Query psy7810
Match_columns 478
No_of_seqs 321 out of 2271
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 19:23:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2015|consensus 100.0 2.2E-95 5E-100 696.5 32.4 412 14-472 7-421 (422)
2 KOG2013|consensus 100.0 1.1E-84 2.4E-89 650.2 23.0 403 36-467 3-518 (603)
3 cd01488 Uba3_RUB Ubiquitin act 100.0 5.3E-75 1.2E-79 572.2 28.0 291 47-376 1-291 (291)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 3E-70 6.6E-75 562.8 27.7 353 47-429 1-426 (435)
5 TIGR01408 Ube1 ubiquitin-activ 100.0 1.2E-70 2.6E-75 617.2 25.9 395 13-447 398-968 (1008)
6 cd01489 Uba2_SUMO Ubiquitin ac 100.0 8E-68 1.7E-72 526.7 25.5 299 47-375 1-312 (312)
7 KOG2012|consensus 100.0 8.2E-66 1.8E-70 540.8 17.6 398 12-447 408-974 (1013)
8 cd01484 E1-2_like Ubiquitin ac 100.0 2.3E-64 4.9E-69 484.6 24.0 231 47-337 1-234 (234)
9 TIGR02355 moeB molybdopterin s 100.0 4.7E-47 1E-51 367.5 23.2 237 14-375 2-240 (240)
10 PRK07411 hypothetical protein; 100.0 2.6E-46 5.6E-51 386.5 24.2 247 8-377 10-257 (390)
11 PRK05690 molybdopterin biosynt 100.0 4.6E-46 9.9E-51 362.1 24.4 239 9-372 5-245 (245)
12 PRK12475 thiamine/molybdopteri 100.0 6.1E-46 1.3E-50 376.4 23.7 239 13-376 1-244 (338)
13 PRK05600 thiamine biosynthesis 100.0 3.3E-45 7.1E-50 375.0 25.7 268 8-402 13-284 (370)
14 PRK05597 molybdopterin biosynt 100.0 2.3E-45 4.9E-50 375.3 24.4 241 11-376 3-246 (355)
15 PRK07688 thiamine/molybdopteri 100.0 1.2E-44 2.6E-49 367.1 26.3 239 13-376 1-244 (339)
16 PRK07878 molybdopterin biosynt 100.0 1.3E-44 2.8E-49 374.6 25.0 244 8-374 14-262 (392)
17 PRK08223 hypothetical protein; 100.0 3.5E-44 7.6E-49 351.3 26.0 169 11-204 4-175 (287)
18 cd01491 Ube1_repeat1 Ubiquitin 100.0 8.1E-45 1.8E-49 357.6 17.9 277 16-360 1-283 (286)
19 PRK08328 hypothetical protein; 100.0 2E-43 4.4E-48 340.7 24.3 170 10-203 3-174 (231)
20 cd00757 ThiF_MoeB_HesA_family 100.0 3.6E-43 7.8E-48 338.9 23.0 164 16-203 1-167 (228)
21 PRK08762 molybdopterin biosynt 100.0 5.5E-43 1.2E-47 361.3 25.8 244 9-376 108-357 (376)
22 TIGR02356 adenyl_thiF thiazole 100.0 9E-43 1.9E-47 329.9 18.3 164 16-203 1-168 (202)
23 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.3E-41 2.8E-46 320.3 21.5 151 15-189 2-152 (197)
24 KOG2014|consensus 100.0 1.4E-41 2.9E-46 325.0 18.5 313 8-359 5-322 (331)
25 TIGR01408 Ube1 ubiquitin-activ 100.0 4.1E-40 8.9E-45 370.6 27.0 319 13-361 3-386 (1008)
26 COG0476 ThiF Dinucleotide-util 100.0 6.8E-40 1.5E-44 321.3 20.1 246 9-376 3-253 (254)
27 KOG2017|consensus 100.0 9.3E-41 2E-45 323.7 13.6 246 9-377 39-286 (427)
28 cd01485 E1-1_like Ubiquitin ac 100.0 1.7E-39 3.6E-44 306.4 20.1 150 16-189 1-155 (198)
29 cd01493 APPBP1_RUB Ubiquitin a 100.0 5.2E-37 1.1E-41 318.0 27.5 163 15-202 1-166 (425)
30 TIGR03603 cyclo_dehy_ocin bact 100.0 2.1E-36 4.6E-41 303.8 21.0 265 10-400 48-316 (318)
31 KOG2012|consensus 100.0 3E-36 6.4E-41 318.1 19.6 332 10-377 13-408 (1013)
32 PRK14852 hypothetical protein; 100.0 2E-34 4.2E-39 317.8 20.4 166 14-204 312-480 (989)
33 PRK14851 hypothetical protein; 100.0 3.8E-34 8.2E-39 311.6 21.2 170 10-204 19-191 (679)
34 PRK08644 thiamine biosynthesis 100.0 1.7E-33 3.8E-38 268.0 20.5 144 35-193 19-164 (212)
35 TIGR01381 E1_like_apg7 E1-like 100.0 4.7E-32 1E-36 287.2 22.6 136 41-190 334-490 (664)
36 PF00899 ThiF: ThiF family; I 100.0 2.1E-31 4.7E-36 236.3 15.4 133 44-189 1-134 (135)
37 cd01487 E1_ThiF_like E1_ThiF_l 100.0 2.6E-31 5.7E-36 245.6 16.6 142 47-201 1-145 (174)
38 PRK07877 hypothetical protein; 100.0 1.3E-30 2.8E-35 284.6 20.4 165 14-206 87-256 (722)
39 PRK15116 sulfur acceptor prote 100.0 6.7E-31 1.4E-35 256.7 15.4 151 8-182 4-156 (268)
40 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 8.8E-31 1.9E-35 252.3 14.4 162 44-219 10-195 (244)
41 cd01483 E1_enzyme_family Super 100.0 6.9E-30 1.5E-34 228.8 14.3 132 47-191 1-133 (143)
42 TIGR02354 thiF_fam2 thiamine b 100.0 9.1E-29 2E-33 233.4 19.3 120 35-156 12-132 (200)
43 cd01486 Apg7 Apg7 is an E1-lik 100.0 2.9E-29 6.3E-34 245.9 15.8 131 47-191 1-151 (307)
44 cd00755 YgdL_like Family of ac 100.0 3.6E-29 7.9E-34 240.5 14.7 137 34-184 1-139 (231)
45 PTZ00245 ubiquitin activating 100.0 1.6E-27 3.5E-32 225.4 19.2 122 9-147 1-122 (287)
46 KOG2336|consensus 100.0 7.8E-28 1.7E-32 227.7 13.2 222 39-373 77-313 (422)
47 KOG2016|consensus 99.9 8.1E-27 1.8E-31 232.9 18.3 162 10-195 3-167 (523)
48 COG1179 Dinucleotide-utilizing 99.9 4.6E-27 1E-31 220.3 11.4 148 11-182 7-156 (263)
49 PRK06153 hypothetical protein; 99.9 2.7E-26 5.8E-31 231.7 14.8 164 12-203 150-317 (393)
50 TIGR03693 ocin_ThiF_like putat 99.8 2.4E-20 5.3E-25 196.5 16.5 160 9-202 98-262 (637)
51 KOG2018|consensus 99.8 1.8E-19 4E-24 173.5 12.8 150 14-180 45-198 (430)
52 PF02134 UBACT: Repeat in ubiq 99.7 1.3E-17 2.8E-22 129.2 6.2 67 277-343 1-67 (67)
53 PF08825 E2_bind: E2 binding d 99.7 1.5E-16 3.3E-21 128.1 7.1 84 384-473 1-84 (84)
54 KOG2337|consensus 99.6 7.8E-15 1.7E-19 149.8 10.5 114 42-155 337-471 (669)
55 PF14732 UAE_UbL: Ubiquitin/SU 99.4 3.7E-13 8.1E-18 109.7 7.8 86 384-478 2-87 (87)
56 PF10585 UBA_e1_thiolCys: Ubiq 99.2 1.1E-12 2.3E-17 93.0 -2.4 44 193-238 1-44 (45)
57 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.0 9.6E-10 2.1E-14 89.3 6.3 57 320-376 25-81 (84)
58 TIGR03882 cyclo_dehyd_2 bacter 98.2 2.6E-06 5.6E-11 80.2 5.4 96 36-201 96-193 (193)
59 PF01488 Shikimate_DH: Shikima 98.0 3.4E-05 7.5E-10 68.3 9.0 77 43-145 10-86 (135)
60 PRK12549 shikimate 5-dehydroge 98.0 3.1E-05 6.6E-10 77.4 9.4 77 43-143 125-201 (284)
61 COG1748 LYS9 Saccharopine dehy 97.9 4.9E-05 1.1E-09 78.4 9.7 98 46-181 2-101 (389)
62 COG4015 Predicted dinucleotide 97.8 0.00019 4.1E-09 64.2 9.4 109 44-156 17-131 (217)
63 PRK06718 precorrin-2 dehydroge 97.4 0.00078 1.7E-08 63.9 9.1 85 43-156 8-92 (202)
64 PRK12548 shikimate 5-dehydroge 97.3 0.00095 2.1E-08 66.8 9.3 83 43-143 124-208 (289)
65 PF09358 UBA_e1_C: Ubiquitin-a 97.2 0.00035 7.6E-09 61.0 4.5 60 378-447 31-90 (125)
66 PF13241 NAD_binding_7: Putati 97.2 0.00082 1.8E-08 56.6 6.5 78 43-156 5-82 (103)
67 PRK14027 quinate/shikimate deh 97.2 0.0011 2.4E-08 66.1 8.2 78 44-143 126-203 (283)
68 TIGR01470 cysG_Nterm siroheme 97.2 0.0044 9.6E-08 58.9 11.9 85 43-156 7-91 (205)
69 TIGR01809 Shik-DH-AROM shikima 97.1 0.0017 3.6E-08 64.8 7.8 77 43-143 123-199 (282)
70 PRK06719 precorrin-2 dehydroge 97.1 0.0036 7.9E-08 56.9 9.3 82 43-156 11-92 (157)
71 PRK12749 quinate/shikimate deh 97.0 0.0033 7.1E-08 62.9 9.0 82 43-143 122-205 (288)
72 PF03435 Saccharop_dh: Sacchar 97.0 0.0028 6E-08 66.0 8.6 94 48-178 1-97 (386)
73 COG0373 HemA Glutamyl-tRNA red 96.9 0.0017 3.7E-08 67.6 6.2 75 43-146 176-250 (414)
74 PRK00258 aroE shikimate 5-dehy 96.9 0.0034 7.5E-08 62.4 8.2 75 43-144 121-195 (278)
75 COG1086 Predicted nucleoside-d 96.9 0.0092 2E-07 63.8 11.4 104 16-141 224-332 (588)
76 COG0169 AroE Shikimate 5-dehyd 96.8 0.0056 1.2E-07 61.0 8.6 76 44-144 125-200 (283)
77 PRK13940 glutamyl-tRNA reducta 96.7 0.0032 6.9E-08 66.2 7.1 74 43-144 179-252 (414)
78 PRK05562 precorrin-2 dehydroge 96.7 0.015 3.3E-07 55.8 10.4 85 43-156 23-107 (223)
79 cd01078 NAD_bind_H4MPT_DH NADP 96.4 0.014 3.1E-07 54.6 8.5 79 43-144 26-107 (194)
80 cd01080 NAD_bind_m-THF_DH_Cycl 96.3 0.0073 1.6E-07 55.5 5.9 34 43-77 42-76 (168)
81 cd01065 NAD_bind_Shikimate_DH 96.2 0.018 4E-07 51.5 7.8 36 43-78 17-52 (155)
82 PRK04148 hypothetical protein; 96.1 0.052 1.1E-06 47.9 9.8 84 44-156 16-99 (134)
83 PF03446 NAD_binding_2: NAD bi 96.0 0.03 6.5E-07 51.0 8.3 32 46-78 2-33 (163)
84 cd05291 HicDH_like L-2-hydroxy 96.0 0.024 5.2E-07 57.2 8.2 73 46-144 1-78 (306)
85 KOG4169|consensus 96.0 0.017 3.7E-07 55.1 6.5 78 43-141 3-90 (261)
86 PF00056 Ldh_1_N: lactate/mala 96.0 0.035 7.6E-07 49.5 8.2 74 47-144 2-79 (141)
87 cd05311 NAD_bind_2_malic_enz N 95.9 0.011 2.4E-07 57.1 5.1 37 43-79 23-61 (226)
88 PRK14106 murD UDP-N-acetylmura 95.9 0.035 7.5E-07 58.9 9.3 36 43-79 3-38 (450)
89 PRK12550 shikimate 5-dehydroge 95.9 0.026 5.7E-07 56.0 7.7 34 45-78 122-155 (272)
90 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.032 7E-07 50.5 7.5 91 47-156 1-91 (157)
91 PTZ00082 L-lactate dehydrogena 95.7 0.045 9.7E-07 55.7 8.9 37 43-79 4-40 (321)
92 cd05213 NAD_bind_Glutamyl_tRNA 95.7 0.034 7.4E-07 56.3 8.0 76 43-147 176-251 (311)
93 PLN00203 glutamyl-tRNA reducta 95.7 0.036 7.8E-07 59.9 8.5 76 43-144 264-339 (519)
94 PRK00066 ldh L-lactate dehydro 95.7 0.035 7.6E-07 56.3 7.9 76 44-143 5-82 (315)
95 COG0569 TrkA K+ transport syst 95.7 0.073 1.6E-06 51.3 9.7 85 46-156 1-88 (225)
96 PRK07819 3-hydroxybutyryl-CoA 95.5 0.02 4.3E-07 57.3 5.2 33 46-79 6-38 (286)
97 COG1648 CysG Siroheme synthase 95.4 0.035 7.6E-07 52.9 6.3 85 43-156 10-94 (210)
98 cd05290 LDH_3 A subgroup of L- 95.4 0.056 1.2E-06 54.7 8.1 74 47-144 1-78 (307)
99 PRK00045 hemA glutamyl-tRNA re 95.4 0.036 7.8E-07 58.6 7.0 75 43-146 180-254 (423)
100 PRK07066 3-hydroxybutyryl-CoA 95.4 0.067 1.5E-06 54.4 8.6 33 46-79 8-40 (321)
101 TIGR00507 aroE shikimate 5-deh 95.2 0.062 1.4E-06 53.2 7.8 73 44-144 116-188 (270)
102 PF00070 Pyr_redox: Pyridine n 95.2 0.041 8.9E-07 43.7 5.3 59 47-119 1-59 (80)
103 PRK06197 short chain dehydroge 95.2 0.098 2.1E-06 52.3 9.3 35 43-78 14-49 (306)
104 PRK05854 short chain dehydroge 95.2 0.1 2.2E-06 52.6 9.3 63 43-125 12-75 (313)
105 PRK01438 murD UDP-N-acetylmura 95.1 0.076 1.6E-06 56.9 8.7 43 35-78 6-48 (480)
106 PF01118 Semialdhyde_dh: Semia 95.1 0.18 3.9E-06 43.5 9.4 95 47-179 1-97 (121)
107 KOG0069|consensus 95.1 0.091 2E-06 53.4 8.6 98 42-183 159-257 (336)
108 PRK15469 ghrA bifunctional gly 95.0 0.18 3.9E-06 51.1 10.4 95 42-181 133-228 (312)
109 PRK12480 D-lactate dehydrogena 95.0 0.19 4E-06 51.4 10.7 93 42-181 143-236 (330)
110 PRK14192 bifunctional 5,10-met 94.9 0.078 1.7E-06 52.9 7.5 34 43-77 157-191 (283)
111 PLN02819 lysine-ketoglutarate 94.9 0.14 3E-06 59.5 10.3 87 44-156 568-669 (1042)
112 PF01113 DapB_N: Dihydrodipico 94.9 0.056 1.2E-06 47.0 5.6 98 47-183 2-101 (124)
113 cd05191 NAD_bind_amino_acid_DH 94.7 0.059 1.3E-06 43.6 5.0 36 43-78 21-56 (86)
114 PF11543 UN_NPL4: Nuclear pore 94.7 0.037 8E-07 44.4 3.7 64 381-458 15-78 (80)
115 PRK07062 short chain dehydroge 94.7 0.17 3.6E-06 49.3 9.2 64 43-126 6-70 (265)
116 PRK10637 cysG siroheme synthas 94.7 0.27 5.8E-06 52.6 11.2 86 43-157 10-95 (457)
117 PRK06141 ornithine cyclodeamin 94.6 0.15 3.2E-06 51.7 8.8 75 44-144 124-199 (314)
118 PRK07063 short chain dehydroge 94.6 0.21 4.6E-06 48.4 9.6 64 43-126 5-69 (260)
119 PRK13243 glyoxylate reductase; 94.6 0.1 2.3E-06 53.3 7.5 97 42-183 147-244 (333)
120 PF02719 Polysacc_synt_2: Poly 94.5 0.081 1.8E-06 52.8 6.4 75 48-141 1-84 (293)
121 PLN02602 lactate dehydrogenase 94.5 0.18 3.9E-06 51.9 9.0 74 46-144 38-115 (350)
122 PRK09242 tropinone reductase; 94.5 0.22 4.7E-06 48.2 9.3 80 43-142 7-96 (257)
123 PRK14619 NAD(P)H-dependent gly 94.4 0.15 3.3E-06 51.4 8.4 33 45-78 4-36 (308)
124 PRK05866 short chain dehydroge 94.4 0.23 5E-06 49.6 9.5 63 14-78 6-73 (293)
125 PF02254 TrkA_N: TrkA-N domain 94.4 0.71 1.5E-05 38.9 11.2 82 48-157 1-85 (116)
126 cd05293 LDH_1 A subgroup of L- 94.4 0.23 4.9E-06 50.4 9.4 74 45-143 3-80 (312)
127 TIGR02992 ectoine_eutC ectoine 94.3 0.23 5E-06 50.6 9.4 76 44-144 128-204 (326)
128 PRK08251 short chain dehydroge 94.3 0.32 7E-06 46.6 10.0 62 45-126 2-64 (248)
129 PRK07502 cyclohexadienyl dehyd 94.3 0.34 7.3E-06 48.8 10.4 34 45-78 6-40 (307)
130 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.21 4.5E-06 47.8 8.5 36 43-79 4-40 (251)
131 PRK07340 ornithine cyclodeamin 94.2 0.22 4.7E-06 50.3 8.8 74 44-144 124-198 (304)
132 PRK07831 short chain dehydroge 94.2 0.25 5.5E-06 48.0 9.1 35 42-77 14-50 (262)
133 PLN02928 oxidoreductase family 94.1 0.19 4.1E-06 51.7 8.3 106 42-180 156-263 (347)
134 PRK08618 ornithine cyclodeamin 94.1 0.25 5.5E-06 50.3 9.1 77 44-145 126-203 (325)
135 PRK07231 fabG 3-ketoacyl-(acyl 94.1 0.22 4.7E-06 47.8 8.3 36 43-79 3-39 (251)
136 PRK07523 gluconate 5-dehydroge 94.0 0.31 6.7E-06 47.1 9.2 35 43-78 8-43 (255)
137 PF03807 F420_oxidored: NADP o 93.9 0.079 1.7E-06 43.3 4.2 78 47-154 1-81 (96)
138 PRK06436 glycerate dehydrogena 93.9 0.22 4.8E-06 50.2 8.1 92 42-181 119-211 (303)
139 PRK09599 6-phosphogluconate de 93.8 0.14 3.1E-06 51.4 6.6 32 47-79 2-33 (301)
140 PRK09186 flagellin modificatio 93.7 0.34 7.4E-06 46.6 8.9 33 43-76 2-35 (256)
141 PRK00094 gpsA NAD(P)H-dependen 93.7 0.19 4.2E-06 50.6 7.5 32 47-79 3-34 (325)
142 TIGR03589 PseB UDP-N-acetylglu 93.7 0.33 7.1E-06 49.2 9.1 77 43-142 2-82 (324)
143 PRK07574 formate dehydrogenase 93.7 0.34 7.4E-06 50.5 9.3 98 42-182 189-287 (385)
144 PRK05875 short chain dehydroge 93.6 0.41 8.9E-06 46.8 9.5 35 43-78 5-40 (276)
145 PRK00048 dihydrodipicolinate r 93.6 0.38 8.3E-06 47.3 9.1 92 46-184 2-95 (257)
146 PRK08339 short chain dehydroge 93.5 0.41 9E-06 46.8 9.3 35 43-78 6-41 (263)
147 cd00300 LDH_like L-lactate deh 93.5 0.27 5.9E-06 49.5 8.1 72 48-144 1-76 (300)
148 PRK07634 pyrroline-5-carboxyla 93.5 0.39 8.5E-06 46.4 9.0 81 44-154 3-86 (245)
149 PRK05867 short chain dehydroge 93.5 0.41 8.9E-06 46.2 9.1 34 43-77 7-41 (253)
150 COG1893 ApbA Ketopantoate redu 93.4 0.38 8.2E-06 48.6 8.9 29 46-75 1-29 (307)
151 PRK08291 ectoine utilization p 93.4 0.42 9E-06 48.8 9.2 75 45-144 132-207 (330)
152 COG0240 GpsA Glycerol-3-phosph 93.4 0.43 9.4E-06 48.3 9.1 91 46-155 2-92 (329)
153 PRK06223 malate dehydrogenase; 93.3 0.37 8E-06 48.5 8.8 32 46-77 3-34 (307)
154 COG1052 LdhA Lactate dehydroge 93.3 0.32 6.9E-06 49.5 8.2 95 42-182 143-239 (324)
155 PRK07680 late competence prote 93.3 0.72 1.6E-05 45.6 10.6 78 47-154 2-82 (273)
156 PRK07417 arogenate dehydrogena 93.2 0.31 6.7E-06 48.4 7.7 31 47-78 2-32 (279)
157 PRK06194 hypothetical protein; 93.1 0.49 1.1E-05 46.6 9.1 35 43-78 4-39 (287)
158 PTZ00117 malate dehydrogenase; 93.1 0.14 3.1E-06 52.0 5.3 35 44-78 4-38 (319)
159 TIGR01035 hemA glutamyl-tRNA r 93.1 0.13 2.9E-06 54.2 5.2 36 43-78 178-213 (417)
160 PTZ00142 6-phosphogluconate de 93.0 0.66 1.4E-05 49.7 10.5 34 46-80 2-35 (470)
161 cd01075 NAD_bind_Leu_Phe_Val_D 93.0 0.15 3.3E-06 48.2 5.0 35 43-78 26-60 (200)
162 PRK07576 short chain dehydroge 93.0 0.41 8.8E-06 46.8 8.3 35 43-78 7-42 (264)
163 cd05292 LDH_2 A subgroup of L- 93.0 0.36 7.9E-06 48.8 8.0 32 47-78 2-34 (308)
164 PF02826 2-Hacid_dh_C: D-isome 92.9 0.18 3.8E-06 46.7 5.3 96 42-181 33-129 (178)
165 PF00106 adh_short: short chai 92.9 0.45 9.8E-06 42.5 7.9 78 46-142 1-88 (167)
166 PRK10537 voltage-gated potassi 92.9 0.47 1E-05 49.7 8.9 94 44-141 239-356 (393)
