642
Q ss_pred ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809 117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL 177 (343)
Q Consensus 117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l 177 (343)
++.++.... ... ..++.++..+.. ..+.||+|||+|.+. ....+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~L 139 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAASR--TKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------RHSFNAL 139 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTCS--CCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSC---------HHHHHHH
T ss_pred ccHHHHHHhccCCCceEEeccccc--CCH----HHHHHHHHHHhhccccCCeEEEEEECcchhc---------HHHHHHH
Confidence 222222110 011 124444444432 236799999999883 2345667
Q ss_pred hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCC
Q psy7809 178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYS 249 (343)
Q Consensus 178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s 249 (343)
+..++.. +.++++|++|+.+..+.+.+.+|+...-. ...+++..+...... ++..+..++..+.| +
T Consensus 140 l~~le~~-----~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~ 213 (373)
T 1jr3_A 140 LKTLEEP-----PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 213 (373)
T ss_dssp HHHHHSC-----CSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred HHHHhcC-----CCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence 7777643 34788888899888899999987632111 455555555433222 34447789999977 6
Q ss_pred HHHHHHHHHHHHH
Q psy7809 250 GSDIRDLCQEIIL 262 (343)
Q Consensus 250 ~~di~~l~~~A~~ 262 (343)
.+++.++++.+..
T Consensus 214 ~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 214 LRDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877653
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=6e-16 Score=141.30 Aligned_cols=201 Identities=19% Similarity=0.251 Sum_probs=131.5
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc--
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY-- 130 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~-- 130 (343)
++++|++.+++.+...+...... ......+..+++|+||||||||++|++++..+ +.+++.++|..+.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 36889999999998877542100 00011234579999999999999999999988 45689998877653210
Q ss_pred ----------cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEE
Q psy7809 131 ----------GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVL 194 (343)
Q Consensus 131 ----------~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~ 194 (343)
+... ...+.........++|||||+|.+. ..+.+.|+..++...... ...+++
T Consensus 94 ~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~---------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAH---------PDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSC---------HHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcC---------HHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 1000 0122223333445899999999883 355667777665422110 013677
Q ss_pred EEEecCC--------------------------CCCCCHHHhccccCcch--------HHHHHhhhhcCC----------
Q psy7809 195 VLAATNH--------------------------PWDLDEALKRRFEKRIS--------PIQIIGLCLGEI---------- 230 (343)
Q Consensus 195 vI~ttn~--------------------------~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~---------- 230 (343)
+|+|||. ...+++.+++||+..+. +..|++.++...
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~ 242 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS 242 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 9999998 34578888899865554 556666655442
Q ss_pred CCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 231 RKDPNVDVATLSKQLI--GYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 231 ~~~~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
...++..+..|+...- .++.++|++++++++..+..+...
T Consensus 243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 243 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp EEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred EEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 1113344667777664 567899999999999988877765
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=5.1e-16 Score=160.43 Aligned_cols=208 Identities=20% Similarity=0.233 Sum_probs=135.7
Q ss_pred hHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---
Q psy7809 37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH--- 113 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l--- 113 (343)
...+.+..++.....+..|++++|.++.++.+...+.. ....+++|+||||||||++|+++|..+
T Consensus 151 ~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~ 218 (854)
T 1qvr_A 151 NALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKG 218 (854)
T ss_dssp SHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 35566667777777888999999999999998887753 244679999999999999999999987
Q ss_pred -------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc
Q psy7809 114 -------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG 183 (343)
Q Consensus 114 -------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~ 183 (343)
+.+++.+++..+. ..+.+.....+..+|..+... .|+||||||+|.+.+..... ......+.|...++.
T Consensus 219 ~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-g~~~~~~~L~~~l~~ 297 (854)
T 1qvr_A 219 DVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GAVDAGNMLKPALAR 297 (854)
T ss_dssp CSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHHT
T ss_pred CCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-chHHHHHHHHHHHhC
Confidence 7889999998886 456777888899999988775 68899999999997532221 112233344444432
Q ss_pred CCCCCCCCCEEEEEecCCCC----CCCHHHhccccCcch--------HHHHHhhhhcCC----C-CCCcccHHHHHHHcc
Q psy7809 184 VGTGSGDKGVLVLAATNHPW----DLDEALKRRFEKRIS--------PIQIIGLCLGEI----R-KDPNVDVATLSKQLI 246 (343)
Q Consensus 184 ~~~~~~~~~v~vI~ttn~~~----~l~~~l~~rf~~~i~--------r~~il~~~~~~~----~-~~~~~~~~~la~~t~ 246 (343)
..+.+|++|+.++ .+++++.+||.. +. +..|++.++... . ...+..+..++..+.
T Consensus 298 -------~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 298 -------GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp -------TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred -------CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 2577888888764 478999999986 43 777777665432 1 113344566666654
Q ss_pred -----CCCHHHHHHHHHHHHHHHH
Q psy7809 247 -----GYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 247 -----g~s~~di~~l~~~A~~~a~ 265 (343)
+|.+....++++.|...+.
T Consensus 370 r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 370 RYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred hhcccccChHHHHHHHHHHHHHHH
Confidence 4557777777777766554
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=4.3e-16 Score=159.18 Aligned_cols=192 Identities=22% Similarity=0.231 Sum_probs=133.5
Q ss_pred HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809 38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---- 113 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---- 113 (343)
..+.....+.....+..+++++|.++.++.+...+.. ....++||+||||||||++|+++|..+
T Consensus 162 ~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~ 229 (758)
T 3pxi_A 162 TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE 229 (758)
T ss_dssp HHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 4455556666777788999999999999999988754 244689999999999999999999997
Q ss_pred ------CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC
Q psy7809 114 ------GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG 187 (343)
Q Consensus 114 ------~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~ 187 (343)
+.+++.+++ ...+.|..+..+..+|..+....|+||||| . .....+.|+..++
T Consensus 230 ~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~-------~~~~~~~L~~~l~----- 288 (758)
T 3pxi_A 230 VPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------A-------AIDASNILKPSLA----- 288 (758)
T ss_dssp SCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C---------------CCCTT-----
T ss_pred CChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------C-------chhHHHHHHHHHh-----
Confidence 778888877 455667777788999999998889999999 1 1123445555554
Q ss_pred CCCCCEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcCCCC-----CCcccHHHHHHHcc---
Q psy7809 188 SGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-----DPNVDVATLSKQLI--- 246 (343)
Q Consensus 188 ~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-----~~~~~~~~la~~t~--- 246 (343)
...+.+|++||... .+++++++||.. +. +..|++.+...... ..+..+..++..+.
T Consensus 289 --~~~v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 289 --RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp --SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred --cCCEEEEeCCChHHHHHHhhccHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 23688999999888 799999999954 44 77888876665311 23344566666554
Q ss_pred --CCCHHHHHHHHHHHHHHHH
Q psy7809 247 --GYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 247 --g~s~~di~~l~~~A~~~a~ 265 (343)
++.+.....++..|...+.
T Consensus 366 ~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 366 SDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp CCSCTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHHHHH
Confidence 4566777778887776554
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=4e-15 Score=136.47 Aligned_cols=189 Identities=19% Similarity=0.175 Sum_probs=124.1
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceE
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFF 118 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~ 118 (343)
..+..++.+..|++++|++++++.+...+... ...+++|+||||+|||++|+++++.+. ..++
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 45677889999999999999999999877532 233599999999999999999999863 2467
Q ss_pred EEcCCccccccccchHHHHHHHHHHH-H-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809 119 NVLPSSLTSKHYGESEKLVRALFETA-R-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVL 196 (343)
Q Consensus 119 ~v~~~~l~~~~~~~~~~~i~~~~~~a-~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI 196 (343)
.+++.+..+. ......+....... . ...+.||+|||+|.+. ....+.|+..++.. ..++.+|
T Consensus 81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~L~~~le~~-----~~~~~~i 144 (327)
T 1iqp_A 81 ELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT---------QDAQQALRRTMEMF-----SSNVRFI 144 (327)
T ss_dssp EEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC---------HHHHHHHHHHHHHT-----TTTEEEE
T ss_pred EeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC---------HHHHHHHHHHHHhc-----CCCCeEE
Confidence 7776543211 11111122111100 0 1346799999999883 23455666766643 2367888
Q ss_pred EecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 197 AATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 197 ~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
+++|.+..+.+.+.+|+...-. ...+++..+..... .++..++.++..+.| +.+.+.++++.+.
T Consensus 145 ~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 145 LSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 8999999999999998752211 34445544443322 234456788888866 5666666666544
No 65
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=3e-15 Score=138.14 Aligned_cols=155 Identities=23% Similarity=0.203 Sum_probs=100.5
Q ss_pred cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc--
Q psy7809 47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS-- 124 (343)
Q Consensus 47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~-- 124 (343)
+.+..+..+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++..
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~ 83 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL 83 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 3444445578899999999988876642 258999999999999999999999999999888731
Q ss_pred ----cccccccchHHHHHHHHHHHHHcC---CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC------CCCCC
Q psy7809 125 ----LTSKHYGESEKLVRALFETARARA---PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT------GSGDK 191 (343)
Q Consensus 125 ----l~~~~~~~~~~~i~~~~~~a~~~~---p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~ 191 (343)
+.+........ ..| ..... .+||||||+|.+. ....+.|+..++.... ...+.
T Consensus 84 ~~~~l~g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~---------~~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 84 LPSDLIGTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSP---------AKVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp CHHHHHEEEEEETTT---TEE--EEEECTTCSSEEEEETGGGSC---------HHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred ChhhcCCceeecCCC---Cce--EeccCcccccEEEEEccccCC---------HHHHHHHHHHHhcCceeeCCEEEECCC
Confidence 11111100000 000 00011 2699999999873 2344555555543110 01133
Q ss_pred CEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcC
Q psy7809 192 GVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGE 229 (343)
Q Consensus 192 ~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~ 229 (343)
+++||+|+|..+ .+++++++||...+. +.+|++..+..
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 678888888543 389999999975444 77788776654
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=5.7e-15 Score=138.29 Aligned_cols=195 Identities=20% Similarity=0.160 Sum_probs=127.3
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh------CCceEEEcCCccc
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH------GSTFFNVLPSSLT 126 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l------~~~~~~v~~~~l~ 126 (343)
...++++|.+..++.+...+..... ...+..++|+||+|+|||+++++++..+ +..+++++|....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 3457899999999999887653211 1455689999999999999999999988 8889998875432
Q ss_pred cc----------------cccc-hHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC
Q psy7809 127 SK----------------HYGE-SEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS 188 (343)
Q Consensus 127 ~~----------------~~~~-~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 188 (343)
.. ..+. ....+..++....... |.||+|||++.+..... ...+..++..++...
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----~~~l~~l~~~~~~~~--- 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----DDILYKLSRINSEVN--- 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----STHHHHHHHHHHSCC---
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----CHHHHHHhhchhhcC---
Confidence 10 0111 2333445555444443 88999999999854211 234556666654431
Q ss_pred CCCCEEEEEecCCC---CCCCHHHhccccC-cch--------HHHHHhhhhcCC---CCCCcccHHHHHHHcc---CCCH
Q psy7809 189 GDKGVLVLAATNHP---WDLDEALKRRFEK-RIS--------PIQIIGLCLGEI---RKDPNVDVATLSKQLI---GYSG 250 (343)
Q Consensus 189 ~~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~--------r~~il~~~~~~~---~~~~~~~~~~la~~t~---g~s~ 250 (343)
..++.+|++++.+ ..+++.+.+||.. .+. ..+++...+... ....+..+..++..+. | ++
T Consensus 161 -~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~ 238 (386)
T 2qby_A 161 -KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DA 238 (386)
T ss_dssp -C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CH
T ss_pred -CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CH
Confidence 3378889999877 4577888888754 333 555665544321 1223444677888876 6 57
Q ss_pred HHHHHHHHHHHHHHH
Q psy7809 251 SDIRDLCQEIILIAA 265 (343)
Q Consensus 251 ~di~~l~~~A~~~a~ 265 (343)
+.+.++++.|...+.
T Consensus 239 r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 239 RRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888876665
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=4.2e-15 Score=136.07 Aligned_cols=184 Identities=14% Similarity=0.088 Sum_probs=125.6
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEE
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFN 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~ 119 (343)
.+..++.+..|++++|++.+++.+...+... ..+ +++|+||+|+|||++|+++++.+ +..++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 3456678889999999999999999887532 223 49999999999999999999986 345777
Q ss_pred EcCCccccccccchHHHHHHHHHHHH-------HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809 120 VLPSSLTSKHYGESEKLVRALFETAR-------ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG 192 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~~i~~~~~~a~-------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 192 (343)
+++.+..+ ...++.++.... ...+.||+|||+|.+.. ...+.|+..++.. ..+
T Consensus 78 ~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~le~~-----~~~ 137 (323)
T 1sxj_B 78 LNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------GAQQALRRTMELY-----SNS 137 (323)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------HHHHTTHHHHHHT-----TTT
T ss_pred ecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------HHHHHHHHHHhcc-----CCC
Confidence 87765321 233444444433 22368999999998832 3355666666643 336
Q ss_pred EEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809 193 VLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII 261 (343)
Q Consensus 193 v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~ 261 (343)
+.+|++||.+..+.+.+.+|+...-. ...++...+..... .++..+..++..+.| +.+.+.++++.+.
T Consensus 138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 78888899999999999998652211 44555554433221 234557788888877 4666666665544
No 68
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=1.1e-15 Score=149.43 Aligned_cols=201 Identities=19% Similarity=0.164 Sum_probs=118.9
Q ss_pred ccccccCCCCCCCcccccHHHHHHHHHHHhccccCh-HHHhc----cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMP-QLFKG----ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~-~~~~~----~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
..+.+++++.+|++|+|++.+++.|...+....... ..+.. ...++.++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 456778899999999999999999999886421110 00110 1124579999999999999999999999999999
Q ss_pred EEcCCccccccccchH-------HHHHHHHHHH-----HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809 119 NVLPSSLTSKHYGESE-------KLVRALFETA-----RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT 186 (343)
Q Consensus 119 ~v~~~~l~~~~~~~~~-------~~i~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~ 186 (343)
++++.++......... ..+..+|..+ ....++||||||+|.+..... ..+..|+..++..
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~------~~l~~L~~~l~~~-- 178 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------GGVGQLAQFCRKT-- 178 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------THHHHHHHHHHHC--
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH------HHHHHHHHHHHhc--
Confidence 9999886553211000 0011222222 124578999999999965322 1234455554432
Q ss_pred CCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHH
Q psy7809 187 GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLC 257 (343)
Q Consensus 187 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~ 257 (343)
...+++|+++.....+. .+.+|+. .+. +..++...+.... ..++..+..|++.+.| ..+.+.+++
T Consensus 179 ---~~~iIli~~~~~~~~l~-~l~~r~~-~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L 252 (516)
T 1sxj_A 179 ---STPLILICNERNLPKMR-PFDRVCL-DIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLL 252 (516)
T ss_dssp ---SSCEEEEESCTTSSTTG-GGTTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHH
T ss_pred ---CCCEEEEEcCCCCccch-hhHhceE-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHH
Confidence 12455555444334444 3444322 222 4455554443321 1234458889988866 344444444
Q ss_pred H
Q psy7809 258 Q 258 (343)
Q Consensus 258 ~ 258 (343)
+
T Consensus 253 ~ 253 (516)
T 1sxj_A 253 S 253 (516)
T ss_dssp T
T ss_pred H
Confidence 3
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=4.8e-15 Score=137.80 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=118.4
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHH-hccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--------
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETL-LLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-------- 115 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-------- 115 (343)
.+.+++.+.+|++++|++.+++.+...+ ... ..+. ++|+||+|+|||+++++++.++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~-----------~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~ 70 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPR-----------DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTT-----------CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCC-----------CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence 4678899999999999999999988766 221 2333 999999999999999999996521
Q ss_pred ---------------------ceEEEcCCccccccccchHHHHHHHHHHHH--------------HcCCcEEEEcccccc
Q psy7809 116 ---------------------TFFNVLPSSLTSKHYGESEKLVRALFETAR--------------ARAPAVIFIDEVDAF 160 (343)
Q Consensus 116 ---------------------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~--------------~~~p~il~iDeid~l 160 (343)
.++.++..+... . ....++..+..+. ...|.||+|||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L 146 (354)
T 1sxj_E 71 DVRQFVTASNRKLELNVVSSPYHLEITPSDMGN---N-DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL 146 (354)
T ss_dssp ---------------CCEECSSEEEECCC-------C-CHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS
T ss_pred cceeecccccccceeeeecccceEEecHhhcCC---c-chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc
Confidence 122222211100 0 0112333333321 235679999999986
Q ss_pred cCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-
Q psy7809 161 CSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK- 232 (343)
Q Consensus 161 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~- 232 (343)
. ....+.|++.++... .+..+|.+|+.++.+.+.+++|+...-. ...+++..+.....
T Consensus 147 ~---------~~~~~~L~~~le~~~-----~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 147 T---------KDAQAALRRTMEKYS-----KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp C---------HHHHHHHHHHHHHST-----TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred C---------HHHHHHHHHHHHhhc-----CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 2 234556666666542 2578888899999999999998732111 44555554443322
Q ss_pred CC-cccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809 233 DP-NVDVATLSKQLIGYSGSDIRDLCQEIIL 262 (343)
Q Consensus 233 ~~-~~~~~~la~~t~g~s~~di~~l~~~A~~ 262 (343)
.+ +..+..++..+.| +.+++.++++.+..
