BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7810
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 569 bits (1466), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/464 (60%), Positives = 341/464 (73%), Gaps = 42/464 (9%)
Query: 16 KWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEI 72
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF +I
Sbjct: 379 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 438
Query: 73 HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFY 132
HVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++ FY
Sbjct: 439 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 498
Query: 133 QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILP 192
+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNARVILP
Sbjct: 499 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 557
Query: 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLP 252
GMTACI+CTL+L+PPQV +P+C TIAS PRLPEH
Sbjct: 558 GMTACIECTLELYPPQVNFPMC-----------------------TIASMPRLPEH---- 590
Query: 253 PRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGVTYRLV 310
CIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYRL
Sbjct: 591 ------CIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 644
Query: 311 QGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKS 370
QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAERK
Sbjct: 645 QGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKE 704
Query: 371 NCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVR 430
NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY+ +V
Sbjct: 705 NCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 761
Query: 431 SIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 762 SIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 805
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/464 (60%), Positives = 340/464 (73%), Gaps = 42/464 (9%)
Query: 16 KWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEI 72
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF +I
Sbjct: 8 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 67
Query: 73 HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFY 132
HVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++ FY
Sbjct: 68 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 127
Query: 133 QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILP 192
+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNARVILP
Sbjct: 128 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 186
Query: 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLP 252
GMTACI+CTL+L+PPQV +P+ TIAS P
Sbjct: 187 GMTACIECTLELYPPQVNFPMATIASMP-------------------------------- 214
Query: 253 PRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGVTYRLV 310
RLPEHCIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYRL
Sbjct: 215 -RLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 273
Query: 311 QGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKS 370
QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAERK
Sbjct: 274 QGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKE 333
Query: 371 NCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVR 430
NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY+ +V
Sbjct: 334 NCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 390
Query: 431 SIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 391 SIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 434
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 567 bits (1462), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/464 (60%), Positives = 340/464 (73%), Gaps = 42/464 (9%)
Query: 16 KWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEI 72
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF +I
Sbjct: 5 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 64
Query: 73 HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFY 132
HVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++ FY
Sbjct: 65 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 124
Query: 133 QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILP 192
+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNARVILP
Sbjct: 125 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 183
Query: 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLP 252
GMTACI+CTL+L+PPQV +P+ TIAS P
Sbjct: 184 GMTACIECTLELYPPQVNFPMATIASMP-------------------------------- 211
Query: 253 PRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGVTYRLV 310
RLPEHCIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYRL
Sbjct: 212 -RLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 270
Query: 311 QGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKS 370
QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAERK
Sbjct: 271 QGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKE 330
Query: 371 NCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVR 430
NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY+ +V
Sbjct: 331 NCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 387
Query: 431 SIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 388 SIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 431
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/469 (60%), Positives = 343/469 (73%), Gaps = 42/469 (8%)
Query: 11 GNMARKWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALM 67
G+ +WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL
Sbjct: 32 GDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALS 91
Query: 68 GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDY 127
GF +IHVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD+
Sbjct: 92 GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF 151
Query: 128 DSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNA 187
+ FY+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNA
Sbjct: 152 NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNA 210
Query: 188 RVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPE 247
RVILPGMTACI+CTL+L+PPQV +P+C TIAS PRLPE
Sbjct: 211 RVILPGMTACIECTLELYPPQVNFPMC-----------------------TIASMPRLPE 247
Query: 248 HCDLPPRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGV 305
H CIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GV
Sbjct: 248 H----------CIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 297
Query: 306 TYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYE 365
TYRL QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+E
Sbjct: 298 TYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFE 357
Query: 366 AERKSNCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLY 425
AERK NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY
Sbjct: 358 AERKENCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY 414
Query: 426 MSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
+ +V SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 415 LQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 463
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 566 bits (1459), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/469 (60%), Positives = 343/469 (73%), Gaps = 42/469 (8%)
Query: 11 GNMARKWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALM 67
G+ +WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL
Sbjct: 13 GDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALS 72
Query: 68 GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDY 127
GF +IHVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD+
Sbjct: 73 GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF 132
Query: 128 DSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNA 187
+ FY+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNA
Sbjct: 133 NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNA 191
Query: 188 RVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPE 247
RVILPGMTACI+CTL+L+PPQV +P+C TIAS PRLPE
Sbjct: 192 RVILPGMTACIECTLELYPPQVNFPMC-----------------------TIASMPRLPE 228
Query: 248 HCDLPPRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGV 305
H CIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GV
Sbjct: 229 H----------CIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV 278
Query: 306 TYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYE 365
TYRL QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+E
Sbjct: 279 TYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFE 338
Query: 366 AERKSNCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLY 425
AERK NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY
Sbjct: 339 AERKENCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY 395
Query: 426 MSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
+ +V SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 396 LQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 444
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 566 bits (1459), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/464 (60%), Positives = 340/464 (73%), Gaps = 42/464 (9%)
Query: 16 KWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEI 72
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF +I
Sbjct: 8 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 67
Query: 73 HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFY 132
HVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++ FY
Sbjct: 68 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 127
Query: 133 QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILP 192
