RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7809
(343 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 222 bits (566), Expect = 5e-72
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 20/238 (8%)
Query: 46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTL 104
+ + + D+AG D K+ E + + P F+ + + +G+L+ GPPGTGKTL
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLR-EPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 105 LAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS-- 162
LAKA+A + FF + S G VR +FE A+ AP +IFIDE+DA
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 163 ---GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI 217
H+ + ++L MDG G++G++V+AATN P LD AL R RF++++
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
Query: 218 SP--------IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
QI+ + + + P++D A +++ G+SG+D+ +L E L AAR
Sbjct: 178 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 220 bits (562), Expect = 2e-71
Identities = 82/231 (35%), Positives = 118/231 (51%), Gaps = 20/231 (8%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
V + D+AG + K+ KE + K P F + R +G+LL GPPG GKT LA+AVA
Sbjct: 6 VTFKDVAGAEEAKEELKEIVEFLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 64
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS-----GSRE 166
+ F S G VR LFETA+ AP ++FIDE+DA
Sbjct: 65 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 124
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS---P-- 219
++ + +LL MDG D ++V+AATN P LD AL R RF+++I+ P
Sbjct: 125 NDEREQTLNQLLVEMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 181
Query: 220 ---IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
QI+ + +VD+A L+K+ G+ G+D+ +L E L+AARE
Sbjct: 182 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 232
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 181 bits (459), Expect = 6e-56
Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 19/236 (8%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
V W+DI GL++VK+ +E + P P F + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 63
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS-----GSRE 166
+ + F ++ L + +GESE VR +F+ AR AP V+F DE+D+
Sbjct: 64 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 123
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRISP----- 219
A RV ++L+ MDG+ S K V ++ ATN P +D A+ R R ++ I
Sbjct: 124 GGAADRVINQILTEMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180
Query: 220 ---IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA 272
+ I+ L + +VD+ L+K G+SG+D+ ++CQ +A RE I++
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 236
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 153 bits (386), Expect = 4e-45
Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 36/281 (12%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
VG+DD+ G KE + LP P LFK I ++P RGILL+GPPGTGKTL+A+AVA+
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GSREHEA 169
+ G+ FF + + SK GESE +R FE A APA+IFIDE+DA E
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 120
Query: 170 TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRISP-------- 219
RR+ +LL+ MDG+ V+V+AATN P +D AL+R RF++ +
Sbjct: 121 ERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177
Query: 220 IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNS 279
++I+ + ++ +VD+ ++ + G+ G+D+ LC E L A R+
Sbjct: 178 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK------------ 225
Query: 280 KPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEK 320
+ I + + +V + + + F A +
Sbjct: 226 ----KMDLIDLEDETIDAEVM----NSLAVTMDDFRWALSQ 258
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 118 bits (296), Expect = 2e-31
Identities = 41/246 (16%), Positives = 79/246 (32%), Gaps = 29/246 (11%)
Query: 37 ELTALVEKDIVQTDTGVGWDD--IAGLDNVKQIFKETLL--LPKLMPQLF-KGILRPWRG 91
+ A EK + D V + + + L L P + G R G
Sbjct: 65 RIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASG 124
Query: 92 ILLF-GPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSKHYGESEKLVRALFETARARA 148
+++ G +GKT L A+ G + V S + + V +
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIAR--AMLQ 182
Query: 149 PAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205
VI ID + + R +LLS + + + +G +V+A+ N P
Sbjct: 183 HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAM---AASRGCVVIASLN-PTSN 238
Query: 206 DEAL---KRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGY--SGSDIRDLCQEI 260
D+ + + + S + I D + + L++ G ++ E
Sbjct: 239 DDKIVELVKEASRSNSTSLV-------ISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEH 291
Query: 261 ILIAAR 266
++
Sbjct: 292 SVLTIH 297
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 98.2 bits (244), Expect = 8e-24
Identities = 37/255 (14%), Positives = 66/255 (25%), Gaps = 53/255 (20%)
Query: 39 TALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPP 98
+ DI + GV W L + + + L + I + R L GP
Sbjct: 112 GSTGSADIEEWMAGVAWLH-CLLPKMDSVVYDFL------KCMVYNIPKK-RYWLFKGPI 163
Query: 99 GTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-GESEKLVRALFETARA------RAPAV 151
+GKT LA A+ G NV G + +FE + P+
Sbjct: 164 DSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSG 223
Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG---------VLVLAATNHP 202
I+ +D L ++DG + +K + N
Sbjct: 224 QGINNLDN-----------------LRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN-- 264
Query: 203 WDLDEALKRRFEKRISPIQIIGLCLGEIRK---------DPNVDVATLSKQLIGYSGSDI 253
+ + L + +A L + ++
Sbjct: 265 -EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEF 323
Query: 254 RDLCQEIILIAAREV 268
Q I+ +
Sbjct: 324 AQSIQSRIVEWKERL 338
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 95.8 bits (237), Expect = 9e-24
Identities = 37/240 (15%), Positives = 83/240 (34%), Gaps = 25/240 (10%)
Query: 37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
+ + + I+ W D V ++ + LL + Q P +LL G