167 PRK11559 garR tartronate semia 92.8 0.62 1.3E-05 46.5 9.5 32 46-78 3-34 (296)
168 PRK11199 tyrA bifunctional cho 92.8 0.4 8.7E-06 49.8 8.2 33 45-78 98-131 (374)
169 TIGR01850 argC N-acetyl-gamma- 92.7 0.38 8.3E-06 49.5 7.9 95 47-179 2-99 (346)
170 PTZ00345 glycerol-3-phosphate 92.7 0.27 5.9E-06 50.9 6.8 91 44-155 10-114 (365)
171 PLN03139 formate dehydrogenase 92.7 0.46 9.9E-06 49.6 8.5 98 42-182 196-294 (386)
172 PLN02780 ketoreductase/ oxidor 92.7 0.72 1.6E-05 46.7 9.8 62 44-125 52-114 (320)
173 PRK14982 acyl-ACP reductase; P 92.7 0.16 3.5E-06 52.0 5.0 37 42-78 152-190 (340)
174 PRK06181 short chain dehydroge 92.7 0.68 1.5E-05 44.8 9.3 32 46-78 2-34 (263)
175 COG1063 Tdh Threonine dehydrog 92.6 0.41 8.9E-06 49.2 7.9 35 45-79 169-203 (350)
176 PRK06928 pyrroline-5-carboxyla 92.6 1.3 2.9E-05 43.9 11.3 80 47-155 3-85 (277)
177 PRK12439 NAD(P)H-dependent gly 92.5 0.58 1.3E-05 48.0 8.8 93 45-156 7-99 (341)
178 PRK08217 fabG 3-ketoacyl-(acyl 92.4 0.47 1E-05 45.4 7.8 35 43-78 3-38 (253)
179 cd01339 LDH-like_MDH L-lactate 92.4 0.53 1.1E-05 47.3 8.4 31 48-78 1-31 (300)
180 COG0300 DltE Short-chain dehyd 92.4 0.87 1.9E-05 44.9 9.6 63 44-127 5-68 (265)
181 PRK13304 L-aspartate dehydroge 92.4 0.63 1.4E-05 45.9 8.7 31 47-77 3-35 (265)
182 PRK06940 short chain dehydroge 92.4 0.69 1.5E-05 45.6 9.0 32 45-78 2-33 (275)
183 PRK14620 NAD(P)H-dependent gly 92.3 0.22 4.7E-06 50.6 5.4 32 47-79 2-33 (326)
184 PRK12384 sorbitol-6-phosphate 92.3 0.84 1.8E-05 44.1 9.3 33 45-78 2-35 (259)
185 PRK06932 glycerate dehydrogena 92.2 0.51 1.1E-05 47.9 7.9 91 42-181 144-235 (314)
186 TIGR02853 spore_dpaA dipicolin 92.2 0.21 4.6E-06 49.9 5.1 34 43-77 149-182 (287)
187 PRK05565 fabG 3-ketoacyl-(acyl 92.1 0.74 1.6E-05 43.8 8.7 34 43-77 3-38 (247)
188 PRK12769 putative oxidoreducta 92.1 0.76 1.6E-05 51.4 9.9 94 44-145 326-423 (654)
189 PLN03209 translocon at the inn 92.1 0.75 1.6E-05 50.3 9.4 80 44-143 79-168 (576)
190 PRK09496 trkA potassium transp 92.1 0.82 1.8E-05 48.4 9.7 84 47-157 2-88 (453)
191 PRK07453 protochlorophyllide o 92.0 0.71 1.5E-05 46.5 8.8 34 44-78 5-39 (322)
192 cd05211 NAD_bind_Glu_Leu_Phe_V 92.0 0.23 5E-06 47.6 4.9 37 43-79 21-57 (217)
193 PRK12921 2-dehydropantoate 2-r 92.0 0.31 6.7E-06 48.7 6.1 30 47-77 2-31 (305)
194 PRK12771 putative glutamate sy 92.0 0.86 1.9E-05 50.0 10.0 35 44-79 136-170 (564)
195 PRK00676 hemA glutamyl-tRNA re 92.0 0.23 4.9E-06 50.7 5.0 36 43-78 172-207 (338)
196 PRK14175 bifunctional 5,10-met 92.0 0.43 9.2E-06 47.7 6.8 34 43-77 156-190 (286)
197 PLN02350 phosphogluconate dehy 91.9 1.3 2.8E-05 47.8 10.9 120 46-183 7-136 (493)
198 PF03949 Malic_M: Malic enzyme 91.9 0.24 5.2E-06 48.5 4.9 96 41-156 21-130 (255)
199 PRK11880 pyrroline-5-carboxyla 91.9 0.28 6E-06 48.2 5.5 78 46-154 3-82 (267)
200 COG1250 FadB 3-hydroxyacyl-CoA 91.9 0.43 9.4E-06 48.1 6.8 93 45-155 3-104 (307)
201 PRK13394 3-hydroxybutyrate deh 91.9 0.93 2E-05 43.7 9.1 35 43-78 5-40 (262)
202 PRK05872 short chain dehydroge 91.9 0.83 1.8E-05 45.5 9.0 35 43-78 7-42 (296)
203 PRK07814 short chain dehydroge 91.9 0.7 1.5E-05 45.0 8.3 35 43-78 8-43 (263)
204 PRK07478 short chain dehydroge 91.8 0.68 1.5E-05 44.7 8.1 35 43-78 4-39 (254)
205 PRK07679 pyrroline-5-carboxyla 91.8 1.2 2.7E-05 44.1 10.1 82 44-155 2-86 (279)
206 PRK15409 bifunctional glyoxyla 91.8 0.64 1.4E-05 47.3 8.1 96 42-182 142-239 (323)
207 TIGR03376 glycerol3P_DH glycer 91.8 0.65 1.4E-05 47.7 8.1 88 47-155 1-103 (342)
208 TIGR00873 gnd 6-phosphoglucona 91.8 0.33 7.2E-06 51.9 6.2 119 47-183 1-127 (467)
209 TIGR00872 gnd_rel 6-phosphoglu 91.7 0.78 1.7E-05 46.0 8.6 32 47-79 2-33 (298)
210 PF02737 3HCDH_N: 3-hydroxyacy 91.7 0.27 5.9E-06 45.6 4.9 96 47-155 1-100 (180)
211 PRK11790 D-3-phosphoglycerate 91.7 0.61 1.3E-05 49.1 8.1 93 42-181 148-241 (409)
212 PRK12490 6-phosphogluconate de 91.7 1.1 2.3E-05 45.1 9.5 32 47-79 2-33 (299)
213 PRK03562 glutathione-regulated 91.7 0.79 1.7E-05 50.9 9.4 85 45-157 400-487 (621)
214 PLN02253 xanthoxin dehydrogena 91.7 0.88 1.9E-05 44.6 8.8 35 43-78 16-51 (280)
215 PRK05708 2-dehydropantoate 2-r 91.6 0.23 5.1E-06 50.0 4.7 34 45-79 2-35 (305)
216 PRK08655 prephenate dehydrogen 91.6 0.51 1.1E-05 50.1 7.4 31 47-78 2-33 (437)
217 PLN02427 UDP-apiose/xylose syn 91.6 1.4 3E-05 45.6 10.6 35 43-77 12-47 (386)
218 PRK06138 short chain dehydroge 91.6 0.95 2.1E-05 43.3 8.8 34 43-77 3-37 (252)
219 PRK06523 short chain dehydroge 91.5 0.68 1.5E-05 44.7 7.7 76 43-121 7-84 (260)
220 PRK07326 short chain dehydroge 91.4 0.88 1.9E-05 43.2 8.3 34 44-78 5-39 (237)
221 TIGR03026 NDP-sugDHase nucleot 91.4 0.92 2E-05 47.7 9.1 86 47-145 2-87 (411)
222 cd00762 NAD_bind_malic_enz NAD 91.4 0.19 4E-06 49.2 3.5 40 41-80 21-70 (254)
223 PRK12429 3-hydroxybutyrate deh 91.4 1.1 2.4E-05 42.9 9.1 35 43-78 2-37 (258)
224 PRK06196 oxidoreductase; Provi 91.3 0.84 1.8E-05 45.9 8.4 35 43-78 24-59 (315)
225 PRK07666 fabG 3-ketoacyl-(acyl 91.2 1.4 2.9E-05 42.1 9.4 35 43-78 5-40 (239)
226 COG0111 SerA Phosphoglycerate 91.2 0.72 1.6E-05 47.0 7.7 96 43-182 140-236 (324)
227 cd05312 NAD_bind_1_malic_enz N 91.2 0.29 6.2E-06 48.6 4.6 95 41-156 21-129 (279)
228 TIGR01202 bchC 2-desacetyl-2-h 91.2 0.96 2.1E-05 45.4 8.6 34 44-77 144-177 (308)
229 PRK06172 short chain dehydroge 91.1 0.79 1.7E-05 44.1 7.7 35 43-78 5-40 (253)
230 PRK07024 short chain dehydroge 91.1 0.9 1.9E-05 44.0 8.1 33 45-78 2-35 (257)
231 PLN02688 pyrroline-5-carboxyla 91.1 1.7 3.7E-05 42.5 10.2 77 47-154 2-81 (266)
232 PRK06125 short chain dehydroge 91.0 1.4 3.1E-05 42.6 9.5 35 43-78 5-40 (259)
233 TIGR01757 Malate-DH_plant mala 91.0 0.63 1.4E-05 48.5 7.2 78 45-144 44-130 (387)
234 PRK13403 ketol-acid reductoiso 91.0 0.32 6.9E-06 49.3 4.8 78 42-153 13-90 (335)
235 PRK08818 prephenate dehydrogen 90.9 1.4 3E-05 45.8 9.6 70 43-155 2-72 (370)
236 PRK15461 NADH-dependent gamma- 90.9 0.58 1.3E-05 46.9 6.7 32 46-78 2-33 (296)
237 PRK12939 short chain dehydroge 90.8 1.6 3.4E-05 41.7 9.5 34 43-77 5-39 (250)
238 PRK12829 short chain dehydroge 90.8 0.76 1.6E-05 44.4 7.3 36 42-78 8-44 (264)
239 PRK06567 putative bifunctional 90.8 0.66 1.4E-05 53.6 7.6 40 44-84 382-421 (1028)
240 PRK12491 pyrroline-5-carboxyla 90.8 2.1 4.5E-05 42.5 10.4 80 45-155 2-84 (272)
241 TIGR01318 gltD_gamma_fam gluta 90.8 1.4 2.9E-05 47.3 9.8 94 44-145 140-237 (467)
242 cd01076 NAD_bind_1_Glu_DH NAD( 90.7 0.72 1.6E-05 44.5 6.9 46 43-97 29-74 (227)
243 PRK13302 putative L-aspartate 90.7 1.3 2.9E-05 43.8 9.0 24 44-67 5-28 (271)
244 PRK06949 short chain dehydroge 90.6 1.3 2.8E-05 42.7 8.7 35 43-78 7-42 (258)
245 PRK03659 glutathione-regulated 90.6 1.2 2.6E-05 49.3 9.4 85 45-157 400-487 (601)
246 PRK07067 sorbitol dehydrogenas 90.6 0.58 1.2E-05 45.2 6.2 37 43-80 4-41 (257)
247 PRK08374 homoserine dehydrogen 90.6 2.4 5.3E-05 43.4 11.0 109 46-180 3-123 (336)
248 TIGR01505 tartro_sem_red 2-hyd 90.5 0.36 7.7E-06 48.2 4.7 31 47-78 1-31 (291)
249 PRK09880 L-idonate 5-dehydroge 90.4 2.4 5.2E-05 43.1 10.9 35 44-78 169-203 (343)
250 PRK07792 fabG 3-ketoacyl-(acyl 90.4 1.6 3.4E-05 43.8 9.4 80 42-142 9-97 (306)
251 PLN02520 bifunctional 3-dehydr 90.4 0.35 7.7E-06 52.6 4.9 34 43-77 377-410 (529)
252 PRK01710 murD UDP-N-acetylmura 90.4 1.4 3E-05 47.0 9.4 38 41-79 10-47 (458)
253 cd00650 LDH_MDH_like NAD-depen 90.4 0.76 1.6E-05 45.2 6.9 32 48-79 1-36 (263)
254 PRK07109 short chain dehydroge 90.4 1.4 3.1E-05 44.8 9.2 35 43-78 6-41 (334)
255 PRK07530 3-hydroxybutyryl-CoA 90.4 0.39 8.5E-06 47.9 4.9 34 44-78 3-36 (292)
256 TIGR01915 npdG NADPH-dependent 90.3 1.9 4.2E-05 41.1 9.5 84 47-154 2-88 (219)
257 PRK05876 short chain dehydroge 90.3 1.4 3.1E-05 43.4 8.8 35 43-78 4-39 (275)
258 PRK06522 2-dehydropantoate 2-r 90.3 0.39 8.5E-06 47.8 4.9 31 47-78 2-32 (304)
259 PRK11908 NAD-dependent epimera 90.3 3.5 7.5E-05 41.9 11.9 32 46-77 2-34 (347)
260 PRK12809 putative oxidoreducta 90.3 1.7 3.8E-05 48.4 10.4 93 44-144 309-405 (639)
261 PF02558 ApbA: Ketopantoate re 90.2 0.5 1.1E-05 42.0 5.0 80 48-154 1-87 (151)
262 PRK12779 putative bifunctional 90.2 1.5 3.4E-05 51.0 10.2 93 44-144 305-402 (944)
263 PRK07074 short chain dehydroge 90.2 1.5 3.2E-05 42.3 8.8 33 45-78 2-35 (257)
264 PLN02240 UDP-glucose 4-epimera 90.2 1.3 2.7E-05 45.0 8.6 34 43-77 3-37 (352)
265 PLN02989 cinnamyl-alcohol dehy 90.1 1.7 3.6E-05 43.7 9.3 33 45-78 5-38 (325)
266 PRK06728 aspartate-semialdehyd 90.1 1.3 2.7E-05 45.6 8.4 106 44-194 4-115 (347)
267 TIGR01316 gltA glutamate synth 90.1 2 4.3E-05 45.7 10.3 34 44-78 132-165 (449)
268 PRK08306 dipicolinate synthase 90.1 0.47 1E-05 47.7 5.2 35 43-78 150-184 (296)
269 PRK06476 pyrroline-5-carboxyla 90.0 1.5 3.3E-05 42.8 8.7 76 47-152 2-79 (258)
270 PTZ00431 pyrroline carboxylate 90.0 1.1 2.4E-05 44.0 7.7 74 44-155 2-78 (260)
271 PRK02705 murD UDP-N-acetylmura 90.0 1.5 3.2E-05 46.6 9.3 33 46-79 1-33 (459)
272 PRK06035 3-hydroxyacyl-CoA deh 90.0 0.46 9.9E-06 47.5 5.0 33 46-79 4-36 (291)
273 PRK06249 2-dehydropantoate 2-r 90.0 0.44 9.6E-06 48.1 5.0 34 45-79 5-38 (313)
274 PRK11064 wecC UDP-N-acetyl-D-m 90.0 2.1 4.6E-05 45.1 10.2 43 45-88 3-45 (415)
275 PF13460 NAD_binding_10: NADH( 89.9 2.6 5.6E-05 38.3 9.7 66 48-143 1-69 (183)
276 PF14560 Ubiquitin_2: Ubiquiti 89.8 0.57 1.2E-05 37.9 4.6 72 380-462 14-85 (87)
277 COG0039 Mdh Malate/lactate deh 89.8 0.41 9E-06 48.3 4.5 33 46-78 1-34 (313)
278 PRK06124 gluconate 5-dehydroge 89.8 1.7 3.7E-05 41.8 8.8 36 43-79 9-45 (256)
279 PRK05653 fabG 3-ketoacyl-(acyl 89.8 1.1 2.5E-05 42.4 7.5 34 44-78 4-38 (246)
280 PRK05476 S-adenosyl-L-homocyst 89.8 0.45 9.9E-06 50.2 5.0 36 43-79 210-245 (425)
281 PLN02383 aspartate semialdehyd 89.7 1.7 3.7E-05 44.7 9.0 107 44-194 6-116 (344)
282 PRK09496 trkA potassium transp 89.7 1.6 3.6E-05 46.1 9.3 87 44-156 230-319 (453)
283 PRK06139 short chain dehydroge 89.7 1.4 3.1E-05 44.8 8.5 35 43-78 5-40 (330)
284 cd08230 glucose_DH Glucose deh 89.7 2 4.3E-05 43.9 9.6 33 44-77 172-204 (355)
285 PRK08278 short chain dehydroge 89.7 2.1 4.6E-05 41.9 9.5 35 43-78 4-39 (273)
286 PRK05671 aspartate-semialdehyd 89.7 1.2 2.7E-05 45.6 7.9 88 46-178 5-96 (336)
287 PRK09072 short chain dehydroge 89.6 1.6 3.6E-05 42.2 8.6 35 43-78 3-38 (263)
288 PRK04308 murD UDP-N-acetylmura 89.6 2 4.3E-05 45.6 9.8 35 44-79 4-38 (445)
289 PLN02852 ferredoxin-NADP+ redu 89.6 1.9 4.1E-05 46.5 9.7 94 44-144 25-124 (491)
290 PRK00436 argC N-acetyl-gamma-g 89.6 1.3 2.9E-05 45.4 8.2 95 46-179 3-99 (343)
291 PRK06057 short chain dehydroge 89.6 0.71 1.5E-05 44.6 5.9 36 43-79 5-41 (255)
292 PRK05335 tRNA (uracil-5-)-meth 89.6 0.45 9.8E-06 50.2 4.8 33 45-78 2-34 (436)
293 PRK09260 3-hydroxybutyryl-CoA 89.5 0.49 1.1E-05 47.1 4.8 34 46-80 2-35 (288)
294 PRK05855 short chain dehydroge 89.4 1.4 3.1E-05 47.7 8.8 35 42-77 312-347 (582)
295 PRK06114 short chain dehydroge 89.4 2.1 4.5E-05 41.3 9.1 35 43-78 6-41 (254)
296 PRK08265 short chain dehydroge 89.4 0.72 1.6E-05 44.9 5.8 36 43-79 4-40 (261)
297 PRK07806 short chain dehydroge 89.3 2.1 4.7E-05 40.8 9.1 34 43-77 4-38 (248)
298 TIGR01296 asd_B aspartate-semi 89.3 1.3 2.8E-05 45.5 7.8 81 47-155 1-82 (339)
299 PRK11730 fadB multifunctional 89.3 0.37 8E-06 54.4 4.1 33 46-79 314-346 (715)
300 TIGR01373 soxB sarcosine oxida 89.3 0.64 1.4E-05 48.5 5.7 39 44-82 29-68 (407)
301 COG1712 Predicted dinucleotide 89.3 1.9 4.1E-05 41.3 8.2 31 47-78 2-35 (255)
302 PRK06398 aldose dehydrogenase; 89.3 1.6 3.5E-05 42.4 8.2 75 43-122 4-80 (258)
303 TIGR01181 dTDP_gluc_dehyt dTDP 89.1 3.7 8.1E-05 40.5 10.9 31 47-77 1-33 (317)
304 PRK06198 short chain dehydroge 89.1 1 2.2E-05 43.5 6.6 36 43-78 4-40 (260)
305 PRK07677 short chain dehydroge 89.1 2 4.2E-05 41.4 8.7 33 45-78 1-34 (252)
306 PRK06130 3-hydroxybutyryl-CoA 89.1 0.58 1.2E-05 47.1 5.1 33 46-79 5-37 (311)
307 TIGR03206 benzo_BadH 2-hydroxy 89.1 1.7 3.6E-05 41.6 8.1 35 43-78 1-36 (250)
308 PRK08945 putative oxoacyl-(acy 89.1 0.78 1.7E-05 44.0 5.8 36 42-78 9-45 (247)
309 PRK12748 3-ketoacyl-(acyl-carr 89.1 0.9 1.9E-05 43.9 6.2 35 43-78 3-40 (256)
310 PRK08277 D-mannonate oxidoredu 89.1 0.89 1.9E-05 44.5 6.3 35 43-78 8-43 (278)
311 KOG0409|consensus 89.0 1.2 2.6E-05 44.4 6.9 31 45-76 35-65 (327)
312 PRK07102 short chain dehydroge 88.9 2.6 5.6E-05 40.2 9.3 32 46-78 2-34 (243)
313 KOG0024|consensus 88.8 2 4.4E-05 43.4 8.4 36 44-79 169-204 (354)
314 PRK08040 putative semialdehyde 88.8 1.7 3.7E-05 44.5 8.2 91 44-178 3-96 (336)
315 PRK08293 3-hydroxybutyryl-CoA 88.8 0.64 1.4E-05 46.3 5.1 32 46-78 4-35 (287)
316 cd05294 LDH-like_MDH_nadp A la 88.7 1.6 3.5E-05 44.1 7.9 33 46-78 1-35 (309)
317 PRK06129 3-hydroxyacyl-CoA deh 88.7 0.61 1.3E-05 47.0 4.9 32 47-79 4-35 (308)
318 PRK00811 spermidine synthase; 88.7 1.1 2.5E-05 44.6 6.7 35 44-79 76-110 (283)
319 PRK11259 solA N-methyltryptoph 88.6 0.59 1.3E-05 48.0 4.8 35 45-80 3-37 (376)
320 PRK13301 putative L-aspartate 88.6 2.2 4.8E-05 42.1 8.5 102 45-156 2-111 (267)
321 PRK10669 putative cation:proto 88.6 2.2 4.9E-05 46.7 9.6 34 45-79 417-450 (558)
322 TIGR00518 alaDH alanine dehydr 88.6 0.64 1.4E-05 48.3 5.1 34 44-78 166-199 (370)
323 COG0771 MurD UDP-N-acetylmuram 88.6 1.1 2.3E-05 47.6 6.8 37 44-81 6-42 (448)
324 cd00401 AdoHcyase S-adenosyl-L 88.6 0.66 1.4E-05 48.8 5.1 36 43-79 200-235 (413)
325 PRK05479 ketol-acid reductoiso 88.6 0.65 1.4E-05 47.4 4.9 79 42-153 14-92 (330)
326 PRK07856 short chain dehydroge 88.5 1.6 3.4E-05 42.1 7.5 77 43-121 4-82 (252)
327 PRK12827 short chain dehydroge 88.5 2.2 4.8E-05 40.6 8.5 34 43-77 4-38 (249)
328 PRK09310 aroDE bifunctional 3- 88.5 0.65 1.4E-05 49.9 5.1 34 43-77 330-363 (477)
329 PLN00106 malate dehydrogenase 88.5 0.76 1.6E-05 46.8 5.4 36 44-79 17-54 (323)
330 PRK15181 Vi polysaccharide bio 88.4 3 6.5E-05 42.5 9.9 36 42-78 12-48 (348)
331 PLN02662 cinnamyl-alcohol dehy 88.4 2.6 5.6E-05 42.1 9.3 34 44-78 3-37 (322)
332 PRK12409 D-amino acid dehydrog 88.4 0.65 1.4E-05 48.5 5.0 33 46-79 2-34 (410)
333 PRK05717 oxidoreductase; Valid 88.4 0.85 1.8E-05 44.0 5.5 36 43-79 8-44 (255)
334 TIGR01771 L-LDH-NAD L-lactate 88.3 1.2 2.6E-05 44.8 6.7 68 50-143 1-73 (299)
335 TIGR00036 dapB dihydrodipicoli 88.3 1.8 4E-05 42.7 7.9 30 47-76 3-34 (266)
336 PRK05808 3-hydroxybutyryl-CoA 88.3 0.66 1.4E-05 46.1 4.8 33 46-79 4-36 (282)
337 PRK07097 gluconate 5-dehydroge 88.3 2.3 5E-05 41.3 8.6 34 43-77 8-42 (265)
338 PRK08264 short chain dehydroge 88.3 0.72 1.6E-05 43.9 4.9 37 43-79 4-41 (238)
339 PRK12744 short chain dehydroge 88.3 3 6.5E-05 40.2 9.4 32 43-74 6-38 (257)
340 PRK12367 short chain dehydroge 88.3 0.91 2E-05 44.1 5.6 39 40-79 9-48 (245)