T Consensus 213 ~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 213 LETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp ECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 13 4557889988877 56666666665543
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=3.3e-15 Score=152.63 Aligned_cols=199 Identities=18% Similarity=0.231 Sum_probs=134.8
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE 132 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~ 132 (343)
++++|++.+++.+...+....... .....+..++||+||||||||++|+++|..+ +.+++.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 468999999999888776432100 0001233479999999999999999999997 6789999999988776544
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC------CCCCCEEEEEecCCCCC--
Q psy7809 133 SEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG------SGDKGVLVLAATNHPWD-- 204 (343)
Q Consensus 133 ~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~v~vI~ttn~~~~-- 204 (343)
...+........++||||||||.+ ...+++.|++.++.-.-. ....+++||+|||.+..
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKA---------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGS---------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred ----cchhhHHHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 112233344456689999999887 346777788877742110 01336789999997654
Q ss_pred ----------CCHHHhccccCcch--------HHHHHhhhhcCC-------CC---CCcccHHHHHHHc--cCCCHHHHH
Q psy7809 205 ----------LDEALKRRFEKRIS--------PIQIIGLCLGEI-------RK---DPNVDVATLSKQL--IGYSGSDIR 254 (343)
Q Consensus 205 ----------l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~~---~~~~~~~~la~~t--~g~s~~di~ 254 (343)
+.+.+++||+..+. +..|++.++... .. .++..++.|+... ..+..++|+
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 714 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR 714 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence 78899999976554 555555555432 11 1233455666542 345678999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7809 255 DLCQEIILIAAREVIQ 270 (343)
Q Consensus 255 ~l~~~A~~~a~~r~~~ 270 (343)
+++++++..++.+..-
T Consensus 715 ~~i~~~v~~~l~~~~l 730 (758)
T 3pxi_A 715 RAIQKHVEDRLSEELL 730 (758)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988877664
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=1.1e-14 Score=148.94 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=132.6
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhcc---CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc----
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGI---LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK---- 128 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~---- 128 (343)
++++|++++++.+...+.... .++ ..+..++||+||||||||++|+++|..++.+++.++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHh------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHh
Confidence 358899999988887664321 111 1344579999999999999999999999999999999887543
Q ss_pred --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC--C----CCCCEE
Q psy7809 129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG--S----GDKGVL 194 (343)
Q Consensus 129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~--~----~~~~v~ 194 (343)
|+|... ...+........++||||||+|.+ ...+++.|++.|+.-.-. . ...+++
T Consensus 532 ~l~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA---------HPDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp SSCCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred hhcCCCCCCcCccc--cchHHHHHHhCCCcEEEEeCcccc---------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 222111 112233344455689999999987 345777888877732110 0 013688
Q ss_pred EEEecCCCC-------------------------CCCHHHhccccCcch--------HHHHHhhhhcCC---------C-
Q psy7809 195 VLAATNHPW-------------------------DLDEALKRRFEKRIS--------PIQIIGLCLGEI---------R- 231 (343)
Q Consensus 195 vI~ttn~~~-------------------------~l~~~l~~rf~~~i~--------r~~il~~~~~~~---------~- 231 (343)
||+|||... .+++.+++||+..+. +..|++.++... .
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 999999754 467888999976665 556666655421 0
Q ss_pred CCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809 232 KDPNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVI 269 (343)
Q Consensus 232 ~~~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~ 269 (343)
..++..++.|+... .++..++|..++++++..++.+..
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 11333456677654 355689999999999988776654
No 72
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.2e-13 Score=127.80 Aligned_cols=171 Identities=19% Similarity=0.169 Sum_probs=112.2
Q ss_pred cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809 45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN 119 (343)
Q Consensus 45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~ 119 (343)
.+.+++.+..|++++|++.+++.|...+... .. .+++|+||||||||++++++|+.+.. .+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 5667888999999999999999998877531 22 24999999999999999999998743 3666
Q ss_pred EcCCccccccccchHHHHHHHHHHHHH------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809 120 VLPSSLTSKHYGESEKLVRALFETARA------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV 193 (343)
Q Consensus 120 v~~~~l~~~~~~~~~~~i~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 193 (343)
+++.+..+ ...++..+..... ..+.|++|||+|.+.. ...+.|+..++.. ....
T Consensus 82 ~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~le~~-----~~~~ 141 (340)
T 1sxj_C 82 LNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------AAQNALRRVIERY-----TKNT 141 (340)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------HHHHHHHHHHHHT-----TTTE
T ss_pred EcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------HHHHHHHHHHhcC-----CCCe
Confidence 66654221 1223333322221 1357999999998832 3455677777654 2356
Q ss_pred EEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccC
Q psy7809 194 LVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIG 247 (343)
Q Consensus 194 ~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g 247 (343)
.+|+++|.+..+.+++++|+...-. ...++...+..... .++..+..++..+.|
T Consensus 142 ~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 142 RFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred EEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7888899999999999998752211 23334433322211 233345667776655
No 73
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=2.6e-15 Score=148.73 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=89.4
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE----cCCcccccccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV----LPSSLTSKHYG 131 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v----~~~~l~~~~~~ 131 (343)
..++|++.+++.+...+..... ............++||+||||||||++|+++|+.++..++.. ++.++......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~-~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVP-KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCC-EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCCc-ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 4689999998887543332100 000001123344899999999999999999999987665542 22333222111
Q ss_pred chH----HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC--------CCCCCCEEEEEec
Q psy7809 132 ESE----KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT--------GSGDKGVLVLAAT 199 (343)
Q Consensus 132 ~~~----~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~~~v~vI~tt 199 (343)
... ......+..+ ..+|+||||||.+.. .....|+..|+.-.- ...+.++.||+||
T Consensus 374 ~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~---------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaat 441 (595)
T 3f9v_A 374 EKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD---------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAG 441 (595)
T ss_dssp GGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS---------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEE
T ss_pred ccccccccccCCeeEec---CCCcEEeehhhhCCH---------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEc
Confidence 100 0000112222 347999999998832 345566666653211 0113468899999
Q ss_pred CCCC-------------CCCHHHhccccCcc
Q psy7809 200 NHPW-------------DLDEALKRRFEKRI 217 (343)
Q Consensus 200 n~~~-------------~l~~~l~~rf~~~i 217 (343)
|.++ .+++++++||+..+
T Consensus 442 Np~~G~~~~~~~~~~ni~l~~aLl~RFDl~~ 472 (595)
T 3f9v_A 442 NPKFGRYISERPVSDNINLPPTILSRFDLIF 472 (595)
T ss_dssp CCTTCCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred CCcCCccCcccCchhccCCCHHHHhhCeEEE
Confidence 9886 89999999997544
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=7.8e-14 Score=144.15 Aligned_cols=201 Identities=21% Similarity=0.272 Sum_probs=133.0
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc---
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH--- 129 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~--- 129 (343)
++|+|++.+++.+...+...... + .....+..++||+||||||||++|++++..+ +.+++.++|+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g--~-~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAG--L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG--C-SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcc--c-CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHH
Confidence 56899999999998877532100 0 0001233589999999999999999999998 7899999998776431
Q ss_pred ---------ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEE
Q psy7809 130 ---------YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVL 194 (343)
Q Consensus 130 ---------~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~ 194 (343)
+|... ...+........++||||||+|.+ ...+++.|+..++.-.-.. .-.+++
T Consensus 635 ~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 635 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA---------HPDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GC----------------CHHHHHHHCSSEEEEESSGGGS---------CHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc---------CHHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 11111 122333344455689999999887 3467788888887421100 023688
Q ss_pred EEEecCCC--------------------------CCCCHHHhccccCcch--------HHHHHhhhhcCC-------C--
Q psy7809 195 VLAATNHP--------------------------WDLDEALKRRFEKRIS--------PIQIIGLCLGEI-------R-- 231 (343)
Q Consensus 195 vI~ttn~~--------------------------~~l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~-- 231 (343)
||+|||.. ..+.+.+++||+..+. ...|++.++... .
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~ 783 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRIS 783 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 99999972 2456778888866554 445555555421 1
Q ss_pred -CCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809 232 -KDPNVDVATLSKQLI--GYSGSDIRDLCQEIILIAAREVIQ 270 (343)
Q Consensus 232 -~~~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a~~r~~~ 270 (343)
..++..++.|+...- .+..++|++++++++..++.+...
T Consensus 784 ~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 784 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred EEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 123344667777665 568899999999999998887664
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.51 E-value=2.9e-14 Score=137.89 Aligned_cols=186 Identities=16% Similarity=0.122 Sum_probs=107.2
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCC-----ccccc
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPS-----SLTSK 128 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~-----~l~~~ 128 (343)
..++|++++++.+...+. ...++||+||||||||++|+++|..++. +|..+.+. ++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 358899999988876653 2358999999999999999999998853 55555543 22221
Q ss_pred cccchHHHHHHHHHHHH-Hc--CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC------CCCCCCCEEEEEec
Q psy7809 129 HYGESEKLVRALFETAR-AR--APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG------TGSGDKGVLVLAAT 199 (343)
Q Consensus 129 ~~~~~~~~i~~~~~~a~-~~--~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~------~~~~~~~v~vI~tt 199 (343)
..+..... ...|..+. .. .++|||||||+.+ .....+.|+..|+... ....+.+ ++|++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~---------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~AT 156 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAAS 156 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC---------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh---------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhcc
Confidence 11111000 11121111 11 3579999999876 3356667777765211 0011223 456677
Q ss_pred CCCCC---CCHHHhccccCcch---------HHHHHhhhhcCC-------------------------CCCCcccHHHHH
Q psy7809 200 NHPWD---LDEALKRRFEKRIS---------PIQIIGLCLGEI-------------------------RKDPNVDVATLS 242 (343)
Q Consensus 200 n~~~~---l~~~l~~rf~~~i~---------r~~il~~~~~~~-------------------------~~~~~~~~~~la 242 (343)
|.+.. ..+++++||...+. +..|++...... .+ ++.-++.++
T Consensus 157 N~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v-~d~v~e~i~ 235 (500)
T 3nbx_X 157 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITL-PDHVFELIF 235 (500)
T ss_dssp SSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBC-CHHHHHHHH
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccC-chHHHHHHH
Confidence 75322 44699999866554 345665543211 11 112234444
Q ss_pred HHc---------cCCCHHHHHHHHHHHHHHHHHH
Q psy7809 243 KQL---------IGYSGSDIRDLCQEIILIAARE 267 (343)
Q Consensus 243 ~~t---------~g~s~~di~~l~~~A~~~a~~r 267 (343)
... .|.|++.+..+++.|...|..+
T Consensus 236 ~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 236 MLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp HHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 443 4778888888888777776654
No 76
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.51 E-value=2.5e-13 Score=121.23 Aligned_cols=141 Identities=20% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCcccccc
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLTSKH 129 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~~~~ 129 (343)
.+|++++|.+...+.+.+.+.... ..+.++||+||||||||++|++++..+. .+++.++|..+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 468899999888888776664321 3446899999999999999999999875 689999998764211
Q ss_pred c-----cchHHHH-------HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCC
Q psy7809 130 Y-----GESEKLV-------RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDK 191 (343)
Q Consensus 130 ~-----~~~~~~i-------~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~ 191 (343)
. |...... ...+.. ...++|||||+|.+.. .....|+..++... .. ....
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~---------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 140 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM---------MVQEKLLRVIEYGELERVGGSQPLQV 140 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH---------HHHHHHHHHHHHCEECCCCC--CEEC
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH---------HHHHHHHHHHHhCCeecCCCcccccC
Confidence 0 1000000 011221 2357999999998832 34455555554311 00 0023
Q ss_pred CEEEEEecCCC-------CCCCHHHhccccC
Q psy7809 192 GVLVLAATNHP-------WDLDEALKRRFEK 215 (343)
Q Consensus 192 ~v~vI~ttn~~-------~~l~~~l~~rf~~ 215 (343)
++.+|+|||.+ ..+.+.+.+||..
T Consensus 141 ~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~ 171 (265)
T 2bjv_A 141 NVRLVCATNADLPAMVNEGTFRADLLDALAF 171 (265)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHCS
T ss_pred CeEEEEecCcCHHHHHHcCCccHHHHHhhcC
Confidence 57889999874 2467888888853
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.49 E-value=4.2e-14 Score=114.72 Aligned_cols=112 Identities=12% Similarity=0.193 Sum_probs=77.6
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES 133 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~ 133 (343)
+++|.....+.+.+.+.... ....++||+||||||||++|++++... +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 57888888887777664321 345689999999999999999999886 67888 999876654
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 134 EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 134 ~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
......+..+ ..++|||||+|.+. ......|+..+... ..++.+|++||.+
T Consensus 66 -~~~~~~~~~a---~~g~l~ldei~~l~---------~~~q~~Ll~~l~~~-----~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALA---QGGTLVLSHPEHLT---------REQQYHLVQLQSQE-----HRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHH---TTSCEEEECGGGSC---------HHHHHHHHHHHHSS-----SCSSCEEEEESSC
T ss_pred -hhhhcHHHHc---CCcEEEEcChHHCC---------HHHHHHHHHHHhhc-----CCCEEEEEECCcC
Confidence 1233444444 34799999999883 23445566666332 2256788888864
No 78
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.47 E-value=1.6e-13 Score=136.63 Aligned_cols=54 Identities=28% Similarity=0.400 Sum_probs=46.2
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.+.++..|++++|++.+++.+...+. ...+++|+||||||||++|++++..+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 45677889999999999998887774 3358999999999999999999998753
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.45 E-value=3e-13 Score=123.27 Aligned_cols=186 Identities=17% Similarity=0.226 Sum_probs=109.8
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc--
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY-- 130 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~-- 130 (343)
++++|.....+.+.+.+.... ....++||+||||||||++|++++..+ +.+|+.++|..+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 357888888888777665321 345689999999999999999999865 57899999987643110
Q ss_pred ---cc----h---HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCCEE
Q psy7809 131 ---GE----S---EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKGVL 194 (343)
Q Consensus 131 ---~~----~---~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~v~ 194 (343)
|. . .......|..+ ..++|||||+|.+.. .....|+..++... .. .....+.
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~---------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 139 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP---------LMQVRLLRAIQEREVQRVGSNQTISVDVR 139 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH---------HHHHHHHHHHHSSBCCBTTBCCCCBCCCE
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH---------HHHHHHHHHHhcCEeeecCCcccccCCeE
Confidence 00 0 00011223333 247999999998832 34556666665322 00 0123578
Q ss_pred EEEecCCC-------CCCCHHHhccccCc-ch------HHH----HHhhhhcCC----C----CCCcccHHHHHHHc-cC
Q psy7809 195 VLAATNHP-------WDLDEALKRRFEKR-IS------PIQ----IIGLCLGEI----R----KDPNVDVATLSKQL-IG 247 (343)
Q Consensus 195 vI~ttn~~-------~~l~~~l~~rf~~~-i~------r~~----il~~~~~~~----~----~~~~~~~~~la~~t-~g 247 (343)
||++||.+ ..+.+.+.+||... +. |.+ +++.++... . ..++..+..|.... .|
T Consensus 140 iI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpG 219 (304)
T 1ojl_A 140 LIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPG 219 (304)
T ss_dssp EEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSS
T ss_pred EEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCC
Confidence 99999875 23556777776422 21 222 333333221 1 11223344555554 33
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy7809 248 YSGSDIRDLCQEIILIA 264 (343)
Q Consensus 248 ~s~~di~~l~~~A~~~a 264 (343)
+.++|.+++++|+..+
T Consensus 220 -nvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 220 -NIRELENAIERAVVLL 235 (304)
T ss_dssp -HHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHhC
Confidence 5677777877776543
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.44 E-value=9.2e-13 Score=121.68 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=109.5
Q ss_pred cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------------------
Q psy7809 59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------------------- 116 (343)
Q Consensus 59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------------------- 116 (343)
..+++..+.+...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 5 pw~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34566677777666432 455679999999999999999999988643
Q ss_pred --eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCC
Q psy7809 117 --FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGD 190 (343)
Q Consensus 117 --~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 190 (343)
++.+.+.+- ........++.++..+.. ..+.|++|||+|.+. ....+.|++.++.. +
T Consensus 74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~---------~~a~naLLk~lEep-----~ 136 (334)
T 1a5t_A 74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT---------DAAANALLKTLEEP-----P 136 (334)
T ss_dssp TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC---------HHHHHHHHHHHTSC-----C
T ss_pred CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC---------HHHHHHHHHHhcCC-----C
Confidence 233332210 011123446666665542 235799999999983 24567888888753 4
Q ss_pred CCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809 191 KGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQE 259 (343)
Q Consensus 191 ~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~ 259 (343)
.++++|++|+.++.+.+++++|+...-. ..++..+..... ..++..+..++..+.| +.+.+.++++.
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-TMSQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred CCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 4788899999999999999998653222 333333322222 2344556788888877 56665555443
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.43 E-value=4.7e-14 Score=114.15 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=77.2
Q ss_pred cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHH
Q psy7809 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKL 136 (343)
Q Consensus 57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~ 136 (343)
+++|.+..++.+.+.+.... ....+++|+||||||||++|++++.... +++.++|..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57888888888887765321 3456899999999999999999998888 99999998765432
Q ss_pred HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 137 VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 137 i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
...++..+ ..++|||||+|.+.. .....|+..++... ..++.+|++||.+
T Consensus 67 ~~~~~~~a---~~~~l~lDei~~l~~---------~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKA---EGGVLYVGDIAQYSR---------NIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHT---TTSEEEEEECTTCCH---------HHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred hhhHHHhC---CCCeEEEeChHHCCH---------HHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 34445444 347999999998832 33445555555332 2256788888754
No 82
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.43 E-value=2.1e-13 Score=100.59 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=62.9
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809 219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ 298 (343)
Q Consensus 219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (343)
|.+||+.+++...+..++|++.||+.|+||||+||.++|++|.+.|+++...