Sbjct: 2 DYASYIMNGII------KWGD-----PVTRVLDDGELLVQ---QTKNSDRTPLVSVLLEG 47
Query: 97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESE-KLVRALFETARARAPAVIFID 155
PP +GKT LA +A + F + ++ + ++ +F+ A + + +D
Sbjct: 48 PPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD 107
Query: 156 EVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA-LKRRFE 214
+++ + + +L++ T+ L E + F
Sbjct: 108 DIERLL-DYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS 166
Query: 215 KRI------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGS-DIRDLCQEIILIAARE 267
I + Q++ L + + + T+++Q+ G I+ L I + +
Sbjct: 167 TTIHVPNIATGEQLLEA-LELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 225
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 84.6 bits (208), Expect = 2e-19
Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 34/238 (14%)
Query: 53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112
V + D + + +E L+ K + LL G PG+GKT L A+ +
Sbjct: 4 VNFTDKQFENRLNDNLEE-LIQGKKAVE-------SPTAFLLGGQPGSGKTSLRSAIFEE 55
Query: 113 HGSTFFNVLPSSLTSKH---YGESEKLVRALFETARARAPAVIFIDEVDAFCSG-SREHE 168
+ + +H + + + + + + G + E
Sbjct: 56 TQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 115
Query: 169 ATRRVRCELLSHMDG---------VGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISP 219
T R + + + K L + R +P
Sbjct: 116 GTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPM--TARATP 173
Query: 220 IQIIGLCLGEIRKD----------PNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
Q + + + + ++ + + + YS + + + L
Sbjct: 174 KQAHDIVVKNLPTNLETLHKTGLFSDIRLY-NREGVKLYSSLETPSISPKETLEKELN 230
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 75.6 bits (185), Expect = 4e-16
Identities = 54/237 (22%), Positives = 84/237 (35%), Gaps = 21/237 (8%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQH 113
I G + K+ L QL + + + IL+ GP G GKT +A+ +A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 114 GSTFFNVLPSSLTSKHYGESEKLVRALFETARA-------RAPAVIFIDEVDAFCSGSRE 166
+ F V + T Y E T A ++FIDE+D C
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY 133
Query: 167 HEA---TRRVRCELLSHMDG--VGTGSGD---KGVLVLAA----TNHPWDLDEALKRRFE 214
A V+ +LL ++G V T G +L +A+ P DL L+ R
Sbjct: 134 SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP 193
Query: 215 KRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN 271
R+ + I +P+ + K L+ G +I + IA N
Sbjct: 194 IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 250
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 57.7 bits (138), Expect = 3e-10
Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 26/225 (11%)
Query: 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
D+ G + +KQ + L K P +LLFGPPG GKT LA +A + G
Sbjct: 8 LDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELG 60
Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEA-TRRV 173
S + G+ ++ E ++FIDE+ + EH
Sbjct: 61 VNLRVT--SGPAIEKPGDLAAILANSLEEGD-----ILFIDEIHRLSRQAEEHLYPAMED 113
Query: 174 RCELLSHMDGVGTGSG---DKGVLVLAATNHPWDLDEALKR--RFEKRISPIQIIGLCLG 228
+ G + ++ AT P + L + + L G
Sbjct: 114 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQG 173
Query: 229 EIRKDPNVDVATLSKQL---IGYSGSDIRD---LCQEIILIAARE 267
+R + V + S +R L + + A
Sbjct: 174 VMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVA 218
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 55.4 bits (132), Expect = 2e-09
Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 29/226 (12%)
Query: 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
D+ G +NVK+ L K+ +LL GPPG GKT LA +AS+
Sbjct: 8 LDEFIGQENVKKKLSLALEAAKMRG-------EVLDHVLLAGPPGLGKTTLAHIIASELQ 60
Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVR 174
+ +TS + + A+ + V+FIDE+ + + E +
Sbjct: 61 T------NIHVTSGPVLVKQGDMAAILTSLERG--DVLFIDEIHRL-NKAVEELLYSAIE 111
Query: 175 CELLSHMDGVGTGS------GDKGVLVLAATNHPWDLDEALKRR---FEKRISPIQIIGL 225
+ M G G + LV A T R E ++ +
Sbjct: 112 DFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKE 171
Query: 226 CLGEIRKDPNVDVATLSKQLI-GYSGSDIRD---LCQEIILIAARE 267
+ +V++ + ++I S R L + + +
Sbjct: 172 IIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 217
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 52.1 bits (123), Expect = 2e-08
Identities = 18/223 (8%), Positives = 45/223 (20%), Gaps = 35/223 (15%)
Query: 80 QLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLPSSLTSKHYGESEK 135
+ + L G PGTGKT+ + + + F + + E
Sbjct: 34 NWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 93
Query: 136 LVRALFETARARAPAVIFIDEVDAFCS--------GSREHEATRRVRCELLSHMDGVGTG 187
R F+ + + +
Sbjct: 94 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK 153
Query: 188 SGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLC----LGEIRK----------- 232
G + ++ ++ L+ + + +I
Sbjct: 154 LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGS 213
Query: 233 DPNVDVATLSKQLIGYSGSDI--------RDLCQEIILIAARE 267
+ ++ + D D+ A +
Sbjct: 214 YSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN 256
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 50.9 bits (121), Expect = 1e-07
Identities = 36/228 (15%), Positives = 67/228 (29%), Gaps = 22/228 (9%)
Query: 89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLV----------- 137
+ IL+ GP G GKT +A+ +A + F V + T Y E
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 108
Query: 138 ---RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV------GTGS 188
+ RARA V +DA ++ S G
Sbjct: 109 LVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLD 168
Query: 189 GDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGY 248
+ + ++A A E + + K + + K LI
Sbjct: 169 DKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDD 228
Query: 249 SGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSK 296
+ + + E + A + ++ G ++ + + D S+
Sbjct: 229 EAAKLIN--PEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSR 274
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 49.0 bits (115), Expect = 2e-07