341 PLN02545 3-hydroxybutyryl-CoA 88.3 0.71 1.5E-05 46.1 5.0 33 46-79 5-37 (295)
342 PF11976 Rad60-SLD: Ubiquitin- 88.3 0.59 1.3E-05 36.1 3.5 59 381-458 12-71 (72)
343 PLN02657 3,8-divinyl protochlo 88.2 3.5 7.7E-05 43.0 10.4 34 44-78 59-93 (390)
344 PRK06046 alanine dehydrogenase 88.1 2.6 5.6E-05 42.9 9.1 75 44-144 128-203 (326)
345 PRK06841 short chain dehydroge 88.1 0.77 1.7E-05 44.2 5.0 35 43-78 13-48 (255)
346 PRK04207 glyceraldehyde-3-phos 88.1 2.1 4.6E-05 43.9 8.4 39 129-181 73-111 (341)
347 PLN02206 UDP-glucuronate decar 88.1 4 8.6E-05 43.4 10.8 33 44-77 118-151 (442)
348 PRK14874 aspartate-semialdehyd 88.1 2.2 4.7E-05 43.7 8.5 80 46-155 2-84 (334)
349 PF10727 Rossmann-like: Rossma 88.0 1.1 2.3E-05 39.3 5.4 80 44-158 9-88 (127)
350 PRK12810 gltD glutamate syntha 88.0 3.4 7.4E-05 44.2 10.3 34 44-78 142-175 (471)
351 cd05296 GH4_P_beta_glucosidase 88.0 1.4 3E-05 46.5 7.2 83 47-148 2-91 (419)
352 PRK08226 short chain dehydroge 88.0 2.3 4.9E-05 41.1 8.3 35 43-78 4-39 (263)
353 PLN02896 cinnamyl-alcohol dehy 88.0 2.9 6.3E-05 42.6 9.4 33 44-77 9-42 (353)
354 PRK13303 L-aspartate dehydroge 87.9 2.6 5.6E-05 41.6 8.7 21 47-67 3-23 (265)
355 PF01266 DAO: FAD dependent ox 87.9 0.84 1.8E-05 45.8 5.4 34 47-81 1-34 (358)
356 TIGR00465 ilvC ketol-acid redu 87.9 0.69 1.5E-05 46.9 4.7 33 43-76 1-33 (314)
357 PRK08324 short chain dehydroge 87.9 2 4.3E-05 48.3 8.8 34 44-78 421-455 (681)
358 TIGR01832 kduD 2-deoxy-D-gluco 87.8 0.78 1.7E-05 43.9 4.9 34 43-77 3-37 (248)
359 PRK09330 cell division protein 87.8 2.8 6.1E-05 43.6 9.1 49 44-92 12-64 (384)
360 TIGR01692 HIBADH 3-hydroxyisob 87.8 2.1 4.6E-05 42.6 8.1 28 50-78 1-28 (288)
361 PRK06935 2-deoxy-D-gluconate 3 87.7 2.5 5.3E-05 40.9 8.3 35 43-78 13-48 (258)
362 TIGR03466 HpnA hopanoid-associ 87.7 1.5 3.2E-05 43.8 6.9 32 47-79 2-34 (328)
363 PRK07774 short chain dehydroge 87.6 1.1 2.4E-05 42.9 5.7 35 43-78 4-39 (250)
364 COG0281 SfcA Malic enzyme [Ene 87.6 0.65 1.4E-05 48.3 4.2 91 41-155 195-291 (432)
365 TIGR01763 MalateDH_bact malate 87.5 0.83 1.8E-05 46.1 5.0 32 46-77 2-33 (305)
366 PRK09291 short chain dehydroge 87.5 3.1 6.8E-05 39.9 8.9 32 45-77 2-34 (257)
367 TIGR01377 soxA_mon sarcosine o 87.4 0.77 1.7E-05 47.2 4.8 33 47-80 2-34 (380)
368 PRK00141 murD UDP-N-acetylmura 87.4 0.76 1.7E-05 49.3 4.9 35 43-78 13-47 (473)
369 PRK08936 glucose-1-dehydrogena 87.3 3.3 7.2E-05 40.0 9.0 33 43-76 5-38 (261)
370 PRK07825 short chain dehydroge 87.3 1.2 2.5E-05 43.5 5.8 36 43-79 3-39 (273)
371 PF12847 Methyltransf_18: Meth 87.3 4.1 8.8E-05 33.7 8.4 77 45-142 2-78 (112)
372 PLN02968 Probable N-acetyl-gam 87.3 1.9 4.1E-05 45.0 7.6 87 44-154 37-124 (381)
373 COG0665 DadA Glycine/D-amino a 87.3 0.97 2.1E-05 46.4 5.5 38 44-82 3-40 (387)
374 TIGR01292 TRX_reduct thioredox 87.2 3.2 7E-05 40.7 9.0 32 47-79 2-33 (300)
375 TIGR02437 FadB fatty oxidation 87.2 0.36 7.8E-06 54.5 2.4 34 45-79 313-346 (714)
376 PRK11154 fadJ multifunctional 87.2 0.63 1.4E-05 52.5 4.2 34 45-79 309-343 (708)
377 COG1062 AdhC Zn-dependent alco 87.2 4.1 8.9E-05 41.5 9.5 91 44-156 185-276 (366)
378 PRK07889 enoyl-(acyl carrier p 87.1 2.6 5.6E-05 40.9 8.1 35 43-78 5-42 (256)
379 PRK14194 bifunctional 5,10-met 87.1 1.4 3E-05 44.4 6.2 35 43-78 157-192 (301)
380 PRK07035 short chain dehydroge 87.1 1.1 2.4E-05 43.1 5.4 35 43-78 6-41 (252)
381 PLN02494 adenosylhomocysteinas 87.1 0.92 2E-05 48.3 5.2 37 43-80 252-288 (477)
382 cd05298 GH4_GlvA_pagL_like Gly 87.1 2.9 6.4E-05 44.4 9.0 106 47-187 2-114 (437)
383 PRK08229 2-dehydropantoate 2-r 87.0 0.77 1.7E-05 46.7 4.5 32 46-78 3-34 (341)
384 PF00670 AdoHcyase_NAD: S-aden 87.0 0.94 2E-05 41.3 4.5 40 40-80 18-57 (162)
385 PRK12814 putative NADPH-depend 87.0 3.6 7.8E-05 46.0 10.1 35 44-79 192-226 (652)
386 cd00704 MDH Malate dehydrogena 87.0 0.84 1.8E-05 46.5 4.7 34 46-79 1-41 (323)
387 PRK06500 short chain dehydroge 86.9 1.3 2.7E-05 42.4 5.7 35 43-78 4-39 (249)
388 TIGR02632 RhaD_aldol-ADH rhamn 86.9 3.1 6.6E-05 46.8 9.5 35 43-78 412-447 (676)
389 PLN02650 dihydroflavonol-4-red 86.8 3.5 7.6E-05 42.0 9.3 34 44-78 4-38 (351)
390 cd01763 Sumo Small ubiquitin-r 86.8 1.4 3.1E-05 35.7 5.1 59 381-458 23-81 (87)
391 PRK08643 acetoin reductase; Va 86.7 1.9 4.1E-05 41.5 6.9 33 45-78 2-35 (256)
392 PRK14188 bifunctional 5,10-met 86.7 1.9 4.2E-05 43.3 7.0 33 43-76 156-189 (296)
393 PRK08267 short chain dehydroge 86.7 2.8 6E-05 40.5 8.0 32 46-78 2-34 (260)
394 PRK09987 dTDP-4-dehydrorhamnos 86.7 2.5 5.4E-05 42.2 7.9 30 47-78 2-32 (299)
395 PRK06113 7-alpha-hydroxysteroi 86.6 3.5 7.6E-05 39.7 8.7 34 43-77 9-43 (255)
396 COG1064 AdhP Zn-dependent alco 86.6 7.7 0.00017 39.7 11.3 32 44-76 166-197 (339)
397 PRK15438 erythronate-4-phospha 86.5 0.95 2.1E-05 47.1 4.8 35 42-77 113-147 (378)
398 TIGR01772 MDH_euk_gproteo mala 86.5 0.95 2.1E-05 45.9 4.7 33 47-79 1-35 (312)
399 PTZ00325 malate dehydrogenase; 86.5 0.93 2E-05 46.1 4.7 34 44-77 7-42 (321)
400 cd08281 liver_ADH_like1 Zinc-d 86.4 3.1 6.8E-05 42.8 8.7 34 44-77 191-224 (371)
401 PRK08862 short chain dehydroge 86.3 3.4 7.3E-05 39.5 8.3 34 43-77 3-37 (227)
402 PTZ00075 Adenosylhomocysteinas 86.3 1.1 2.3E-05 47.9 5.2 38 42-80 251-288 (476)
403 PF01494 FAD_binding_3: FAD bi 86.3 1.1 2.4E-05 44.9 5.1 34 46-80 2-35 (356)
404 TIGR00936 ahcY adenosylhomocys 86.3 1 2.2E-05 47.2 5.0 36 43-79 193-228 (406)
405 TIGR00065 ftsZ cell division p 86.3 0.93 2E-05 46.7 4.6 50 44-93 16-69 (349)
406 TIGR00137 gid_trmFO tRNA:m(5)U 86.3 0.9 2E-05 48.0 4.6 33 46-79 1-33 (433)
407 PRK08125 bifunctional UDP-gluc 86.2 6.2 0.00013 44.2 11.5 35 44-78 314-349 (660)
408 PRK13984 putative oxidoreducta 86.2 4 8.6E-05 45.2 9.9 35 44-79 282-316 (604)
409 PRK00257 erythronate-4-phospha 86.2 1 2.2E-05 47.0 4.8 35 42-77 113-147 (381)
410 PRK06199 ornithine cyclodeamin 86.1 4.4 9.5E-05 42.3 9.5 76 45-144 155-233 (379)
411 PRK09853 putative selenate red 86.1 3.3 7.2E-05 48.3 9.4 35 44-79 538-572 (1019)
412 PRK08303 short chain dehydroge 86.1 2.1 4.5E-05 43.0 7.0 35 43-78 6-41 (305)
413 PRK06701 short chain dehydroge 86.1 1.4 3.1E-05 43.7 5.8 68 8-78 11-79 (290)
414 PLN02695 GDP-D-mannose-3',5'-e 86.1 4.7 0.0001 41.7 9.8 34 44-78 20-54 (370)
415 PRK14618 NAD(P)H-dependent gly 86.0 1.1 2.3E-05 45.6 4.9 33 46-79 5-37 (328)
416 PLN02166 dTDP-glucose 4,6-dehy 86.0 5.6 0.00012 42.2 10.5 34 44-78 119-153 (436)
417 PRK08594 enoyl-(acyl carrier p 86.0 2.7 5.9E-05 40.9 7.6 34 43-77 5-41 (257)
418 smart00846 Gp_dh_N Glyceraldeh 85.9 0.68 1.5E-05 41.7 3.0 103 47-155 2-108 (149)
419 PRK08703 short chain dehydroge 85.8 1.9 4.1E-05 41.1 6.3 36 43-79 4-40 (239)
420 cd01338 MDH_choloroplast_like 85.8 0.93 2E-05 46.1 4.3 32 46-77 3-41 (322)
421 PRK08589 short chain dehydroge 85.8 2 4.2E-05 42.1 6.5 34 43-77 4-38 (272)
422 PF13738 Pyr_redox_3: Pyridine 85.8 0.88 1.9E-05 42.2 3.9 33 43-76 165-197 (203)
423 PRK07904 short chain dehydroge 85.8 5.4 0.00012 38.6 9.6 34 45-78 8-42 (253)
424 CHL00194 ycf39 Ycf39; Provisio 85.7 7 0.00015 39.2 10.7 31 47-78 2-33 (317)
425 PRK06487 glycerate dehydrogena 85.7 1.1 2.3E-05 45.6 4.6 90 42-181 145-235 (317)
426 PLN02858 fructose-bisphosphate 85.7 3.6 7.8E-05 49.9 9.8 34 44-78 3-36 (1378)
427 TIGR01759 MalateDH-SF1 malate 85.7 1 2.2E-05 45.9 4.5 32 46-77 4-42 (323)
428 PRK07060 short chain dehydroge 85.6 1.3 2.8E-05 42.2 5.1 35 43-78 7-42 (245)
429 TIGR03325 BphB_TodD cis-2,3-di 85.6 1.8 4E-05 41.9 6.2 35 43-78 3-38 (262)
430 PRK13018 cell division protein 85.6 1.6 3.4E-05 45.4 5.9 38 44-81 27-66 (378)
431 PF03447 NAD_binding_3: Homose 85.6 3.5 7.6E-05 35.0 7.2 85 52-180 1-91 (117)
432 PRK06171 sorbitol-6-phosphate 85.6 3.8 8.3E-05 39.6 8.4 76 43-121 7-84 (266)
433 PRK08220 2,3-dihydroxybenzoate 85.5 3.2 6.8E-05 39.7 7.7 36 43-79 6-42 (252)
434 PRK09135 pteridine reductase; 85.5 4.6 0.0001 38.3 8.9 34 44-78 5-39 (249)
435 cd01337 MDH_glyoxysomal_mitoch 85.5 1.1 2.5E-05 45.2 4.7 32 47-78 2-35 (310)
436 PRK08340 glucose-1-dehydrogena 85.5 4.2 9E-05 39.3 8.6 31 47-78 2-33 (259)
437 TIGR01289 LPOR light-dependent 85.4 4.5 9.6E-05 40.7 9.0 35 44-78 2-37 (314)
438 PRK06270 homoserine dehydrogen 85.4 5.1 0.00011 41.1 9.5 22 46-67 3-24 (341)
439 PLN00016 RNA-binding protein; 85.3 4.3 9.4E-05 41.9 9.1 35 44-79 51-90 (378)
440 PRK06128 oxidoreductase; Provi 85.3 2.4 5.2E-05 42.2 7.0 33 43-76 53-86 (300)
441 TIGR01317 GOGAT_sm_gam glutama 85.3 5.5 0.00012 42.9 10.1 35 44-79 142-176 (485)
442 PLN02740 Alcohol dehydrogenase 85.2 6.1 0.00013 40.8 10.2 35 44-78 198-232 (381)
443 PRK06179 short chain dehydroge 85.2 3.5 7.6E-05 40.0 8.0 36 44-80 3-39 (270)
444 PRK12937 short chain dehydroge 85.1 2.5 5.5E-05 40.1 6.8 33 43-76 3-36 (245)
445 smart00859 Semialdhyde_dh Semi 85.1 9.3 0.0002 32.5 9.7 24 47-70 1-26 (122)
446 PLN00112 malate dehydrogenase 85.1 2.5 5.5E-05 44.9 7.2 77 44-144 99-186 (444)
447 PRK10217 dTDP-glucose 4,6-dehy 85.1 3.7 7.9E-05 41.8 8.4 32 46-77 2-34 (355)
448 PRK01747 mnmC bifunctional tRN 85.1 1.1 2.4E-05 50.1 4.9 33 46-79 261-293 (662)
449 PRK11101 glpA sn-glycerol-3-ph 84.8 1.3 2.8E-05 48.5 5.0 36 45-81 6-41 (546)
450 TIGR02415 23BDH acetoin reduct 84.8 5.1 0.00011 38.3 8.8 32 46-78 1-33 (254)
451 PF08659 KR: KR domain; Inter 84.7 5.5 0.00012 36.6 8.6 59 47-123 2-61 (181)
452 PRK06720 hypothetical protein; 84.7 3.1 6.7E-05 38.1 6.8 35 43-78 14-49 (169)
453 TIGR01500 sepiapter_red sepiap 84.6 4.9 0.00011 38.8 8.6 58 47-124 2-64 (256)
454 PLN02256 arogenate dehydrogena 84.6 1.5 3.2E-05 44.3 5.0 33 44-77 35-67 (304)
455 PF00240 ubiquitin: Ubiquitin 84.6 2.2 4.8E-05 32.4 5.0 59 381-458 7-65 (69)
456 PRK12828 short chain dehydroge 84.5 1.3 2.9E-05 41.8 4.5 36 43-79 5-41 (239)
457 cd02201 FtsZ_type1 FtsZ is a G 84.5 1.6 3.5E-05 44.0 5.3 40 46-85 1-42 (304)
458 PRK05442 malate dehydrogenase; 84.4 1.3 2.8E-05 45.2 4.6 33 45-77 4-43 (326)
459 TIGR01745 asd_gamma aspartate- 84.4 2.4 5.2E-05 43.8 6.5 108 46-195 1-114 (366)
460 PTZ00188 adrenodoxin reductase 84.4 8.5 0.00018 41.5 10.8 95 44-145 38-137 (506)
461 PRK12831 putative oxidoreducta 84.4 5.4 0.00012 42.7 9.5 34 44-78 139-172 (464)
462 PRK00711 D-amino acid dehydrog 84.3 1.5 3.2E-05 45.8 5.1 32 47-79 2-33 (416)
463 PRK08628 short chain dehydroge 84.3 3.2 6.9E-05 40.0 7.2 35 43-78 5-40 (258)
464 PRK07531 bifunctional 3-hydrox 84.3 1.4 3E-05 47.7 5.0 33 46-79 5-37 (495)
465 TIGR01758 MDH_euk_cyt malate d 84.2 1.2 2.6E-05 45.3 4.3 31 47-77 1-38 (324)
466 TIGR02441 fa_ox_alpha_mit fatt 84.2 0.58 1.2E-05 53.0 2.1 33 46-79 336-368 (737)
467 TIGR02622 CDP_4_6_dhtase CDP-g 84.2 1.6 3.4E-05 44.5 5.2 36 43-79 2-38 (349)
468 PRK10538 malonic semialdehyde 84.2 2.4 5.3E-05 40.7 6.2 31 47-78 2-33 (248)
469 PRK09126 hypothetical protein; 84.1 1.3 2.8E-05 45.8 4.5 36 44-80 2-37 (392)
470 PRK08507 prephenate dehydrogen 84.1 1.5 3.3E-05 43.3 4.9 31 47-77 2-33 (275)
471 PF03721 UDPG_MGDP_dh_N: UDP-g 84.1 1.5 3.2E-05 40.9 4.5 85 46-143 1-85 (185)
472 PRK06914 short chain dehydroge 84.0 3 6.5E-05 40.7 7.0 35 44-79 2-37 (280)
473 PRK10084 dTDP-glucose 4,6 dehy 84.0 3.5 7.6E-05 41.9 7.6 30 47-76 2-32 (352)
474 PRK12825 fabG 3-ketoacyl-(acyl 84.0 3.5 7.6E-05 39.0 7.2 30 44-74 5-35 (249)
475 PRK06200 2,3-dihydroxy-2,3-dih 84.0 2 4.3E-05 41.7 5.5 36 43-79 4-40 (263)
476 PRK07791 short chain dehydroge 84.0 3.6 7.8E-05 40.7 7.5 35 43-78 4-39 (286)
477 PRK11749 dihydropyrimidine deh 83.9 6.9 0.00015 41.6 10.1 96 44-144 139-235 (457)
478 PF02629 CoA_binding: CoA bind 83.9 1.6 3.4E-05 36.0 4.1 82 44-156 2-84 (96)
479 PRK07608 ubiquinone biosynthes 83.8 1.5 3.2E-05 45.2 4.8 35 45-80 5-39 (388)
480 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.8 1.5 3.3E-05 47.5 5.0 35 44-79 4-38 (503)
481 TIGR03451 mycoS_dep_FDH mycoth 83.7 6.2 0.00013 40.3 9.4 34 44-77 176-209 (358)
482 PLN02986 cinnamyl-alcohol dehy 83.7 5.7 0.00012 39.8 9.0 31 44-75 4-35 (322)
483 PRK08085 gluconate 5-dehydroge 83.7 2.6 5.7E-05 40.5 6.3 35 43-78 7-42 (254)
484 cd01336 MDH_cytoplasmic_cytoso 83.6 1.5 3.3E-05 44.6 4.7 33 46-78 3-42 (325)
485 PF05368 NmrA: NmrA-like famil 83.6 9.1 0.0002 36.4 9.9 70 48-143 1-73 (233)
486 TIGR03315 Se_ygfK putative sel 83.6 6.3 0.00014 46.2 10.1 35 44-79 536-570 (1012)
487 TIGR03364 HpnW_proposed FAD de 83.6 1.6 3.6E-05 44.6 5.0 34 47-81 2-35 (365)
488 KOG1371|consensus 83.6 2.8 6.2E-05 42.3 6.4 75 45-139 2-82 (343)
489 PRK08410 2-hydroxyacid dehydro 83.4 1.6 3.4E-05 44.3 4.7 93 42-182 142-235 (311)
490 PRK05786 fabG 3-ketoacyl-(acyl 83.4 1.9 4.1E-05 40.9 5.1 35 43-78 3-38 (238)
491 PRK06185 hypothetical protein; 83.4 1.5 3.2E-05 45.6 4.7 35 44-79 5-39 (407)
492 PRK07984 enoyl-(acyl carrier p 83.4 3.4 7.4E-05 40.4 7.0 35 43-78 4-41 (262)
493 PRK07236 hypothetical protein; 83.3 1.6 3.4E-05 45.3 4.8 35 44-79 5-39 (386)
494 COG0287 TyrA Prephenate dehydr 83.2 4.1 8.9E-05 40.6 7.5 34 45-79 3-36 (279)
495 PRK08017 oxidoreductase; Provi 83.2 2 4.3E-05 41.2 5.2 33 45-78 2-35 (256)
496 PRK12775 putative trifunctiona 83.2 7.3 0.00016 45.9 10.6 93 44-144 429-527 (1006)
497 TIGR02028 ChlP geranylgeranyl 83.2 1.5 3.2E-05 45.9 4.6 31 47-78 2-32 (398)
498 TIGR02371 ala_DH_arch alanine 83.2 6.1 0.00013 40.2 8.9 75 44-144 127-202 (325)
499 COG0136 Asd Aspartate-semialde 83.0 6.7 0.00015 39.9 8.9 108 46-196 2-115 (334)
500 PRK00517 prmA ribosomal protei 82.9 21 0.00045 34.7 12.3 34 44-79 119-152 (250)
No 1
>KOG2015|consensus
Probab=100.00 E-value=2.2e-95 Score=696.54 Aligned_cols=412 Identities=62% Similarity=1.062 Sum_probs=395.0
Q ss_pred hhhhHHHHHhhcCCCCCCC---CCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccC
Q psy7810 14 ARKWNHLRKVLERPGPFCT---SPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFL 90 (478)
Q Consensus 14 ~~r~~~~~~l~~r~~~f~~---~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl 90 (478)
..||.+.+++++|+|||.. ++++|+++.+ .+.|||||||||+|||++|||+++||+.+++||+|+|+++|||||||
T Consensus 7 s~r~~~~~~~l~r~gpf~~~~f~~~~e~l~~l-~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFL 85 (422)
T KOG2015|consen 7 SKRWNGWRQSLERPGPFNLDAFEPSEENLEFL-QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFL 85 (422)
T ss_pred hhhhHHHHHHhcCCCCCCCCCCCCCHHHHHHH-hhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhc
Confidence 6799999999999999997 9999999965 78999999999999999999999999999999999999999999999
Q ss_pred CCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCC
Q psy7810 91 FRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQS 170 (478)
Q Consensus 91 ~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~ 170 (478)
|+++|||++||++||+++++..|.+.|.+|..+|++++.+|+++||+||+++|++++|+|||.+...+..+ |..+..