T Consensus 6 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~---------------------------- 57 (88)
T 3vlf_B 6 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------------------- 57 (88)
T ss_dssp HHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS----------------------------
T ss_pred HHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc----------------------------
Confidence 8999999999998889999999999999999999999999999999987321
Q ss_pred cCCCCCCcccccHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q psy7809 299 VAPLGSDRIVLNRSHFERAKEKCRKSVD-GALIRKYKRWN 337 (343)
Q Consensus 299 ~~~~~~~~~~lt~~df~~Al~~~~p~~~-~~~~~~~~~~~ 337 (343)
+ |+.+||..|++++.++.. .+....|..|+
T Consensus 58 --~-------i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 58 --V-------ATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp --S-------BCHHHHHHHHHHHTC---------------
T ss_pred --c-------CCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 2 999999999999998874 45688888885
No 83
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.36 E-value=2.2e-13 Score=99.52 Aligned_cols=78 Identities=24% Similarity=0.259 Sum_probs=61.7
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809 219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ 298 (343)
Q Consensus 219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (343)
|.+||+.+++......++|++.||..|+||||+||.++|+.|...|+++..
T Consensus 6 R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------------------- 56 (83)
T 3aji_B 6 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR----------------------------- 56 (83)
T ss_dssp HHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-----------------------------
T ss_pred HHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------------------
Confidence 889999999998878899999999999999999999999999999886531
Q ss_pred cCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809 299 VAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK 334 (343)
Q Consensus 299 ~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~ 334 (343)
.+ |+.+||..|++.++|+++ ++++.|+
T Consensus 57 -~~-------i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 57 -YI-------VLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp -SS-------BCHHHHHHHHHHHCC-----------
T ss_pred -CC-------cCHHHHHHHHHHHccCch-HHHHhcC
Confidence 13 999999999999999998 7887774
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.8e-11 Score=111.32 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh------CCceEEEcCCccccccccch
Q psy7809 60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH------GSTFFNVLPSSLTSKHYGES 133 (343)
Q Consensus 60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l------~~~~~~v~~~~l~~~~~~~~ 133 (343)
|++++.+.|...+... . ..++|||||||+|||++|+++|+.+ ...++.+++.+- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 6677788888777542 2 4689999999999999999999864 346677765420 122
Q ss_pred HHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHH
Q psy7809 134 EKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL 209 (343)
Q Consensus 134 ~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l 209 (343)
...++.++..+... ...|+||||+|.+. ....+.|++.|+.. +.++++|++|+.++.+.+++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt---------~~a~naLLk~LEep-----~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT---------QQAANAFLKALEEP-----PEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC---------HHHHHHTHHHHHSC-----CTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC---------HHHHHHHHHHHhCC-----CCCeEEEEEECChHhChHHH
Confidence 33466677666432 23699999999983 34577899999854 44778888889999999999
Q ss_pred hcc
Q psy7809 210 KRR 212 (343)
Q Consensus 210 ~~r 212 (343)
++|
T Consensus 130 ~SR 132 (305)
T 2gno_A 130 KSR 132 (305)
T ss_dssp HTT
T ss_pred Hce
Confidence 999
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.29 E-value=2.4e-11 Score=114.86 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=117.8
Q ss_pred CCCcccccHHHHHHHHHHH-hccccChHHHhccCCCCceEEE--EcCCCchHHHHHHHHHHHh---------CCceEEEc
Q psy7809 54 GWDDIAGLDNVKQIFKETL-LLPKLMPQLFKGILRPWRGILL--FGPPGTGKTLLAKAVASQH---------GSTFFNVL 121 (343)
Q Consensus 54 ~~~~l~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~vll--~Gp~GtGKT~la~~ia~~l---------~~~~~~v~ 121 (343)
..++++|.+...+.|...+ ..... +....+..++| +||+|+|||++++.+++.+ +..+++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3468999999888888776 42110 00023467899 9999999999999999876 45677787
Q ss_pred CCccccc-------------c---ccc-hHHHHHHHHHHHH-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc
Q psy7809 122 PSSLTSK-------------H---YGE-SEKLVRALFETAR-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG 183 (343)
Q Consensus 122 ~~~l~~~-------------~---~~~-~~~~i~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~ 183 (343)
|...... . .+. ....+..+..... ...|.||+|||+|.+..... .....+..++..+..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~---~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR---IAAEDLYTLLRVHEE 170 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT---SCHHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC---cchHHHHHHHHHHHh
Confidence 6432110 0 011 1122233333222 24578999999999854211 012344455555543
Q ss_pred CCCCCCCCCEEEEEecCCCC---CCC---HHHhccccCcch--------HHHHHhhhhcCC---CCCCcccHHHHHHHcc
Q psy7809 184 VGTGSGDKGVLVLAATNHPW---DLD---EALKRRFEKRIS--------PIQIIGLCLGEI---RKDPNVDVATLSKQLI 246 (343)
Q Consensus 184 ~~~~~~~~~v~vI~ttn~~~---~l~---~~l~~rf~~~i~--------r~~il~~~~~~~---~~~~~~~~~~la~~t~ 246 (343)
........++.+|++++.++ .++ +.+.++|..++. ..+++...+... ....+..+..++..+.
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 32000013788888887665 233 555566544443 444554433311 1223445778889998
Q ss_pred ------CCCHHHHHHHHHHHHHHHH
Q psy7809 247 ------GYSGSDIRDLCQEIILIAA 265 (343)
Q Consensus 247 ------g~s~~di~~l~~~A~~~a~ 265 (343)
| .++.+..++..|...+.
T Consensus 251 ~~~~~~G-~p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 251 EDKGGDG-SARRAIVALKMACEMAE 274 (412)
T ss_dssp GGGTSCC-CHHHHHHHHHHHHHHHH
T ss_pred HhccCCC-cHHHHHHHHHHHHHHHH
Confidence 7 58888888888776654
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=7.6e-12 Score=104.89 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=81.4
Q ss_pred cCCCCCCCcccc----cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEE
Q psy7809 49 TDTGVGWDDIAG----LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNV 120 (343)
Q Consensus 49 ~~~~~~~~~l~G----~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v 120 (343)
++...+|+++++ +..+.+.+.+++.... ...+.+++|+||+|||||+++++++..+ +..++++
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 455678988875 4455555665554321 1345789999999999999999999877 5566666
Q ss_pred cCCccccccccchHHH-HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809 121 LPSSLTSKHYGESEKL-VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199 (343)
Q Consensus 121 ~~~~l~~~~~~~~~~~-i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt 199 (343)
++.++........... ...++. ....|.+|+|||++.... .......+..++..... .+..+|.||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~~~----~~~~~~~l~~ll~~~~~-------~~~~ii~ts 140 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSERL----SDWQRELISYIITYRYN-------NLKSTIITT 140 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSSCC----CHHHHHHHHHHHHHHHH-------TTCEEEEEC
T ss_pred EHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCCcC----CHHHHHHHHHHHHHHHH-------cCCCEEEEc
Confidence 6555443211100000 001111 123578999999985421 12223333344433311 134566677
Q ss_pred CCC-CCCC-------HHHhccccCcc
Q psy7809 200 NHP-WDLD-------EALKRRFEKRI 217 (343)
Q Consensus 200 n~~-~~l~-------~~l~~rf~~~i 217 (343)
|.+ +.+. +.+.+|+...+
T Consensus 141 n~~~~~~~~~~~~~~~~l~~~~~~~i 166 (180)
T 3ec2_A 141 NYSLQREEESSVRISADLASRLGENV 166 (180)
T ss_dssp CCCSCC---CHHHHHHHHHHHHCHHH
T ss_pred CCChhHhhhhccchhhHHHHHHHHHH
Confidence 765 4432 35555655544
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.25 E-value=8.6e-12 Score=134.35 Aligned_cols=148 Identities=20% Similarity=0.168 Sum_probs=101.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhccccC----------hHHHhc-------------------cCCCCceEEEEcCCCc
Q psy7809 50 DTGVGWDDIAGLDNVKQIFKETLLLPKLM----------PQLFKG-------------------ILRPWRGILLFGPPGT 100 (343)
Q Consensus 50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~----------~~~~~~-------------------~~~~~~~vll~Gp~Gt 100 (343)
.+..+|+++.|+++.|+.+.+.+.+++.. +..+.. +.+.++.+++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34488999999999999999988887622 222222 1233345999999999
Q ss_pred hHHHHHHHHHHHh---CCceEEEcCCccc------------cccccc----hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809 101 GKTLLAKAVASQH---GSTFFNVLPSSLT------------SKHYGE----SEKLVRALFETARARAPAVIFIDEVDAFC 161 (343)
Q Consensus 101 GKT~la~~ia~~l---~~~~~~v~~~~l~------------~~~~~~----~~~~i~~~~~~a~~~~p~il~iDeid~l~ 161 (343)
|||++|++++.+. +.+.++++..+.. .+++++ .++.++.+|..|+...|+++++|++|.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999766 5566666666544 445555 78889999999999999999999999998
Q ss_pred CCC------C--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809 162 SGS------R--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201 (343)
Q Consensus 162 ~~~------~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~ 201 (343)
+.. . +.....+++++++..+++..... +|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~---~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS---NTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT---TCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccC---CeEEE-Eecc
Confidence 741 1 12455678889999988754433 77777 4454
No 88
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.20 E-value=1.8e-12 Score=94.27 Aligned_cols=79 Identities=23% Similarity=0.182 Sum_probs=50.1
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809 219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ 298 (343)
Q Consensus 219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (343)
|.+||+.+++...+..++|++.||..|+||||+||.++|+.|...|+++...
T Consensus 3 R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~---------------------------- 54 (82)
T 2dzn_B 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY---------------------------- 54 (82)
T ss_dssp -----------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCS----------------------------
T ss_pred HHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC----------------------------
Confidence 7789999999887778999999999999999999999999999999977321
Q ss_pred cCCCCCCcccccHHHHHHHHHhc-CCCCCHHHHHHHH
Q psy7809 299 VAPLGSDRIVLNRSHFERAKEKC-RKSVDGALIRKYK 334 (343)
Q Consensus 299 ~~~~~~~~~~lt~~df~~Al~~~-~p~~~~~~~~~~~ 334 (343)
+ |+.+||..|++.+ .|+.+.++++.|+
T Consensus 55 --~-------i~~~df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 55 --V-------ILQSDLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp --E-------ECHHHHHHHHHTTCC------------
T ss_pred --C-------cCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence 2 9999999999999 4778888887774
No 89
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.19 E-value=9.8e-12 Score=91.02 Aligned_cols=69 Identities=19% Similarity=0.363 Sum_probs=62.6
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809 219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ 298 (343)
Q Consensus 219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (343)
|.+||+.+++...+..++|++.||+.|+||||+||.++|++|...|+++...
T Consensus 16 R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~---------------------------- 67 (86)
T 2krk_A 16 RLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV---------------------------- 67 (86)
T ss_dssp HHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCS----------------------------
T ss_pred HHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 9999999999998888999999999999999999999999999999977421
Q ss_pred cCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809 299 VAPLGSDRIVLNRSHFERAKEKCRKS 324 (343)
Q Consensus 299 ~~~~~~~~~~lt~~df~~Al~~~~p~ 324 (343)
+ |+.+||..|++.++|.
T Consensus 68 --~-------I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 68 --H-------VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp --E-------ECHHHHHHHHHHHHCC
T ss_pred --C-------CCHHHHHHHHHHHccC
Confidence 2 9999999999998775
No 90
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.11 E-value=5.1e-11 Score=85.72 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=61.1
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809 219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ 298 (343)
Q Consensus 219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (343)
|.+||+.+++......++|++.||+.|+||||+||.++|+.|...|+++...
T Consensus 8 R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~---------------------------- 59 (78)
T 3kw6_A 8 RLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV---------------------------- 59 (78)
T ss_dssp HHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS----------------------------
T ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC----------------------------
Confidence 8999999999998788999999999999999999999999999999977321
Q ss_pred cCCCCCCcccccHHHHHHHHHhcCC
Q psy7809 299 VAPLGSDRIVLNRSHFERAKEKCRK 323 (343)
Q Consensus 299 ~~~~~~~~~~lt~~df~~Al~~~~p 323 (343)
+ |+.+||..|++++..
T Consensus 60 --~-------i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 60 --H-------VTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --E-------ECHHHHHHHHHHHHC
T ss_pred --C-------CCHHHHHHHHHHHHh
Confidence 2 999999999998754
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.09 E-value=1.1e-10 Score=94.90 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~ 164 (343)
+...++|+||+|+|||+|+++++..+ |..+++++..++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 34679999999999999999999887 666888887766543 11235789999999886321
Q ss_pred CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC--HHHhccccC
Q psy7809 165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD--EALKRRFEK 215 (343)
Q Consensus 165 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~--~~l~~rf~~ 215 (343)
....+..++..+. ... ..++||++...|..+. +.+.+|+..
T Consensus 99 -----~~~~l~~li~~~~---~~g--~~~iiits~~~p~~l~~~~~L~SRl~~ 141 (149)
T 2kjq_A 99 -----EQALLFSIFNRFR---NSG--KGFLLLGSEYTPQQLVIREDLRTRMAY 141 (149)
T ss_dssp -----HHHHHHHHHHHHH---HHT--CCEEEEEESSCTTTSSCCHHHHHHGGG
T ss_pred -----HHHHHHHHHHHHH---HcC--CcEEEEECCCCHHHccccHHHHHHHhc
Confidence 1222223333221 111 1224444443565443 788888754
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.02 E-value=6.2e-10 Score=94.81 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=60.4
Q ss_pred CCCCCCcccccH----HHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 51 TGVGWDDIAGLD----NVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 51 ~~~~~~~l~G~~----~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
...+|+++++.. .+.+.+..++.... ....+.+++|+||+|||||++|++++..+ +.+++.+++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE--------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC--------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh--------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 456899988754 23444444443210 00123789999999999999999999887 5677778776
Q ss_pred ccccccccchH-HHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809 124 SLTSKHYGESE-KLVRALFETARARAPAVIFIDEVDAFC 161 (343)
Q Consensus 124 ~l~~~~~~~~~-~~i~~~~~~a~~~~p~il~iDeid~l~ 161 (343)
++......... ..+..++.... .+.+|+|||++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 55432111000 00122222222 23699999997653
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.95 E-value=1.6e-09 Score=102.51 Aligned_cols=139 Identities=19% Similarity=0.142 Sum_probs=82.3
Q ss_pred ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHH-HHHhCCceEEEcC-C---ccccccccc
Q psy7809 58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV-ASQHGSTFFNVLP-S---SLTSKHYGE 132 (343)
Q Consensus 58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~i-a~~l~~~~~~v~~-~---~l~~~~~~~ 132 (343)
|+|++.+|..|.-.+...-.. .....++||.|+||+ ||++|+++ +..+....+.... + .+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999988888666432111 122348999999999 99999999 6655443322110 0 111100000
Q ss_pred h-HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC----CCCCCCCEEEEEecCCCC----
Q psy7809 133 S-EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG----TGSGDKGVLVLAATNHPW---- 203 (343)
Q Consensus 133 ~-~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~~~v~vI~ttn~~~---- 203 (343)
. ...-...+..|. ..++|||||+.+ ....+..|++.|+.-. +..-+.++.||+|+|...
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~---------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGA---------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTC---------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CC
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhC---------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCC
Confidence 0 000001112221 279999999877 3455666777665311 001134789999999875
Q ss_pred -------CCCHHHhccccCc
Q psy7809 204 -------DLDEALKRRFEKR 216 (343)
Q Consensus 204 -------~l~~~l~~rf~~~ 216 (343)
.|++++++||+-.
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi 374 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLI 374 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEE
T ss_pred CCCccccCCChHHhhheeeE
Confidence 7899999999653
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.95 E-value=1.4e-09 Score=98.55 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=65.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~ 164 (343)
.++..++|+||||||||+||.++|...+.. |+.+...+....+.......+..++....... +|+||+++.+....
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 445568999999999999999999876544 44442133333333444555666666555543 99999999986532
Q ss_pred Cc---hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809 165 RE---HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA 208 (343)
Q Consensus 165 ~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~ 208 (343)
.. .....+.+.+++..|.++... .++.+|+++| +...+++
T Consensus 199 ~~~s~~G~v~~~lrqlL~~L~~~~k~---~gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 199 GGNTTSGGISRGAFDLLSDIGAMAAS---RGCVVIASLN-PTSNDDK 241 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHH---HTCEEEEECC-CSSCSSS
T ss_pred ccccccchHHHHHHHHHHHHHHHHhh---CCCEEEEEeC-Ccccchh
Confidence 11 000112233333333322111 1567788888 4444443
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.94 E-value=8.8e-09 Score=115.70 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=81.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHH-HHhCCceEEEcCCccccccccchHHHHHHHHHHHH---------------HcCCcE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVA-SQHGSTFFNVLPSSLTSKHYGESEKLVRALFETAR---------------ARAPAV 151 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia-~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~---------------~~~p~i 151 (343)
..+++||+||||||||++|+.+. ...+..++.++++...+ ...+...+.... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 45799999999999999995554 44466777777765432 123333333221 112369
Q ss_pred EEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC-----CCCEEEEEecCCCC-----CCCHHHhccccCcch---
Q psy7809 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG-----DKGVLVLAATNHPW-----DLDEALKRRFEKRIS--- 218 (343)
Q Consensus 152 l~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-----~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--- 218 (343)
|||||++......-+......++.++++. .++..... ..++.+|+++|.+. .++++++|||.....