Identities = 25/258 (9%), Positives = 59/258 (22%), Gaps = 49/258 (18%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115
++ + L L + G G GKT LAK +
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNM---IYGSIGRVGIGKTTLAKFTVKRVSE 72
Query: 116 TFFNVLPSSLTSKHYG--------------------------ESEKLVRALFETARARAP 149
+ + + +++AL +
Sbjct: 73 AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132
Query: 150 AV-IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA 208
+ + +DE + S R + + + +LV + + E
Sbjct: 133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREK 192
Query: 209 LKRRFEKRISP-----------IQIIGLCLGEIRKDPNVD------VATLSKQLIGYSGS 251
+ + + I+ +D + ++ + + G GS
Sbjct: 193 IPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS 252
Query: 252 --DIRDLCQEIILIAARE 267
+ +A
Sbjct: 253 ARRAIVALKMACEMAEAM 270
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 48.6 bits (114), Expect = 3e-07
Identities = 28/223 (12%), Positives = 55/223 (24%), Gaps = 13/223 (5%)
Query: 55 WDDIAGLDNVKQIFKETL-----LLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV 109
+ G K L K +R +L+GPPG GKT A V
Sbjct: 13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72
Query: 110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS----- 164
+ + ++ + V+ + + +
Sbjct: 73 --AQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 130
Query: 165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIG 224
+ R + S ++ + + + R I
Sbjct: 131 EVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIK 190
Query: 225 LCLGEIRKDPNVDVA-TLSKQLIGYSGSDIRDLCQEIILIAAR 266
L I + + +LI + DIR + + I+
Sbjct: 191 SRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT 233
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 46.1 bits (108), Expect = 1e-06
Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 17/173 (9%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
+LL G PG+GK+ +A+A+A+ G + S Y + ++ L ++ + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHF--HSDDLWGYIKHGRIDPWLPQSHQQNRMIM 64
Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD---EA 208
+V A R + +DGV LA H L
Sbjct: 65 QIAADV-----------AGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAE 113
Query: 209 LKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
R R L + ++ D+ ++ SG D Q I
Sbjct: 114 AIERCLDRGGDSLSDPLVVADLHSQFA-DLGAFEHHVLPVSGKDTDQALQSAI 165
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 44.8 bits (104), Expect = 6e-06
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115
+ ++ + + K P+ +P +LL+GP GTGK A+
Sbjct: 11 NALSHNEELTNFLKSLSDQPRDLP-----------HLLLYGPNGTGKKTRCMALLESIFG 59
Query: 116 TFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRC 175
L + + KL L + + D + +E
Sbjct: 60 PGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 117
Query: 176 ELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
++ G K V++ A + D
Sbjct: 118 QVDFQDSKDGLAHRYKCVIINEANSLTKD 146
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 43.2 bits (100), Expect = 2e-05
Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFET----AR 145
L+ G TGK+ + K ++ + + ++Y + + L + +
Sbjct: 30 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVK 89
Query: 146 ARAPAVIFIDEVDAFCSGSREHEATRRVRC 175
+ + + E + +
Sbjct: 90 RLPSLLKALKNIQGIVIMGNEIKFNWNRKD 119
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 40.8 bits (94), Expect = 7e-05
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 87 RPW--RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESE 134
RP+ + + + G +GK++L +A+ +T + G E
Sbjct: 3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE 52
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 40.1 bits (93), Expect = 2e-04
Identities = 37/229 (16%), Positives = 60/229 (26%), Gaps = 53/229 (23%)
Query: 55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
+ D+ G ++V L L ++ L G G GKT +A+ +A
Sbjct: 11 FADVVGQEHVLTALANGLSLGRIHH-----------AYLFSGTRGVGKTSIARLLAKGLN 59
Query: 115 STFFNVLPSSLTSKHYGESEKL------------------VRALFETARARAPA----VI 152
+ E E+ R L + + V
Sbjct: 60 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 119
Query: 153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR 212
IDEV S LL ++ + V L AT P L + R
Sbjct: 120 LIDEVHMLSRHSFN---------ALLKTLE-----EPPEHVKFLLATTDPQKLPVTILSR 165
Query: 213 FEKRISP-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDL 256
+ L + + L + L + +RD
Sbjct: 166 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL-QLLARAAEGSLRDA 213
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 39.9 bits (92), Expect = 3e-04
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 91 GILLFGPPGTGKTLLAKAVAS 111
G+L+FG GTGK+ +A+A+
Sbjct: 30 GVLVFGDRGTGKSTAVRALAA 50
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 37.7 bits (87), Expect = 9e-04
Identities = 18/181 (9%), Positives = 51/181 (28%), Gaps = 33/181 (18%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFF---NVLPSSLTSKHYGESEKLVRALFETARARA 148
IL+ G + ++ + +VL ++ G + +R + +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD--IRTIKDFLNYSP 75
Query: 149 ----PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
+ + + T++ L ++ + +++ T
Sbjct: 76 ELYTRKYVIVHDC---------ERMTQQAANAFLKALEEPP-----EYAVIVLNTRRWHY 121
Query: 205 LDEALKRRF----------EKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
L +K R + + +I L + + A + +L S +
Sbjct: 122 LLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSGLM 181
Query: 255 D 255
+
Sbjct: 182 E 182
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 36.8 bits (84), Expect = 0.001
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
ILL G PG GKT L K +AS+ G + NV
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 36.9 bits (84), Expect = 0.002
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
R I+L G GK+ + + + S +
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 36.9 bits (85), Expect = 0.002