T Consensus 86 F~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~---g~~d~~ 162 (422)
T KOG2015|consen 86 FRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLE---GNYDIS 162 (422)
T ss_pred ccccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhc---cCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887665 666667
Q ss_pred CceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCCC
Q psy7810 171 TIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCD 250 (478)
Q Consensus 171 ~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~~ 250 (478)
.-+|+||+|++|++|++++++|+.|+|++|+.+.+|++.+||.|||.++|+.|+|
T Consensus 163 ~iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEH------------------------- 217 (422)
T KOG2015|consen 163 SIIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEH------------------------- 217 (422)
T ss_pred ceeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchH-------------------------
Confidence 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHH
Q psy7810 251 LPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAA 330 (478)
Q Consensus 251 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivag 330 (478)
|++|++.++|.+.+++|..++.||+.|++||++.+++||..|+|+++++.++.|+++.|||++|+|||+||+
T Consensus 218 --------ciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA 289 (422)
T KOG2015|consen 218 --------CIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAA 289 (422)
T ss_pred --------hhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHH
Confidence 888888999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCCccCCCCCCCeEEEEcCCCCcHHHHHHHHhcCCCCCccC
Q psy7810 331 TCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKS 410 (478)
Q Consensus 331 l~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~vC~~~~~~~~~~~~~~~~Tl~~li~~l~~~~~~~~~~ 410 (478)
.+|.||+|+++....+++||++|++.+|.+++++.+++.++|+||+ .....+.++++. ||+++++++++ .|+|..
T Consensus 290 ~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~er~~nC~vCS--~~~~~~~ispt~-tl~~vl~~ls~--~~~lk~ 364 (422)
T KOG2015|consen 290 VCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLLERDKNCPVCS--NLVQNYDISPTV-TLEDVLNHLSK--SFQLKS 364 (422)
T ss_pred HHHHHHHHHHHhcchhhhhheeeecccceeEEEeeeccCCCCcccc--CCCcccccCCcc-cHHHHHHHhhh--hhccCC
Confidence 9999999999999999999999999999999999999999999999 778888888754 99999999997 999999
Q ss_pred CcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEecCCCCeeEEEEEEe
Q psy7810 411 PGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRV 472 (478)
Q Consensus 411 ~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~d~~~~~~~~~~i~~ 472 (478)
|++++.. .+.||.+++|++|+.++.||.++|++| .+|++|.|+|...+..+++++++
T Consensus 365 p~~tt~~---~~~ly~~~~~~~e~~t~~nl~~~l~~l--~dg~~l~vtd~~~~~~l~~~l~~ 421 (422)
T KOG2015|consen 365 PALTTAA---GRTLYLSSVPSIEEATRKNLSQSLKEL--SDGQELVVTDKTLSTALTLQLRE 421 (422)
T ss_pred chhhhhh---cceEeecCCcHHHHHhhhhhhhhHHHh--cCCceEEEecccCCcceeEEEec
Confidence 9998642 479999999999999999999999999 99999999999999999999986
No 2
>KOG2013|consensus
Probab=100.00 E-value=1.1e-84 Score=650.22 Aligned_cols=403 Identities=35% Similarity=0.590 Sum_probs=331.7
Q ss_pred hHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC
Q psy7810 36 SEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGV 115 (478)
Q Consensus 36 ~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v 115 (478)
+..+++.+.++|||||||||||||++|+|+++|+++|||||.|+|++|||||||||+.+|||++||.+|++.++++||.+
T Consensus 3 ~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~ 82 (603)
T KOG2013|consen 3 PREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNI 82 (603)
T ss_pred hHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCC
Confidence 34456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC--CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEEEcCC
Q psy7810 116 KVIPHFCKIQD--YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPG 193 (478)
Q Consensus 116 ~i~~~~~~i~~--~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~ 193 (478)
++.+++.+|.+ ++.+||++||+|.+|+||.+||+++|++|. .+.+|+|++|+.||.||++++++|
T Consensus 83 ~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~-------------~a~vPLIesGt~Gf~GQv~~ii~G 149 (603)
T KOG2013|consen 83 KLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCL-------------AASVPLIESGTGGFLGQVQVIIKG 149 (603)
T ss_pred ceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHH-------------hhcCCceecCcccccceEEEEecC
Confidence 99999999976 468999999999999999999999999998 468999999999999999999999
Q ss_pred CCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhc-cccccccCCC-----------C-----------------
Q psy7810 194 MTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVT-YPLCTIASTP-----------R----------------- 244 (478)
Q Consensus 194 ~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~-~~~~~~~~~~-----------~----------------- 244 (478)
.|+||+|... |.+++||+||||++|+.|+|||+|||++ |.++|..... .
T Consensus 150 kTECyeC~pK--~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~ 227 (603)
T KOG2013|consen 150 KTECYECIPK--PVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETE 227 (603)
T ss_pred CcceecccCC--CCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccch
Confidence 9999999975 7788999999999999999999999964 5555443110 0
Q ss_pred -CC----------CCCCCCC-----CCchhhHHHHHHh--hhccC-----------------------------------
Q psy7810 245 -LP----------EHCDLPP-----RLPEHCIEYVKVI--QWSKE----------------------------------- 271 (478)
Q Consensus 245 -~~----------~~~~~~~-----~~~~~c~~~~~~~--~~~~~----------------------------------- 271 (478)
+. ...++++ +++..-|+|++-. .|+..
T Consensus 228 d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~ 307 (603)
T KOG2013|consen 228 DLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQN 307 (603)
T ss_pred HHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcc
Confidence 00 0001100 1111223332211 23211
Q ss_pred -------------------------CCCC-CCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHH
Q psy7810 272 -------------------------NPFD-CPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTN 325 (478)
Q Consensus 272 -------------------------~~~~-~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tn 325 (478)
.++. ..|||||...++||+++||+||+.|||+.++.|++|+||||||||||+||
T Consensus 308 v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTN 387 (603)
T KOG2013|consen 308 VWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTN 387 (603)
T ss_pred eeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhh
Confidence 1111 28999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccceEEEeeCC---CceEEeeccccCCCCccCCCCCCCeEEEEcCCCCcHHHHHHHHhc
Q psy7810 326 AVIAATCATEVFKLATGCATSLNNYMVFNDVA---GIYTYTYEAERKSNCLACGPANQPKYLDIESLDMKLSELIELLCQ 402 (478)
Q Consensus 326 Aivagl~~~EalK~l~~~~~pl~n~~~~~~~~---g~~~~~~~~~~~~~C~vC~~~~~~~~~~~~~~~~Tl~~li~~l~~ 402 (478)
|||||+++.|++|+|+|....++.-+++-.+. -........+|||+|+||+ .++..+.++..++||.+|++.+.+
T Consensus 388 AiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs--~~~~~l~ln~~~~~~~~L~D~ivk 465 (603)
T KOG2013|consen 388 AIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCS--EVPLVLELNTRKSTLRDLVDKIVK 465 (603)
T ss_pred hHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecccccCCCCCCCcccc--ccceEEEeccccchHHHHHHHHHH
Confidence 99999999999999998876555544443332 1234455679999999999 888999999999999999997644
Q ss_pred CCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEecCCCCeeEE
Q psy7810 403 HPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLE 467 (478)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~d~~~~~~~~ 467 (478)
.+++| .|+|+.. + .++||+. ++++||+|+|+|||+.+|+.+.+.|...+..+.
T Consensus 466 -~r~~~-~pdvsll-~--~~Li~~~-------d~e~n~~k~lsel~i~ngsli~~~~e~~d~~~~ 518 (603)
T KOG2013|consen 466 -TRLGY-LPDVSLL-D--DDLIDDM-------DFEDNLDKTLSELGILNGSLINVKDEILDPVLE 518 (603)
T ss_pred -HHhcc-Ccccchh-h--hhhcccc-------cchhhhhhhHHhhCCCCCceEeeecccCCccee
Confidence 47899 7888653 3 3566654 388999999999999999999999965554433
No 3
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=5.3e-75 Score=572.24 Aligned_cols=291 Identities=72% Similarity=1.275 Sum_probs=274.4
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||+|||||+++|||++||++|+++++++||+++|+++..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCC
Q psy7810 127 YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFP 206 (478)
Q Consensus 127 ~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p 206 (478)
++.+|+++||+||+|+||.++|+++|+.|..+..+ .+++.++|+|++|+.|+.|++++++|+.|+||+|..+..|
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~-----~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p 155 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLY-----EDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFP 155 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccc-----cccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCC
Confidence 88899999999999999999999999998755321 1224679999999999999999999999999999999889
Q ss_pred CCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhH
Q psy7810 207 PQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHI 286 (478)
Q Consensus 207 ~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l 286 (478)
+++++|+|||+++|+.|+|||+||+ .++|+.+++.. .||+||++|+
T Consensus 156 ~~~~~p~Cti~~~P~~~~hci~~a~---------------------------------~~~~~~~~~~~-~~~~d~~~~~ 201 (291)
T cd01488 156 PQVTFPLCTIANTPRLPEHCIEYAS---------------------------------LIQWPKEFPFV-PLDGDDPEHI 201 (291)
T ss_pred CCCCCCcccccCCCCCcchheeeee---------------------------------eeecccccCCC-cCCCCCHHHH
Confidence 9999999999999999999666665 46788777664 8999999999
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHHHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeecc
Q psy7810 287 NWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEA 366 (478)
Q Consensus 287 ~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~ 366 (478)
+||+++|++||++|||++++++.++++++||||++++|||||||+++.|++|+++++.++++||++|.|..|.+++++..
T Consensus 202 ~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~ 281 (291)
T cd01488 202 EWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEH 281 (291)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccCC
Q psy7810 367 ERKSNCLACG 376 (478)
Q Consensus 367 ~~~~~C~vC~ 376 (478)
+++|+|++|+
T Consensus 282 ~~~~~c~~c~ 291 (291)
T cd01488 282 ERKEDCPVCS 291 (291)
T ss_pred eeCCCCCCCC
Confidence 9999999997
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=3e-70 Score=562.80 Aligned_cols=353 Identities=29% Similarity=0.526 Sum_probs=289.9
Q ss_pred eEEEECCchHHHHHHHHHHHhCC-----CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGF-----NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gv-----g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
||+||||||+|||++|||+++|| |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-----CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEEEcCCCCc
Q psy7810 122 CKIQD-----YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTA 196 (478)
Q Consensus 122 ~~i~~-----~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~ 196 (478)
.++.+ ++.+|++++|+||+|+||.++|.++|++|+ ..++|+|++|+.|+.|++++++|+.|+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~-------------~~~iPli~~gt~G~~G~v~v~iP~~te 147 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCV-------------YYRKPLLESGTLGTKGNTQVVIPHLTE 147 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------HhCCCEEEEecccceeEEEEEeCCCCC
Confidence 88864 346899999999999999999999999998 568999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCCCCCCCCchhhHHHHHHh----------
Q psy7810 197 CIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVI---------- 266 (478)
Q Consensus 197 c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~---------- 266 (478)
||+|..+ |+++++|.||++++|+.++|||+|||+.|+.++........ ..+.++|+.|++..
T Consensus 148 ~y~~~~~--p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~------~~~~~~c~~~a~~~f~~~F~~~I~ 219 (435)
T cd01490 148 SYSSSRD--PPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVN------QYLFEDCVRWARLLFEKYFNNNIK 219 (435)
T ss_pred CccCCCC--CCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccchHHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865 77789999999999999999999999998776643322111 01134455555421
Q ss_pred -----------------hhccCC--C--------------------------CC-CCCCCCCh--hhHHHHHHHHHHHHH
Q psy7810 267 -----------------QWSKEN--P--------------------------FD-CPIDGDDP--NHINWIYEKASERAS 298 (478)
Q Consensus 267 -----------------~~~~~~--~--------------------------~~-~~~d~dd~--~~l~~v~~~a~~ra~ 298 (478)
+|+..+ | ++ ..|+|||+ .|++||+++||+||+
T Consensus 220 ~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~FeKDdd~n~h~~fi~a~snlRa~ 299 (435)
T cd01490 220 QLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEKDDDTNFHMDFITAASNLRAR 299 (435)
T ss_pred HHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCchhHHHHHHHHhhhhHHH
Confidence 232211 1 01 25888886 599999999999999
Q ss_pred hcCCCccchhhhhhhhcccccccccHHHHHHHHHHHHHHHHhcCCCCCccceEE-EeeCCCceEEeeccccCCCCccC-C
Q psy7810 299 QFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMV-FNDVAGIYTYTYEAERKSNCLAC-G 376 (478)
Q Consensus 299 ~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl~~~EalK~l~~~~~pl~n~~~-~~~~~g~~~~~~~~~~~~~C~vC-~ 376 (478)
+|+|++++++++|+|||+||||||||||||||++++|++|++.+.. ++..|.. |..+ +.+...++.|..|.+..| .
T Consensus 300 ~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~-~~~~~~n~~~nl-a~p~~~~~~p~~~~~~~~~~ 377 (435)
T cd01490 300 NYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKR-PLEAYKNAFLNL-ALPFFAFSEPIPAPKVKYAY 377 (435)
T ss_pred HcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCc-cHHHcchHhhhc-cCCccccccCCCCCccccCC
Confidence 9999999999999999999999999999999999999999999874 3333321 2222 333444444444445556 2
Q ss_pred --CCCCCeEEEEcCCCCcHHHHH-HHHhcCCCCCccCCcceEeecCCccEEEecCc
Q psy7810 377 --PANQPKYLDIESLDMKLSELI-ELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTV 429 (478)
Q Consensus 377 --~~~~~~~~~~~~~~~Tl~~li-~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~ 429 (478)
.|+.|+++.++. ++|+++|+ +++++ +++++...|+.+ ..+||....
T Consensus 378 ~~~~t~Wdr~~v~~-~~t~~~~~~~~~~~--~~~~~v~~i~~g----~~~ly~~~~ 426 (435)
T cd01490 378 DEEWTIWDRFEVKG-KQTLQELLIDYFKE--KYGLEVTMLSQG----VSMLYSSFM 426 (435)
T ss_pred CCEEeeEeEEEEcC-CCcHHHHHHHHHHH--HhCCeEEEEEeC----CeEEEeecC
Confidence 278999999975 57999999 99988 888885544433 789998763
No 5
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.2e-70 Score=617.17 Aligned_cols=395 Identities=26% Similarity=0.467 Sum_probs=323.6
Q ss_pred hhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCC-----CeEEEEeCCcCCccCCcc
Q psy7810 13 MARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGF-----NEIHVIDMDTIDLSNLNR 87 (478)
Q Consensus 13 ~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gv-----g~i~iiD~D~v~~sNL~r 87 (478)
...||+||+++| |.+.|+ +|++++|+||||||||||++|||+++|| |+|+|+|+|+|+.|||||
T Consensus 398 ~~~RYdrqi~l~----------G~~~Q~-kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnR 466 (1008)
T TIGR01408 398 RGDRYDAQIAVF----------GDTFQQ-KLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNR 466 (1008)
T ss_pred hhhhhHHHHHHc----------CHHHHH-HHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCc
Confidence 478999999999 777655 6799999999999999999999999999 899999999999999999
Q ss_pred ccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC-----CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhcc
Q psy7810 88 QFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD-----YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYE 162 (478)
Q Consensus 88 qfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~-----~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~ 162 (478)
||||+.+|||++||++|+++++++||+++|+++..++.. ++.+||+++|+||+|+||.++|.++|+.|+
T Consensus 467 QfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~------ 540 (1008)
T TIGR01408 467 QFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCL------ 540 (1008)
T ss_pred CcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHH------
Confidence 999999999999999999999999999999999998854 236899999999999999999999999998
Q ss_pred ccCcccCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhcccccccc--
Q psy7810 163 EDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIA-- 240 (478)
Q Consensus 163 ~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~-- 240 (478)
..++|+|++|+.|+.|++++++|+.|+||.|..+ |+++++|.|||+++|+.++|||+|||+.|..++..
T Consensus 541 -------~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d--~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~ 611 (1008)
T TIGR01408 541 -------AFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRD--PPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKP 611 (1008)
T ss_pred -------HcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCC--CCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhH
Confidence 5789999999999999999999999999999865 78889999999999999999999999988654321
Q ss_pred -------CCC-C---------CC----------C-CCCCCCCCchhhHHHHHHh--------------------------
Q psy7810 241 -------STP-R---------LP----------E-HCDLPPRLPEHCIEYVKVI-------------------------- 266 (478)
Q Consensus 241 -------~~~-~---------~~----------~-~~~~~~~~~~~c~~~~~~~-------------------------- 266 (478)
.++ . .. + .....|..+++|++||+..
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~ 691 (1008)
T TIGR01408 612 SLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGS 691 (1008)
T ss_pred HHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCC
Confidence 111 0 00 0 0122345566677776532
Q ss_pred -hhccC--------------------------------------------------------------------------
Q psy7810 267 -QWSKE-------------------------------------------------------------------------- 271 (478)
Q Consensus 267 -~~~~~-------------------------------------------------------------------------- 271 (478)
+|+..
T Consensus 692 ~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~ 771 (1008)
T TIGR01408 692 PFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKP 771 (1008)
T ss_pred ccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcc
Confidence 23210
Q ss_pred C----------------------------CCCCCCCCCChh--hHHHHHHHHHHHHHhcCCCccchhhhhhhhccccccc
Q psy7810 272 N----------------------------PFDCPIDGDDPN--HINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAV 321 (478)
Q Consensus 272 ~----------------------------~~~~~~d~dd~~--~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPai 321 (478)
. ..+.+|+|||+. |++||+++||+||.+|+|++++++.+|.|||+|||||
T Consensus 772 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAi 851 (1008)
T TIGR01408 772 DTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAI 851 (1008)
T ss_pred cccccchHHHHHHHHHHhhccccccCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchh
Confidence 0 001269998865 9999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCccceE-EEeeCCCceEEeeccccCCCCccCC---CC-CCCeEEEEcCCCCcHHHH
Q psy7810 322 ASTNAVIAATCATEVFKLATGCATSLNNYM-VFNDVAGIYTYTYEAERKSNCLACG---PA-NQPKYLDIESLDMKLSEL 396 (478)
Q Consensus 322 a~tnAivagl~~~EalK~l~~~~~pl~n~~-~~~~~~g~~~~~~~~~~~~~C~vC~---~~-~~~~~~~~~~~~~Tl~~l 396 (478)
|||+|+|+|+++.|++|++.|.. ++..|. .|.+. ++++..+ .+|.|-|.+|. .| +.|+++.+.. ++||++|
T Consensus 852 ATTTA~vaGLv~lEl~Kv~~~~~-~i~~~kn~f~nl-alp~~~~-seP~~~~~~~~~~~~~~t~WDr~~i~~-~~Tl~~~ 927 (1008)
T TIGR01408 852 ATSTATVSGLVCLELIKVTDGGY-KFEVYKNCFLNL-AIPLFVF-TEPTEVRKTKIRNGISFTIWDRWTLHG-DFTLLEF 927 (1008)
T ss_pred hhHHHHHHHHHHHHHHHHHhccc-cHHHHhHHHHhh-ccccccc-cCCCCCCceeecCceeccceEEEEecC-CCcHHHH
Confidence 99999999999999999999863 333332 12222 3333322 34566666663 36 7899999965 6799999
Q ss_pred HHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccc
Q psy7810 397 IELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVEL 447 (478)
Q Consensus 397 i~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l 447 (478)
++++++ +|+++.-.|+. +.++||.+.. ...+++|+++|+||
T Consensus 928 i~~~~~--~~~~~v~~is~----g~~~lY~~~~----~~~~erl~~~l~el 968 (1008)
T TIGR01408 928 INAVKE--KYGLEPTMVSQ----GVKLLYVPVM----PGHAERLKLKMHKL 968 (1008)
T ss_pred HHHHHH--HhCCeeEEEEc----CceEEEeccc----hhhHHhcCCCHHHH
Confidence 999998 88887544443 3789998763 23578999999999
No 6
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=8e-68 Score=526.68 Aligned_cols=299 Identities=38% Similarity=0.679 Sum_probs=256.6
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
||+|||+||+|||++|||+++|||+|+|+|+|.|+.+||+|||||+++|||++||++++++++++||+++|+++..++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEEEcCCCCccccccCCC
Q psy7810 127 --YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDL 204 (478)
Q Consensus 127 --~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~ 204 (478)
++.+|+++||+||+|+|+.++|.++|++|+ ..++|+|++|+.|+.|++++++|+.|+||+|..+
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~-------------~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~- 146 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCL-------------AADVPLIESGTTGFLGQVQVIKKGKTECYECQPK- 146 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------HCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC-
Confidence 357899999999999999999999999998 5689999999999999999999999999999976
Q ss_pred CCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCCCCCCCCchhhHHHH--HHhhhccCCC-C-----CC
Q psy7810 205 FPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYV--KVIQWSKENP-F-----DC 276 (478)
Q Consensus 205 ~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~~~~-~-----~~ 276 (478)
++++++|.|||+++|+.++|||+|||..|....- .+..-+... ...+|..+++ . ..