T Consensus 1340 lFiDEinmp~~d~yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P 1418 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYP 1418 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCC
T ss_pred EEecccccccccccCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCC
Confidence 99999986443222222333444454432 12211110 12589999999995 799999999833221
Q ss_pred ----HHHHHhhhhcC
Q psy7809 219 ----PIQIIGLCLGE 229 (343)
Q Consensus 219 ----r~~il~~~~~~ 229 (343)
+..|+..++..
T Consensus 1419 ~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1419 SGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 77777766644
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.86 E-value=6.6e-08 Score=88.77 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=47.1
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
...+...-+.++|.+...+.|.+.+.. ...++|+||+|+|||+|++.++++.+ ++++++.
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 344555567899999999999887642 15799999999999999999999876 5666553
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.85 E-value=3.1e-09 Score=96.83 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=57.5
Q ss_pred CCCCCcccccH----HHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCC
Q psy7809 52 GVGWDDIAGLD----NVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPS 123 (343)
Q Consensus 52 ~~~~~~l~G~~----~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~ 123 (343)
..+|+++++.. .+.+.+..++.... .....+++|+||||||||+||+++|.++. .++.++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP---------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS---------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc---------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 46899988633 23334444443210 01257899999999999999999998654 677777766
Q ss_pred ccccccccch-HHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809 124 SLTSKHYGES-EKLVRALFETARARAPAVIFIDEVDAF 160 (343)
Q Consensus 124 ~l~~~~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l 160 (343)
++........ ...+..++... ..+.+|||||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 5543211100 00111122222 23469999999765
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.83 E-value=4.4e-09 Score=89.50 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=72.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH--------hC-CceEEEcCCccccccc----------cc-----hHHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ--------HG-STFFNVLPSSLTSKHY----------GE-----SEKLVRALFETAR 145 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~--------l~-~~~~~v~~~~l~~~~~----------~~-----~~~~i~~~~~~a~ 145 (343)
...|++|+||+|||++|...+.. .| .+++..++.++..... .. ....+..++. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-KP 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-SG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-cc
Confidence 46789999999999999886543 34 6677777766543221 00 1112222211 12
Q ss_pred HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809 146 ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS 218 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 218 (343)
....+||+|||++.+.+.........+ ++..++... ...+-||.+++.+..|+..+++|+...++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~r----ll~~l~~~r----~~~~~iil~tq~~~~l~~~lr~ri~~~~~ 149 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPE----NVQWLNTHR----HQGIDIFVLTQGPKLLDQNLRTLVRKHYH 149 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCH----HHHGGGGTT----TTTCEEEEEESCGGGBCHHHHTTEEEEEE
T ss_pred ccCceEEEEEChhhhccCccccchhHH----HHHHHHhcC----cCCeEEEEECCCHHHHhHHHHHHhheEEE
Confidence 234689999999999753321111112 333333211 22567788888899999999998877665
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=1.4e-07 Score=86.75 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=48.8
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
...+...-+.++|.+...+.|.. +.. ..++|+||+|+|||+|++.++++.+..++++++..
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 33455556789999999888887 531 47899999999999999999999877777777654
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.69 E-value=4.3e-08 Score=92.06 Aligned_cols=125 Identities=20% Similarity=0.281 Sum_probs=76.0
Q ss_pred CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCccccccc-
Q psy7809 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLTSKHY- 130 (343)
Q Consensus 55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~~~~~- 130 (343)
+..++|.....+.+.+.+... .....+++|+|++||||+++|+++..... .+|+.++|..+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 345666655555555444321 13446789999999999999999987764 6899999987643210
Q ss_pred ------------cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCCC-CCCC
Q psy7809 131 ------------GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTGS-GDKG 192 (343)
Q Consensus 131 ------------~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~~-~~~~ 192 (343)
|... .....|..|. .++||||||+.+ ...++..|+..++. ..... ....
T Consensus 206 ~elfg~~~g~~tga~~-~~~g~~~~a~---~gtlfldei~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 272 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVS-SKEGFFELAD---GGTLFLDEIGEL---------SLEAQAKLLRVIESGKFYRLGGRKEIEVN 272 (387)
T ss_dssp HHHHCBCTTSSTTCCS-CBCCHHHHTT---TSEEEEESGGGC---------CHHHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred HHhcCCCCCCCCCccc-ccCCceeeCC---CcEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 0000 0112333332 379999999988 33556666666653 11111 0125
Q ss_pred EEEEEecCCC
Q psy7809 193 VLVLAATNHP 202 (343)
Q Consensus 193 v~vI~ttn~~ 202 (343)
+.||++||..
T Consensus 273 ~rii~at~~~ 282 (387)
T 1ny5_A 273 VRILAATNRN 282 (387)
T ss_dssp CEEEEEESSC
T ss_pred EEEEEeCCCC
Confidence 7789999863
No 101
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.59 E-value=1.2e-07 Score=80.26 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
..++++||||||||||++|.++|+.+...++
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 3467999999999999999999999865443
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.57 E-value=7.7e-07 Score=82.91 Aligned_cols=124 Identities=22% Similarity=0.309 Sum_probs=75.1
Q ss_pred CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcccccccc--
Q psy7809 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTSKHYG-- 131 (343)
Q Consensus 56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~~~~~-- 131 (343)
.+++|.......+...+... ......++++|++||||+.+|+++....+.. |+.++|..+......
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 35677666555555444321 1334579999999999999999998877543 999999876432110
Q ss_pred ---ch-------HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-----CCCC-CCCCEEE
Q psy7809 132 ---ES-------EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV-----GTGS-GDKGVLV 195 (343)
Q Consensus 132 ---~~-------~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~-~~~~v~v 195 (343)
.. ...-...|..+ ..+.||||||+.+ ....+..|+..++.- .... ....+.+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 266 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGEL---------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRV 266 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGS---------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEE
T ss_pred hcCccccccCCcccccCChHhhc---CCCeEEecChhhC---------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEE
Confidence 00 00001123333 2368999999988 345666777766531 1110 0124678
Q ss_pred EEecCC
Q psy7809 196 LAATNH 201 (343)
Q Consensus 196 I~ttn~ 201 (343)
|++||.
T Consensus 267 i~at~~ 272 (368)
T 3dzd_A 267 ISATNK 272 (368)
T ss_dssp EEEESS
T ss_pred EEecCC
Confidence 888885
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.52 E-value=3.6e-07 Score=99.96 Aligned_cols=113 Identities=21% Similarity=0.239 Sum_probs=75.4
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----------------cccchHHHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----------------HYGESEKLVRALFETAR 145 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~a~ 145 (343)
++.++.+++|+||||||||+||.+++.+. |....+++..+.... .....+..+..++..+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 45678899999999999999999997765 456667766543211 12234566777777888
Q ss_pred HcCCcEEEEcccccccCCC------Cc-hh-hhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809 146 ARAPAVIFIDEVDAFCSGS------RE-HE-ATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~~~------~~-~~-~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn 200 (343)
..+|++|+||+++.+.+.. .+ .. ...+++.+++..|.++... .++++|+|..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~---~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ---SNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT---TTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh---CCcEEEEEcc
Confidence 8899999999999887621 11 11 1345666666666554332 2566665543
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.48 E-value=8.5e-07 Score=99.93 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=82.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHE 168 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~ 168 (343)
..+.++.||+|||||.+++.+|+.+|.+++.++|.+-... ..+..+|..+...+ +++++||++.+-. +
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~~~-----e 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRLDE-----K 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSSCH-----H
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhcCh-----H
Confidence 3578999999999999999999999999999999875532 34566676665544 7999999998732 1
Q ss_pred hhHHH---HHHHhhhccc----CC--C--CCCCCCEEEEEecC----CCCCCCHHHhccccCcch----HHHHHhhhhc
Q psy7809 169 ATRRV---RCELLSHMDG----VG--T--GSGDKGVLVLAATN----HPWDLDEALKRRFEKRIS----PIQIIGLCLG 228 (343)
Q Consensus 169 ~~~~~---~~~ll~~l~~----~~--~--~~~~~~v~vI~ttn----~~~~l~~~l~~rf~~~i~----r~~il~~~~~ 228 (343)
....+ +..+...+.. +. + ..-.....|++|.| ....|++++++||..... ...|.++.+.
T Consensus 713 vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 713 VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH
Confidence 11111 1111121110 00 0 01123567888888 445799999998854332 5555555443
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.35 E-value=2.4e-06 Score=71.12 Aligned_cols=26 Identities=38% Similarity=0.693 Sum_probs=22.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.+.|.||+|+|||||++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999987644
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.16 E-value=1.5e-05 Score=90.69 Aligned_cols=130 Identities=21% Similarity=0.144 Sum_probs=82.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEA 169 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~ 169 (343)
.+..+.||+|||||.+++.+|+.+|.+++.++|.+-... ..+..+|.-+...+ +..++|||+.+-. +.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~G-aW~cfDEfNrl~~-----~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQCG-AWGCFDEFNRLEE-----RI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHHT-CEEEEETTTSSCH-----HH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhcC-cEEEehhhhcCCH-----HH
Confidence 466899999999999999999999999999999775432 34556666555543 7899999988721 11
Q ss_pred hHH-------HHHHHhhhccc--CC-C--CCCCCCEEEEEecCC----CCCCCHHHhccccCcch----HHHHHhhhhcC
Q psy7809 170 TRR-------VRCELLSHMDG--VG-T--GSGDKGVLVLAATNH----PWDLDEALKRRFEKRIS----PIQIIGLCLGE 229 (343)
Q Consensus 170 ~~~-------~~~~ll~~l~~--~~-~--~~~~~~v~vI~ttn~----~~~l~~~l~~rf~~~i~----r~~il~~~~~~ 229 (343)
... +...+...... +. + ..-.....|++|.|. ...|++.++++|...-. ...|.+..+-.
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s 752 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYS 752 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHH
Confidence 111 11111111000 10 0 011235778888883 46899999998765332 66666665554
Q ss_pred CC
Q psy7809 230 IR 231 (343)
Q Consensus 230 ~~ 231 (343)
..
T Consensus 753 ~G 754 (3245)
T 3vkg_A 753 QG 754 (3245)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 107
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.15 E-value=1e-05 Score=74.72 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=51.7
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----------------cccchHHHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----------------HYGESEKLVRALFETAR 145 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~a~ 145 (343)
++.++..++|+||||+|||+|+..++..+ +..+++++....... ........+..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34566779999999999999999998764 566777766542210 01112233333333334
Q ss_pred HcCCcEEEEcccccccC
Q psy7809 146 ARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~ 162 (343)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999988875
No 108
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.13 E-value=2e-06 Score=75.91 Aligned_cols=27 Identities=44% Similarity=0.554 Sum_probs=24.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.++++||||||||||++|.++|+.+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999997654
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.12 E-value=6.3e-06 Score=70.40 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=32.5
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
++.++.-++|+||+|+|||++++.++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3466678999999999999999999986677777776544
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.10 E-value=2.1e-05 Score=67.56 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=59.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------c-------------------c
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------K-------------------H 129 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------~-------------------~ 129 (343)
+.++..++|+||+|+|||++++.++..+ +..+++++...... . +
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCcee
Confidence 3556678999999999999999998654 44555443321100 0 0
Q ss_pred ---ccchHHHHHHHHHHHHHcCCc--EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 130 ---YGESEKLVRALFETARARAPA--VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 130 ---~~~~~~~i~~~~~~a~~~~p~--il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
..........+...+....|. +|+|||+..+.... ......+...|....... ++.||.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d--~~~~~~~~~~l~~~~~~~-------~~~vi~~~h~~ 168 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK--PAMARKISYYLKRVLNKW-------NFTIYATSQYA 168 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC--GGGHHHHHHHHHHHHHHT-------TEEEEEEEC--
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC--HHHHHHHHHHHHHHHHhC-------CCeEEEEeccC
Confidence 001223334444445556889 99999999875321 122233444443332211 45666666554
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.07 E-value=8.6e-06 Score=70.66 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=50.1
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHH--h-------CCceEEEcCCccccc--------cc-----------------
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQ--H-------GSTFFNVLPSSLTSK--------HY----------------- 130 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~--l-------~~~~~~v~~~~l~~~--------~~----------------- 130 (343)
++.++..++|+||+|+|||++++.++.. + +...++++..+.... ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3456678999999999999999999985 2 345666665441000 00
Q ss_pred --cchHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 131 --GESEKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 131 --~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
......+..+...+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 00011223344444556789999999998865
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.01 E-value=2.3e-05 Score=68.16 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHH
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia 110 (343)
+.++..+.|.||+|+|||||++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4566779999999999999999998
No 113
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.01 E-value=4.6e-05 Score=69.98 Aligned_cols=151 Identities=12% Similarity=0.020 Sum_probs=83.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CC-ceEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEccccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GS-TFFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDA 159 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~-~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~ 159 (343)
.++.+|||||+|.||++.++.+++.+ +. +...+... .. . .++.++..+. .....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~--~----~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN--T----DWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT--C----CHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC--C----CHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45689999999999999999998765 22 21222111 10 1 1333443332 23357999999987
Q ss_pred -ccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC------CCCCHHHhccccCcch-------HHHHHhh
Q psy7809 160 -FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP------WDLDEALKRRFEKRIS-------PIQIIGL 225 (343)
Q Consensus 160 -l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~------~~l~~~l~~rf~~~i~-------r~~il~~ 225 (343)
+. ....+.|+..++.. +..+++|.+++.+ ..+.+++.+|....-. ....++.
T Consensus 88 kl~---------~~~~~aLl~~le~p-----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 88 GPN---------AAINEQLLTLTGLL-----HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCC---------TTHHHHHHHHHTTC-----BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred CCC---------hHHHHHHHHHHhcC-----CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 62 23455677777644 2244555444443 3456777775421111 3334444
Q ss_pred hhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809 226 CLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIIL 262 (343)
Q Consensus 226 ~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~ 262 (343)
.+..... .++..+..|+..+.| +.+++.+.++....
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 4433322 233446677777755 55666555554443
No 114
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.01 E-value=3.7e-06 Score=78.31 Aligned_cols=112 Identities=19% Similarity=0.085 Sum_probs=65.7
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC-C
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-S 164 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-~ 164 (343)
+.++..++|+||+|+||||++++++..++..++.+...+- .....+.. .....++++||++.+... .
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~------~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGV------AIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGG------GTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHH------hcchhHHHHHHHHHHHHHHh
Confidence 4667789999999999999999999988776555332220 00111111 123467899999988641 1
Q ss_pred C-chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch
Q psy7809 165 R-EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS 218 (343)
Q Consensus 165 ~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~ 218 (343)
. ...........+...+++ .+.|++++|+++.+ +.+++ +++..+.
T Consensus 234 ~l~~~~~~~~~~~l~~~ldG--------~v~v~~~tn~~~~l-~alf~pg~ld~~~~ 281 (377)
T 1svm_A 234 DLPSGQGINNLDNLRDYLDG--------SVKVNLEKKHLNKR-TQIFPPGIVTMNEY 281 (377)
T ss_dssp TCCCCSHHHHHHTTHHHHHC--------SSCEEECCSSSCCE-EECCCCEEEEECSC
T ss_pred hccccCcchHHHHHHHHhcC--------CCeEeeccCchhhH-HHhhcCcccChhHH
Confidence 1 000000012334444433 34578889999888 45555 5554443
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.99 E-value=2.5e-05 Score=72.42 Aligned_cols=78 Identities=24% Similarity=0.245 Sum_probs=50.6
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc----------------ccchHHHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH----------------YGESEKLVRALFETAR 145 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~----------------~~~~~~~i~~~~~~a~ 145 (343)
++.++..++|+||||+|||++|..++... +..+.+++...-.... .......+..+.....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34566789999999999999999998654 5677777664322110 0111222222222233
Q ss_pred HcCCcEEEEcccccccC
Q psy7809 146 ARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~ 162 (343)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45688999999999974
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.97 E-value=5.9e-05 Score=74.40 Aligned_cols=51 Identities=16% Similarity=0.080 Sum_probs=40.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHH
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
.+.....++|.+...+.|.+.+.... ...+.+.|+|++|+|||+||+.++.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34455679999999999998875321 2345689999999999999999964
No 117
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.92 E-value=1.4e-05 Score=76.50 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=36.0
Q ss_pred ccccccCCCCCCCccc-ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 44 KDIVQTDTGVGWDDIA-GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~-G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..++.+.+|+++- +|..+...+...+.. ....++|.|++|||||+++.+++..+
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3566778889999885 555555555554432 12379999999999999999998776
No 118
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.91 E-value=0.00016 Score=77.07 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=42.0
Q ss_pred cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+.....++|.++..+.|.+.+.... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3445556779999999999998885321 23456889999999999999998765
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.90 E-value=2.3e-05 Score=71.56 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=51.7
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCcccc-c--------------------cc---c
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTS-K--------------------HY---G 131 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~-~--------------------~~---~ 131 (343)
++.++..++|+||||+|||+++..+|... +..+++++...-.. . ++ .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666779999999999999999999765 45677776654210 0 00 0
Q ss_pred chH---HHHHHHHHHHHH-cCCcEEEEcccccccC
Q psy7809 132 ESE---KLVRALFETARA-RAPAVIFIDEVDAFCS 162 (343)
Q Consensus 132 ~~~---~~i~~~~~~a~~-~~p~il~iDeid~l~~ 162 (343)
... ..+..+...... ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 123344444455 6789999999998864
No 120
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.87 E-value=2.4e-05 Score=72.03 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=51.4
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCcccc-c-------c-----------------
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTS-K-------H----------------- 129 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~-~-------~----------------- 129 (343)
+++.++.-++|+||||+|||+++..+|... +..+++++...... . .