+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNA+VILP
Sbjct: 128 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAQVILP 186
Query: 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLP 252
GMTACI+CTL+L+PPQV +P+ TIAS P
Sbjct: 187 GMTACIECTLELYPPQVNFPMATIASMP-------------------------------- 214
Query: 253 PRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGVTYRLV 310
RLPEHCIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYRL
Sbjct: 215 -RLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 273
Query: 311 QGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKS 370
QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAERK
Sbjct: 274 QGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKE 333
Query: 371 NCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVR 430
NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY+ +V
Sbjct: 334 NCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 390
Query: 431 SIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 391 SIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 434
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 566 bits (1458), Expect = e-161, Method: Compositional matrix adjust.
Identities = 282/464 (60%), Positives = 341/464 (73%), Gaps = 42/464 (9%)
Query: 16 KWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEI 72
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF +I
Sbjct: 8 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 67
Query: 73 HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFY 132
HVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++ FY
Sbjct: 68 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 127
Query: 133 QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILP 192
+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNARVILP
Sbjct: 128 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 186
Query: 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLP 252
GMTACI+CTL+L+PPQV +P+C TIAS PRLPEH
Sbjct: 187 GMTACIECTLELYPPQVNFPMC-----------------------TIASMPRLPEH---- 219
Query: 253 PRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGVTYRLV 310
CIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYRL
Sbjct: 220 ------CIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 273
Query: 311 QGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKS 370
QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAERK
Sbjct: 274 QGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKE 333
Query: 371 NCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVR 430
NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY+ +V
Sbjct: 334 NCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 390
Query: 431 SIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 391 SIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 434
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/464 (60%), Positives = 339/464 (73%), Gaps = 42/464 (9%)
Query: 16 KWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEI 72
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF +I
Sbjct: 8 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 67
Query: 73 HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFY 132
HVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++ FY
Sbjct: 68 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 127
Query: 133 QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILP 192
+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNA VILP
Sbjct: 128 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAAVILP 186
Query: 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLP 252
GMTACI+CTL+L+PPQV +P+ TIAS P
Sbjct: 187 GMTACIECTLELYPPQVNFPMATIASMP-------------------------------- 214
Query: 253 PRLPEHCIEYVKVIQWSKENPFD--CPIDGDDPNHINWIYEKASERASQFNIVGVTYRLV 310
RLPEHCIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYRL
Sbjct: 215 -RLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 273
Query: 311 QGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKS 370
QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAERK
Sbjct: 274 QGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKE 333
Query: 371 NCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVR 430
NC AC + P+ + S KL E+++ L S QMKSP +T +G+NRTLY+ +V
Sbjct: 334 NCPAC--SQLPQNIQF-SPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 390
Query: 431 SIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 391 SIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 434
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 116/190 (61%), Gaps = 17/190 (8%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VL++GAGG+GCELLK++ L GF+ I +ID+DTID+SNLNRQFLF++K +G SKA+VA +