T Consensus 147 -~~~~~~pictI~~~p~~~~hci~~a~~~f~~~~~---------------~f~~~i~~l~~~~~~w~~~~~p~p~~~~~~ 210 (312)
T cd01489 147 -ETPKTFPVCTIRSTPSQPIHCIVWAKSLFFLFNK---------------VFKDDIERLLSMEELWKTRKPPVPLSWKEL 210 (312)
T ss_pred -CCCCcCCcceecCCCCCCEeehhHHHHHHHHHHH---------------HHHHHHHHHHhhhhhhcCCCCCCCCCCCCc
Confidence 6668999999999999999999999997651100 000001100 0225654431 1 13
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHHHHHHHHHHHhcCCCCCccc-eEEEe-
Q psy7810 277 PIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNN-YMVFN- 354 (478)
Q Consensus 277 ~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl~~~EalK~l~~~~~pl~n-~~~~~- 354 (478)
+|||||++|++||+++||+||++|||+.+|++++|+|+|+||||||||||||||++++|++|++++......+ |+.+.
T Consensus 211 ~fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~ 290 (312)
T cd01489 211 TFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQP 290 (312)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999987554444 32222
Q ss_pred -eCCCceEEeeccccCCCCccC
Q psy7810 355 -DVAGIYTYTYEAERKSNCLAC 375 (478)
Q Consensus 355 -~~~g~~~~~~~~~~~~~C~vC 375 (478)
+...........+|||+|.||
T Consensus 291 ~~~~~~~~~~~~~~~n~~c~~c 312 (312)
T cd01489 291 NRRKRLLVPCKLDPPNPNCYVC 312 (312)
T ss_pred CCCCcEecCCCCCCcCCCCCCC
Confidence 222234566678899999999
No 7
>KOG2012|consensus
Probab=100.00 E-value=8.2e-66 Score=540.83 Aligned_cols=398 Identities=27% Similarity=0.442 Sum_probs=320.3
Q ss_pred chhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCC-----CeEEEEeCCcCCccCCc
Q psy7810 12 NMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGF-----NEIHVIDMDTIDLSNLN 86 (478)
Q Consensus 12 ~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gv-----g~i~iiD~D~v~~sNL~ 86 (478)
....|||.|+.++ |.+ +|++|.+.++++||||+||||++||++++|+ |.|++.|+|.||.||||
T Consensus 408 prgsRYD~qiavf----------G~~-fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLn 476 (1013)
T KOG2012|consen 408 PRGSRYDGQIAVF----------GAK-FQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLN 476 (1013)
T ss_pred cccCccccchhhh----------chH-HHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhcccc
Confidence 3467999999999 677 5667899999999999999999999999999 47999999999999999
Q ss_pred cccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC-----CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhc
Q psy7810 87 RQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD-----YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQY 161 (478)
Q Consensus 87 rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~-----~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~ 161 (478)
||||||+.|||++|+++|+.+++.+||+++|+++..++.. ++++||++.|+|.+|+||+.||+|+++.|+
T Consensus 477 RQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv----- 551 (1013)
T KOG2012|consen 477 RQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCV----- 551 (1013)
T ss_pred ceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhh-----
Confidence 9999999999999999999999999999999999999863 578999999999999999999999999998
Q ss_pred cccCcccCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccc--
Q psy7810 162 EEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTI-- 239 (478)
Q Consensus 162 ~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~-- 239 (478)
-..+|++++||.|.+|+.++++|..|+.|....+ |+++++|+||++++|...+|||+|||+.|+.++-
T Consensus 552 --------~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~D--PPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~ 621 (1013)
T KOG2012|consen 552 --------YYRKPLLESGTLGTKGNTQVVVPHLTESYGSSRD--PPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQS 621 (1013)
T ss_pred --------hhccchhhccCcCCccceeEEeccccccccccCC--CcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCC
Confidence 3579999999999999999999999999987765 9999999999999999999999999998876542
Q ss_pred -------cCCCCCC--------------------CCCCCCCCCchhhHHHHHHh--------------------------
Q psy7810 240 -------ASTPRLP--------------------EHCDLPPRLPEHCIEYVKVI-------------------------- 266 (478)
Q Consensus 240 -------~~~~~~~--------------------~~~~~~~~~~~~c~~~~~~~-------------------------- 266 (478)
.+.+... +.+...|....+|++|+++.
T Consensus 622 ~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~ 701 (1013)
T KOG2012|consen 622 AENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGA 701 (1013)
T ss_pred HHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCC
Confidence 1222211 11123456677899998742
Q ss_pred -hhccCCCC-----------------------------------------------------------------------
Q psy7810 267 -QWSKENPF----------------------------------------------------------------------- 274 (478)
Q Consensus 267 -~~~~~~~~----------------------------------------------------------------------- 274 (478)
+|+.+++.
T Consensus 702 pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~ 781 (1013)
T KOG2012|consen 702 PFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSA 781 (1013)
T ss_pred cCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccc
Confidence 34321000
Q ss_pred ---------------------------CCCCCCCC--hhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHH
Q psy7810 275 ---------------------------DCPIDGDD--PNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTN 325 (478)
Q Consensus 275 ---------------------------~~~~d~dd--~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tn 325 (478)
+..|+||| ..|++||+++||+||++|.|++.++..+|+|+|.||||||||+
T Consensus 782 s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtT 861 (1013)
T KOG2012|consen 782 SVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTT 861 (1013)
T ss_pred cCCchHHHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehh
Confidence 12566666 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccceE-EEeeCCCc-eEEeeccccCCCCccCC-CCCCCeEEEEcCCCCcHHHHHHHHhc
Q psy7810 326 AVIAATCATEVFKLATGCATSLNNYM-VFNDVAGI-YTYTYEAERKSNCLACG-PANQPKYLDIESLDMKLSELIELLCQ 402 (478)
Q Consensus 326 Aivagl~~~EalK~l~~~~~pl~n~~-~~~~~~g~-~~~~~~~~~~~~C~vC~-~~~~~~~~~~~~~~~Tl~~li~~l~~ 402 (478)
|.++|++++|.+|++.|.. |+..|- .|.++.-. .....+.+..+.-.--. .|+.|+++.+..+ +||++|+++++.
T Consensus 862 a~v~Glv~LElyKv~~G~~-~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~-~tL~~~L~~~~~ 939 (1013)
T KOG2012|consen 862 AAVSGLVCLELYKVVDGKR-PVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGE-PTLREFLDHLEE 939 (1013)
T ss_pred HHHHHHHHhhhhhhccCCC-chHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCC-CCHHHHHHHHhh
Confidence 9999999999999999943 443332 23333211 11111222111100011 3789999999974 599999999987
Q ss_pred CCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccc
Q psy7810 403 HPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVEL 447 (478)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l 447 (478)
+++++...+ ..+..+||-...+ ...++|++++.+|
T Consensus 940 --~~gl~i~ml----s~G~~lly~~~~~----k~~erl~~~v~el 974 (1013)
T KOG2012|consen 940 --QHGLEITML----SQGVSLLYASFMP----KHAERLPLRVTEL 974 (1013)
T ss_pred --hcCceEEEE----eccceeehhhhhh----HHHHhcCCcHHHH
Confidence 778774333 3337789976543 5789999999988
No 8
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=2.3e-64 Score=484.57 Aligned_cols=231 Identities=65% Similarity=1.173 Sum_probs=217.7
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccC-
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQ- 125 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~- 125 (478)
||+|||+||+|||++|+|+++|||+|+|+|+|+|++|||+|||||+++|+|++||++++++++++||+++|+++..++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred --CCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEEEcCCCCccccccCC
Q psy7810 126 --DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLD 203 (478)
Q Consensus 126 --~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~ 203 (478)
+++.+|+++||+||+|+||.++|+++|++|+ ..++|+|++|+.|+.|++++++|+.|+||+|..
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~-------------~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~- 146 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLI-------------FLIVPLIESGTEGFKGNAQVILPGMTECIECTL- 146 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEcccCCceEEEEEcCCCCCCcccCC-
Confidence 4457899999999999999999999999998 568999999999999999999999999999998
Q ss_pred CCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCCh
Q psy7810 204 LFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDP 283 (478)
Q Consensus 204 ~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~ 283 (478)
.|+++++|.||++++|+.|+|||+||+ .++| ||+
T Consensus 147 -~~~~~~~p~Cti~~~P~~~~hci~~a~---------------------------------~~~~------------d~~ 180 (234)
T cd01484 147 -YPPQKNFPMCTIASMPRLPEHCIEWAR---------------------------------MLQW------------DDP 180 (234)
T ss_pred -CCCCCCCCccccCCCCCCchHHHHHHH---------------------------------HHHh------------CCH
Confidence 477789999999999999999555554 4555 789
Q ss_pred hhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHHHHHHHHH
Q psy7810 284 NHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVF 337 (478)
Q Consensus 284 ~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl~~~Eal 337 (478)
.|++||+++|++||++|||+++|++++++++||||||++||||||||+++.|++
T Consensus 181 ~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 181 EHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999974
No 9
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=4.7e-47 Score=367.51 Aligned_cols=237 Identities=24% Similarity=0.415 Sum_probs=205.3
Q ss_pred hhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCC
Q psy7810 14 ARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQ 93 (478)
Q Consensus 14 ~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~ 93 (478)
+.||+||+++|+ +|.+.|+ +|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+++||+||+||.+
T Consensus 2 ~~ry~Rq~~l~~--------~g~~~q~-~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~ 72 (240)
T TIGR02355 2 MLRYNRQIILRG--------FDFDGQE-ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSD 72 (240)
T ss_pred ccceeeeeeccc--------CCHHHHH-HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeH
Confidence 679999999984 3777655 6799999999999999999999999999999999999999999999999999
Q ss_pred CccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCc
Q psy7810 94 KDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTI 172 (478)
Q Consensus 94 ~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ 172 (478)
+|||++||++++++++++||+++|+++...+++.+ .++++++|+||+|+|++++|.++|++|+ +.+
T Consensus 73 ~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~-------------~~~ 139 (240)
T TIGR02355 73 ANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCF-------------AAK 139 (240)
T ss_pred hhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHH-------------HcC
Confidence 99999999999999999999999999998887644 6789999999999999999999999998 578
Q ss_pred eeEEEeeeeceeceEEEEc-CCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCCCC
Q psy7810 173 IPMVDGGTEGFKGNARVIL-PGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDL 251 (478)
Q Consensus 173 ip~i~~g~~G~~G~v~~~~-p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~~~ 251 (478)
+|+|.+++.|+.|++.++. +..++||+|..+.++... ..
T Consensus 140 ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~~~~~~~--------------~~-------------------------- 179 (240)
T TIGR02355 140 VPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSRLFGENA--------------LS-------------------------- 179 (240)
T ss_pred CCEEEEEecccEeEEEEEecCCCCCccccccccCCCCC--------------CC--------------------------
Confidence 9999999999999998665 456799999865433210 00
Q ss_pred CCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHHH
Q psy7810 252 PPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAAT 331 (478)
Q Consensus 252 ~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl 331 (478)
|. ..+.++|+++++|++
T Consensus 180 -------~~--------------------------------------------------------~~gv~~p~~~~~~~~ 196 (240)
T TIGR02355 180 -------CV--------------------------------------------------------EAGVMAPVVGVVGSL 196 (240)
T ss_pred -------cc--------------------------------------------------------ccCccchHHHHHHHH
Confidence 10 124568999999999
Q ss_pred HHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCCccC
Q psy7810 332 CATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLAC 375 (478)
Q Consensus 332 ~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~vC 375 (478)
+|+|++|+|+|.++++.+.+++.+.....+..+..+++|+|++|
T Consensus 197 ~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~~~~~C~~C 240 (240)
T TIGR02355 197 QAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLPKNPTCPVC 240 (240)
T ss_pred HHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEeccCCccCCCC
Confidence 99999999999988888766655555667788889999999999
No 10
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=2.6e-46 Score=386.51 Aligned_cols=247 Identities=21% Similarity=0.242 Sum_probs=211.8
Q ss_pred CCCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcc
Q psy7810 8 SSPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNR 87 (478)
Q Consensus 8 ~~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~r 87 (478)
..++++.+||+||+++- .+|.++|+ +|++++|+||||||+||+++++|+++|||+|+|+|+|+|+.|||+|
T Consensus 10 ~l~~~~~~ry~Rq~~l~--------~~g~~~q~-~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~R 80 (390)
T PRK07411 10 QLSKDEYERYSRHLILP--------EVGLEGQK-RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQR 80 (390)
T ss_pred cCCHHHHHHhhceechh--------hcCHHHHH-HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCc
Confidence 45678889999999882 12888655 6799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCc
Q psy7810 88 QFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQ 166 (478)
Q Consensus 88 qfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~ 166 (478)
||||+++|||++||++++++|+++||+++|+++..++...+ .++++++|+||+|+||.++|.++|++|+
T Consensus 81 Q~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~---------- 150 (390)
T PRK07411 81 QVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACV---------- 150 (390)
T ss_pred CcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHH----------
Confidence 99999999999999999999999999999999999888654 6889999999999999999999999998
Q ss_pred ccCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCC
Q psy7810 167 VDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLP 246 (478)
Q Consensus 167 ~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~ 246 (478)
+.++|+|.+++.|+.|++.++.|+.++||+|.++..|+....|.|
T Consensus 151 ---~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c-------------------------------- 195 (390)
T PRK07411 151 ---LLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSC-------------------------------- 195 (390)
T ss_pred ---HcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCC--------------------------------
Confidence 578999999999999999998888899999987532222112222
Q ss_pred CCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHH
Q psy7810 247 EHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNA 326 (478)
Q Consensus 247 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnA 326 (478)
. ..+.+.|+.+
T Consensus 196 -------------~--------------------------------------------------------~~gvlg~~~~ 206 (390)
T PRK07411 196 -------------A--------------------------------------------------------EGGVLGILPG 206 (390)
T ss_pred -------------c--------------------------------------------------------cCCcCcchHH
Confidence 1 0134578999
Q ss_pred HHHHHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCCccCCC
Q psy7810 327 VIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACGP 377 (478)
Q Consensus 327 ivagl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~vC~~ 377 (478)
+||+++|+||+|+|+|.++++.+.+++.+.....+..+.+.++|+|++|..
T Consensus 207 ~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~c~~i~~ 257 (390)
T PRK07411 207 IIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPERPVIEK 257 (390)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCCCCcccc
Confidence 999999999999999998888876654444455667788899999999873
No 11
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=4.6e-46 Score=362.08 Aligned_cols=239 Identities=23% Similarity=0.374 Sum_probs=206.3
Q ss_pred CCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 9 SPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 9 ~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
.++++.+||+||+++. .||.+.|+ +|++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.|||+||
T Consensus 5 l~~~~~~rY~Rqi~l~--------~~g~~~Q~-~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq 75 (245)
T PRK05690 5 LSDEEMLRYNRQIILR--------GFDFDGQE-KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQ 75 (245)
T ss_pred CCHHHHHHHHHhccch--------hcCHHHHH-HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhh
Confidence 4667789999999873 23888755 67999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcc
Q psy7810 89 FLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 89 fl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 167 (478)
|||+++|||++|+++++++|+++||+++|+++...+++.+ .++++++|+||+|+|+.++|.++|+.|+
T Consensus 76 ~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~----------- 144 (245)
T PRK05690 76 VLHDDATIGQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACF----------- 144 (245)
T ss_pred hcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHH-----------
Confidence 9999999999999999999999999999999999887654 6789999999999999999999999998
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCC-CccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGM-TACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLP 246 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~-t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~ 246 (478)
++++|+|.+++.|+.|++.++.|+. ++||+|.....+... ..
T Consensus 145 --~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~~~~~~--------------~~--------------------- 187 (245)
T PRK05690 145 --AAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGENA--------------LT--------------------- 187 (245)
T ss_pred --HhCCEEEEeeeccCCceEEEEecCCCCceeeeccCCCCCCC--------------CC---------------------
Confidence 5689999999999999999998875 799999864322110 00
Q ss_pred CCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHH
Q psy7810 247 EHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNA 326 (478)
Q Consensus 247 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnA 326 (478)
|. -.+.++|+++
T Consensus 188 ------------~~--------------------------------------------------------~~gv~~~~~~ 199 (245)
T PRK05690 188 ------------CV--------------------------------------------------------EAGVMAPLVG 199 (245)
T ss_pred ------------cc--------------------------------------------------------cCCccchHHH
Confidence 10 1245689999
Q ss_pred HHHHHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCC
Q psy7810 327 VIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNC 372 (478)
Q Consensus 327 ivagl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C 372 (478)
++|+++|+|++|+|+|.++++.+.++..+.....+..+..+++|+|
T Consensus 200 ~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~~~~~C 245 (245)
T PRK05690 200 VIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLKRDPGC 245 (245)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcCCCcCC
Confidence 9999999999999999998888776655555566678889999998
No 12
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=6.1e-46 Score=376.36 Aligned_cols=239 Identities=23% Similarity=0.386 Sum_probs=205.0
Q ss_pred hhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCC
Q psy7810 13 MARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFR 92 (478)
Q Consensus 13 ~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~ 92 (478)
|.+||+||++++ .+|.+.|+ +|++++|+|||+||+|+++|++|+++|||+|+|+|.|.||.|||+||+||+
T Consensus 1 ~~~rY~Rq~~~~--------~~G~~~Q~-~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~ 71 (338)
T PRK12475 1 MQERYSRQILFS--------GIGEEGQR-KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYT 71 (338)
T ss_pred Ccchhhhhhchh--------hcCHHHHH-hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCcccccc
Confidence 578999999985 34888755 679999999999999999999999999999999999999999999999999
Q ss_pred CCccC--chHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccC
Q psy7810 93 QKDIG--SSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQ 169 (478)
Q Consensus 93 ~~diG--~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~ 169 (478)
++|+| ++||++++++++++||+++|+++..++...+ .++++++|+||+|+||+++|.++|++|+
T Consensus 72 ~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~------------- 138 (338)
T PRK12475 72 EEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ------------- 138 (338)
T ss_pred HHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH-------------
Confidence 99985 8999999999999999999999988876444 6788999999999999999999999998
Q ss_pred CCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCC
Q psy7810 170 STIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHC 249 (478)
Q Consensus 170 ~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~ 249 (478)
+.++|+|.+++.|+.|++.++.|+.++||+|..+..|... +.
T Consensus 139 ~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~~--~~------------------------------------ 180 (338)
T PRK12475 139 KYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVGG--AT------------------------------------ 180 (338)
T ss_pred HcCCCEEEEEecccEEEEEEECCCCCCCHHHhcCCCCCCC--CC------------------------------------
Confidence 5789999999999999999999999999999875322110 00
Q ss_pred CCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHH
Q psy7810 250 DLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIA 329 (478)
Q Consensus 250 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAiva 329 (478)
| ...+.++|+++++|
T Consensus 181 ---------c--------------------------------------------------------~~~Gvl~p~v~~ia 195 (338)
T PRK12475 181 ---------C--------------------------------------------------------DTAGIIQPAVQIVV 195 (338)
T ss_pred ---------C--------------------------------------------------------ccCCcCchHHHHHH
Confidence 0 11234578889999
Q ss_pred HHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccc--cCCCCccCC
Q psy7810 330 ATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAE--RKSNCLACG 376 (478)
Q Consensus 330 gl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~--~~~~C~vC~ 376 (478)
++++.|++|+|+|..+++.+.++..+.+...+..+... ++|+|++|+
T Consensus 196 slqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~~k~p~Cp~Cg 244 (338)
T PRK12475 196 AYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNKQKKDTCPSCG 244 (338)
T ss_pred HHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEeccCCCCCCCcCC
Confidence 99999999999999888887776555556555566664 499999999
No 13
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=3.3e-45 Score=374.99 Aligned_cols=268 Identities=25% Similarity=0.334 Sum_probs=222.3
Q ss_pred CCCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcc
Q psy7810 8 SSPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNR 87 (478)
Q Consensus 8 ~~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~r 87 (478)
+.++++..||+||.++- .||.+.|+ +|++++|+|||+||+|++++++|+++|||+|+|+|.|.|++|||+|
T Consensus 13 ~~~~~e~~ry~Rqi~l~--------~~g~~~q~-~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~R 83 (370)
T PRK05600 13 QLPTSELRRTARQLALP--------GFGIEQQE-RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHR 83 (370)
T ss_pred CCCHHHHHHhhcccchh--------hhCHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccc
Confidence 46778899999999992 12888755 6799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCc
Q psy7810 88 QFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQ 166 (478)
Q Consensus 88 qfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~ 166 (478)
||||+++|||++||++++++++++||+++|+++...+...+ .++++++|+||+|+||+++|.++|++|+
T Consensus 84 Q~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~---------- 153 (370)
T PRK05600 84 QILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE---------- 153 (370)
T ss_pred cccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH----------
Confidence 99999999999999999999999999999999999988655 6789999999999999999999999998
Q ss_pred ccCCCceeEEEeeeeceeceEEEEcCCC---CccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCC
Q psy7810 167 VDQSTIIPMVDGGTEGFKGNARVILPGM---TACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTP 243 (478)
Q Consensus 167 ~~~~~~ip~i~~g~~G~~G~v~~~~p~~---t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~ 243 (478)
+.++|+|.+++.|+.|++.++.|+. ++||+|.++..++....|.|
T Consensus 154 ---~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c----------------------------- 201 (370)
T PRK05600 154 ---ITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDC----------------------------- 201 (370)
T ss_pred ---HcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCC-----------------------------
Confidence 5689999999999999999887653 68999987532221111111
Q ss_pred CCCCCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhccccccccc
Q psy7810 244 RLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVAS 323 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~ 323 (478)
...+.++|
T Consensus 202 ------------------------------------------------------------------------~~~gvlg~ 209 (370)
T PRK05600 202 ------------------------------------------------------------------------ATAGVLGA 209 (370)
T ss_pred ------------------------------------------------------------------------ccCCcchh
Confidence 11245689
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCCccCCCCCCCeEEEEcCCCCcHHHHHHHHhc
Q psy7810 324 TNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACGPANQPKYLDIESLDMKLSELIELLCQ 402 (478)
Q Consensus 324 tnAivagl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~vC~~~~~~~~~~~~~~~~Tl~~li~~l~~ 402 (478)
+.++||+++|+|++|+|+|.++++.+.++..+.....+..+.+.++|+|++|.. ..+.+. ...+|..++.+.+.+
T Consensus 210 ~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~~~~~~~c~~~~~-~~~~~~---~~~~~~~el~~~l~~ 284 (370)
T PRK05600 210 TTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRVGADPARPLVTR-LRPSYE---AARTDTTSLIDATLN 284 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEEecCCCCCCcccc-ccCcch---hcccCHHHHHHHHhc
Confidence 999999999999999999998888876554444455667888999999999983 111211 123578888887754
No 14
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.3e-45 Score=375.33 Aligned_cols=241 Identities=25% Similarity=0.279 Sum_probs=209.5
Q ss_pred CchhhhhHHHHHh--hcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 11 GNMARKWNHLRKV--LERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 11 ~~~~~r~~~~~~l--~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
+.+.+||+||.++ | |.++|+ +|++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.|||+||
T Consensus 3 ~~~~~rY~Rq~~l~~~----------g~~~q~-~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq 71 (355)
T PRK05597 3 NLDIARYRRQIMLGEI----------GQQGQQ-SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQ 71 (355)
T ss_pred hHHHhHhhheechhhc----------CHHHHH-HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccC
Confidence 5678999999999 6 888765 67999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcc
Q psy7810 89 FLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 89 fl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 167 (478)
|||+++|+|++||++++++|+++||+++|+++..++...+ .++++++|+||+|+||+++|.++|++|+
T Consensus 72 ~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~----------- 140 (355)
T PRK05597 72 VIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAA----------- 140 (355)
T ss_pred cccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-----------
Confidence 9999999999999999999999999999999998887654 6789999999999999999999999998
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPE 247 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~ 247 (478)
+.++|+|.+++.|+.|++.++.|+.++||+|.++..|+....|.|.