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 345666778999999999999999999862 45677776654211 0 0
Q ss_pred --ccchHHHHHHHHHHHHH--cCCcEEEEcccccccC
Q psy7809 130 --YGESEKLVRALFETARA--RAPAVIFIDEVDAFCS 162 (343)
Q Consensus 130 --~~~~~~~i~~~~~~a~~--~~p~il~iDeid~l~~ 162 (343)
.......+..+...... ..+.+|+||.+..+..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 00111222333344455 6688999999998874
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.87 E-value=2.5e-05 Score=89.03 Aligned_cols=123 Identities=21% Similarity=0.261 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCccccccccchHHHHHHHHHHH----HH------------cCCc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSSLTSKHYGESEKLVRALFETA----RA------------RAPA 150 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~------------~~p~ 150 (343)
...++||+||+|||||+++..+...+ +.+++.++++.-.. ...+...+... .. ....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 44689999999999998876655443 55677777765332 22333333321 00 1124
Q ss_pred EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC-----CCCCEEEEEecCCCC-----CCCHHHhccccCcc
Q psy7809 151 VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS-----GDKGVLVLAATNHPW-----DLDEALKRRFEKRI 217 (343)
Q Consensus 151 il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i 217 (343)
|+||||++.-....-+....-.++.+++..- +..... ...++.+|+|+|.|. .++++++|||....
T Consensus 1377 VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp EEEETTTTCCCCCTTSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred EEEecccCCCCccccccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence 9999999854322111222334444444321 111111 123678999999883 58999999886643
No 122
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.87 E-value=3.4e-05 Score=73.83 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=83.4
Q ss_pred CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe---------cC---CCCCCCHHHhccccCc
Q psy7809 149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA---------TN---HPWDLDEALKRRFEKR 216 (343)
Q Consensus 149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t---------tn---~~~~l~~~l~~rf~~~ 216 (343)
|.|+||||+|.| .....+.|++.++.. ...++|++| ++ .+..+++.+++||...
T Consensus 296 ~~VliIDEa~~l---------~~~a~~aLlk~lEe~-----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~ 361 (456)
T 2c9o_A 296 PGVLFVDEVHML---------DIECFTYLHRALESS-----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMII 361 (456)
T ss_dssp ECEEEEESGGGC---------BHHHHHHHHHHTTST-----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEE
T ss_pred ceEEEEechhhc---------CHHHHHHHHHHhhcc-----CCCEEEEecCCccccccccccccccccCChhHHhhccee
Confidence 469999999988 346778888888744 334544455 32 2678999999988764
Q ss_pred ch-------HHHHHhhhhcCCCC-CCcccHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy7809 217 IS-------PIQIIGLCLGEIRK-DPNVDVATLSKQL-IGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNN 287 (343)
Q Consensus 217 i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t-~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~ 287 (343)
-. ..++++..+..... .++..+..++..+ .| +++....+++.|...|..+...
T Consensus 362 ~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~----------------- 423 (456)
T 2c9o_A 362 RTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKD----------------- 423 (456)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCS-----------------
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCC-----------------
Confidence 22 44555544432221 2344567888888 66 7888888899888777654211
Q ss_pred CCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809 288 IGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322 (343)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~ 322 (343)
. |+.+|+..|+.-+-
T Consensus 424 -------------~-------v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 424 -------------S-------IEKEHVEEISELFY 438 (456)
T ss_dssp -------------S-------BCHHHHHHHHHHSC
T ss_pred -------------c-------cCHHHHHHHHHHhc
Confidence 2 99999999998873
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.86 E-value=4.9e-05 Score=70.10 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=49.8
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc----c------------cchHHHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH----Y------------GESEKLVRALFETAR 145 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~----~------------~~~~~~i~~~~~~a~ 145 (343)
++.++..++|+||||+|||+|+..++... +..+.+++...-.... . ......+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34566779999999999999999998654 5566666654321100 0 111222222222333
Q ss_pred HcCCcEEEEcccccccC
Q psy7809 146 ARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~ 162 (343)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45689999999999873
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.84 E-value=0.00012 Score=63.49 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=27.6
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
++.++..++|+||||+|||+++..++... +..+++++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566789999999999999998887543 44555554
No 125
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.80 E-value=1.3e-05 Score=66.72 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+..++|.|++||||||+++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999887653
No 126
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.80 E-value=1.8e-05 Score=65.30 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
..++|.|+||+||||+++.++..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 468999999999999999999999988877554
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.80 E-value=6.7e-05 Score=69.33 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=50.3
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc----c-----------cchHHHHHHHHH-HHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH----Y-----------GESEKLVRALFE-TAR 145 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~----~-----------~~~~~~i~~~~~-~a~ 145 (343)
++.++..++|+|+||+|||++|..++... +..+.+++...-.... . ......+..++. ...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34566789999999999999999998654 5677777764322100 0 001122222222 233
Q ss_pred HcCCcEEEEcccccccC
Q psy7809 146 ARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~ 162 (343)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999874
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.76 E-value=6.1e-05 Score=70.64 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=48.8
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCccccc---------------------ccc---
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTSK---------------------HYG--- 131 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~~---------------------~~~--- 131 (343)
++.+..-++|+||||+|||+|++.++... +...++++..+.... .+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 45666779999999999999999876433 233666665442110 000
Q ss_pred ---chHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809 132 ---ESEKLVRALFETARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 132 ---~~~~~i~~~~~~a~~~~p~il~iDeid~l~~ 162 (343)
.....+..+...+....|.+|+||++-.+..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0112233334444556789999999988775
No 129
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=1.6e-05 Score=67.13 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.++..++|.||+||||||+++.+|..++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 45568999999999999999999999998877653
No 130
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.76 E-value=0.0001 Score=63.90 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=57.7
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcCCccccc--------------------------------
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLPSSLTSK-------------------------------- 128 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~~~l~~~-------------------------------- 128 (343)
++.++.-++|+|+||+|||++|..+|.. .+.++++++...-...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 4466678999999999999999887643 3556666543211000
Q ss_pred ----------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 129 ----------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 129 ----------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
........+..+........+.++++|.+..+................|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~ 169 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL 169 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHH
Confidence 000112234445555667788899999998876432222333344445554444
No 131
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.74 E-value=6.5e-05 Score=82.59 Aligned_cols=78 Identities=27% Similarity=0.285 Sum_probs=54.3
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc----------------cchHHHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY----------------GESEKLVRALFETAR 145 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~----------------~~~~~~i~~~~~~a~ 145 (343)
++.++..++|+||||||||+|+.+++.+. |.+..+++..+...... ...+....-......
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46778899999999999999999997543 67788887766543211 111222222333344
Q ss_pred HcCCcEEEEcccccccC
Q psy7809 146 ARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 146 ~~~p~il~iDeid~l~~ 162 (343)
...|++|+||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999999954
No 132
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.68 E-value=7.1e-05 Score=64.17 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=24.5
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
++.++.-+.|.||+|+|||||++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566779999999999999999999754
No 133
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.66 E-value=4.1e-05 Score=63.89 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+..++|.|+||+||||+++.++..++..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3456789999999999999999999998876654
No 134
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.66 E-value=3.3e-05 Score=63.08 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=27.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.++|.|++|+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5789999999999999999999998876654
No 135
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.64 E-value=3.3e-05 Score=63.91 Aligned_cols=33 Identities=48% Similarity=0.722 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+..++|+|+||+||||+++.++..++..++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345799999999999999999999999877654
No 136
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.62 E-value=3.4e-05 Score=63.07 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
...+++|.|++||||||+++.+|..++.+++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 346899999999999999999999999988765
No 137
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.61 E-value=0.00014 Score=65.53 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=47.7
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCccccc----------------cccchHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSK----------------HYGESEKLVRALFET 143 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~ 143 (343)
++.+. -++|+||||+|||+|+-.++... +....+++..+-... .....+...-.+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34444 68999999999999988886543 566777776442210 001112210122222
Q ss_pred ---HHHcCCcEEEEcccccccC
Q psy7809 144 ---ARARAPAVIFIDEVDAFCS 162 (343)
Q Consensus 144 ---a~~~~p~il~iDeid~l~~ 162 (343)
.....|.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2345789999999999975
No 138
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.61 E-value=0.00012 Score=64.19 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 455679999999999999999999999866677776554
No 139
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.59 E-value=5e-05 Score=62.22 Aligned_cols=31 Identities=35% Similarity=0.698 Sum_probs=26.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
+..+.|.||+||||||+++.++..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3468999999999999999999999876554
No 140
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.58 E-value=0.00015 Score=66.85 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
+.++.-+.|+||+|+|||+|++.++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566678999999999999999999876
No 141
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.58 E-value=4e-05 Score=63.59 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=27.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.|+|.|+||+||||+++.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999998877653
No 142
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.58 E-value=0.00018 Score=66.38 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEc-CCccccc---------cccchHHHHHHHHHHHHHcCCcEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVL-PSSLTSK---------HYGESEKLVRALFETARARAPAVIF 153 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~-~~~l~~~---------~~~~~~~~i~~~~~~a~~~~p~il~ 153 (343)
+...++|.||+|+||||++++++..+. ..++.+. ..++... ..+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 344689999999999999999987652 3333321 1111110 0111112244567777788999999
Q ss_pred Ecccc
Q psy7809 154 IDEVD 158 (343)
Q Consensus 154 iDeid 158 (343)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99993
No 143
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.56 E-value=4.1e-05 Score=63.77 Aligned_cols=32 Identities=41% Similarity=0.632 Sum_probs=27.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH-hCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ-HGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~-l~~~~~~v 120 (343)
+..++|+|++||||||+++.++.. ++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 68776654
No 144
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.55 E-value=5.5e-05 Score=62.31 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=27.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999877654
No 145
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.55 E-value=0.00018 Score=63.42 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCcc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSL 125 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l 125 (343)
+.-|+|.|+||+||||+++.++.. .|..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456899999999999999999987 6777776665443
No 146
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.54 E-value=0.0004 Score=59.71 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=43.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc-------cccccccch-----HHHHHHHHHHHHH----cC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS-------LTSKHYGES-----EKLVRALFETARA----RA 148 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~-------l~~~~~~~~-----~~~i~~~~~~a~~----~~ 148 (343)
+..-++++||+|+||||++..++..+ +..++.+.+.. +... .|.. ......++..+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 34457788999999999999888766 45555553211 1111 1100 0112344554443 34
Q ss_pred CcEEEEcccccc
Q psy7809 149 PAVIFIDEVDAF 160 (343)
Q Consensus 149 p~il~iDeid~l 160 (343)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999876
No 147
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.54 E-value=0.00012 Score=66.68 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=24.0
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
++.++..++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456667999999999999999999875
No 148
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.53 E-value=0.00065 Score=64.25 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------ccccchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------KHYGESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------~~~~~~~~~i~~~~~~a 144 (343)
++..+++.|++|+||||++..+|..+ |..+..+.+..... .........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999998766 55565555432211 01122334456667777
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777799999988544
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.52 E-value=6.1e-05 Score=63.50 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+..|+|.|+||+||||+++.++..++.+++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 344689999999999999999999999887654
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.51 E-value=5.9e-05 Score=63.04 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+..++|.|+|||||||+++.++..++.+++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3456799999999999999999999999876654
No 151
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.49 E-value=6.4e-05 Score=62.37 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=27.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..++|.|+|||||||+++.++..++.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 34689999999999999999999998765543
No 152
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.49 E-value=6e-05 Score=62.93 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=22.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNV 120 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v 120 (343)
.-++++||+|+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999997666543 5544443
No 153
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=5.3e-05 Score=63.60 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.49 E-value=6.2e-05 Score=62.71 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
.++..+.|.||+|+||||+++.++..++...+.++..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 45567899999999999999999988776666666544
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.49 E-value=7.1e-05 Score=65.78 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=28.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
.++|.||+||||||+++.+|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877654
No 156
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.49 E-value=8.8e-05 Score=63.50 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
++..++|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 446789999999999999999999999876654
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.47 E-value=6.6e-05 Score=62.57 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 35689999999999999999999999876543
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.46 E-value=8.9e-05 Score=62.53 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=28.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..++|.|++|+||||+++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998776654
No 159
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.46 E-value=6.9e-05 Score=61.31 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.|++|+||||+++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999876654
No 160
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.46 E-value=0.00012 Score=63.82 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+..|+|.||||+||||+++.++..++..++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4567899999999999999999999998776654
No 161
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.45 E-value=0.00017 Score=61.89 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=25.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
..+++.|++|+||||++-.+|..+ |..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999999999999999998765 556554443
No 162
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.45 E-value=0.00014 Score=71.53 Aligned_cols=98 Identities=27% Similarity=0.379 Sum_probs=53.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc----hHHHHHHHHHHH---------HHcCCcEEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE----SEKLVRALFETA---------RARAPAVIF 153 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~----~~~~i~~~~~~a---------~~~~p~il~ 153 (343)
..++|.||||||||+++.+++..+ +..+..+.+..-......+ ....+..++... .....++|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 568999999999999999998754 4555544332211110000 000122222100 011346999
Q ss_pred EcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809 154 IDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202 (343)
Q Consensus 154 iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~ 202 (343)
|||+..+ ....+..|+..+. . ..+++++|-.+..