Sbjct: 39 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKE 98
Query: 107 FINSRIPGVKVIPHFCKIQ--DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEED 164
+ P ++ + I DY+ +F++QF +++ LD+ AR +N M L
Sbjct: 99 SVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL-------- 150
Query: 165 GQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPE 224
+ +P+++ GT G+ G I G+T C +C P Q T+P CTI +TP P
Sbjct: 151 -----AADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGCTIRNTPSEPI 203
Query: 225 HCIEYVKVTY 234
HCI + K +
Sbjct: 204 HCIVWAKYLF 213
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 20/225 (8%)
Query: 254 RLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGV 313
RL IE ++V K + + D DDP+ ++++ A+ R F++ + ++ +
Sbjct: 340 RLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSM 399
Query: 314 IKNIIPAVASTNAVIAATCATEVFKLATG----CATSLNNYMVFNDVAGIYTYTYEAERK 369
NIIPA+A+TNAVIA E K+ +G C T N N +
Sbjct: 400 AGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQP-NPRKKLLVPCALDPPN 458
Query: 370 SNCLACGPANQPKYLDIESLDMKLSELIELLCQ----HPSYQMKSPGLTTMQDGRNRTLY 425
NC C A++P+ ++ + + ++ L Q + M +P + ++DG+ L
Sbjct: 459 PNCYVC--ASKPEV----TVRLNVHKVTVLTLQDKIVKEKFAMVAPDV-QIEDGKGTIL- 510
Query: 426 MSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITL 470
+ S E T N + L E G+R+ + D TL I +
Sbjct: 511 ---ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINI 552
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 116/190 (61%), Gaps = 17/190 (8%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VL++GAGG+GCELLK++ L GF+ I +ID+DTID+SNLNRQFLF++K +G SKA+VA +
Sbjct: 21 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKE 80
Query: 107 FINSRIPGVKVIPHFCKIQ--DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEED 164
+ P ++ + I DY+ +F++QF +++ LD+ AR +N M L
Sbjct: 81 SVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL-------- 132
Query: 165 GQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPE 224
+ +P+++ GT G+ G I G+T C +C P Q T+P CTI +TP P
Sbjct: 133 -----AADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGCTIRNTPSEPI 185
Query: 225 HCIEYVKVTY 234
HCI + K +
Sbjct: 186 HCIVWAKYLF 195
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 20/225 (8%)
Query: 254 RLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGV 313
RL IE ++V K + + D DDP+ ++++ A+ R F++ + ++ +
Sbjct: 322 RLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSM 381
Query: 314 IKNIIPAVASTNAVIAATCATEVFKLATG----CATSLNNYMVFNDVAGIYTYTYEAERK 369
NIIPA+A+TNAVIA E K+ +G C T N N +
Sbjct: 382 AGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQP-NPRKKLLVPCALDPPN 440
Query: 370 SNCLACGPANQPKYLDIESLDMKLSELIELLCQ----HPSYQMKSPGLTTMQDGRNRTLY 425
NC C A++P+ ++ + + ++ L Q + M +P + ++DG+ L
Sbjct: 441 PNCYVC--ASKPEV----TVRLNVHKVTVLTLQDKIVKEKFAMVAPDV-QIEDGKGTIL- 492
Query: 426 MSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITL 470
+ S E T N + L E G+R+ + D TL I +
Sbjct: 493 ---ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINI 534
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 17/190 (8%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VL++GAGG+GCELLK++ L GF+ I +ID+DTID+SNLNRQFLF++K +G SKA+VA +
Sbjct: 19 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKE 78
Query: 107 FINSRIPGVKVIPHFCKIQ--DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEED 164
+ P ++ + I DY+ +F++QF +++ LD+ AR +N M L
Sbjct: 79 SVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL-------- 130
Query: 165 GQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPE 224
+ +P+++ GT G+ G I G+T C +C P Q T+P TI +TP P
Sbjct: 131 -----AADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGATIRNTPSEPI 183
Query: 225 HCIEYVKVTY 234
HCI + K +
Sbjct: 184 HCIVWAKYLF 193
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 20/225 (8%)
Query: 254 RLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGV 313
RL IE ++V K + + D DDP+ ++++ A+ R F++ + ++ +
Sbjct: 320 RLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSM 379
Query: 314 IKNIIPAVASTNAVIAATCATEVFKLATG----CATSLNNYMVFNDVAGIYTYTYEAERK 369
NIIPA+A+TNAVIA E K+ +G C T N N +
Sbjct: 380 AGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQP-NPRKKLLVPCALDPPN 438
Query: 370 SNCLACGPANQPKYLDIESLDMKLSELIELLCQ----HPSYQMKSPGLTTMQDGRNRTLY 425
NC C A++P+ ++ + + ++ L Q + M +P + ++DG+ L
Sbjct: 439 PNCYVC--ASKPEV----TVRLNVHKVTVLTLQDKIVKEKFAMVAPDV-QIEDGKGTIL- 490
Query: 426 MSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITL 470
+ S E T N + L E G+R+ + D TL I +
Sbjct: 491 ---ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINI 532
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 35/206 (16%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNE-----IHVIDMDTIDLSNLNRQFLFRQKDIGSS 99