T Consensus 141 --~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~-------------------------------- 186 (355)
T PRK05597 141 --RLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCS-------------------------------- 186 (355)
T ss_pred --HcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCcc--------------------------------
Confidence 5789999999999999999999999999999875433222222221
Q ss_pred CCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHH
Q psy7810 248 HCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAV 327 (478)
Q Consensus 248 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAi 327 (478)
..+.++|+.++
T Consensus 187 ---------------------------------------------------------------------~~gv~g~~~~~ 197 (355)
T PRK05597 187 ---------------------------------------------------------------------QAGVLGPVVGV 197 (355)
T ss_pred ---------------------------------------------------------------------ccCcchhHHHH
Confidence 12456899999
Q ss_pred HHHHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCCccCC
Q psy7810 328 IAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACG 376 (478)
Q Consensus 328 vagl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~vC~ 376 (478)
||+++|+|++|+|+|.++++.+.++..+.....+..+.+.++|+|..+.
T Consensus 198 ~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 246 (355)
T PRK05597 198 VGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVVGNPAVLERV 246 (355)
T ss_pred HHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEeccCCCCCcccc
Confidence 9999999999999999888887766444545667778888999985433
No 15
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.2e-44 Score=367.06 Aligned_cols=239 Identities=25% Similarity=0.354 Sum_probs=203.3
Q ss_pred hhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCC
Q psy7810 13 MARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFR 92 (478)
Q Consensus 13 ~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~ 92 (478)
|++||+||+++. .+|.++|+ +|++++|+|||+||+||++|++|+++|||+|+|+|.|.|+.+||+||+||+
T Consensus 1 ~~~rY~Rq~~l~--------~~G~~~Q~-~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~ 71 (339)
T PRK07688 1 MNERYSRQELFS--------PIGEEGQQ-KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYT 71 (339)
T ss_pred Ccchhhhhhchh--------hcCHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCcccccc
Confidence 678999999873 23888755 679999999999999999999999999999999999999999999999999
Q ss_pred CCcc--CchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccC
Q psy7810 93 QKDI--GSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQ 169 (478)
Q Consensus 93 ~~di--G~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~ 169 (478)
++|+ |++|+++++++++++||.++|+++..++...+ .++++++|+||+|+||+++|.++|+.|+
T Consensus 72 ~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~------------- 138 (339)
T PRK07688 72 ESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ------------- 138 (339)
T ss_pred HHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH-------------
Confidence 9999 46999999999999999999999998887655 6789999999999999999999999998
Q ss_pred CCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCC
Q psy7810 170 STIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHC 249 (478)
Q Consensus 170 ~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~ 249 (478)
+.++|+|.+++.|+.|++.++.|+.++||+|..+..|... +.
T Consensus 139 ~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~~--~~------------------------------------ 180 (339)
T PRK07688 139 KYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQSIPLGG--AT------------------------------------ 180 (339)
T ss_pred HhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecCCCCCCC--CC------------------------------------
Confidence 5689999999999999999999999999999875332210 11
Q ss_pred CCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHH
Q psy7810 250 DLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIA 329 (478)
Q Consensus 250 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAiva 329 (478)
|- ..+.++|+++++|
T Consensus 181 ---------c~--------------------------------------------------------~~gv~~p~~~~i~ 195 (339)
T PRK07688 181 ---------CD--------------------------------------------------------TAGIISPAVQIVA 195 (339)
T ss_pred ---------Cc--------------------------------------------------------cCCcccHHHHHHH
Confidence 10 0134588999999
Q ss_pred HHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeec--cccCCCCccCC
Q psy7810 330 ATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYE--AERKSNCLACG 376 (478)
Q Consensus 330 gl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~--~~~~~~C~vC~ 376 (478)
+++|+|++|+|+|.++++.+.++..+.....+..+. ..++|+|++|+
T Consensus 196 ~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~Cp~Cg 244 (339)
T PRK07688 196 SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNCPSCG 244 (339)
T ss_pred HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCCCCCC
Confidence 999999999999998888877654444444444444 34689999999
No 16
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=1.3e-44 Score=374.64 Aligned_cols=244 Identities=25% Similarity=0.329 Sum_probs=205.9
Q ss_pred CCCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcc
Q psy7810 8 SSPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNR 87 (478)
Q Consensus 8 ~~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~r 87 (478)
..+.++.+||+||..+- .+|.++|+ +|++++|+|||+||+||++|++|+++|||+|+|+|+|.|+.+||+|
T Consensus 14 ~l~~~~~~ry~Rq~~l~--------~~g~~~q~-~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~R 84 (392)
T PRK07878 14 ELTRDEVARYSRHLIIP--------DVGVDGQK-RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQR 84 (392)
T ss_pred CCCHHHHHHhhheechh--------hcCHHHHH-HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccccc
Confidence 56778889999999871 22888755 6799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCc
Q psy7810 88 QFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQ 166 (478)
Q Consensus 88 qfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~ 166 (478)
||||+++|||++||++++++|+++||+++|+++..++...+ .++++++|+||+|+||+++|.++|++|+
T Consensus 85 q~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~---------- 154 (392)
T PRK07878 85 QVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAV---------- 154 (392)
T ss_pred ccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHH----------
Confidence 99999999999999999999999999999999998887654 6789999999999999999999999998
Q ss_pred ccCCCceeEEEeeeeceeceEEEEcC----CCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCC
Q psy7810 167 VDQSTIIPMVDGGTEGFKGNARVILP----GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIAST 242 (478)
Q Consensus 167 ~~~~~~ip~i~~g~~G~~G~v~~~~p----~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~ 242 (478)
..++|+|.+++.|+.|+++++.+ +.++||+|.+...+.....|.|
T Consensus 155 ---~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~---------------------------- 203 (392)
T PRK07878 155 ---LAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSC---------------------------- 203 (392)
T ss_pred ---HcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCC----------------------------
Confidence 56899999999999999998874 3689999986422211111111
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccc
Q psy7810 243 PRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVA 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia 322 (478)
. -.+.++
T Consensus 204 -----------------~--------------------------------------------------------~~gv~g 210 (392)
T PRK07878 204 -----------------A--------------------------------------------------------EGGVLG 210 (392)
T ss_pred -----------------c--------------------------------------------------------cCCccc
Confidence 1 013468
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCCcc
Q psy7810 323 STNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLA 374 (478)
Q Consensus 323 ~tnAivagl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~v 374 (478)
|+.+++|+++|+|++|+|+|.++++.+.++..+.....+..+.++++|+|+.
T Consensus 211 ~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~~~~~~C~~ 262 (392)
T PRK07878 211 VLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRKDPSTPK 262 (392)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEeeccCCCCCc
Confidence 9999999999999999999998888776554434445566688899999973
No 17
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.5e-44 Score=351.27 Aligned_cols=169 Identities=24% Similarity=0.307 Sum_probs=158.1
Q ss_pred CchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccC
Q psy7810 11 GNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFL 90 (478)
Q Consensus 11 ~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl 90 (478)
-+..+||.||..++ |.++|+ +|++++|+||||||+||+++++|+++|||+|+|+|+|.||+|||+|||+
T Consensus 4 ~~~~~~ysRq~~~i----------G~e~Q~-kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l 72 (287)
T PRK08223 4 FDYDEAFCRNLGWI----------TPTEQQ-RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAG 72 (287)
T ss_pred ccHHHHHhhhhhhc----------CHHHHH-HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccC
Confidence 35678999998888 888766 5699999999999999999999999999999999999999999999999
Q ss_pred CCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcH--HHHHHHHHHHHHhhhccccCcc
Q psy7810 91 FRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSI--VARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 91 ~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~--~~r~~in~~~~~l~~~~~~~~~ 167 (478)
|+.+|||++||++++++++++||+++|+++...+++.+ .++++++|+||+|+||+ ++|.++|+.|+
T Consensus 73 ~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~----------- 141 (287)
T PRK08223 73 AMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQ----------- 141 (287)
T ss_pred cChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH-----------
Confidence 99999999999999999999999999999999998766 78999999999999986 89999999998
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCCCccccccCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDL 204 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~ 204 (478)
..++|+|.+++.|+.|++.++.|+ ++||+|.++.
T Consensus 142 --~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~~ 175 (287)
T PRK08223 142 --QRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFDL 175 (287)
T ss_pred --HcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcCC
Confidence 578999999999999999999885 7999999865
No 18
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=8.1e-45 Score=357.61 Aligned_cols=277 Identities=22% Similarity=0.288 Sum_probs=212.0
Q ss_pred hhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCc
Q psy7810 16 KWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKD 95 (478)
Q Consensus 16 r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~d 95 (478)
.|+||+++| |.++|+ +|++++|||+|+||+|+|+||||+++|||+|+|+|.|.|+.+||+|||||+++|
T Consensus 1 lYsRQl~~~----------G~eaq~-kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~d 69 (286)
T cd01491 1 LYSRQLYVL----------GHEAMK-KLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREED 69 (286)
T ss_pred Ccccceecc----------CHHHHH-HHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHH
Confidence 488999988 889877 569999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeE
Q psy7810 96 IGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPM 175 (478)
Q Consensus 96 iG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~ 175 (478)
||++||++++++|+++||+++|+++... .+.+++++||+||+|.|+.+++.++|++|+ +.++|+
T Consensus 70 IGk~Kaea~~~~L~eLNp~V~V~~~~~~---~~~~~l~~fdvVV~~~~~~~~~~~in~~c~-------------~~~ipf 133 (286)
T cd01491 70 IGKNRAEASQARLAELNPYVPVTVSTGP---LTTDELLKFQVVVLTDASLEDQLKINEFCH-------------SPGIKF 133 (286)
T ss_pred hCHHHHHHHHHHHHHHCCCCEEEEEecc---CCHHHHhcCCEEEEecCCHHHHHHHHHHHH-------------HcCCEE
Confidence 9999999999999999999999999876 345789999999999999999999999998 578999
Q ss_pred EEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhcccccccc--CC-CCCCCCCCCC
Q psy7810 176 VDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIA--ST-PRLPEHCDLP 252 (478)
Q Consensus 176 i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~--~~-~~~~~~~~~~ 252 (478)
|.+++.|+.|+++++++ +||.|.-...+++++++.|+|.+.+....+|+.=.++-++..... +. ..+++..+..
T Consensus 134 I~a~~~G~~G~vf~dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~ 210 (286)
T cd01491 134 ISADTRGLFGSIFCDFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCE 210 (286)
T ss_pred EEEeccccEEEEEecCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCc
Confidence 99999999999999766 455554333345678899999887776677765555544433221 11 1122111111
Q ss_pred CCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcc---chhhhhhhhcccccccccHHHHHH
Q psy7810 253 PRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGV---TYRLVQGVIKNIIPAVASTNAVIA 329 (478)
Q Consensus 253 ~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~---~~~~~k~ia~~iiPaia~tnAiva 329 (478)
+.... ...|. + |.|... +...--|++..+- ++|++|++|
T Consensus 211 ~~~v~------------~~~~~--~----------------------f~i~d~~~~~~y~~gG~~~qvK--~~~~~~~~g 252 (286)
T cd01491 211 PRKIK------------VKGPY--T----------------------FSIGDTSSFSEYIRGGIVTQVK--LSPMAAFFG 252 (286)
T ss_pred cEEEE------------ECCCC--e----------------------EEECcCcCcCccccCcEEEEEe--cccHHHHhh
Confidence 10000 00000 1 111100 0011123433333 899999999
Q ss_pred HHHHHHHHHHhcCCCCCccceEEEeeCCCce
Q psy7810 330 ATCATEVFKLATGCATSLNNYMVFNDVAGIY 360 (478)
Q Consensus 330 gl~~~EalK~l~~~~~pl~n~~~~~~~~g~~ 360 (478)
|++|||++|.++++..|+.+|++||..+.++
T Consensus 253 ~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~ 283 (286)
T cd01491 253 GLAAQEVLKACSGKFTPLKQWLYFDALECLP 283 (286)
T ss_pred hHHHHHHHHHcCCCCCceeeEEEecHHHhcC
Confidence 9999999999999999999999999886543
No 19
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2e-43 Score=340.74 Aligned_cols=170 Identities=25% Similarity=0.384 Sum_probs=158.4
Q ss_pred CCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcccc
Q psy7810 10 PGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89 (478)
Q Consensus 10 ~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqf 89 (478)
++++.+||+||+++| |.+.|+ +|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.|||+|||
T Consensus 3 ~~~~~~ry~Rq~~~~----------g~~~q~-~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~ 71 (231)
T PRK08328 3 SERELERYDRQIMIF----------GVEGQE-KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQI 71 (231)
T ss_pred CHHHHHHHhhHHHhc----------CHHHHH-HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhcccc
Confidence 567789999999998 788655 679999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCc-hHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcc
Q psy7810 90 LFRQKDIGS-SKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 90 l~~~~diG~-~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 167 (478)
+|.++|+|+ +|+++++++++++||+++|+++...+.+.+ .++++++|+||+|+|+.++|.++|+.|+
T Consensus 72 l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~----------- 140 (231)
T PRK08328 72 LHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAH----------- 140 (231)
T ss_pred ccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHH-----------
Confidence 999999999 699999999999999999999998886554 5789999999999999999999999998
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCCCccccccCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLD 203 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~ 203 (478)
+.++|+|++++.|+.|++.++.|+.|+||+|.++
T Consensus 141 --~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~ 174 (231)
T PRK08328 141 --KKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFP 174 (231)
T ss_pred --HcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCC
Confidence 5789999999999999999999999999999763
No 20
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=3.6e-43 Score=338.94 Aligned_cols=164 Identities=27% Similarity=0.503 Sum_probs=154.2
Q ss_pred hhHHHHHh--hcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCC
Q psy7810 16 KWNHLRKV--LERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQ 93 (478)
Q Consensus 16 r~~~~~~l--~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~ 93 (478)
||+||.++ | |.+.|+ +|++++|+|||+||+||++|++|+++|||+|+|+|+|.|+++||+|||||.+
T Consensus 1 rY~Rq~~l~~~----------g~~~q~-~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~ 69 (228)
T cd00757 1 RYSRQILLPEI----------GEEGQE-KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTE 69 (228)
T ss_pred Ccceeechhhc----------CHHHHH-HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccCh
Confidence 89999999 8 888755 6799999999999999999999999999999999999999999999999999
Q ss_pred CccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCc
Q psy7810 94 KDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTI 172 (478)
Q Consensus 94 ~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ 172 (478)
+|+|++||++++++++++||+++|+.+...+...+ .++++++|+||+|+|+.++|.++|+.|+ +.+
T Consensus 70 ~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~-------------~~~ 136 (228)
T cd00757 70 ADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACV-------------KLG 136 (228)
T ss_pred hhCCChHHHHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHH-------------HcC
Confidence 99999999999999999999999999998886544 6788999999999999999999999998 568
Q ss_pred eeEEEeeeeceeceEEEEcCCCCccccccCC
Q psy7810 173 IPMVDGGTEGFKGNARVILPGMTACIDCTLD 203 (478)
Q Consensus 173 ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~ 203 (478)
+|+|++|+.|+.|++.++.|+.++|+.|...
T Consensus 137 ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~ 167 (228)
T cd00757 137 KPLVSGAVLGFEGQVTVFIPGEGPCYRCLFP 167 (228)
T ss_pred CCEEEEEeccCEEEEEEECCCCCCCccccCC
Confidence 9999999999999999999999999999875
No 21
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=5.5e-43 Score=361.30 Aligned_cols=244 Identities=24% Similarity=0.389 Sum_probs=207.0
Q ss_pred CCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 9 SPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 9 ~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
.+..+.+||+||++|- .+|.+.|. +|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||
T Consensus 108 ~s~~~~~~y~r~i~l~--------~~g~~~q~-~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq 178 (376)
T PRK08762 108 LTDEQDERYSRHLRLP--------EVGEEGQR-RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQ 178 (376)
T ss_pred CCHHHHHHHHHhcchh--------hcCHHHHH-HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccc
Confidence 3446678999998872 12788655 67999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcc
Q psy7810 89 FLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 89 fl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 167 (478)
|||+++|||++||++++++++++||.++|+.+...+.+.+ .++++++|+||+|+|+.++|.++|++|+
T Consensus 179 ~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~----------- 247 (376)
T PRK08762 179 ILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACV----------- 247 (376)
T ss_pred cccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-----------
Confidence 9999999999999999999999999999999988877654 5688999999999999999999999998
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCC----CccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGM----TACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTP 243 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~----t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~ 243 (478)
+.++|+|.+++.|+.|++.++.|+. ++||+|.+...+.....|.|
T Consensus 248 --~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~----------------------------- 296 (376)
T PRK08762 248 --KLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSC----------------------------- 296 (376)
T ss_pred --HcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCC-----------------------------
Confidence 5789999999999999999998876 89999986432211111111
Q ss_pred CCCCCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhccccccccc
Q psy7810 244 RLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVAS 323 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~ 323 (478)
. ..+.++|
T Consensus 297 ----------------~--------------------------------------------------------~~gv~g~ 304 (376)
T PRK08762 297 ----------------A--------------------------------------------------------EAGVLGV 304 (376)
T ss_pred ----------------c--------------------------------------------------------cCCcchh
Confidence 0 1134588
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccceEE-EeeCCCceEEeeccccCCCCccCC
Q psy7810 324 TNAVIAATCATEVFKLATGCATSLNNYMV-FNDVAGIYTYTYEAERKSNCLACG 376 (478)
Q Consensus 324 tnAivagl~~~EalK~l~~~~~pl~n~~~-~~~~~g~~~~~~~~~~~~~C~vC~ 376 (478)
+++++|+++|+|++|+|+|.+.++.+.++ ||.. ...+..+.+.++|+|++|+
T Consensus 305 ~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~C~~C~ 357 (376)
T PRK08762 305 LPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDAL-AMRFRELRLPPDPHCPVCA 357 (376)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECC-CCeEEEEeccCCCCCCCCC
Confidence 99999999999999999999888876655 5544 4557778899999999999
No 22
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=9e-43 Score=329.86 Aligned_cols=164 Identities=28% Similarity=0.454 Sum_probs=154.2
Q ss_pred hhHHHHHh--hcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCC
Q psy7810 16 KWNHLRKV--LERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQ 93 (478)
Q Consensus 16 r~~~~~~l--~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~ 93 (478)
||+||+++ | |.++|+ +|++++|+|||+||+|++++++|+++|+++|+|+|.|.|+++||+|||||++
T Consensus 1 rY~Rqi~l~~~----------g~~~q~-kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~ 69 (202)
T TIGR02356 1 RYARQLLLPDI----------GEEGQQ-RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTE 69 (202)
T ss_pred CCcceecchhc----------CHHHHH-HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccCh
Confidence 89999998 6 888755 6799999999999999999999999999999999999999999999999999
Q ss_pred CccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCc
Q psy7810 94 KDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTI 172 (478)
Q Consensus 94 ~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ 172 (478)
+|+|++||++++++++++||+++++.+...+.+.+ .++++++|+||+|+|+.++|.++|+.|+ +.+
T Consensus 70 ~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~-------------~~~ 136 (202)
T TIGR02356 70 EDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACV-------------ALG 136 (202)
T ss_pred hhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcC
Confidence 99999999999999999999999999998887654 6789999999999999999999999998 578
Q ss_pred eeEEEeeeeceeceEEEEcCC-CCccccccCC
Q psy7810 173 IPMVDGGTEGFKGNARVILPG-MTACIDCTLD 203 (478)
Q Consensus 173 ip~i~~g~~G~~G~v~~~~p~-~t~c~~c~~~ 203 (478)
+|+|++++.|+.|++.++.|+ .++||+|.+.
T Consensus 137 ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~ 168 (202)
T TIGR02356 137 TPLISAAVVGFGGQLMVFDPGGEGPCLRCLFP 168 (202)
T ss_pred CCEEEEEeccCeEEEEEEeCCCCCCChhhcCC
Confidence 999999999999999999988 7999999874
No 23
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.3e-41 Score=320.30 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=143.4
Q ss_pred hhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCC
Q psy7810 15 RKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQK 94 (478)
Q Consensus 15 ~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~ 94 (478)
+||+||+++| |.+.|+ +|++++|+|+|+||+|||++|||+++|||+|+|+|+|.|+.+||+|||||+++
T Consensus 2 ~~Y~Rqi~l~----------G~e~Q~-~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~ 70 (197)
T cd01492 2 ALYDRQIRLW----------GLEAQK-RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAE 70 (197)
T ss_pred chhhHHHHHh----------CHHHHH-HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHH
Confidence 6999999999 788655 67999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCcee
Q psy7810 95 DIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIP 174 (478)
Q Consensus 95 diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip 174 (478)
|+|++||++++++|+++||+++|+++...+.+...+++++||+||+|.|+.++|.++|+.|+ +.++|
T Consensus 71 diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~-------------~~~ip 137 (197)
T cd01492 71 DLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCR-------------KLGVK 137 (197)
T ss_pred HcCchHHHHHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCCC
Confidence 99999999999999999999999999988886678899999999999999999999999998 57899
Q ss_pred EEEeeeeceeceEEE
Q psy7810 175 MVDGGTEGFKGNARV 189 (478)
Q Consensus 175 ~i~~g~~G~~G~v~~ 189 (478)
+|.+++.|+.|+++.