T Consensus 285 IDEasml---------~~~~~~~Ll~~~~---~---~~~lilvGD~~QL 318 (574)
T 3e1s_A 285 VDEVSMM---------GDALMLSLLAAVP---P---GARVLLVGDTDQL 318 (574)
T ss_dssp ECCGGGC---------CHHHHHHHHTTSC---T---TCEEEEEECTTSC
T ss_pred EcCccCC---------CHHHHHHHHHhCc---C---CCEEEEEeccccc
Confidence 9999665 2345556665543 1 2367777766653
No 163
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.44 E-value=0.00069 Score=58.75 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
.++++||+|+|||.++..++..++..++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 589999999999999999998887766666543
No 164
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.44 E-value=0.00032 Score=58.82 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=60.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc---------cccccc-------------c----chHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS---------LTSKHY-------------G----ESEKLVRAL 140 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~---------l~~~~~-------------~----~~~~~i~~~ 140 (343)
..+++|+++|.||||+|-.+|-+. |..+..+.... +..... . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468999999999999999997654 66666663221 111110 0 012234445
Q ss_pred HHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc
Q psy7809 141 FETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR 211 (343)
Q Consensus 141 ~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~ 211 (343)
+..+.. ...++|+|||+-....-+- --...++..+... +...-||.|.|.+. +.++.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~ev~~~l~~R-----p~~~~vIlTGr~ap---~~l~e 169 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEEVISALNAR-----PGHQTVIITGRGCH---RDILD 169 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHHHHHHHHTS-----CTTCEEEEECSSCC---HHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHHHHHHHHhC-----cCCCEEEEECCCCc---HHHHH
Confidence 555544 3468999999965322100 0011344444322 33567888888753 45554
No 165
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.41 E-value=7.7e-05 Score=64.22 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+..++|.|+||+||||+++.++..++..++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 446799999999999999999999998876654
No 166
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.41 E-value=0.00018 Score=64.42 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l 125 (343)
.+..++|.||||+||||+++.++.++...++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45678999999999999999999998655667766444
No 167
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.41 E-value=7.6e-05 Score=61.69 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=23.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
+..++|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999998876
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.40 E-value=8.6e-05 Score=62.16 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=27.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..++|.|+||+||||+++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35689999999999999999999999766554
No 169
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.40 E-value=0.00012 Score=62.64 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=28.2
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
...++.|+|.||||+||+|.|+.++..++.+.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 356677899999999999999999999986544
No 170
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.40 E-value=0.0001 Score=60.02 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=25.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888886654
No 171
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.38 E-value=0.0001 Score=62.11 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+..|+|.|++||||||+++.++..++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345689999999999999999999998876654
No 172
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.38 E-value=0.00015 Score=59.58 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
++..++|.||+|+||||+++.++..+|..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34568899999999999999999998866554
No 173
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.38 E-value=9.5e-05 Score=62.97 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=26.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877655
No 174
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.38 E-value=9e-05 Score=63.17 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.||||+||||+++.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998877655
No 175
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.38 E-value=9.8e-05 Score=60.13 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=26.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.|+|.|++|+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999887654
No 176
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.38 E-value=0.00057 Score=65.03 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=30.2
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~ 122 (343)
+++.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 445677779999999999999999997643 456666654
No 177
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.37 E-value=9e-05 Score=65.45 Aligned_cols=72 Identities=26% Similarity=0.384 Sum_probs=43.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEc-CCccccc---------cccchHHHHHHHHHHHHHcCCcEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVL-PSSLTSK---------HYGESEKLVRALFETARARAPAVI 152 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~-~~~l~~~---------~~~~~~~~i~~~~~~a~~~~p~il 152 (343)
.+...++|.||+|+||||++++++..+. ..++... .-+.... .++.....++..+..+....|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 4556789999999999999999987652 2222211 0010000 000011124556666666789999
Q ss_pred EEcccc
Q psy7809 153 FIDEVD 158 (343)
Q Consensus 153 ~iDeid 158 (343)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999993
No 178
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.37 E-value=8.9e-05 Score=60.96 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=23.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHH-HhCCce
Q psy7809 90 RGILLFGPPGTGKTLLAKAVAS-QHGSTF 117 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~-~l~~~~ 117 (343)
.-++|.|+||+||||+++.++. .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4688999999999999999998 455433
No 179
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.37 E-value=0.00015 Score=62.64 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+..++|.|+||+||||+++.+|..++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 445799999999999999999999999776654
No 180
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.37 E-value=0.00011 Score=60.98 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=23.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..++|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 181
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.36 E-value=0.00016 Score=60.91 Aligned_cols=32 Identities=38% Similarity=0.667 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
++..+.|.||+|+||||+++.++..+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 45578899999999999999999999765544
No 182
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.35 E-value=0.00016 Score=59.98 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=27.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..++|.|++||||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999999776654
No 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.35 E-value=0.0016 Score=58.71 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=45.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------ccccchHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------KHYGESEKLVRALFET 143 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------~~~~~~~~~i~~~~~~ 143 (343)
.++..++|.||+|+||||++..+|..+ +..+..+++..... ...+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 455678899999999999999999765 44454444322110 0011122223334555
Q ss_pred HHHcCCcEEEEccccc
Q psy7809 144 ARARAPAVIFIDEVDA 159 (343)
Q Consensus 144 a~~~~p~il~iDeid~ 159 (343)
+....|.+++||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5667789999998853
No 184
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.35 E-value=0.00012 Score=62.69 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.+..++|.|+||+||||+++.+|..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34578999999999999999999999976544
No 185
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.34 E-value=0.0013 Score=58.77 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-++|.||||+|||++++.+|..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 566778999999999999999998764
No 186
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.33 E-value=0.00058 Score=65.17 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=30.4
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~ 122 (343)
+++.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 345777789999999999999999998653 456666654
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.33 E-value=0.00084 Score=59.60 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+..++|+||+|+|||+|+..++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 556679999999999999999998643
No 188
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.33 E-value=0.00014 Score=62.11 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=27.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..++|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877665
No 189
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.30 E-value=0.00013 Score=66.91 Aligned_cols=30 Identities=23% Similarity=0.553 Sum_probs=26.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.+++|.|++|+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999887744
No 190
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.27 E-value=0.00019 Score=60.97 Aligned_cols=29 Identities=34% Similarity=0.645 Sum_probs=25.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.++|.||||+||+|.|+.+|+.++.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47889999999999999999999876544
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.24 E-value=0.00028 Score=58.14 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
.+..+.|.|++|+||||+++.++..+ |.+++.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 34568899999999999999999988 888887764
No 192
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.00021 Score=60.01 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVL 121 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~ 121 (343)
.+..|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 34578999999999999999999998 56666654
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.24 E-value=0.00024 Score=61.89 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=27.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
..+..+.|.||+|+||||+++.++..++...+.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 345679999999999999999999999875443
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.24 E-value=0.003 Score=57.21 Aligned_cols=39 Identities=18% Similarity=0.028 Sum_probs=29.9
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
+++.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 345677789999999999999999998654 345666543
No 195
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.23 E-value=0.00027 Score=60.47 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=26.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
..+.|.||+||||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999876554
No 196
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.22 E-value=0.00023 Score=60.55 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=26.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.|+||+||||+++.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999999877665
No 197
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.22 E-value=0.00091 Score=72.78 Aligned_cols=78 Identities=27% Similarity=0.296 Sum_probs=58.5
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCc----------------cccccccchHHHHHHHHHHHHH
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSS----------------LTSKHYGESEKLVRALFETARA 146 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~----------------l~~~~~~~~~~~i~~~~~~a~~ 146 (343)
.+..+.+.+|||+|||||+||-.++.+ .|....+++... +....+...+..+..+...++.
T Consensus 1428 ~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s 1507 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1507 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHc
Confidence 344456999999999999999888643 355666665532 2223445557778888888899
Q ss_pred cCCcEEEEcccccccCC
Q psy7809 147 RAPAVIFIDEVDAFCSG 163 (343)
Q Consensus 147 ~~p~il~iDeid~l~~~ 163 (343)
.++++|++|-+..|.+.
T Consensus 1508 ~~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1508 GAVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp TCCSEEEESCSTTCCCT
T ss_pred CCCCEEEEccHHhCCcc
Confidence 99999999999999874
No 198
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.21 E-value=0.00032 Score=59.01 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
.++..+.|.||+|+||||+++.++..+ |...+.++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 455678899999999999999999988 5543455443
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.21 E-value=0.00027 Score=58.73 Aligned_cols=31 Identities=29% Similarity=0.133 Sum_probs=27.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
.+.|.|++|+||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88877764
No 200
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.19 E-value=0.0018 Score=63.10 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=27.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh-------CCceEEEcCC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH-------GSTFFNVLPS 123 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~~v~~~ 123 (343)
.++|+.|.+|+|||++++.+...+ ...++.+++.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 589999999999999999986644 2357777765
No 201
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.19 E-value=0.00024 Score=64.49 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
..++|.||+|+|||++++.+|..++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988888754
No 202
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.18 E-value=0.00025 Score=59.47 Aligned_cols=28 Identities=29% Similarity=0.638 Sum_probs=25.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
.+.|.|++|+||||+++.++..++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999998654
No 203
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.16 E-value=0.0044 Score=52.51 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=35.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHhc-cccCh-HHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLL-PKLMP-QLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~-~~~~~-~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
...+|+++.-.+.+.+.+.+.-.. +...+ ...... .....+++.+|+|+|||..+-..+...
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 335688877677777777653211 11111 111111 223679999999999998776655443
No 204
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.16 E-value=0.00033 Score=60.61 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.+..+.|.||+|+||||+++.++..++.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 34578999999999999999999999876554
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.15 E-value=0.0011 Score=62.54 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------------------c-cccchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------------------K-HYGESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------------------~-~~~~~~~~i~~~~~~a 144 (343)
++..+++.||+|+||||++..+|..+ +..+..+.+..... . ............+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678899999999999999998766 55555554331110 0 0011122234445555
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
....+.+++||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5556789999988654
No 206
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.15 E-value=0.00029 Score=60.50 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998766554
No 207
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.13 E-value=0.00036 Score=58.16 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
|.|.|++||||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999998 88877654
No 208
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.11 E-value=0.00037 Score=61.02 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=29.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
+..+.|.|++|+||||+++.+|..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457999999999999999999999998877653
No 209
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.11 E-value=0.00019 Score=59.54 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=22.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.|+|.|+||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999886
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.09 E-value=0.00024 Score=59.79 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.+.|.|++||||||+++.++. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 578999999999999999999 887766553
No 211
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.08 E-value=0.00025 Score=65.88 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=43.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcC-Cccc-cc---cccc-----hHHHHHHHHHHHHHcCCcEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLP-SSLT-SK---HYGE-----SEKLVRALFETARARAPAVI 152 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~-~~l~-~~---~~~~-----~~~~i~~~~~~a~~~~p~il 152 (343)
.++..++|.||+|+||||++++++..+. ..++.+.. .++. .. ++.. ....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 4556789999999999999999987653 23333221 1110 00 0100 11123445556666789999
Q ss_pred EEcccc
Q psy7809 153 FIDEVD 158 (343)
Q Consensus 153 ~iDeid 158 (343)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999993
No 212
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.08 E-value=0.00018 Score=60.94 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.+.-|+|.|++||||||+++.++..++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 34578999999999999999999987644
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.07 E-value=0.00031 Score=58.95 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+.|.|++||||||+++.++..+|.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3578999999999999999999989877664
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.06 E-value=0.0045 Score=55.49 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP 122 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~ 122 (343)
..+..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 345678899999999999999998655 445555554
No 215
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.00041 Score=58.50 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=24.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
+.-|+|.|+||+||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468899999999999999999998763
No 216
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.03 E-value=0.00022 Score=60.43 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.+..|+|.|++|+||||+++.++..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998753
No 217
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.01 E-value=0.00051 Score=57.77 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=26.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+.|.|++|+||||+++.++..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 578999999999999999999999777654
No 218
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.01 E-value=0.00041 Score=58.54 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..+..++|.||+|+||||+++.++..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5667799999999999999999999874
No 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.00 E-value=0.002 Score=66.95 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
+|.+..++.|.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999988877531 22456889999999999999999853
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.00 E-value=0.00059 Score=59.77 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
++..+.|.||+|+||||+++.++..+|..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34568899999999999999999999976553
No 221
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.99 E-value=0.0057 Score=58.07 Aligned_cols=39 Identities=18% Similarity=0.028 Sum_probs=30.8
Q ss_pred ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
+++.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 345677789999999999999999987654 566776654
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.97 E-value=0.00046 Score=58.21 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+.|.||+||||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 578999999999999999987 78776643
No 223
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.96 E-value=0.00038 Score=63.42 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=29.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
+..++|.||+|+|||+|+..+|+.++..++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 3468899999999999999999999887776544
No 224
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.95 E-value=0.00063 Score=56.96 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+..+.|.|++||||||+++.++.. |.+++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 4457899999999999999999998 7766654
No 225
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.94 E-value=0.0007 Score=57.63 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.3
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..+.|.|++||||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45688999999999999999998 88766654
No 226
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.90 E-value=0.0062 Score=58.69 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=26.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh-------CCceEEEcCC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH-------GSTFFNVLPS 123 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~~v~~~ 123 (343)
..++|+.|++|+|||++++.+...+ ...++.+++.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4689999999999999999987533 2346666654
No 227
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.90 E-value=0.00083 Score=58.70 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCce--------EEEcCCcccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTF--------FNVLPSSLTS 127 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~--------~~v~~~~l~~ 127 (343)
.+..|.|.|++||||||+++.++..++.++ ..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 345688999999999999999999998763 3555555543
No 228
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.90 E-value=0.0043 Score=58.43 Aligned_cols=94 Identities=18% Similarity=0.284 Sum_probs=54.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEc-CCcccc
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVL-PSSLTS 127 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~-~~~l~~ 127 (343)
...++++.-.......+...+. .+...++|.||+|+||||++++++..+.. .++.+. ..++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 4566676544555555555432 23345889999999999999999988743 333332 111110
Q ss_pred c-----ccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809 128 K-----HYG-ESEKLVRALFETARARAPAVIFIDEVD 158 (343)
Q Consensus 128 ~-----~~~-~~~~~i~~~~~~a~~~~p~il~iDeid 158 (343)
. .+. ...-.+...+..+....|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 011 111123444555556789999999863
No 229
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.87 E-value=0.00076 Score=60.64 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
+.-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4567899999999999999999999877766543
No 230
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.86 E-value=0.0065 Score=59.01 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=60.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHH--HHHh--CCceEEEcCCccc------------------------c----------c
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAV--ASQH--GSTFFNVLPSSLT------------------------S----------K 128 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~i--a~~l--~~~~~~v~~~~l~------------------------~----------~ 128 (343)
.++..++|.||+|+|||||++.+ +... +...++++..+.. . .
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~ 116 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQE 116 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhh
Confidence 45677999999999999999994 3332 3333333322100 0 0
Q ss_pred ccc--chHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809 129 HYG--ESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205 (343)
Q Consensus 129 ~~~--~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l 205 (343)
... .................|.+|+||++-.+.+...........+..++..+... ++.+|.++.+.+.+
T Consensus 117 ~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-------g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 117 VVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-------GATTVMTTERIEEY 188 (525)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-------TCEEEEEEECSSSS
T ss_pred hhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-------CCEEEEEecCCCCc
Confidence 000 01223344445555667899999999776543222223333344444444321 34566666665543
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.85 E-value=0.0064 Score=50.83 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=16.5
Q ss_pred CceEEEEcCCCchHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ 108 (343)
..++++.+|+|+|||..+-.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36799999999999987443
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.85 E-value=0.0053 Score=59.27 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP 122 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~ 122 (343)
++.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45677779999999999999999998765 446666654
No 233
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.84 E-value=0.0011 Score=57.40 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+..+.|.|++|+||||+++.++..+|.+++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3455788999999999999999999999776543
No 234
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.83 E-value=0.0012 Score=62.18 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
.+.-++|.|+||+||||+++.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 34568899999999999999999988765443
No 235
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.81 E-value=0.00068 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678899999999999999999876
No 236
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.80 E-value=0.0053 Score=59.93 Aligned_cols=44 Identities=18% Similarity=0.018 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHH
Q psy7809 59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
+|.+..++.|.+.+.... ......+.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 499999999988774210 02346788999999999999999997
No 237
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.79 E-value=0.0006 Score=57.56 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh-CCceEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFN 119 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~ 119 (343)
.++.-+.|.|++|+||||+++.++..+ +..++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 445568899999999999999999877 544443
No 238
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.79 E-value=0.0011 Score=60.55 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCC-cccc----c---cccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPS-SLTS----K---HYGESEKLVRALFETARARAPAVIFIDEV 157 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~-~l~~----~---~~~~~~~~i~~~~~~a~~~~p~il~iDei 157 (343)
+...++|.||+|+||||++++++..+.. ..+.+... ++.. . ++.+.....+..+..+....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 4457999999999999999999987642 23333321 1110 0 11001122445556666778999999998
Q ss_pred c
Q psy7809 158 D 158 (343)
Q Consensus 158 d 158 (343)
-
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 4
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.78 E-value=0.00084 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.544 Sum_probs=22.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+.-+.|.||+|+|||||++.++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998763
No 240
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.77 E-value=0.0011 Score=56.46 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=27.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
..+.|.|++|||||++++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4688999999999999999999999776654
No 241
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.76 E-value=0.0047 Score=51.88 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999988777643
No 242
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.76 E-value=0.00099 Score=55.18 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVL 121 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~ 121 (343)
..+..++|.|++|+||||+++.++..++ ..+..++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3456788999999999999999998874 3444444
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.75 E-value=0.0012 Score=55.93 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPS 123 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~ 123 (343)
..+..++|.|++|+||||+++.++..++ .+++.++..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 4456788999999999999999998764 456666543
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.74 E-value=0.00084 Score=56.90 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++.-+.|.||+|+||||+++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456688999999999999999998875
No 245
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.73 E-value=0.00085 Score=59.79 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=26.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
+..|.|.|++||||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568899999999999999999 678766554
No 246
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.73 E-value=0.00084 Score=61.26 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=27.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.-++|.||+|+|||++++.+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 36889999999999999999999986665554
No 247
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.72 E-value=0.0028 Score=62.68 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=20.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
...+++.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999988876554
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.71 E-value=0.0012 Score=54.97 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=21.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+.|+|.||+|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3589999999999999999988764
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.69 E-value=0.0011 Score=55.61 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
++.-+.|.||+|+||||+++.++..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999998753
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.68 E-value=0.0012 Score=54.72 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=21.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.++|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.68 E-value=0.00097 Score=56.07 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
++..+.|.||+|+|||||++.++..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 445789999999999999999998764
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.65 E-value=0.0011 Score=59.61 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35788999999999999999999886665544
No 253
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.62 E-value=0.0014 Score=55.39 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=27.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
..|.|.|++|||||++++.+|..+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999874
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.61 E-value=0.0011 Score=59.24 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=23.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh-CCceE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH-GSTFF 118 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l-~~~~~ 118 (343)
.-++|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458899999999999999999874 54444
No 255
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.56 E-value=0.0082 Score=58.27 Aligned_cols=96 Identities=21% Similarity=0.149 Sum_probs=55.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc--------------------------ccccc--chH
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT--------------------------SKHYG--ESE 134 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~--------------------------~~~~~--~~~ 134 (343)
+.++..++|.||+|+|||+|++.++... |...+++...+-. ..... ...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3566779999999999999999998654 3344444332110 00000 123
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809 135 KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182 (343)
Q Consensus 135 ~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~ 182 (343)
...+.++..+....|.+|+||=+-.|...... ......+..++..+.
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~-~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALARGVSN-NAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHhhCCh-HHHHHHHHHHHHHHH
Confidence 34555666677788999999966555432111 113344444555443
No 256
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.54 E-value=0.0012 Score=55.45 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.+.+++|.||+|+|||++|..++.+.. .++..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 346799999999999999999998865 544443
No 257
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.53 E-value=0.0052 Score=62.53 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=39.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHhccccCh-HHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 51 TGVGWDDIAGLDNVKQIFKETLLLPKLMP-QLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~-~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
+...|+++.-.+.+.+.+...-..|.... ......+.....+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568887777777777766554443221 112222344467999999999999987777544
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.52 E-value=0.0016 Score=55.01 Aligned_cols=27 Identities=37% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
++..+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999887
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.52 E-value=0.0014 Score=54.30 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=21.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 260
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.51 E-value=0.0019 Score=53.95 Aligned_cols=70 Identities=24% Similarity=0.220 Sum_probs=40.8
Q ss_pred CceEEEEcCCCchHH-HHHHHHHHHh--CCceEEEcCC---ccccccccchH--------HHHHHHHHHHHHcCCcEEEE
Q psy7809 89 WRGILLFGPPGTGKT-LLAKAVASQH--GSTFFNVLPS---SLTSKHYGESE--------KLVRALFETARARAPAVIFI 154 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT-~la~~ia~~l--~~~~~~v~~~---~l~~~~~~~~~--------~~i~~~~~~a~~~~p~il~i 154 (343)
..-.++|||.|+||| .|.+++.+.. +..++.+.+. ........... ....+++... ....+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEEE
Confidence 345788999999999 8888886543 5667776543 11111000000 0112233322 23579999
Q ss_pred cccccc
Q psy7809 155 DEVDAF 160 (343)
Q Consensus 155 Deid~l 160 (343)
||+.-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999877
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.51 E-value=0.0015 Score=55.28 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++.-+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456788999999999999999998875
No 262
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.51 E-value=0.0017 Score=60.57 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=27.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45789999999999999999999987666543
No 263
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.50 E-value=0.012 Score=58.64 Aligned_cols=71 Identities=24% Similarity=0.245 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHH
Q psy7809 60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKL 136 (343)
Q Consensus 60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~ 136 (343)
-.+.+++++...+... .-.||.||||||||+++-.+...+ +..+..+.. +...