+ KV ++G+G +GCE+LK+ AL+G I V D D+I+ SNLNRQFLFR KD+G +
Sbjct: 425 NSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKN 484
Query: 100 KAEVAAKF-----------INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVAR 148
K+EVAA+ IN++I KV P +I ++ F++ + LD++ AR
Sbjct: 485 KSEVAAEAVCAMNPDLKGKINAKID--KVGPETEEI--FNDSFWESLDFVTNALDNVDAR 540
Query: 149 RWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQ 208
+++ + + P+++ GT G KGN +VI+P +T + D PP+
Sbjct: 541 TYVDRRCVFYRK-------------PLLESGTLGTKGNTQVIIPRLTESYSSSRD--PPE 585
Query: 209 VTYPLCTIASTPRLPEHCIEYVKVTY 234
+ PLCT+ S P +H I + K +
Sbjct: 586 KSIPLCTLRSFPNKIDHTIAWAKSLF 611
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 37 EALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDI 96
EA+ +QTS VLI+G GLG E+ K++ L G + V D + + L++L+ QF +KDI
Sbjct: 20 EAMLKMQTS-NVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDI 78
Query: 97 GSSKAEVA-AKF--INSRIP 113
G + +V AK +N+ +P
Sbjct: 79 GQKRGDVTRAKLAELNAYVP 98
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 270 KENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIA 329
K P D D D +HI +I ++ RA + I + + + IIPA+A+T +++
Sbjct: 806 KLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVT 865
Query: 330 ATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLAC--GPANQPKY---- 383
E++KL T + Y G S +A G N KY
Sbjct: 866 GLVNLELYKLIDN-KTDIEQYK-----NGFVNLALPFFGFSEPIASPKGEYNNKKYDKIW 919
Query: 384 --LDIESLDMKLSELIE 398
DI+ D+KLS+LIE
Sbjct: 920 DRFDIKG-DIKLSDLIE 935
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 108/201 (53%), Gaps = 31/201 (15%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGF-----NEIHVIDMDTIDLSNLNRQFLFRQKDIGSS 99
S ++GAG +GCE+LK+ A+MG I V DMD+I+ SNLNRQFLFR +D+G
Sbjct: 416 SLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKL 475
Query: 100 KAEVAAKFINSRIPGV---------KVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRW 150
K+E A+ ++ P + +V P I + +F+++ ++ LD++ AR +
Sbjct: 476 KSECASTAVSIMNPSLTGKITSYQERVGPESEGI--FGDEFFEKLSLVTNALDNVEARMY 533
Query: 151 INGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVT 210
++ + + P+++ GT G KGN +V++P +T + D PP+ +
Sbjct: 534 VDRRCVFFEK-------------PLLESGTLGTKGNTQVVVPHLTESYGSSQD--PPEKS 578
Query: 211 YPLCTIASTPRLPEHCIEYVK 231
+P+CT+ + P EH I + +
Sbjct: 579 FPICTLKNFPNRIEHTIAWAR 599
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEV 103
+ VLIIG GLG E+ K++ L G + + D + +L+ Q+ + DIG +A+V
Sbjct: 25 SQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAKV 84
Query: 104 AAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWIN 152
S++ + + + +++ + F +V S+ + IN
Sbjct: 85 TV----SKLAELNQYVPVSVVDELSTEYLKNFKCVVVTETSLTKQLEIN 129
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 273 PFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATC 332
P + D D +HI++I ++ RA ++I + V I+PA+ ++ AV++
Sbjct: 796 PAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLV 855
Query: 333 ATEVFKLATGCATSLNNYM--VFNDVAGIYTYT 363
E+ KL G + Y FN G++T++
Sbjct: 856 CLELVKLVDG-KKKIEEYKNGFFNLAIGLFTFS 887
>pdb|2LQ7|A Chain A, E2 Binding Surface On Uba3 Beta-Grasp Domain Undergoes A
Conformational Transition
Length = 97
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 54/83 (65%)
Query: 392 KLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRD 451
KL E+++ L S QMKSP +T +G+NRTLY+ +V SIEE TR NL ++L ELGL D
Sbjct: 15 KLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD 74
Query: 452 EGIVNVADSTTPNTLEITLRVTA 474
+ VAD TTP T+ L T+
Sbjct: 75 GQELAVADVTTPQTVLFKLHFTS 97
>pdb|1Y8X|B Chain B, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
pdb|3FN1|A Chain A, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 98
Score = 75.1 bits (183), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 52/83 (62%)
Query: 392 KLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRD 451
KL E+++ L S Q KSP +T +G+NRTLY +V SIEE TR NL ++L ELGL D
Sbjct: 16 KLQEVLDYLTNSASLQXKSPAITATLEGKNRTLYXQSVTSIEERTRPNLSKTLKELGLVD 75
Query: 452 EGIVNVADSTTPNTLEITLRVTA 474
+ VAD TTP T+ L T+
Sbjct: 76 GQELAVADVTTPQTVLFKLHFTS 98
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ KV+I+G GG+G + +A G EI +ID D I+ +NL RQ LF + D+G +K EV
Sbjct: 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVI 177
Query: 105 AKFINSRIPGVKVIPHFCKIQDYDSDFYQ--QFHIIVCGLDS-IVARRWINGMLLSLLQ- 160
+ + R + V I DY +D ++ + I V D W+N + Q
Sbjct: 178 KRELLKRNSEISVSEIALNINDY-TDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQP 236
Query: 161 YEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDC 200
Y G V+ + + +PG T C +C
Sbjct: 237 YINAGYVNDIAVF-------------GPLYVPGKTGCYEC 263
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ KV+I+G GG+G + +A G EI +ID D I+ +NL RQ LF + D+G +K EV