T Consensus 138 ~i~~~~~G~~G~v~~ 152 (197)
T cd01492 138 FYATGVHGLFGFVFA 152 (197)
T ss_pred EEEEEecCCEEEEEE
Confidence 999999999999874
No 24
>KOG2014|consensus
Probab=100.00 E-value=1.4e-41 Score=324.96 Aligned_cols=313 Identities=20% Similarity=0.235 Sum_probs=223.7
Q ss_pred CCCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcc
Q psy7810 8 SSPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNR 87 (478)
Q Consensus 8 ~~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~r 87 (478)
-.++++.+-||||+||| |.++|+ +|+++||||+|++|+|+|++|||+++|||++|++|+-.|...+++.
T Consensus 5 else~E~alYDRQIRLW----------G~~AQ~-~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~ 73 (331)
T KOG2014|consen 5 ELSEQEIALYDRQIRLW----------GLEAQR-RLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGA 73 (331)
T ss_pred hhhHHHHHHHHHHHHHc----------cHHHHH-hhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCc
Confidence 45678899999999999 889855 6799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcc
Q psy7810 88 QFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 88 qfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 167 (478)
|||++.+++|+.||++..++++.+||.|+|.....++++.+.+||.+||+||..--+.+++..+|..|+
T Consensus 74 qFli~~~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icr----------- 142 (331)
T KOG2014|consen 74 QFLISASSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICR----------- 142 (331)
T ss_pred eeEEchhhhchHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccc--cCCCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTI--ASTPRL 245 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~--~~~~~~ 245 (478)
+.+++|+.+++.|+.|+++..+.+|..-.+-.....+.+ +.....-+..-+|.+..+.+..+ .-+..|
T Consensus 143 --k~~i~F~a~d~~g~~Gy~F~dL~~h~y~~~~~~~~~~~~--------~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~ 212 (331)
T KOG2014|consen 143 --KLNIAFYAGDCFGLCGYAFADLQEHKYLEEKTKVAKVSQ--------TKRAKVDETETEWVKRKVVFPSVKEALSVDW 212 (331)
T ss_pred --hcCceEEeccccceeeeeeeehhhhhhhhhccccccccc--------ccceeeeeccceehhhhhcccCHHHHHhccc
Confidence 457999999999999999999887643322111111111 00111112223455554333322 112222
Q ss_pred CCCCCCCCC-CchhhHHHHHHh-hhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcC-CCccchhhhhhhhcccccccc
Q psy7810 246 PEHCDLPPR-LPEHCIEYVKVI-QWSKENPFDCPIDGDDPNHINWIYEKASERASQFN-IVGVTYRLVQGVIKNIIPAVA 322 (478)
Q Consensus 246 ~~~~~~~~~-~~~~c~~~~~~~-~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~-I~~~~~~~~k~ia~~iiPaia 322 (478)
..+..+.++ ..+.-..+...+ +...+. -|++ +-+.+.+-.....+.+... +..+..... .....+.+.++
T Consensus 213 ~~k~k~~~rr~~~~~~ll~v~l~f~~s~~-----r~pg-~~~~~d~erl~~I~~ell~s~~i~pd~~~-~f~~~~~~ef~ 285 (331)
T KOG2014|consen 213 TKKEKRKPRRTKKLYFLLPVLLKFRTSEG-----RDPG-ETSEEDLERLLQIRNELLESETIIPDELL-EFLSLIFTEFA 285 (331)
T ss_pred chhhhhhhhccCcceehHHHHHHHHHhcC-----CCCc-cccHHHHHHHHHHHHhhccccccCCchHH-HHHHhcccccC
Confidence 111111111 111111111111 111111 1112 1122222222333333333 222222333 66788899999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCccceEEEeeCCCc
Q psy7810 323 STNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGI 359 (478)
Q Consensus 323 ~tnAivagl~~~EalK~l~~~~~pl~n~~~~~~~~g~ 359 (478)
|++|||||+++||+||+++++.+|++||++|++.+|.
T Consensus 286 Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 286 PVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred chhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 9999999999999999999999999999999999875
No 25
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=4.1e-40 Score=370.63 Aligned_cols=319 Identities=19% Similarity=0.225 Sum_probs=235.1
Q ss_pred hhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCC
Q psy7810 13 MARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFR 92 (478)
Q Consensus 13 ~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~ 92 (478)
+.+||+||+++| |.++|+ +|++++|||||+||||+|+||||+++|||+|+|+|+|.|+.+||+||||++
T Consensus 3 d~~lYsRQi~l~----------G~eaq~-kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~ 71 (1008)
T TIGR01408 3 DEALYSRQLYVL----------GDEAMQ-KMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLS 71 (1008)
T ss_pred hHhhhhhHHHhc----------CHHHHH-HHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecc
Confidence 578999999999 889866 569999999999999999999999999999999999999999999999999
Q ss_pred CCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCc
Q psy7810 93 QKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTI 172 (478)
Q Consensus 93 ~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ 172 (478)
++|||++||++++++|+++||+|+|+++...+. .+++++||+||+|.++.+.+.++|++|+ +.+
T Consensus 72 ~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~t~~~~~~~~~in~~cr-------------~~~ 135 (1008)
T TIGR01408 72 EDDVGRNRAEAVVKKLAELNPYVHVSSSSVPFN---EEFLDKFQCVVLTEMSLPLQKEINDFCH-------------SQC 135 (1008)
T ss_pred hHHcCchHHHHHHHHHHHHCCCceEEEecccCC---HHHHcCCCEEEECCCCHHHHHHHHHHHH-------------HcC
Confidence 999999999999999999999999999987653 5699999999999999999999999998 467
Q ss_pred --eeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhc-----------------
Q psy7810 173 --IPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVT----------------- 233 (478)
Q Consensus 173 --ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~----------------- 233 (478)
+|||.+++.|+.|+++++++.+..|.+-... .|.......|+-. .|- ..+|+.-.++-
T Consensus 136 ~~I~fI~~~~~G~~G~vf~D~g~~f~~~d~~ge-~p~~~~i~~i~~~-~~g-~Vt~~~~~~h~l~~gd~V~f~ev~gm~~ 212 (1008)
T TIGR01408 136 PPIAFISADVRGLFGSLFCDFGDEFEVLDTDGE-EPKTGFIASITQA-NPG-IVTCLENHRHKLETGDFVTFREVNGMTG 212 (1008)
T ss_pred CCeEEEEEeecceEEEEEecCCCceEEEeCCCC-CCCcccccccccC-CCc-eEEeecCcccCCcCCCEEEEeecccccc
Confidence 9999999999999999987654334332111 1111111222100 000 00000000000
Q ss_pred ------------------------cccc---cccCCCCCCCCCCC-----------------CCCCchhhHHHHHHhhhc
Q psy7810 234 ------------------------YPLC---TIASTPRLPEHCDL-----------------PPRLPEHCIEYVKVIQWS 269 (478)
Q Consensus 234 ------------------------~~~~---~~~~~~~~~~~~~~-----------------~~~~~~~c~~~~~~~~~~ 269 (478)
|..+ .+..+.+.+....+ .+...+..+.++...++.
T Consensus 213 lN~~~~~~i~~~~~~~f~i~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~~ 292 (1008)
T TIGR01408 213 LNDGSPRKITVISPYSFSIGDTTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQ 292 (1008)
T ss_pred cCCCCceeEEecCCceEEeccccccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHHH
Confidence 0000 00111111211111 111122345555556666
Q ss_pred cCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCC--ccchhhhhhhhcccccccccHHHHHHHHHHHHHHHHhcCCCCCc
Q psy7810 270 KENPFDCPIDGDDPNHINWIYEKASERASQFNIV--GVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSL 347 (478)
Q Consensus 270 ~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~--~~~~~~~k~ia~~iiPaia~tnAivagl~~~EalK~l~~~~~pl 347 (478)
++..+|....+.+..+.+.+.+.++......+.+ .++...++.++...-..++|++|++||+++||++|.++|+..|+
T Consensus 293 f~~~~g~~P~~~~~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi 372 (1008)
T TIGR01408 293 FQEKYSRKPNVGCQQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPL 372 (1008)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCc
Confidence 6555554334556677777888888877777653 36778888888887789999999999999999999999999999
Q ss_pred cceEEEeeCCCceE
Q psy7810 348 NNYMVFNDVAGIYT 361 (478)
Q Consensus 348 ~n~~~~~~~~g~~~ 361 (478)
.+|++|+..++++.
T Consensus 373 ~q~~~~D~~e~l~~ 386 (1008)
T TIGR01408 373 CQWFYFDSAESLPS 386 (1008)
T ss_pred eeeEEeehhhhCCc
Confidence 99999998877653
No 26
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=6.8e-40 Score=321.26 Aligned_cols=246 Identities=31% Similarity=0.531 Sum_probs=208.0
Q ss_pred CCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 9 SPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 9 ~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
.++.+..||+||..+++- |.+. |++|+++||+|||+||+||+++++|+++|||+++|+|.|+|+++||+||
T Consensus 3 ~~~~~~~ry~Rqi~l~~~--------~~~~-q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq 73 (254)
T COG0476 3 LSDEEIERYSRQILLPGI--------GGEG-QQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQ 73 (254)
T ss_pred ccHHHHHhhcceeeeccc--------CHHH-HHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCce
Confidence 456779999999999943 6677 5567999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcc
Q psy7810 89 FLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 89 fl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 167 (478)
++|+++|+|++|++++++.++++||.+++.++...+...+ .++++++|+|++|+||+++|..+|+.|+
T Consensus 74 ~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~----------- 142 (254)
T COG0476 74 FLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACV----------- 142 (254)
T ss_pred eeecccccCCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHH-----------
Confidence 9999999999999999999999999999999999988766 5899999999999999999999999998
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCC-CCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPG-MTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLP 246 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~-~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~ 246 (478)
..++|++++++.|+.|+++++.|+ .++||+|..+..|+....+. -
T Consensus 143 --~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-----------~--------------------- 188 (254)
T COG0476 143 --KLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPT-----------S--------------------- 188 (254)
T ss_pred --HhCCCeEeeeeccceEEEEEEecCCCCCcccccCCCCCCcccccc-----------c---------------------
Confidence 457999999999999999999999 59999999875553221110 0
Q ss_pred CCCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHH
Q psy7810 247 EHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNA 326 (478)
Q Consensus 247 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnA 326 (478)
|-+ .+ -+.++..
T Consensus 189 ------------c~~-------------------------------------------------~g-------v~~~~~~ 200 (254)
T COG0476 189 ------------CDE-------------------------------------------------AG-------VLGPLVG 200 (254)
T ss_pred ------------ccc-------------------------------------------------CC-------ccccccc
Confidence 100 01 2356677
Q ss_pred HHHHHHHHHHHHHhcCCC-CCccce-EEEeeCCCceEEeeccccCCC-CccCC
Q psy7810 327 VIAATCATEVFKLATGCA-TSLNNY-MVFNDVAGIYTYTYEAERKSN-CLACG 376 (478)
Q Consensus 327 ivagl~~~EalK~l~~~~-~pl~n~-~~~~~~~g~~~~~~~~~~~~~-C~vC~ 376 (478)
+++.+++.|++|+++|.+ .++.+. +.++......+......+++. |++|+
T Consensus 201 ~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 253 (254)
T COG0476 201 VVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLKLRRRPISCPVCG 253 (254)
T ss_pred hhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhhcccCCCCCCcCC
Confidence 899999999999999998 666654 455555554666667777766 99997
No 27
>KOG2017|consensus
Probab=100.00 E-value=9.3e-41 Score=323.74 Aligned_cols=246 Identities=25% Similarity=0.416 Sum_probs=210.6
Q ss_pred CCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 9 SPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 9 ~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
.+.++..||.||.-+- .+|... |..|++++||||||||+||..+..|+.+|+|.|-|||.|.||.+||.||
T Consensus 39 Ls~dei~RYsRQlilp--------e~gV~G-Q~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQ 109 (427)
T KOG2017|consen 39 LSLDEILRYSRQLILP--------EFGVHG-QLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQ 109 (427)
T ss_pred CCHHHHHhhhheeecc--------cccccc-ccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHH
Confidence 3557889999998775 347775 5577999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcc
Q psy7810 89 FLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 89 fl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~ 167 (478)
.++++..+|+.||++|++.++++||+++|..|...+...+ .+.++++|+|+||+||+.+|+.|++.|+-
T Consensus 110 Vlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVl---------- 179 (427)
T KOG2017|consen 110 VLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVL---------- 179 (427)
T ss_pred HhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHH----------
Confidence 9999999999999999999999999999999999988766 78899999999999999999999999983
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPE 247 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~ 247 (478)
.++|++.+...++.||..++.-...+||+|.++..|++...-.
T Consensus 180 ---LgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~---------------------------------- 222 (427)
T KOG2017|consen 180 ---LGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTN---------------------------------- 222 (427)
T ss_pred ---cCCcccccccccccceeEEeecCCCceeeecCCCCcChHHhcc----------------------------------
Confidence 5899999999999999988876788999999865443221111
Q ss_pred CCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHH
Q psy7810 248 HCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAV 327 (478)
Q Consensus 248 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAi 327 (478)
|-+ -|+. .|+..+
T Consensus 223 -----------C~d-------------------------------------------------gGVl-------Gpv~Gv 235 (427)
T KOG2017|consen 223 -----------CAD-------------------------------------------------GGVL-------GPVTGV 235 (427)
T ss_pred -----------ccc-------------------------------------------------Ccee-------ecchhh
Confidence 211 1343 567788
Q ss_pred HHHHHHHHHHHHhcCCCCCccceE-EEeeCCCceEEeeccccCCCCccCCC
Q psy7810 328 IAATCATEVFKLATGCATSLNNYM-VFNDVAGIYTYTYEAERKSNCLACGP 377 (478)
Q Consensus 328 vagl~~~EalK~l~~~~~pl~n~~-~~~~~~g~~~~~~~~~~~~~C~vC~~ 377 (478)
||.|+|.|++|++.+..+++..++ .|++..+.......-.+.++|.+||+
T Consensus 236 iG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~irlR~r~~~C~~Cg~ 286 (427)
T KOG2017|consen 236 IGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRLRSRRPKCAVCGK 286 (427)
T ss_pred hhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEEeccCCCCCcccCC
Confidence 999999999999999999888765 58998884444444577999999995
No 28
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.7e-39 Score=306.38 Aligned_cols=150 Identities=24% Similarity=0.393 Sum_probs=139.9
Q ss_pred hhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCC--
Q psy7810 16 KWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQ-- 93 (478)
Q Consensus 16 r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~-- 93 (478)
||+||+++| |.++++ +|++++|+|||+||+|||++|||+++|||+|+|+|+|.|+.+||+|||||++
T Consensus 1 ~y~Rqi~l~----------G~~~q~-~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~ 69 (198)
T cd01485 1 LYDRQIRLW----------GDEAQN-KLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEV 69 (198)
T ss_pred Cccceeecc----------CHHHHH-HHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccch
Confidence 699999999 788755 6799999999999999999999999999999999999999999999999998
Q ss_pred CccCchHHHHHHHHHHhhCCCCeEEEEecccC---CCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCC
Q psy7810 94 KDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQ---DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQS 170 (478)
Q Consensus 94 ~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~---~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~ 170 (478)
+|+|++||++++++|+++||+++|+++...+. +...+++++||+||+|.|+.++|.++|+.|+ +
T Consensus 70 ~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~-------------~ 136 (198)
T cd01485 70 SNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCR-------------K 136 (198)
T ss_pred hhcCchHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------H
Confidence 89999999999999999999999999988774 3347899999999999999999999999998 5
Q ss_pred CceeEEEeeeeceeceEEE
Q psy7810 171 TIIPMVDGGTEGFKGNARV 189 (478)
Q Consensus 171 ~~ip~i~~g~~G~~G~v~~ 189 (478)
+++|+|.+++.|+.|++++
T Consensus 137 ~~ip~i~~~~~G~~G~v~~ 155 (198)
T cd01485 137 HHIPFISCATYGLIGYAFF 155 (198)
T ss_pred cCCCEEEEEeecCEEEEEE
Confidence 7899999999999999874
No 29
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=5.2e-37 Score=318.05 Aligned_cols=163 Identities=20% Similarity=0.341 Sum_probs=149.1
Q ss_pred hhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCC
Q psy7810 15 RKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQK 94 (478)
Q Consensus 15 ~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~ 94 (478)
.|||||+||| |.++|+ +|++++|+|||+||+|+|++|||+++|||+|||+|+|.|+.+||+||||++++
T Consensus 1 ~rYDRQlrLw----------G~~gQ~-~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~ 69 (425)
T cd01493 1 QKYDRQLRLW----------GEHGQA-ALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDAS 69 (425)
T ss_pred CcchHHHHHh----------HHHHHH-HHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChh
Confidence 4899999999 777655 67999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhCCCCeEEEEecccCC---CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCC
Q psy7810 95 DIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD---YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQST 171 (478)
Q Consensus 95 diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~---~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~ 171 (478)
|+|++||++++++|+++||+++++.+...+.+ .+.+|+++||+||++.++...+..+++.|+ +.
T Consensus 70 diGk~kA~~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~-------------~~ 136 (425)
T cd01493 70 SLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLW-------------SA 136 (425)
T ss_pred hcCcHHHHHHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 99999999999999999999999998877653 347899999999999999999999999998 57
Q ss_pred ceeEEEeeeeceeceEEEEcCCCCccccccC
Q psy7810 172 IIPMVDGGTEGFKGNARVILPGMTACIDCTL 202 (478)
Q Consensus 172 ~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~ 202 (478)
++|+|.+++.|+.|++++++|+++ +.++..
T Consensus 137 ~iPlI~~~s~G~~G~v~v~~~~h~-i~et~p 166 (425)
T cd01493 137 NIPLLYVRSYGLYGYIRIQLKEHT-IVESHP 166 (425)
T ss_pred CCCEEEEecccCEEEEEEEECCeE-EEECCC
Confidence 899999999999999999999654 666543
No 30
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=2.1e-36 Score=303.82 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=199.1
Q ss_pred CCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcccc
Q psy7810 10 PGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89 (478)
Q Consensus 10 ~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqf 89 (478)
+.++-.||.||+.+.+. +|.+..|++|++++|+ |||+|+.++.+|+. |||+|+|+|.|.|+.|||+ +
T Consensus 48 ~~~~~~ry~r~l~l~~~-------~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~ 114 (318)
T TIGR03603 48 TKFNLITIIDNLTLKPM-------LIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--D 114 (318)
T ss_pred CHHHHHHHHHHhcCccc-------cCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--H
Confidence 33456799999988532 2434356678999999 99999999999999 9999999999999999999 8
Q ss_pred CCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHH--HHHHHHHHhhhccccCcc
Q psy7810 90 LFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARR--WINGMLLSLLQYEEDGQV 167 (478)
Q Consensus 90 l~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~--~in~~~~~l~~~~~~~~~ 167 (478)
||+++|||++|+++|+++|.++||.++|+.. .++++++|+||+|+||+.+|. ++|++|.
T Consensus 115 L~~~~diG~~K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~----------- 175 (318)
T TIGR03603 115 LYSKEFILKKDIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSK----------- 175 (318)
T ss_pred HhChhhcCcHHHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHH-----------
Confidence 9999999999999999999999999999863 357899999999999999995 5999998
Q ss_pred cCCCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCC
Q psy7810 168 DQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPE 247 (478)
Q Consensus 168 ~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~ 247 (478)
+.++|||.|+..|+.|++.+++|+.|+||+|...........+ ..+.
T Consensus 176 --~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~-----~~~~-------------------------- 222 (318)
T TIGR03603 176 --ETKKPNTIAFIDGPFVFITCTLPPETGCFECLERRLLSRLDWR-----LYGV-------------------------- 222 (318)
T ss_pred --HHCCCEEEEEEccCEEEEEEEeCCCCCcHHHccchhhcccccc-----cccc--------------------------
Confidence 5689999999999999999888999999999864211100000 0000
Q ss_pred CCCCCCCCchhhHHHHHHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHH
Q psy7810 248 HCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAV 327 (478)
Q Consensus 248 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAi 327 (478)
+.++ .++. ... ....+.+.|++++
T Consensus 223 ------------------------------~~~~-------------------~~~~-----~~~--~~~~gv~gp~~gi 246 (318)
T TIGR03603 223 ------------------------------FTEY-------------------LVKA-----ENN--VSTAELIFPLLNI 246 (318)
T ss_pred ------------------------------cccc-------------------cCCC-----CCC--CccCCeehhHHHH
Confidence 0000 0000 000 0112456889999
Q ss_pred HHHHHHHHHHHHhcCCCCC-ccceEE-EeeCCCceEEeeccccCCCCccCCCCCCCeEEEEcCCCCcHHHHHHHH
Q psy7810 328 IAATCATEVFKLATGCATS-LNNYMV-FNDVAGIYTYTYEAERKSNCLACGPANQPKYLDIESLDMKLSELIELL 400 (478)
Q Consensus 328 vagl~~~EalK~l~~~~~p-l~n~~~-~~~~~g~~~~~~~~~~~~~C~vC~~~~~~~~~~~~~~~~Tl~~li~~l 400 (478)
+|++++.||+ +++|.+.+ +.+.++ |+.. ...+......++|+|++|+ ..+ ++.....+++=+++++.+
T Consensus 247 igsl~a~Eai-~i~g~g~~~l~g~ll~id~~-t~~~~~~~l~k~p~Cp~CG--~~~-~~~~~~~~~~~~~~~~~~ 316 (318)
T TIGR03603 247 KKNLVVSEIF-AIGSLGTSKFEGRLLSINLP-TLEIQFQDILKQSCCSTCG--TFN-KIKFEEQNISTRNIVKEL 316 (318)
T ss_pred HHHHHHHHHH-HHhCCCCcccCCeEEEEECC-CCeEEEEecCCCCCCcccC--Ccc-ccchhhhhhhHHHHHHHH
Confidence 9999999999 99998775 446554 5544 5566788889999999999 432 333333334446666655
No 31
>KOG2012|consensus
Probab=100.00 E-value=3e-36 Score=318.12 Aligned_cols=332 Identities=19% Similarity=0.235 Sum_probs=244.2
Q ss_pred CCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcccc
Q psy7810 10 PGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89 (478)
Q Consensus 10 ~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqf 89 (478)
.+-+.+-|+||++++ |.|+|+++ ..++|||.|+||||.||||||+|+||+++||.|...+.++||+.||
T Consensus 13 ~~IDE~LYSRQLYVl----------G~eAM~~m-~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf 81 (1013)
T KOG2012|consen 13 QEIDESLYSRQLYVL----------GHEAMRRM-QGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQF 81 (1013)
T ss_pred hhhhhhhhhhhhhhc----------cHHHHHHH-hhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccce
Confidence 345577899999999 89999975 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccC
Q psy7810 90 LFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQ 169 (478)
Q Consensus 90 l~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~ 169 (478)
+++++|||++||++..++|.++|+.|.|.++...+ +.+|+++|++||.+--..+....||+.|+
T Consensus 82 ~L~E~DigknRA~as~~~LaeLN~yV~V~v~t~~~---~~e~L~~FqvVVlt~~~le~q~~i~~fch------------- 145 (1013)
T KOG2012|consen 82 YLSEEDIGKNRAEASVEKLAELNNYVPVVVLTGPL---TEEFLSDFQVVVLTDASLEEQLKINDFCH------------- 145 (1013)
T ss_pred eeeHHhcCCchHHHHHHHHHHhhcceeeEEecCcc---cHHHHhCCcEEEEecCchHHHHHHHHHHH-------------
Confidence 99999999999999999999999999999988653 37899999999999888999999999998
Q ss_pred CCceeEEEeeeeceeceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccc----------
Q psy7810 170 STIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTI---------- 239 (478)
Q Consensus 170 ~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~---------- 239 (478)
+++|.+|.+.+.|+.|+++.++.....|++-... ++.+.-.-.|.+.-.-...|+.-+++.|+...+
T Consensus 146 ~~~i~fi~ad~RGLfg~lFCDFG~eF~v~D~tGe---eP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~ 222 (1013)
T KOG2012|consen 146 SHGIAFIAADTRGLFGQLFCDFGEEFTVLDPTGE---EPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMT 222 (1013)
T ss_pred hcCeEEEEeccchhhhhhhccCCCceEEeCCCCC---cchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeecccc
Confidence 6789999999999999999998877666654332 111111111111100112233334443332211
Q ss_pred ----------------------------------cCCCCCCCCC-----------------CCCCCCchhhHHHHHHhhh
Q psy7810 240 ----------------------------------ASTPRLPEHC-----------------DLPPRLPEHCIEYVKVIQW 268 (478)
Q Consensus 240 ----------------------------------~~~~~~~~~~-----------------~~~~~~~~~c~~~~~~~~~ 268 (478)
..+.+.|+.+ |+.+...+.+++.+...+.