T Consensus 190 LN~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~----------TN~A 245 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP----------SNIA 245 (646)
T ss_dssp CCHHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES----------SHHH
T ss_pred CCHHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC----------chHH
Confidence 3578888888766421 246899999999998665554333 334433332 2344
Q ss_pred HHHHHHHHHHcCCcEEEE
Q psy7809 137 VRALFETARARAPAVIFI 154 (343)
Q Consensus 137 i~~~~~~a~~~~p~il~i 154 (343)
+..+..........++-+
T Consensus 246 vD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 246 VDNLVERLALCKQRILRL 263 (646)
T ss_dssp HHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHhcCCceEEe
Confidence 555555555555455544
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.003 Score=53.09 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=27.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
..+.-+.|.|++|+||||+++.++..+ +..++.++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 344568899999999999999999876 55555553
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.43 E-value=0.0019 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.+.-+.|.||+|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 266
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.40 E-value=0.0072 Score=57.12 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
.+..++|.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999998766 4566666654
No 267
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.40 E-value=0.0024 Score=51.69 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455568899999999999999999987
No 268
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.39 E-value=0.002 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|+|||||++.++..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455678899999999999999999876
No 269
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.36 E-value=0.0023 Score=54.05 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++.-+.|.||+|+|||||++.++..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4556688999999999999999998874
No 270
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.36 E-value=0.012 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455678899999999999999999765
No 271
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.36 E-value=0.0022 Score=54.85 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++.-+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 5566788999999999999999998764
No 272
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.34 E-value=0.01 Score=57.17 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------------------cc-ccchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------------------KH-YGESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------------------~~-~~~~~~~i~~~~~~a 144 (343)
.+..|+|.|++|+||||++..+|..+ |..+..+++..... .. .......+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999766 55665555421110 00 011122233445555
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
.+....++|||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5456689999987554
No 273
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.34 E-value=0.0034 Score=61.96 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS 123 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~ 123 (343)
.+..|+|.|.+|+||||+++.++..+ +.+++.++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 44568999999999999999999999 8898888643
No 274
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.33 E-value=0.0028 Score=54.63 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC--CceEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG--STFFN 119 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~ 119 (343)
.+.-+.|.||+|+||||+++.++..++ ..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 455688999999999999999999986 34443
No 275
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.32 E-value=0.0012 Score=55.87 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
-+.|.|++|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999998853
No 276
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.31 E-value=0.019 Score=59.18 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
+..++|.||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 44688999999999999999874
No 277
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.30 E-value=0.017 Score=49.06 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=16.8
Q ss_pred CCceEEEEcCCCchHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ 108 (343)
....+++.+|+|+|||..+-.
T Consensus 56 ~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHHH
Confidence 346799999999999986543
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.28 E-value=0.0029 Score=61.23 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=44.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCC-ccccc-----------cccchHHHHHHHHHHHHHcCCcEEE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPS-SLTSK-----------HYGESEKLVRALFETARARAPAVIF 153 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~-~l~~~-----------~~~~~~~~i~~~~~~a~~~~p~il~ 153 (343)
.+.+++|.||+|+||||++++++..+.. ..+.+... ++... ..+.....+..++..+..+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 4457999999999999999999987642 33443221 12110 0000011234455556667899999
Q ss_pred Ecccc
Q psy7809 154 IDEVD 158 (343)
Q Consensus 154 iDeid 158 (343)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99984
No 279
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.25 E-value=0.024 Score=54.90 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=23.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP 122 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~ 122 (343)
...+++.+|+|+|||......+-..+...+.+.+
T Consensus 40 g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P 73 (523)
T 1oyw_A 40 GRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP 73 (523)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECS
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECC
Confidence 3579999999999998665554444444444443
No 280
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.23 E-value=0.0019 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.7
Q ss_pred CCCceEEEEcCCCchHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ 108 (343)
.++.-+.|.||+|+||||+++.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3455688999999999999995
No 281
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.20 E-value=0.0028 Score=52.36 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=27.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~ 124 (343)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999987 87887876644
No 282
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.20 E-value=0.016 Score=54.75 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccccc--------------------cchHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSKHY--------------------GESEKLVRALFET 143 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~~~--------------------~~~~~~i~~~~~~ 143 (343)
++..+++.|++|+||||++-.+|..+ |..+..+++.-...... ......+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999998665 66676666643221100 0112233555666
Q ss_pred HHHcCCcEEEEcccccc
Q psy7809 144 ARARAPAVIFIDEVDAF 160 (343)
Q Consensus 144 a~~~~p~il~iDeid~l 160 (343)
+.+....+++||-...+
T Consensus 179 ~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhCCCCEEEEECCCcc
Confidence 66555689999986433
No 283
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.20 E-value=0.0034 Score=54.52 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
.++.-+-|.||.|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344557899999999999999999988754
No 284
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.17 E-value=0.022 Score=51.52 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
.++..++|.|++|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456678899999999999999998765 445555443
No 285
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.17 E-value=0.0066 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..+.-+.|.||+|+||||+++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455688999999999999999998875
No 286
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.17 E-value=0.0036 Score=56.33 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
+.++..+.|+||+|+|||||++.++..+..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 366678999999999999999999988743
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.12 E-value=0.023 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+..+.|.|++|+||||+++.++..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 445568899999999999999999765
No 288
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.12 E-value=0.0041 Score=53.47 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=26.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.+-|.|+||+||||+++.++..++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 467899999999999999999999876654
No 289
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.11 E-value=0.0038 Score=53.59 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN 119 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~ 119 (343)
..|.|.|++|||||++++.+|..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457889999999999999999999988765
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.11 E-value=0.022 Score=50.97 Aligned_cols=73 Identities=26% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------c--c---cc-chHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------K--H---YG-ESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------~--~---~~-~~~~~i~~~~~~a 144 (343)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... - . .+ ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45567888999999999999998765 44554444321100 0 0 00 1122234556666
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
....+.+|+||+.-.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567789999998444
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.09 E-value=0.012 Score=52.75 Aligned_cols=72 Identities=21% Similarity=0.118 Sum_probs=45.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------------------ccc-cchHHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------------------KHY-GESEKLVRALFETAR 145 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------------------~~~-~~~~~~i~~~~~~a~ 145 (343)
+..+++.|++|+||||++..+|..+ +..+..+++.-... ... ......+...+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5568889999999999999998766 55666555432110 000 112233445666666
Q ss_pred HcCCcEEEEcccccc
Q psy7809 146 ARAPAVIFIDEVDAF 160 (343)
Q Consensus 146 ~~~p~il~iDeid~l 160 (343)
+....+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 566689999986444
No 292
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0053 Score=55.18 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455678899999999999999999875
No 293
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.99 E-value=0.0079 Score=55.48 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=44.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcC-Cccccc-------ccc-c-------hHHHHHHHHHHHHHcC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLP-SSLTSK-------HYG-E-------SEKLVRALFETARARA 148 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~-~~l~~~-------~~~-~-------~~~~i~~~~~~a~~~~ 148 (343)
.+...++|.||+|+||||++++++..+.. ..+.+.. .++... ++. . ....+...+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 45568999999999999999999987642 2333321 111100 111 0 1112445566666678
Q ss_pred CcEEEEcccc
Q psy7809 149 PAVIFIDEVD 158 (343)
Q Consensus 149 p~il~iDeid 158 (343)
|..++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8999999984
No 294
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.97 E-value=0.022 Score=49.00 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.5
Q ss_pred CceEEEEcCCCchHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ 108 (343)
...+++.+|+|+|||..+-.
T Consensus 66 g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHHH
Confidence 35799999999999987543
No 295
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.97 E-value=0.042 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
....+.|.|+||+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999998775
No 296
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.91 E-value=0.003 Score=56.51 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=24.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCcc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSL 125 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l 125 (343)
.-|.|.||+|+||||+++.++..++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4578999999999999999998776 33445554443
No 297
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.89 E-value=0.01 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
+..++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3468999999999999999887654
No 298
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.87 E-value=0.0026 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=16.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHH-HHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVA-SQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia-~~l 113 (343)
.++.-+.|.||+|+||||+++.++ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344568899999999999999999 765
No 299
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.86 E-value=0.0058 Score=55.21 Aligned_cols=28 Identities=18% Similarity=0.038 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..+.-+.|.||+|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4556688999999999999999998763
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.011 Score=48.69 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
...+.+.+.+.+...... .......+++.|++|+|||+|+.+++...
T Consensus 26 ~~~l~~~l~~~~~~~~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456666666555322111 11344579999999999999999998653
No 301
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.82 E-value=0.0073 Score=55.62 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 455678899999999999999999876
No 302
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.82 E-value=0.0062 Score=59.73 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPS 123 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~ 123 (343)
.+..|+|.|++|+||||++++++..++ .+++.++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 345688999999999999999999886 677777543
No 303
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.77 E-value=0.0058 Score=50.02 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+++|.|++|+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4578999999999999999999874
No 304
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.74 E-value=0.059 Score=55.75 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.8
Q ss_pred ceEEEEcCCCchHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia 110 (343)
.-++|.||.|+||||+.|.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999995
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.73 E-value=0.0068 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45578899999999999999999776
No 306
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.72 E-value=0.0049 Score=53.31 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++..+.|.||+|+|||||++.++....
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5566788999999999999999997653
No 307
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.71 E-value=0.0066 Score=58.85 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.+.-|+|.|.||+||||+++.++..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456889999999999999999998843
No 308
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.70 E-value=0.052 Score=49.73 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=31.6
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChH---HHhccC-CCCceEEEEcCCCchHHHHHHHHH
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQ---LFKGIL-RPWRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~---~~~~~~-~~~~~vll~Gp~GtGKT~la~~ia 110 (343)
.+|+++.-.+.+.+.+...-.. ...+. ...... ..+.++++.+|+|+|||..+-..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~-~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQ-KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4566665556666666542111 11111 111111 234789999999999998765444
No 309
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.68 E-value=0.008 Score=51.89 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=23.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+.-+.|.|++|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999984
No 310
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.66 E-value=0.0078 Score=54.54 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.+.-+.|.||+||||||+++.++..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999999998875
No 311
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.64 E-value=0.014 Score=49.66 Aligned_cols=31 Identities=23% Similarity=0.114 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
.+.-+.|.|++|+||||+++.++..++....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 3456889999999999999999999987443
No 312
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.61 E-value=0.0056 Score=52.98 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556678899999999999999998754
No 313
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.60 E-value=0.0086 Score=48.96 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+.|.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999998876
No 314
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.60 E-value=0.014 Score=49.45 Aligned_cols=32 Identities=9% Similarity=-0.100 Sum_probs=23.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
.-.+++||.|+|||+.+-..+..+ +..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345688999999999888887655 55665554
No 315
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.57 E-value=0.0088 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998775
No 316
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.57 E-value=0.011 Score=57.03 Aligned_cols=28 Identities=18% Similarity=0.006 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.+..++|.|.+||||||+++++|..++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3457889999999999999999999985
No 317
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.55 E-value=0.032 Score=50.85 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+..+.|.||||+|||||.++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445568899999999999999998765
No 318
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.54 E-value=0.0035 Score=55.01 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
..+.-|+|.|++|+||||+++.++..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456688999999999999999999984
No 319
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.53 E-value=0.0098 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=21.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..-+.|.|++|+||||+++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999998765
No 320
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.51 E-value=0.005 Score=52.80 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++..+.|.||.|+|||||++.++..+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4555688999999999999999997653
No 321
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.49 E-value=0.012 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=19.8
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.+.-|.|.|++|+||||+++.++..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568889999999999999999887
No 322
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.47 E-value=0.0066 Score=59.17 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCCcc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPSSL 125 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~~l 125 (343)
..+..+.|.|++|+|||||+++++..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4556789999999999999999999885 34445655443
No 323
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.45 E-value=0.01 Score=53.42 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.+.-+.|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445678999999999999999999876
No 324
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.43 E-value=0.011 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=19.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
...-.++.|+||||||+++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 334578999999999999988874
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.43 E-value=0.0073 Score=49.49 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.+.|.|++|+|||||++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998764
No 326
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.41 E-value=0.0071 Score=53.18 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++..+.|.||.|+|||||++.++..+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556788999999999999999997653
No 327
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.40 E-value=0.077 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.||.|+||||+.|.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999854
No 328
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.40 E-value=0.0071 Score=52.53 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556678899999999999999998754
No 329
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.37 E-value=0.0097 Score=50.43 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=27.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~ 121 (343)
...|-|+|..||||||+++.++. +|.+++..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 35688999999999999999997 898877654
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.36 E-value=0.0084 Score=55.12 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|||||||.+.++...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455568899999999999999999754
No 331
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.35 E-value=0.0088 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.+ ..+.|.||.|+|||||++.++..+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 678899999999999999999765
No 332
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.34 E-value=0.012 Score=50.10 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=25.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC---CceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG---STFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v 120 (343)
+.-|.|.|++|+||||+++.++..+. .+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 34578889999999999999998874 444444
No 333
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.33 E-value=0.0094 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.++..+.|.||.|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55567889999999999999999975
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.31 E-value=0.0081 Score=52.75 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 556678999999999999999998754
No 335
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.29 E-value=0.0083 Score=53.03 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 555678899999999999999998754
No 336
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.28 E-value=0.0067 Score=51.63 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++.-+.|.||.|+|||||++.++..+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4455688999999999999999987653
No 337
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.27 E-value=0.066 Score=45.84 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=21.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
.-.+++|+.|+|||+.+-..+... +..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 446788999999997766665443 44554443
No 338
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.27 E-value=0.0084 Score=52.74 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++..+.|.||.|+|||||++.++..+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 5556788999999999999999997653
No 339
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.27 E-value=0.062 Score=50.50 Aligned_cols=73 Identities=26% Similarity=0.283 Sum_probs=44.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc-------------------ccc-chHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK-------------------HYG-ESEKLVRALFETA 144 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~-------------------~~~-~~~~~i~~~~~~a 144 (343)
++..+++.|++|+||||++..+|..+ +..+..+++.-.... ..+ .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678888999999999999999776 445555444211100 000 1122234556655
Q ss_pred HHcCCcEEEEcccccc
Q psy7809 145 RARAPAVIFIDEVDAF 160 (343)
Q Consensus 145 ~~~~p~il~iDeid~l 160 (343)
.....++++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5455679999866443
No 340
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.24 E-value=0.0088 Score=52.15 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.++..+.|.||.|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566889999999999999999975
No 341
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.24 E-value=0.054 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.7
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
...+++++|+|+|||.++-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 3578999999999999987777654
No 342
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.23 E-value=0.0075 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|+|||||++.++..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678899999999999999998765
No 343
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.22 E-value=0.061 Score=49.02 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.....+.|.|++|+||||++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445678899999999999999998764
No 344
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.21 E-value=0.0076 Score=52.82 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999998765
No 345
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.20 E-value=0.0077 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455678899999999999999999765
No 346
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.20 E-value=0.028 Score=56.49 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=18.4
Q ss_pred CCceEEEEcCCCchHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAV 109 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~i 109 (343)
...++++.||+|+|||+.+-..