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 34/152 (22%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVA----------SQHGSTFFNVLPSSLTS--KHYGESE 134
R LL G G GKT +A+ +A T +++ SL + K+ G+ E
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96
Query: 135 KLVRALFETARARAPAVIFIDEVDAFCSGSR----EHEATRRVRCELLSHMDGVGTGSGD 190
K +AL + +++FIDE+ + +A ++ L
Sbjct: 97 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL------------S 144
Query: 191 KGVLVLAATNHPWDL------DEALKRRFEKR 216
G + + + + D AL RRF+K
Sbjct: 145 SGKIRVIGSTTYQEFSNIFEKDRALARRFQKI 176
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 36.2 bits (82), Expect = 0.002
Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 32/192 (16%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
++ GP G GK+ K +A+Q ++ + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIE----------------GDIINHMVVGGYRPP 48
Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP--------- 202
DE+ A + + + +D + + +
Sbjct: 49 WESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIIL 108
Query: 203 WDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIIL 262
W E L RR R Q+ CL + + + + + S +L +
Sbjct: 109 WTNREELLRRDALRKKDEQMGERCLELVEEFESKGI--DERYFYNTSHLQPTNLNDIV-- 164
Query: 263 IAAREVIQNAGF 274
+ + N F
Sbjct: 165 ---KNLKTNPRF 173
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 36.3 bits (82), Expect = 0.002
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
R I L GP G GK+ + + +A Q F++
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 35.6 bits (81), Expect = 0.003
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119
++ G PG GK+ + G N
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVN 44
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 35.7 bits (81), Expect = 0.004
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
++L GPPG GK A + + +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 35.6 bits (81), Expect = 0.007
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV------LPSSLTSKHYGESEKLVRAL 140
ILL GP G+GKTL+A+ +A + +L++A
Sbjct: 66 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 125
Query: 141 FETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182
+ ++FIDE+D S TR V E +
Sbjct: 126 DWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQAL 167
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 34.6 bits (78), Expect = 0.007
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFF 118
IL+ G PGTGKT +A+ +A++
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 34.5 bits (78), Expect = 0.009
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
+LL GPPG GK A +A + G +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 34.5 bits (78), Expect = 0.009
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
+++ G P +GK + + +++ +
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISA 34
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 34.2 bits (77), Expect = 0.009
Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 13/144 (9%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV-----------LPSSLTSKHYGESEKLVRAL 140
+L G PG+GK+ + + +A G + + + E ++ +
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDV 63
Query: 141 FETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN 200
A A V+ + G R A V +S +GV G+ +LA +
Sbjct: 64 VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPD 123
Query: 201 HPWDLDEALKRR--FEKRISPIQI 222
+ +R +R++ +++
Sbjct: 124 RAEKYRALMAKRAPLYRRVATMRV 147
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 33.9 bits (76), Expect = 0.010
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFF 118
IL G PG+GK+ A+ +++ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYN 31
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 34.5 bits (78), Expect = 0.010
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
I+L G P GK A+ + ++G +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 34.6 bits (78), Expect = 0.010
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
+ + G PG+GK + G +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 34.5 bits (78), Expect = 0.010
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
+L GPPG GK A +A
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 34.9 bits (80), Expect = 0.010
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 34/154 (22%)
Query: 92 ILLFGPPGTGKTLLAKAV--ASQHGSTFFNVLPSSLTSKHYGESE--KLVRALFETARAR 147
+L+ G G GK ++A+ + S F L + + E+E + F A +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 148 AP--------AVIFIDEVDAFCSGSREHEATRRVRCELLSHM-DGVGTGSGDKG-----V 193
+F+DE+ E + + +LL + G G + V
Sbjct: 86 KEGFFELADGGTLFLDEI---------GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNV 136
Query: 194 LVLAATNHPWDLDEALKR-RFEK----RISPIQI 222
+LAATN ++ E +K +F + R+ I+I
Sbjct: 137 RILAATNR--NIKELVKEGKFREDLYYRLGVIEI 168
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.2 bits (77), Expect = 0.011
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQ 112
R + L GPPG GKT L +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEV 24
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 34.2 bits (77), Expect = 0.011
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
+L G G+GK+ +A VA Q + F +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDG 37
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 34.1 bits (77), Expect = 0.011
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP 149
+ ++L G G G+ + + ++H F P T++ + E+ + + + +
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRF--AYPIPHTTRPPKKDEENGKNYYFVSHDQMM 61
Query: 150 AVIFIDEVDAFCSGSREHEATRRVRCELLSHMD 182
I +E + S T+ +
Sbjct: 62 QDISNNEYLEYGSHEDAMYGTKLETIRKIHEQG 94
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 34.3 bits (77), Expect = 0.011
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 92 ILLFGPPGTGKTLLAKAVASQH 113
+L+ PG G L A++
Sbjct: 27 LLIQALPGMGDDALIYALSRYL 48
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 34.2 bits (77), Expect = 0.012