Sbjct: 115 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVI 174
Query: 105 AKFINSRIPGVKVIPHFCKIQDYDSDFYQ--QFHIIVCGLDS-IVARRWINGMLLSLLQ- 160
+ + R + V I DY +D ++ + I V D W+N + Q
Sbjct: 175 KRELLKRNSEISVSEIALNINDY-TDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQP 233
Query: 161 YEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDC 200
Y G V+ + + +PG T C +C
Sbjct: 234 YINAGYVNDIAVF-------------GPLYVPGKTGCYEC 260
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VLI+G GGLGC + +A G + ++D DT+ LSNL RQ L +G K E A
Sbjct: 33 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARD 92
Query: 107 FINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWIN 152
+ P + + P + D + + + +++ D++ R +N
Sbjct: 93 ALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLN 139
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VLIIG GGLG +A G + + D D + LSNL RQ LF +DI K++V+ +
Sbjct: 30 QVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQ 89
Query: 107 FINSRIPGVKVIPHFCKIQ-DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDG 165
+ P +++ ++ + D + +++ D++ R+ IN ++L
Sbjct: 90 RLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVAL------- 142
Query: 166 QVDQSTIIPMVDGGTEGFKGNARVILP 192
P++ GF G V+ P
Sbjct: 143 ------NTPLITASAVGFGGQLMVLTP 163
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VLIIG GGLG +A G + + D D + LSNL RQ LF +DI K++V+ +
Sbjct: 32 QVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQ 91
Query: 107 FINSRIPGVKVIPHFCKIQ-DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDG 165
+ P +++ ++ + D + +++ D++ R+ IN ++L
Sbjct: 92 RLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVAL------- 144
Query: 166 QVDQSTIIPMVDGGTEGFKGNARVILP 192
P++ GF G V+ P
Sbjct: 145 ------NTPLITASAVGFGGQLMVLTP 165
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+A
Sbjct: 326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDAGKPKAELA 385
Query: 105 AKFINSRIP--------------GVKVIPHFCKIQDYD--SDFYQQFHIIVCGLDSIVAR 148
A + P G K++ + +D+D ++ II +DS
Sbjct: 386 AASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS-RES 444
Query: 149 RWINGML 155
RW+ +L
Sbjct: 445 RWLPSLL 451
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+A
Sbjct: 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELA 93
Query: 105 AKFINSRIP--------------GVKVIPHFCKIQDYD--SDFYQQFHIIVCGLDSIVAR 148
A + P G K++ + +D+D ++ II +DS
Sbjct: 94 AASLKRIFPLXDATGVKLSIPXIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS-RES 152
Query: 149 RWINGML 155
RW+ +L
Sbjct: 153 RWLPSLL 159
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+AA
Sbjct: 40 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 99
Query: 107 FINSRIP--------------GVKVIPHFCKIQDYD--SDFYQQFHIIVCGLDSIVARRW 150
+ P G K++ + +D+D ++ II +DS RW
Sbjct: 100 SLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS-RESRW 158
Query: 151 INGML 155
+ +L
Sbjct: 159 LPSLL 163
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+AA
Sbjct: 36 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 95
Query: 107 FINSRIP--------------GVKVIPHFCKIQDYD--SDFYQQFHIIVCGLDSIVARRW 150
+ P G K++ + +D+D ++ II +DS RW
Sbjct: 96 SLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS-RESRW 154
Query: 151 INGML 155
+ +L
Sbjct: 155 LPSLL 159
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+AA
Sbjct: 328 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 387
Query: 107 FINSRIP--------------GVKVIPHFCKIQDYD--SDFYQQFHIIVCGLDSIVARRW 150
+ P G K++ + +D+D ++ II +DS RW
Sbjct: 388 SLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS-RESRW 446
Query: 151 INGML 155
+ +L
Sbjct: 447 LPSLL 451
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+AA
Sbjct: 329 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 388
Query: 107 FINSRIP--------------GVKVIPHFCKIQDYD--SDFYQQFHIIVCGLDSIVARRW 150
+ P G K++ + +D+D ++ II +DS RW
Sbjct: 389 SLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS-RESRW 447
Query: 151 INGML 155
+ +L
Sbjct: 448 LPSLL 452
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+AA
Sbjct: 329 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA 388
Query: 107 FINSRIP--------------GVKVIPHFCKIQDYD--SDFYQQFHIIVCGLDSIVARRW 150
+ P G K++ + +D+D ++ II +DS RW
Sbjct: 389 SLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS-RESRW 447
Query: 151 INGML 155
+ +L
Sbjct: 448 LPSLL 452
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 37 EALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDI 96
EA L+ S +VL++G GLG E+ K++ L G + ++D + + + QFL R +
Sbjct: 29 EAQKRLRAS-RVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSV 87
Query: 97 GSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHII---VCGLDSIV 146
G ++AE + + + P V V I+ F+ QF + C D IV
Sbjct: 88 GRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIV 140