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHHHH
Confidence 4578999999999999988543
No 347
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.19 E-value=0.0097 Score=54.56 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|||||||.+.+|...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455668899999999999999999754
No 348
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.17 E-value=0.0094 Score=52.20 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678899999999999999998764
No 349
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.17 E-value=0.0078 Score=53.32 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||.|+|||||++.++..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455568899999999999999998754
No 350
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.17 E-value=0.008 Score=52.10 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999998765
No 351
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.16 E-value=0.011 Score=54.38 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|||||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 455568899999999999999999754
No 352
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.16 E-value=0.011 Score=54.47 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|||||||.+.+|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455568899999999999999999764
No 353
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.16 E-value=0.012 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.+.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998765
No 354
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.15 E-value=0.0096 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 555678899999999999999998654
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.14 E-value=0.011 Score=54.72 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|||||||.+.++...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 455568899999999999999999755
No 356
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.13 E-value=0.021 Score=56.55 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.+.+++++...+.. ..+++.||||||||+++..++..+
T Consensus 182 n~~Q~~av~~~l~~---------------~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---------------PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHHTC---------------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC---------------CCeEEECCCCCCHHHHHHHHHHHH
Confidence 46666666655421 357899999999999888776543
No 357
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.13 E-value=0.0075 Score=57.66 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.+..|+|.|.||+||||+++.++..++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3457899999999999999999988753
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.10 E-value=0.012 Score=54.50 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+.-+.|.||+|||||||.+.+|...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455668899999999999999999754
No 359
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.08 E-value=0.0085 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|+|||||++.++..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455668899999999999999998754
No 360
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.08 E-value=0.075 Score=52.27 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=21.5
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
...+++.+|+|+|||......+-......+.+
T Consensus 59 g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVi 90 (591)
T 2v1x_A 59 GKEVFLVMPTGGGKSLCYQLPALCSDGFTLVI 90 (591)
T ss_dssp TCCEEEECCTTSCTTHHHHHHHHTSSSEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCcEEEE
Confidence 35799999999999986655544333333333
No 361
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.07 E-value=0.0088 Score=52.15 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++..+.|.||.|+|||||++.++..+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4555688999999999999999987653
No 362
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.06 E-value=0.01 Score=54.48 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|||||||.+.++...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999754
No 363
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.06 E-value=0.0097 Score=50.38 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=20.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
+..+.|.||.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999875
No 364
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.04 E-value=0.015 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+.-|.|.|++|+||||+++.++..+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688899999999999999998773
No 365
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.03 E-value=0.017 Score=49.41 Aligned_cols=28 Identities=25% Similarity=0.141 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.+.-|.|.|++|+||||+++.++..++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456788899999999999999987654
No 366
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.03 E-value=0.097 Score=56.42 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
++++..+.|+||+|+|||||++.+...+.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 36677899999999999999999998764
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.00 E-value=0.014 Score=53.86 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
...+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568899999999999999999987643
No 368
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.00 E-value=0.01 Score=54.52 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++.-+.|.||+|||||||.+.+|...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455668899999999999999999754
No 369
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.00 E-value=0.013 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 370
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.99 E-value=0.013 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999875
No 371
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.97 E-value=0.0096 Score=52.85 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.++..+.|.||.|+|||||++.++..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4555688999999999999999997653
No 372
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.96 E-value=0.0099 Score=51.96 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||.|+|||||++.++..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999999765
No 373
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.95 E-value=0.02 Score=48.35 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
...++|.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 374
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.93 E-value=0.029 Score=51.14 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=29.8
Q ss_pred cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
++.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34666779999999999999999998664 566666654
No 375
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.93 E-value=0.012 Score=54.52 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+.|.||+|||||||.+.+|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 445568899999999999999999754
No 376
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.90 E-value=0.046 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.3
Q ss_pred CceEEEEcCCCchHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia 110 (343)
..++++.+|+|+|||..+-..+
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999554443
No 377
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.87 E-value=0.019 Score=48.27 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
....++|.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998754
No 378
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.82 E-value=0.017 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.+++.|++|+|||+|+.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 379
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.82 E-value=0.015 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.++.-+.|.||+|||||||++.++..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 55667889999999999999999964
No 380
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.79 E-value=0.012 Score=52.85 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
+.++..+.|.||+|+|||||++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3566779999999999999999998765
No 381
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.74 E-value=0.021 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999877
No 382
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.73 E-value=0.11 Score=48.60 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=25.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCC
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPS 123 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~ 123 (343)
++++.+|+|+|||..+-.++... +..++.+.+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 78999999999999988886654 5566666543
No 383
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.71 E-value=0.014 Score=52.04 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
+.++..+.|.||.|+|||||++.++..+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3556678899999999999999998765
No 384
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.65 E-value=0.11 Score=47.89 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=32.4
Q ss_pred CCCCcccccHHHHHHHHHHHhccccChH---HHhccCCCCceEEEEcCCCchHHHHHHHHH
Q psy7809 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQ---LFKGILRPWRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~---~~~~~~~~~~~vll~Gp~GtGKT~la~~ia 110 (343)
.+|+++.-.+.+.+.+...-... ..+. ..... .....+++.+|+|+|||..+-..+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~-~~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEK-PSAIQQRAILPC-IKGYDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCS-CCHHHHHHHHHH-HTTCCEEECCCSCSSSHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcCCCC-CCHHHHHHhHHH-hCCCCEEEECCCCCcccHHHHHHH
Confidence 45667666667777766532111 1111 11111 234579999999999998754443
No 385
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.63 E-value=0.015 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.4
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~ 111 (343)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999975
No 386
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.62 E-value=0.021 Score=45.43 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 387
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.60 E-value=0.043 Score=46.35 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
....++|.|++|+|||+|+..++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345688899999999999999998753
No 388
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.59 E-value=0.022 Score=54.20 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=27.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS 123 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~ 123 (343)
..+++.+|+|+|||.++-.++...+..++.+.+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3589999999999999988888887776666553
No 389
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.58 E-value=0.019 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~ 111 (343)
..+.|.|++|+|||+|+++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999985
No 390
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.58 E-value=0.036 Score=56.47 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.+.+++++...+.. ..++|.||||||||+++..++..+
T Consensus 358 n~~Q~~Av~~~l~~---------------~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---------------PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CHHHHHHHHHHHTS---------------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC---------------CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45666666655421 357899999999999888776543
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.54 E-value=0.022 Score=48.72 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v 120 (343)
.++.-+.|.|+.|+||||+++.++.. +..+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 34456789999999999999999987 4444433
No 392
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.54 E-value=0.016 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
+..+.|.||.|+|||||++.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5568899999999999999999765
No 393
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.54 E-value=0.021 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 394
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.54 E-value=0.026 Score=45.03 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.....+++.|++|+|||+|+.++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34467999999999999999999753
No 395
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.52 E-value=0.038 Score=46.57 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=24.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC--CceEEE
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHG--STFFNV 120 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v 120 (343)
-|.|.|+.|+||||+++.++..+. ..++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 467889999999999999999884 444443
No 396
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.51 E-value=0.023 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 397
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.51 E-value=0.23 Score=43.19 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.1
Q ss_pred ceEEEEcCCCchHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ 108 (343)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5789999999999987543
No 398
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.45 E-value=0.024 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 399
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.44 E-value=0.022 Score=52.47 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.++..+-|.||+|+|||||+++++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455678899999999999999998754
No 400
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.44 E-value=0.025 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 401
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.40 E-value=0.022 Score=45.73 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=19.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~ 111 (343)
..++|.|++|+|||+|++++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999999974
No 402
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.37 E-value=0.029 Score=45.14 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
.....|++.|++|+|||+|+.++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999999975
No 403
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.36 E-value=0.045 Score=45.75 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=24.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809 92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVL 121 (343)
Q Consensus 92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~ 121 (343)
|.|.|+.|+||||.++.++..+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999877 55665554
No 404
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.024 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+.-+.|.||.|+|||||+|.++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 455678999999999999999998754
No 405
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.36 E-value=0.026 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+++.|++|+|||+|++++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 406
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.35 E-value=0.026 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999854
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.32 E-value=0.032 Score=44.37 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.-.+|+||.|+|||++..+++-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998765
No 408
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.31 E-value=0.29 Score=46.94 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=24.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh--------CCceEEEcC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH--------GSTFFNVLP 122 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l--------~~~~~~v~~ 122 (343)
.++++.+|+|+|||..+-..+.+. +..++.+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 578999999999998877665443 445555544
No 409
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.29 E-value=0.025 Score=45.78 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+.|.|++|+|||+|+++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 410
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.28 E-value=0.026 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.28 E-value=0.027 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+++.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 412
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.27 E-value=0.027 Score=44.91 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999753
No 413
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.21 E-value=0.029 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 414
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.21 E-value=0.026 Score=45.06 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.6
Q ss_pred eEEEEcCCCchHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia 110 (343)
.+++.|++|+|||+|+.++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999996
No 415
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.17 E-value=0.026 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.|++|+|||+|+++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 416
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.17 E-value=0.029 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.+++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 417
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.16 E-value=0.088 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.2
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.||.|+||||+.|.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45889999999999999999854
No 418
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.16 E-value=0.029 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 419
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.14 E-value=0.14 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.4
Q ss_pred CceEEEEcCCCchHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia 110 (343)
+..++|.||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568899999999999999994
No 420
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.09 E-value=0.028 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~ 111 (343)
..+++.|++|+|||+|+.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999985
No 421
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.09 E-value=0.025 Score=44.98 Aligned_cols=21 Identities=43% Similarity=0.833 Sum_probs=18.9
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~ 111 (343)
.++|.|++|+|||+|++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999863
No 422
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.08 E-value=0.031 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 423
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.051 Score=55.42 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=17.4
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~ 111 (343)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998776654
No 424
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.06 E-value=0.014 Score=48.77 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.....+.|.|++|+|||||+++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999998743
No 425
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.04 E-value=0.054 Score=50.25 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45689999999999999999997654 455555543
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.04 E-value=0.048 Score=51.59 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
..+.-+.|.||+|+|||||++.++......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345568899999999999999999987543
No 427
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.01 E-value=0.03 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999854
No 428
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.99 E-value=0.03 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.98 E-value=0.057 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
.-++|.|+.|+||||+++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999754
No 430
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.97 E-value=0.03 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999865
No 431
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.96 E-value=0.035 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..+++.|++|+|||+|+.++....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 432
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.94 E-value=0.043 Score=49.33 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQHGSTF 117 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~ 117 (343)
.+.+++|.|++|+|||++|.++... |..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 4578999999999999999999875 4433
No 433
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.93 E-value=0.033 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|++.|++|+|||+|+.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 434
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.92 E-value=0.033 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 435
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.90 E-value=0.032 Score=44.96 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999743
No 436
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.45 Score=50.26 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP 122 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~ 122 (343)
....+|++||+|+|||.++-..+... +...+++.+
T Consensus 198 ~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 198 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp TTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 34689999999999999876554433 444444433
No 437
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.89 E-value=0.036 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
....+++.|++|+|||+|+.++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999753
No 438
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.89 E-value=0.04 Score=45.24 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...|+|.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999875
No 439
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.88 E-value=0.034 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 440
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.85 E-value=0.033 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.|++|+|||+|+.++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 441
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.81 E-value=0.038 Score=44.74 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.+++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 442
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.80 E-value=0.039 Score=45.95 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
....|+|.|++|+|||+|+.++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999854
No 443
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.80 E-value=0.036 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 444
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.79 E-value=0.23 Score=47.69 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=17.0
Q ss_pred CceEEEEcCCCchHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKA 108 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ 108 (343)
...+++.+|+|+|||.++-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 47899999999999987544
No 445
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.77 E-value=0.038 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+++.|++|+|||+|++++...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999863
No 446
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.75 E-value=0.087 Score=45.90 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.+.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999754
No 447
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.74 E-value=0.033 Score=44.89 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~ 111 (343)
..|++.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999964
No 448
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.74 E-value=0.049 Score=49.81 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGST 116 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~ 116 (343)
..+.-+.|.||+|+|||||++.++......
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345568899999999999999999987654
No 449
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.73 E-value=0.26 Score=47.42 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=24.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh--------CCceEEEcC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH--------GSTFFNVLP 122 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l--------~~~~~~v~~ 122 (343)
.++++.+|+|+|||..+-..+... +...+.+.+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 468999999999999877665443 445555544
No 450
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.69 E-value=0.08 Score=49.86 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=15.5
Q ss_pred ceEEEEcCCCchHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLA 106 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la 106 (343)
..+++.||+|+|||.++
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 57999999999999976
No 451
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.69 E-value=0.04 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVA 110 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia 110 (343)
....+++.|++|+|||+|+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999999886
No 452
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.042 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...++|.|++|+|||+|+.++...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999999764
No 453
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.69 E-value=0.041 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 454
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.69 E-value=0.039 Score=53.72 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=28.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPS 123 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~ 123 (343)
+..++|.|++|+||||+++.++..++ .++..++..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 45688999999999999999998774 456666543
No 455
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.68 E-value=0.041 Score=44.52 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+.++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999853
No 456
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.67 E-value=0.038 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999988764
No 457
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.65 E-value=0.049 Score=43.97 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 458
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.64 E-value=0.034 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~ 112 (343)
.+++.|++|+|||+|+.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999999753
No 459
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.63 E-value=0.033 Score=44.95 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+++.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 460
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=93.62 E-value=0.17 Score=52.82 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=28.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh---CC--ceEEEcCCcccc
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH---GS--TFFNVLPSSLTS 127 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~--~~~~v~~~~l~~ 127 (343)
..++||.++.|+|||..+-+++..+ +. +++.+.+..+..
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~ 213 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQH 213 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHH
Confidence 4678999999999999998887654 32 566666555543
No 461
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.62 E-value=0.04 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 462
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.61 E-value=0.04 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36999999999999999999864
No 463
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.047 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...|+|.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 464
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.59 E-value=0.038 Score=45.23 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999998887654
No 465
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.58 E-value=0.087 Score=45.58 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHHh--CCceEEEc
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQH--GSTFFNVL 121 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~l--~~~~~~v~ 121 (343)
....+++.|.+|+||||++..+|..+ +..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568889999999999999999776 45555554
No 466
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.57 E-value=0.2 Score=54.07 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 86 LRPWRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
++++..+-|+||+|+|||||++.+.+-+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4667789999999999999999998755
No 467
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.043 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.3
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
..|+|.|++|+|||+|+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 468
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.51 E-value=0.036 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCCce--EEEEcCCCchHHHHHHHHHHH
Q psy7809 87 RPWRG--ILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 87 ~~~~~--vll~Gp~GtGKT~la~~ia~~ 112 (343)
.++.. +.|.||+|+|||||+++++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34444 889999999999999999864
No 469
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.49 E-value=0.043 Score=45.35 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 470
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.47 E-value=0.044 Score=44.89 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 471
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.45 E-value=0.064 Score=50.23 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+.|.||+|+|||||.++++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 346789999999999999999873
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.45 E-value=0.055 Score=45.40 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQHGS 115 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~l~~ 115 (343)
.-.+|+||.|+|||++..+|...++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999877654
No 473
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.44 E-value=0.045 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 474
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.44 E-value=0.045 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.7
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 475
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.43 E-value=0.041 Score=47.62 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809 91 GILLFGPPGTGKTLLAKAVASQHGSTF 117 (343)
Q Consensus 91 ~vll~Gp~GtGKT~la~~ia~~l~~~~ 117 (343)
-+.|+|++|||||++++.+...+|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367999999999999999998888654
No 476
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.42 E-value=0.042 Score=49.37 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118 (343)
Q Consensus 87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~ 118 (343)
-.+.++||.|++|+|||++|..+.. -|..++
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 3457899999999999999988764 354433
No 477
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.41 E-value=0.047 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
....+++.|++|+|||+|+.++...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999753
No 478
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.41 E-value=0.02 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.7
Q ss_pred EEEcCCCchHHHHHHHHHHHhC
Q psy7809 93 LLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 93 ll~Gp~GtGKT~la~~ia~~l~ 114 (343)
.|.||+|+|||||+++++..+.
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcccc
Confidence 5789999999999999998764
No 479
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.41 E-value=0.047 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQHG 114 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l~ 114 (343)
+..+.|.||+|+|||||+++++....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34688999999999999999996543
No 480
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.40 E-value=0.048 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999754
No 481
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.40 E-value=0.47 Score=45.90 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCceEEEEcCCCchHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAK 107 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~ 107 (343)
....+++.+|+|+|||..+-
T Consensus 110 ~~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHH
Confidence 46789999999999998533
No 482
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.40 E-value=0.044 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 483
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.40 E-value=0.046 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.|++|+|||+|+.++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999854
No 484
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.054 Score=44.48 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
....|+|.|++|+|||+|+.++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457999999999999999999863
No 485
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.39 E-value=0.05 Score=44.39 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.|++|+|||+|+.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 486
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.38 E-value=0.051 Score=44.90 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...|+|.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999754
No 487
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.37 E-value=0.046 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.6
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
...|+|.|++|+|||+|+.++....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998653
No 488
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.36 E-value=0.047 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.9
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..++|.|++|+|||+|+.++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999865
No 489
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.35 E-value=0.046 Score=47.93 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..+.|.|++|+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999754
No 490
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.048 Score=44.59 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 491
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.30 E-value=0.046 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 492
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.29 E-value=0.05 Score=44.33 Aligned_cols=24 Identities=46% Similarity=0.504 Sum_probs=21.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...+++.|++|+|||+|++++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999754
No 493
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.29 E-value=0.057 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.8
Q ss_pred CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQH 113 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~l 113 (343)
...+.|.|+||+|||||..+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998754
No 494
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.054 Score=44.21 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCchHHHHHHHHHH
Q psy7809 88 PWRGILLFGPPGTGKTLLAKAVAS 111 (343)
Q Consensus 88 ~~~~vll~Gp~GtGKT~la~~ia~ 111 (343)
....|++.|++|+|||+|+.++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999984
No 495
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.27 E-value=0.047 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|++.++..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 496
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.25 E-value=0.049 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 497
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.24 E-value=0.048 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...|+|.|++|+|||+|+.++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346999999999999999999864
No 498
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.048 Score=45.49 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.6
Q ss_pred ceEEEEcCCCchHHHHHHHHHHH
Q psy7809 90 RGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 90 ~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
..|+|.|++|+|||+|++++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 499
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.13 E-value=0.09 Score=44.29 Aligned_cols=54 Identities=17% Similarity=-0.022 Sum_probs=32.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhccccChHHHh--ccCCCCceEEEEcCCCchHHHHH
Q psy7809 52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLA 106 (343)
Q Consensus 52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~--~~~~~~~~vll~Gp~GtGKT~la 106 (343)
..+|+++.-.+.+.+.+...-.. ...+.... ..+....++++.+|+|+|||..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFE-EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 35677776667777777654221 11111111 11123467999999999999873
No 500
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.12 E-value=0.057 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHHH
Q psy7809 89 WRGILLFGPPGTGKTLLAKAVASQ 112 (343)
Q Consensus 89 ~~~vll~Gp~GtGKT~la~~ia~~ 112 (343)
...++|.|++|+|||+|+.++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
Done!