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFF 118
I + G G G T + + +A G F
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFV 31
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 34.1 bits (77), Expect = 0.012
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
++L G PG GK A+ + + +G +
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 34.2 bits (77), Expect = 0.013
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
I + G PG+GK + + ++G T +
Sbjct: 11 IFVVGGPGSGKGTQCEKIVQKYGYTHLST 39
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 34.0 bits (77), Expect = 0.015
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
+ G PG+GK ++ + +
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 33.8 bits (76), Expect = 0.016
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGE 132
R I++ GP GTGK+ L K + +++ +F + S+ + GE
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 33.9 bits (76), Expect = 0.017
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 28/125 (22%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ--- 112
D++ D+ + K+TL L P + L +GPPGTGKT A+ +
Sbjct: 12 DEVTAQDHAVTVLKKTLKSANL-PHM-----------LFYGPPGTGKTSTILALTKELYG 59
Query: 113 ---HGSTFFNVLPSSLTSKHYGESE----------KLVRALFETARARAPAVIFIDEVDA 159
S + S + K + E +I +DE D+
Sbjct: 60 PDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADS 119
Query: 160 FCSGS 164
+ +
Sbjct: 120 MTADA 124
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 33.8 bits (76), Expect = 0.017
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
I + G PG GK + + + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 33.8 bits (76), Expect = 0.019
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 88 PWRGILLFGPPGTGKTLLAKAVASQHG 114
P + + G PG GK + ++G
Sbjct: 1 PLV-VFVLGGPGAGKGTQCARIVEKYG 26
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 33.4 bits (75), Expect = 0.020
Identities = 13/127 (10%), Positives = 28/127 (22%), Gaps = 2/127 (1%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
+++ G PG G T ++ N S S + +++ +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE 63
Query: 152 IFIDEVDAFCSGSREHEATRRVRCE--LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL 209
E V + VL + ++
Sbjct: 64 TQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTG 123
Query: 210 KRRFEKR 216
+R
Sbjct: 124 DEILMRR 130
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 33.0 bits (74), Expect = 0.021
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTFF 118
+ I+ G G+GK+ LA+A+A F
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 32.9 bits (74), Expect = 0.026
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
I+L G PG GK A + ++G+ +
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHIST 31
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 32.7 bits (74), Expect = 0.029
Identities = 13/55 (23%), Positives = 18/55 (32%)
Query: 76 KLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY 130
K L K + L G G GKT L + + G P+ + Y
Sbjct: 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEY 74
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 33.5 bits (76), Expect = 0.030
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 27/142 (19%)
Query: 92 ILLFGPPGTGKTLLAKAVA----------SQHGSTFFNVLPSSLTSKHYGESE---KLVR 138
+L G PG GKT + + +A G ++ SL + E +L
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 139 ALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198
+ E +++ ++FIDE+ + A +L +G L L
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVD--AGNMLKPALA-------RGELRLIG 156
Query: 199 TNHPWDL-----DEALKRRFEK 215
+ D AL+RRF+
Sbjct: 157 ATTLDEYREIEKDPALERRFQP 178
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 33.1 bits (74), Expect = 0.034
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119
I + GP G GK L KA+A +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLLD 33
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 32.6 bits (73), Expect = 0.036
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQHGSTF 117
R ++L GP G GK+ L K + +H S F
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIF 28
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.3 bits (72), Expect = 0.044
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119
+ L G G GKT ++ A+
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIP 49
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 32.4 bits (72), Expect = 0.047
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 87 RPWRG--ILLFGPPGTGKTLLAKAVASQHGSTFFN 119
R +G I L G +GK +A+A+
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGR 36
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 32.5 bits (73), Expect = 0.061
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 75 PKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124
PK + L + + R + L G GTGKT+ V G + P+
Sbjct: 14 PKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNK 63
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 32.0 bits (71), Expect = 0.067
Identities = 8/90 (8%), Positives = 21/90 (23%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
+ + G +GKT LA ++ +V + +++ E
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHM 181
+ + +
Sbjct: 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDT 114
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 32.4 bits (73), Expect = 0.076
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 75 PKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS 124
P+ + +L G+ R + L G GTGKT V +Q + +
Sbjct: 17 PQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNK 66
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.1 bits (71), Expect = 0.079
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 80 QLFKGILRPWRGILLFGPPGTGKTLLAKAVA 110
+L +G + +FG TGKT + +A
Sbjct: 14 KLLQGGIETGSITEMFGEFRTGKTQICHTLA 44
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.8 bits (71), Expect = 0.089