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
S V +I A G E+LK++ L G +ID + + + F ++ IG ++AE A
Sbjct: 32 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAA 91
Query: 105 AKF---INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVC 140
+F +NS + G V + D D F+ +F ++V
Sbjct: 92 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 130
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
S V +I A G E+LK++ L G +ID + + + F ++ IG ++AE A
Sbjct: 33 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAA 92
Query: 105 AKF---INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVC 140
+F +NS + G V + D D F+ +F ++V
Sbjct: 93 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 131
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
S V +I A G E+LK++ L G +ID + + + F ++ IG ++AE A
Sbjct: 30 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAA 89
Query: 105 AKF---INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVC 140
+F +NS + G V + D D F+ +F ++V
Sbjct: 90 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 128
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
S V +I A G E+LK++ L G +ID + + + F ++ IG ++AE A
Sbjct: 32 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAA 91
Query: 105 AKF---INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVC 140
+F +NS + G V + D D F+ +F ++V
Sbjct: 92 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 130
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
S V +I A G E+LK++ L G +ID + + + F ++ IG ++AE A
Sbjct: 30 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAA 89
Query: 105 AKF---INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVC 140
+F +NS + G V + D D F+ +F ++V
Sbjct: 90 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 128
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 68 GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFI------------NSRIPGV 115
G ++ + D D ++L+N+NR F F+ G SK + A + N I V
Sbjct: 59 GIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTV 117
Query: 116 KVIPHFC-KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIP 174
+ HF +I + + + +++ +D+ AR IN L Q + V ++ +
Sbjct: 118 ENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAV-- 175
Query: 175 MVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVT 210
G+ ++I+PG +AC C PP V
Sbjct: 176 ---------SGHIQLIIPGESACFACA----PPLVV 198
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 208 QVTYPLCTIASTPRLPEHCIEYVKVTY 234
Q T+P CTI +TP P HCI + K +
Sbjct: 2 QRTFPGCTIRNTPSEPIHCIVWAKYLF 28
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 17 WNHLRKVLERPGPFCTSPSSEALSFLQT 44
W L K+ + G F SPSS A +F+QT
Sbjct: 190 WEKLLKLQSQDGSFLFSPSSTAFAFMQT 217
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 40 SFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVID 76
S L + +++ GAG +G L+K + +G N++HV+D
Sbjct: 28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVD 64
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDL 82
+ ++ +++IIGAG +G L ++ G+N I V+D +++
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNM 41
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase
Mutant Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDL 82
+++IIGAG +G L ++ G+N I V+D +++
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNM 38
>pdb|4FEM|A Chain A, Structure Of Suse With Alpha-Cyclodextrin
Length = 358
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 379 NQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRE 438
N P Y D+K ++ +EL C P Y P TT T+ S + EAT E
Sbjct: 11 NTPAYAANNVYDLKNAQTVELTCSQPDYGF--PAATTY------TVQASFEQDFIEATDE 62
Query: 439 NLKRSLVELGLRDEGIVNVADSTTPNT-LEITLRVTAKMAE 478
+ V +NV S N L++ V + AE
Sbjct: 63 SKANYTVLESTSPTAKINVDASELNNALLDLWTAVNGEQAE 103
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 646 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 705
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 706 KTNVAVCTSMGADFYP 721
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 176 VDGGTEGFKGNARVILPGMTACIDCTLDLFPP---QVTYPL--CT 215
++ ++G KG +I P + C DC +LF P + YP CT
Sbjct: 88 IEKSSKGGKGGDSIIPPDIAICDDCLRELFDPTNKRYXYPFIVCT 132
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 669 KTNVAVCTSMGADFYP 684
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+ II+ S+ R + L+ L D V+QST P + +E K A +I
Sbjct: 607 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 666
Query: 191 LPGMTACIDCTLDLFP 206
+ C D +P
Sbjct: 667 KTNVAVCTSMGADFYP 682
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,359,241
Number of Sequences: 62578
Number of extensions: 596479
Number of successful extensions: 1606
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 98
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)