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 81 LFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112
+ G IL G GTGKTLL
Sbjct: 18 MCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 31.1 bits (69), Expect = 0.12
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
++L GP GK+ + + + + + F+V
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.1 bits (69), Expect = 0.13
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121
++ G PG GK+ + V + N
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 31.3 bits (70), Expect = 0.13
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY 130
+P L GP G GKT + ++ G S +H
Sbjct: 50 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 93
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 31.2 bits (69), Expect = 0.14
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 81 LFKGILRPWRGILLFGPPGTGKTLLAKAVA 110
L G + LFG TGK+ L +A
Sbjct: 26 LLGGGVETGSITELFGEFRTGKSQLCHTLA 55
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 31.2 bits (69), Expect = 0.14
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 80 QLFKGILRPWRGILLFGPPGTGKTLLAKAVA 110
+ G L G G+GKT +
Sbjct: 25 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 55
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 30.7 bits (68), Expect = 0.17
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 92 ILLFGPPGTGKTLLAKAVA 110
I++ G P GKT ++K +
Sbjct: 5 IVMVGLPARGKTYISKKLT 23
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.19
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 80 QLFKGILRPWRGILLFGPPGTGKTLLA 106
+ G L R L+ G GTGKTL +
Sbjct: 17 DISHGGLPIGRSTLVSGTSGTGKTLFS 43
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 30.8 bits (68), Expect = 0.21
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 81 LFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113
L G + +FG G+GKT LA +A
Sbjct: 28 LLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 60
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.3 bits (67), Expect = 0.23
Identities = 13/104 (12%), Positives = 19/104 (18%), Gaps = 1/104 (0%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLV-RALFETARARAPA 150
+ GTGKT L K + + T + A A
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 151 VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL 194
V E E + +
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHE 108
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.5 bits (67), Expect = 0.23
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 81 LFKGILRPWRGILLFGPPGTGKTLLA 106
L G + FG TGKT L+
Sbjct: 29 LLGGGIESMAITEAFGEFRTGKTQLS 54
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 30.4 bits (67), Expect = 0.25
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 96 GPPGTGKTLLAKAVASQHGSTFFN 119
GP +GK+ +AK +A G T+ +
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.2 bits (68), Expect = 0.29
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPW-------RGILLFGPPGTGKTLLAKA 108
I + + I + L ++ F G L+ + ++ GP TGK+ +
Sbjct: 14 SKIDEGGDWRPIVQ-FLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 72
Query: 109 VAS 111
Sbjct: 73 FIH 75
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 30.1 bits (66), Expect = 0.33
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 76 KLMPQLFKGILRPWRGILLFGPPGTGKT--LLAKAV--ASQHGSTFFNVLPSSLTSKHYG 131
+L P + + L+ G+GKT + K G ++ + T+K
Sbjct: 1 RLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR 60
Query: 132 ESEKLVRALFETARARAPAVIFIDEVDAFC 161
E ++ V AR + +
Sbjct: 61 EMKERVGQTLGRKEARGLMISTFHTLGLDI 90
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 30.1 bits (67), Expect = 0.34
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 21/89 (23%)
Query: 87 RPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTSKH-------------- 129
RP L GP G GKT LAK +A+ + + KH
Sbjct: 51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 110
Query: 130 YGESEKLVRALFETARARAPAVIFIDEVD 158
Y E +L A+ R R +VI DE++
Sbjct: 111 YEEGGQLTEAV----RRRPYSVILFDEIE 135
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 30.1 bits (66), Expect = 0.35
Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 35/210 (16%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ--- 112
D++ G + V ++ + KL +L +GPPGTGKT A+A +
Sbjct: 14 DEVYGQNEVITTVRKFVDEGKLPH------------LLFYGPPGTGKTSTIVALAREIYG 61
Query: 113 --HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEAT 170
+ + + S ++ A ++ +I +DE DA + A
Sbjct: 62 KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--AQNAL 119
Query: 171 RRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEI 230
RRV K N+ L AL + + I
Sbjct: 120 RRVIER------------YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRI 167
Query: 231 RKDPNVDVATLS----KQLIGYSGSDIRDL 256
+ LS K LI S D+R +
Sbjct: 168 ANVLVHEKLKLSPNAEKALIELSNGDMRRV 197
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.9 bits (67), Expect = 0.36
Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 47/168 (27%)
Query: 79 PQLFKGILRPW--------RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY 130
PQ + W I LFGP TGKT +A+A+A + T+++
Sbjct: 86 PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP----FYGCVNWTNEN- 140
Query: 131 GESEKLVRALFETARARAPAVIFIDEVDAFC-SGSREHEATR----RVRCELLSHMDGVG 185
F VI+ +E RV + S
Sbjct: 141 ----------FPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDP 190
Query: 186 TGSGDKGVLVLAATNHP---------WDLDEALKRR-----FEKRISP 219
T V+V + TN ++ + L+ R +R+
Sbjct: 191 T-----PVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDH 233
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.8 bits (66), Expect = 0.38
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY 130
++ P G GK+ L +A+ V S T +
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR 43
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.0 bits (66), Expect = 0.42
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 86 LRPWRGILLFGPPGTGKTLLAKAVA-SQHGSTFFNVLPSSLTSKHYGESEKLVRALF 141
R I++ G GK+ + A + V + L +E L+
Sbjct: 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHN 88
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.2 bits (64), Expect = 0.43
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 92 ILLFGPPGTGKTLLAKAVA 110
I++ G PG GKT L K +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.46
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 85 ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125
+ + ++ L P G+GK+ A + G + PS
Sbjct: 4 VPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVA 44
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 29.7 bits (67), Expect = 0.50
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 39/116 (33%)
Query: 89 WRG--ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
+G I LFG G GKT+L + + A+A
Sbjct: 66 AKGGKIGLFGGAGVGKTVLIMELINN------------------------------VAKA 95
Query: 147 RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP 202
+F A G R E + E++ + K LV N P
Sbjct: 96 HGGYSVF-----AGV-GERTREG-NDLYHEMIESGVINLKDATSKVALVYGQMNEP 144
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 29.4 bits (65), Expect = 0.51
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 76 KLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH 113
+++ +L + + L G G+GK+++A S+
Sbjct: 31 RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKS 68
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 29.6 bits (65), Expect = 0.56
Identities = 36/257 (14%), Positives = 66/257 (25%), Gaps = 22/257 (8%)
Query: 61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ--HGSTFF 118
++ ++ L ++P + G + L P G GK++LA +A+Q G
Sbjct: 6 INILEAFAAAPPPLDYVLPNMVAGTV-----GALVSPGGAGKSMLALQLAAQIAGGPDLL 60
Query: 119 NVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC-------SGSREHEATR 171
V Y +E A+ A + + GS +
Sbjct: 61 EVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAP 120
Query: 172 RVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIR 231
L +G D + + R E + + L
Sbjct: 121 EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180
Query: 232 KDPNVDVATLSKQLIGYSGSD-IRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGA 290
K + Q GS + D + ++ D +
Sbjct: 181 KGA--AMMGAGDQQQASRGSSVLVDNIRWQSYLS-----SMTSAEAEEWGVDDDQRRFFV 233
Query: 291 KGDDSKCQVAPLGSDRI 307
+ SK +DR
Sbjct: 234 RFGVSKANYGAPFADRW 250
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.5 bits (65), Expect = 0.60
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQ 112
R +L+ G GTGK++L + +A
Sbjct: 51 RHLLVNGATGTGKSVLLRELAYT 73
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 0.62
Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 19/156 (12%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLV----RALFETARAR 147
L G G+GKT A +A + L + ++ E+L +
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 72
Query: 148 APAVIFIDEVDAFCSGSREHEA-----------TRRVRCELLSHMDGVGTGSGDKGVLVL 196
E L+ + V D+ +LVL
Sbjct: 73 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV--LGPDEVLLVL 130
Query: 197 AATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRK 232
A L A R F++++ ++ L +
Sbjct: 131 DAMTGQEALSVA--RAFDEKVGVTGLVLTKLDGDAR 164
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.8 bits (64), Expect = 0.70
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQH 113
G+LL G G GK+ A + +++
Sbjct: 16 VGVLLTGRSGIGKSECALDLINKN 39
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.1 bits (61), Expect = 0.89
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 85 ILRPWRGILLFGPPGTGKTLLA 106
+L+ +L PG GKT
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRF 24
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 28.3 bits (63), Expect = 0.95
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 90 RGILLFGPPGTGKTLLAKAVASQH 113
G+L+ G G GK+ A + +
Sbjct: 15 LGVLITGDSGVGKSETALELVQRG 38
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 28.2 bits (62), Expect = 1.3
Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 28/169 (16%)
Query: 57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST 116
+ +G++ + LL +L+ L + + IL+ G G GK S+
Sbjct: 3 EWSGINTFAPATQTKLL--ELLGNLKQEDVNSLT-ILVMGKGGVGK------------SS 47
Query: 117 FFNVL---PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRV 173
N + S E + V A + ID G A +
Sbjct: 48 TVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT---LNIIDTPGLIEGGYINDMALNII 104
Query: 174 RCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQI 222
+ LL V + V + D + L + I
Sbjct: 105 KSFLLDKTIDV-------LLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 146
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 27.7 bits (61), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 92 ILLFGPPGTGKTLLAKAVA 110
L+ PP GKT+L + +A
Sbjct: 46 GLIVAPPKAGKTMLLQNIA 64
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.2 bits (60), Expect = 2.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 90 RGILLFGPPGTGKTLLA 106
G+L+ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.6 bits (60), Expect = 2.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 85 ILRPWRGILLFGPPGTGKTL 104
I R R ++ PG GKT
Sbjct: 5 IFRKKRLTIMDLHPGAGKTK 24
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.0 bits (59), Expect = 2.5
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 69 KETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK 128
KE ++P +P + I+L G GTGK A +A + F V
Sbjct: 2 KEPKVIPDKIPYV----------IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY 51
Query: 129 HYGESE 134
E
Sbjct: 52 RPAALE 57
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.9 bits (59), Expect = 2.9
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESE 134
IL+ G G GKT +A Q +V+ ++ + E
Sbjct: 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE 54
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 27.3 bits (60), Expect = 3.3
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 93 LLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH--YGESEKLVRALFETARARAPA 150
+ G G + ++H + S+T +G + + L + P
Sbjct: 86 YVHGSQGC--VAYFRTYFNRHFKEPIACVSDSMTEDAAVFGGNNNMNLGLQNASALYKPE 143
Query: 151 VIFI----------DEVDAFCSGSRE 166
+I + D++ AF + +++
Sbjct: 144 IIAVSTTCMAEVIGDDLQAFIANAKK 169
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 26.7 bits (58), Expect = 3.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 92 ILLFGPPGTGKTLLAKAVASQ 112
I L G +GK+ LA + Q
Sbjct: 27 IWLTGLSASGKSTLAVELEHQ 47
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 27.2 bits (59), Expect = 3.5
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 73 LLPKLMPQLFKGILRPWRGILLFGPPGTGKT-LLAKAVA---SQHGSTFFNVLPSSLTSK 128
LL L + + + +L+ G+GKT +L +A ++ +N+L + T+K
Sbjct: 8 LLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67
Query: 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFC 161
E + V++L A ++I + C
Sbjct: 68 AAREMRERVQSLLGGAAED----VWISTFHSMC 96
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 73 LLPKLMPQLFKGILRPWRGILLFGPPGTGKT 103
LL L + + + +L+ G+GKT
Sbjct: 8 LLAHLNKEQQEAVRTTEGPLLIMAGAGSGKT 38
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.6 bits (58), Expect = 3.7
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEK 135
I++ G GTGKT +A +V+ ++ + E+
Sbjct: 14 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQ 57
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.8 bits (58), Expect = 3.7
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFN 119
I + G +GK+ + + G +
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVD 32
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS
N-domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 77
Score = 25.1 bits (55), Expect = 3.7
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 223 IGLCLGEIRKDPNVDVATLSKQLI 246
+G+ + + +K NV+++ L K++I
Sbjct: 46 VGVEVNKFKKSTNVEISKLVKKMI 69
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 26.8 bits (58), Expect = 3.8
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 13/107 (12%)
Query: 68 FKETLLLPKLMPQLFKGILRPW-------------RGILLFGPPGTGKTLLAKAVASQHG 114
F E LL + + K + P P G GKT A++
Sbjct: 24 FPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA 83
Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC 161
TS ++ + +R E A +I
Sbjct: 84 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPK 130
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 26.7 bits (59), Expect = 4.0
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGST 116
L+ G TGKT +A
Sbjct: 71 ELIIGDRQTGKTSIAIDTIINQKRF 95
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 26.5 bits (57), Expect = 4.0
Identities = 25/204 (12%), Positives = 58/204 (28%), Gaps = 22/204 (10%)
Query: 56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115
DI G ++ + P + ++ G PG GKT +A +
Sbjct: 15 SDIVGNKETIDRLQQIAKDGNM-PHM-----------IISGMPGIGKTTSVHCLAHELLG 62
Query: 116 TFFNVLPSSLTSKHYGESEKLVRALFETA---RARAPAVIFIDEVDAFCSGSREHEATRR 172
+ L + + + + A P I +D S + + R
Sbjct: 63 RSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALR 122
Query: 173 VRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRK 232
EL S+ ++ + ++ + + + L +++
Sbjct: 123 RTMELYSNSTRFAFACNQSNKII--EPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY 180
Query: 233 DPNVDVATLSKQLIGYSGSDIRDL 256
+ + +I + D+R
Sbjct: 181 TNDG-----LEAIIFTAEGDMRQA 199
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 26.5 bits (58), Expect = 4.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 93 LLFGPPGTGKTLLA 106
+ FG GTGKT L+
Sbjct: 18 VFFGLSGTGKTTLS 31
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 26.5 bits (58), Expect = 5.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 93 LLFGPPGTGKTLLA 106
+ FG GTGKT L+
Sbjct: 18 VFFGLSGTGKTTLS 31
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.4 bits (58), Expect = 5.1
Identities = 7/56 (12%), Positives = 13/56 (23%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARAR 147
I + G G G + + + + H + L A
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAG 62
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.1 bits (56), Expect = 5.4
Identities = 23/125 (18%), Positives = 34/125 (27%), Gaps = 3/125 (2%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
ILL G GKT L K +AS+ S ++ S + V + + R
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWR 78
Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR 211
+ + D + R VL+ A DL A
Sbjct: 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK---QDLLTAAPA 135
Query: 212 RFEKR 216
Sbjct: 136 SEIAE 140
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 26.3 bits (57), Expect = 5.6
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121
I GP G+GK+ + + + +
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEK 59
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 26.5 bits (58), Expect = 5.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 93 LLFGPPGTGKTLLA 106
+ FG GTGKT L+
Sbjct: 18 VFFGLSGTGKTTLS 31
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 26.2 bits (57), Expect = 7.6
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 93 LLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH--YGESEKLVRALFETARARAPA 150
+ G G ++ ++H + + S+T +G + + L P
Sbjct: 87 YVHGSQGC--VAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPD 144
Query: 151 VIFI----------DEVDAFCSGSR-EHEATRRVRCELLSHMDGVGT 186
+I + D+++AF + S+ E VG+
Sbjct: 145 MIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGS 191
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 25.3 bits (54), Expect = 9.6
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 92 ILLFGPPGTGKTLLAKAV 109
++ G G+GKT L
Sbjct: 3 VVFVGTAGSGKTTLTGEF 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.405
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,291,223
Number of extensions: 60917
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 127
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)