T Consensus 223 eLN~~~P~kI~v~~p~sf~Igdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~ 302 (1013)
T KOG2012|consen 223 ELNDCKPRKITVLGPYSFSIGDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALH 302 (1013)
T ss_pred ccCCCCceEEEEecCceEEeccccchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHH
Confidence 1122333222 2222334457776655555
Q ss_pred ccCCCCCC---CCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHHHHHHHHHHHhcCCCC
Q psy7810 269 SKENPFDC---PIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCAT 345 (478)
Q Consensus 269 ~~~~~~~~---~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl~~~EalK~l~~~~~ 345 (478)
.+...+|+ ..+..|...+-.++...+.... --+.++..+++.++...-.-+.|++|++||+++||++|..+|++.
T Consensus 303 ~F~~~~Gr~P~p~~e~DA~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~ 380 (1013)
T KOG2012|consen 303 QFQEAHGRLPRPGNEEDAEELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFT 380 (1013)
T ss_pred HHHHHhCCCCCCCChhhHHHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCcc
Confidence 44433343 4555554444433333333222 124577888888888888889999999999999999999999999
Q ss_pred CccceEEEeeCCCceEEeeccccCCCCccCCC
Q psy7810 346 SLNNYMVFNDVAGIYTYTYEAERKSNCLACGP 377 (478)
Q Consensus 346 pl~n~~~~~~~~g~~~~~~~~~~~~~C~vC~~ 377 (478)
|+.+|++||+.+.++.. .-.+.|.-|.+
T Consensus 381 PL~Q~lYfDale~LP~d----~~~~~e~d~~p 408 (1013)
T KOG2012|consen 381 PLKQWLYFDALESLPSD----NLPPSEEDCQP 408 (1013)
T ss_pred chhHheehhhHhhCCCc----CCCCCHHHccc
Confidence 99999999999877653 12345666764
No 32
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=2e-34 Score=317.76 Aligned_cols=166 Identities=22% Similarity=0.292 Sum_probs=152.9
Q ss_pred hhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCC
Q psy7810 14 ARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQ 93 (478)
Q Consensus 14 ~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~ 93 (478)
..||+||+.+| |.+.|+ +|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.|||||||+|+.
T Consensus 312 ~~ry~Rqi~li----------g~e~Q~-kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~ 380 (989)
T PRK14852 312 DIAFSRNLGLV----------DYAGQR-RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASI 380 (989)
T ss_pred HHHhhchHhhc----------CHHHHH-HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCCh
Confidence 45799998888 788755 6799999999999999999999999999999999999999999999999999
Q ss_pred CccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcH--HHHHHHHHHHHHhhhccccCcccCC
Q psy7810 94 KDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSI--VARRWINGMLLSLLQYEEDGQVDQS 170 (478)
Q Consensus 94 ~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~--~~r~~in~~~~~l~~~~~~~~~~~~ 170 (478)
+|||++||++++++++++||+++|+++...+.+.+ ++|++++|+||+|+|++ +++++++..|+ +
T Consensus 381 ~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~-------------~ 447 (989)
T PRK14852 381 ASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL-------------E 447 (989)
T ss_pred hhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH-------------H
Confidence 99999999999999999999999999999987655 78999999999999984 57889998897 5
Q ss_pred CceeEEEeeeeceeceEEEEcCCCCccccccCCC
Q psy7810 171 TIIPMVDGGTEGFKGNARVILPGMTACIDCTLDL 204 (478)
Q Consensus 171 ~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~ 204 (478)
.+||+|.+++.|+.|++.++.|+. .|++|.++.
T Consensus 448 ~~IP~I~ag~~G~~g~v~v~~p~~-~~~~~~f~~ 480 (989)
T PRK14852 448 LGIPVITAGPLGYSCALLVFMPGG-MNFDSYFGI 480 (989)
T ss_pred cCCCEEEeeccccCeeEEEEcCCC-CCHHHhCCC
Confidence 789999999999999999998865 899998864
No 33
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=311.63 Aligned_cols=170 Identities=23% Similarity=0.320 Sum_probs=158.0
Q ss_pred CCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcccc
Q psy7810 10 PGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89 (478)
Q Consensus 10 ~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqf 89 (478)
.+++.+||+||+.+| |.+.|+ +|++++|+|||+||+||+++++|+++|||+|+|+|+|.|++|||||||
T Consensus 19 ~~~~~~ry~R~~~l~----------g~e~Q~-kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~ 87 (679)
T PRK14851 19 AEYREAAFSRNIGLF----------TPGEQE-RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQF 87 (679)
T ss_pred HHHHHHHhhhhHHhc----------CHHHHH-HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCc
Confidence 457789999999998 778655 679999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCc--HHHHHHHHHHHHHhhhccccCc
Q psy7810 90 LFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDS--IVARRWINGMLLSLLQYEEDGQ 166 (478)
Q Consensus 90 l~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn--~~~r~~in~~~~~l~~~~~~~~ 166 (478)
+|+.+|||++|+++++++++++||+++|+++...+.+.+ .+|++++|+||+|+|+ .++|.++|+.|+
T Consensus 88 ~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---------- 157 (679)
T PRK14851 88 GARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---------- 157 (679)
T ss_pred CcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH----------
Confidence 999999999999999999999999999999999998766 7899999999999997 578999999998
Q ss_pred ccCCCceeEEEeeeeceeceEEEEcCCCCccccccCCC
Q psy7810 167 VDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDL 204 (478)
Q Consensus 167 ~~~~~~ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~~~ 204 (478)
+.++|+|.+|+.|+.|++.++.|+ +.|+.|.++.
T Consensus 158 ---~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~~ 191 (679)
T PRK14851 158 ---EKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFNI 191 (679)
T ss_pred ---HCCCCEEEeecccccceEEEEcCC-CCCHhHhccC
Confidence 578999999999999999999987 7899998764
No 34
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=1.7e-33 Score=267.95 Aligned_cols=144 Identities=26% Similarity=0.363 Sum_probs=130.0
Q ss_pred ChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q psy7810 35 SSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPG 114 (478)
Q Consensus 35 G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~ 114 (478)
|.+.|+ +|++++|+|||+||+|++++++|+++|+++|+|+|.|.|+.+||+||+++ ++|+|++|+++++++++++||+
T Consensus 19 g~~~q~-~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 19 TPKLLE-KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred CHHHHH-HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCC
Confidence 888755 56999999999999999999999999999999999999999999999976 7899999999999999999999
Q ss_pred CeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCC-ceeEEEeeeeceeceEEEEcC
Q psy7810 115 VKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQST-IIPMVDGGTEGFKGNARVILP 192 (478)
Q Consensus 115 v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~-~ip~i~~g~~G~~G~v~~~~p 192 (478)
++++++...+.+.+ .++++++|+||+|+|+.++|..+++.|. +. ++|+|.++..+..|++..+.+
T Consensus 97 v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~-------------~~~~~p~I~~~~~~~~~~~~~~~~ 163 (212)
T PRK08644 97 VEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVL-------------EHPGKKLVAASGMAGYGDSNSIKT 163 (212)
T ss_pred CEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH-------------HhCCCCEEEeehhhccCCceEEEe
Confidence 99999998887655 4789999999999999999999999998 45 899999877777777665555
Q ss_pred C
Q psy7810 193 G 193 (478)
Q Consensus 193 ~ 193 (478)
.
T Consensus 164 ~ 164 (212)
T PRK08644 164 R 164 (212)
T ss_pred c
Confidence 3
No 35
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=4.7e-32 Score=287.24 Aligned_cols=136 Identities=24% Similarity=0.300 Sum_probs=125.6
Q ss_pred HHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCcc---CchHHHHHHHHHHhhCCCCeE
Q psy7810 41 FLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDI---GSSKAEVAAKFINSRIPGVKV 117 (478)
Q Consensus 41 ~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~di---G~~Ka~aa~~~l~~~np~v~i 117 (478)
++|+++||+|||||||||++|++|+++|||+|+|||+|+|+.|||+||+||+.+|+ |++||++|+++|+++||.+++
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i 413 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQA 413 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEE
Confidence 46799999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EEEeccc-------CCC-----------chhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEee
Q psy7810 118 IPHFCKI-------QDY-----------DSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGG 179 (478)
Q Consensus 118 ~~~~~~i-------~~~-----------~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g 179 (478)
+.+...| .+. ..++++++|+|++|+||.++|..+|.+|. ..++|+|+++
T Consensus 414 ~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~-------------~~~kplI~aA 480 (664)
T TIGR01381 414 TGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCS-------------RHKKIAISAA 480 (664)
T ss_pred EEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHH-------------HhCCCEEEEE
Confidence 9988774 221 24688999999999999999999999998 5789999985
Q ss_pred eeceeceEEEE
Q psy7810 180 TEGFKGNARVI 190 (478)
Q Consensus 180 ~~G~~G~v~~~ 190 (478)
.|+.|++...
T Consensus 481 -lGfdg~lvmr 490 (664)
T TIGR01381 481 -LGFDSYVVMR 490 (664)
T ss_pred -eccceEEEEE
Confidence 8999999776
No 36
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=2.1e-31 Score=236.34 Aligned_cols=133 Identities=36% Similarity=0.591 Sum_probs=122.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
|++||+|+|+||+|++++++|+++|+++|+|+|.|.|+++||+|||||+.+|+|++|+++++++++++||+++++++..+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-chhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEE
Q psy7810 124 IQDY-DSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARV 189 (478)
Q Consensus 124 i~~~-~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~ 189 (478)
+.+. ..++++++|+||+|+|+.+++.++++.|+ +.++|+|++++.|+.|+++.
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~-------------~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICR-------------EYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHH-------------HTT-EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHH-------------HcCCCEEEEEeecCEEEEEE
Confidence 8543 47788999999999999999999999998 57899999999999999853
No 37
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=2.6e-31 Score=245.59 Aligned_cols=142 Identities=27% Similarity=0.348 Sum_probs=128.4
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
||+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++..++..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999995 57899999999999999999999999999998876
Q ss_pred Cc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEEEcCCC--Ccccccc
Q psy7810 127 YD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGM--TACIDCT 201 (478)
Q Consensus 127 ~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~p~~--t~c~~c~ 201 (478)
.+ .++++++|+||+|+||.++|..+++.|.. ..++|+|.++..|+.|++..+.|+. .+||+|.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~------------~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLG------------NKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH------------HCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 54 67899999999999999999988887762 2389999999999999998776654 4699885
No 38
>PRK07877 hypothetical protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=284.60 Aligned_cols=165 Identities=22% Similarity=0.269 Sum_probs=147.4
Q ss_pred hhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCC-CeEEEEeCCcCCccCCccccCCC
Q psy7810 14 ARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGF-NEIHVIDMDTIDLSNLNRQFLFR 92 (478)
Q Consensus 14 ~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gv-g~i~iiD~D~v~~sNL~rqfl~~ 92 (478)
..||+|++.++ |.+.|+ +|++++|+|||+| +||.++.+|+++|| |+|+|+|+|.||+|||||| +|+
T Consensus 87 ~~r~~Rn~~~i----------g~~~Q~-~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~ 153 (722)
T PRK07877 87 AVRLDRNRNKI----------TAEEQE-RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAG 153 (722)
T ss_pred HHHhhchhhhC----------CHHHHH-HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCC
Confidence 57899999888 788655 6799999999996 99999999999996 9999999999999999999 589
Q ss_pred CCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCC
Q psy7810 93 QKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQST 171 (478)
Q Consensus 93 ~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~ 171 (478)
..|+|++|+++++++++++||+++|+++...++..+ .+|++++|+||+|+||+++|.++|+.|. +.
T Consensus 154 ~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~-------------~~ 220 (722)
T PRK07877 154 VFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAAR-------------AR 220 (722)
T ss_pred hhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 999999999999999999999999999999998766 7789999999999999999999999998 57
Q ss_pred ceeEEEeeeeceeceEE---EEcCCCCccccccCCCCC
Q psy7810 172 IIPMVDGGTEGFKGNAR---VILPGMTACIDCTLDLFP 206 (478)
Q Consensus 172 ~ip~i~~g~~G~~G~v~---~~~p~~t~c~~c~~~~~p 206 (478)
++|+|.++..+ |++. +.+...++||.|++...+
T Consensus 221 ~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl~~~~~ 256 (722)
T PRK07877 221 RIPVLMATSDR--GLLDVERFDLEPDRPILHGLLGDID 256 (722)
T ss_pred CCCEEEEcCCC--CCcCcceeeeCCCCceeeccCCCCC
Confidence 99999988554 7762 333347899999987544
No 39
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=6.7e-31 Score=256.72 Aligned_cols=151 Identities=24% Similarity=0.369 Sum_probs=136.5
Q ss_pred CCCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcc
Q psy7810 8 SSPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNR 87 (478)
Q Consensus 8 ~~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~r 87 (478)
.+++++..||+||.+|| |.++++ +|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|+||
T Consensus 4 ~~~~~~~~rf~R~~~L~----------G~e~~~-kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnR 72 (268)
T PRK15116 4 VISDAWRQRFGGTARLY----------GEKALQ-LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNR 72 (268)
T ss_pred CCCHHHHHHHhhHHHHh----------CHHHHH-HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccccc
Confidence 45677889999999999 888877 5699999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhh-ccccEEEeccCcHHHHHHHHHHHHHhhhccccC
Q psy7810 88 QFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFY-QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDG 165 (478)
Q Consensus 88 qfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~-~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~ 165 (478)
|+++..+++|++|+++++++++++||+++|+++...+...+ .+++ .+||+||+|.|++.++..+++.|+
T Consensus 73 Q~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~--------- 143 (268)
T PRK15116 73 QIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCR--------- 143 (268)
T ss_pred ccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999977766444 4555 479999999999999999999998
Q ss_pred cccCCCceeEEEeeeec
Q psy7810 166 QVDQSTIIPMVDGGTEG 182 (478)
Q Consensus 166 ~~~~~~~ip~i~~g~~G 182 (478)
+.++|+|.++..|
T Consensus 144 ----~~~ip~I~~gGag 156 (268)
T PRK15116 144 ----RNKIPLVTTGGAG 156 (268)
T ss_pred ----HcCCCEEEECCcc
Confidence 5689999886444
No 40
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=8.8e-31 Score=252.29 Aligned_cols=162 Identities=27% Similarity=0.372 Sum_probs=140.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCC-----C-----eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGF-----N-----EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP 113 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gv-----g-----~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np 113 (478)
+.++|+|||+||+||+++++|+++|+ | +|+|+|+|+|+++||+|| +|.++|||++||+++++++++.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~- 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM- 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc-
Confidence 78999999999999999999999973 4 999999999999999999 57889999999999999999988
Q ss_pred CCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeee--------ece--
Q psy7810 114 GVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGT--------EGF-- 183 (478)
Q Consensus 114 ~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~--------~G~-- 183 (478)
+++++++...+.. .+++.++|+||+|+||.++|.++++.|... . ...+||+++|+ .|.
T Consensus 88 ~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~-~---------~~~~~~ld~Gn~~~~gqv~~g~i~ 155 (244)
T TIGR03736 88 GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGG-Y---------SGYAYWLDLGNRADDGQVILGQVP 155 (244)
T ss_pred CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHh-c---------ccccceecccCCCCCCcEEEEecc
Confidence 8999999988776 345678999999999999999999999731 0 12489999998 444
Q ss_pred ---eceEEEEcCCCCccccccCCCCC-CCCCCCcceeccC
Q psy7810 184 ---KGNARVILPGMTACIDCTLDLFP-PQVTYPLCTIAST 219 (478)
Q Consensus 184 ---~G~v~~~~p~~t~c~~c~~~~~p-~~~~~p~cti~~~ 219 (478)
+|+..+++|..|+||.|..+..+ ++.+.|.||+++.
T Consensus 156 ~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~a 195 (244)
T TIGR03736 156 SRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEA 195 (244)
T ss_pred cccccCCceecCCchhhCcccccCccCCCCCCCCchHHHH
Confidence 56777889999999999987533 6678999998764
No 41
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=6.9e-30 Score=228.84 Aligned_cols=132 Identities=42% Similarity=0.657 Sum_probs=125.4
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
||+|||+||+|++++++|+++|+++|+|+|+|.|+++||+||||++++|+|++|+++++++++++||+++++.+...+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred Cc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceEEEEc
Q psy7810 127 YD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVIL 191 (478)
Q Consensus 127 ~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v~~~~ 191 (478)
.+ .++++++|+||+|.|+.++|.++|+.|+ +.++|+|++++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~-------------~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACK-------------ELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------HcCCCEEEEcCCCcEEEEEEEE
Confidence 44 6789999999999999999999999998 5689999999999999999876
No 42
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.96 E-value=9.1e-29 Score=233.38 Aligned_cols=120 Identities=24% Similarity=0.413 Sum_probs=110.6
Q ss_pred ChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q psy7810 35 SSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPG 114 (478)
Q Consensus 35 G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~ 114 (478)
|++.++ +|++++|+|||+||+|++++++|+++|+++|+|+|.|.|+.+||+||+ |..+|+|++|+++++++++++||.
T Consensus 12 ~~~~q~-~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 12 TPKIVQ-KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred CHHHHH-HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCC
Confidence 788755 679999999999999999999999999999999999999999999997 577999999999999999999999
Q ss_pred CeEEEEecccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 115 VKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 115 v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
++++++..++++.+ .++++++|+||+|+||.++|..++..|.
T Consensus 90 ~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~ 132 (200)
T TIGR02354 90 TEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVL 132 (200)
T ss_pred CEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence 99999998887655 6789999999999999999998876665
No 43
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.96 E-value=2.9e-29 Score=245.94 Aligned_cols=131 Identities=25% Similarity=0.339 Sum_probs=118.9
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCc--cCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKD--IGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~d--iG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
||+|||+|||||++|++|+++|||+|+|+|+|+|+.+||+||+||+.+| +|++||++|+++|+++||+++++.+...|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999987654
Q ss_pred C----------------CC--chhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceece
Q psy7810 125 Q----------------DY--DSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGN 186 (478)
Q Consensus 125 ~----------------~~--~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~ 186 (478)
. +. ..++++++|+|++|+||.++|..+|.+|. ..++|+|+ +..||.|+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~-------------~~~k~~I~-aalGfdg~ 146 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSA-------------AKNKLVIN-AALGFDSY 146 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHH-------------HhCCcEEE-EEeccceE
Confidence 1 11 25788999999999999999999999998 56899998 57799999
Q ss_pred EEEEc
Q psy7810 187 ARVIL 191 (478)
Q Consensus 187 v~~~~ 191 (478)
+....
T Consensus 147 lvmrh 151 (307)
T cd01486 147 LVMRH 151 (307)
T ss_pred EEEEe
Confidence 86653
No 44
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=3.6e-29 Score=240.46 Aligned_cols=137 Identities=26% Similarity=0.310 Sum_probs=125.0
Q ss_pred CChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC
Q psy7810 34 PSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP 113 (478)
Q Consensus 34 ~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np 113 (478)
+|.++++ +|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|||||+++..+|+|++|+++++++++++||
T Consensus 1 ~G~e~~~-~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP 79 (231)
T cd00755 1 YGEEGLE-KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP 79 (231)
T ss_pred CCHHHHH-HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence 4888866 569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCc-hhhh-ccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeecee
Q psy7810 114 GVKVIPHFCKIQDYD-SDFY-QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFK 184 (478)
Q Consensus 114 ~v~i~~~~~~i~~~~-~~~~-~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~ 184 (478)
+++|+++...+...+ .+++ .+||+||+|.|+..++..+++.|+ +.++|+|.++..|.+
T Consensus 80 ~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~-------------~~~ip~I~s~g~g~~ 139 (231)
T cd00755 80 ECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCR-------------KRKIPVISSMGAGGK 139 (231)
T ss_pred CcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH-------------HhCCCEEEEeCCcCC
Confidence 999999998887544 4455 579999999999999999999998 568999998776654
No 45
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.95 E-value=1.6e-27 Score=225.44 Aligned_cols=122 Identities=14% Similarity=0.215 Sum_probs=109.7
Q ss_pred CCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 9 SPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 9 ~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
+++++..||+||+++| |.++|+ +|++++|+|||+||+|+|++|||+++|||+|+|+|+|.|+.+||+||
T Consensus 1 ms~~E~~RYsRQIrLw----------G~EgQ~-KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQ 69 (287)
T PTZ00245 1 MRDAEAVRYDRQIRLW----------GKSTQQ-QLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTN 69 (287)
T ss_pred CCHHHHHHHhHHHHHh----------CHHHHH-HHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhccc
Confidence 3567789999999999 888755 66999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHH
Q psy7810 89 FLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVA 147 (478)
Q Consensus 89 fl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~ 147 (478)
||+++ |+|++||++++++++++||+++|+++..+++.. .+|++||.+.-..+.
T Consensus 70 fl~~~-dvGk~KAeaAa~~L~eLNP~V~V~~i~~rld~~-----n~fqvvV~~~~~le~ 122 (287)
T PTZ00245 70 YLMQG-EAGGTRGARALGALQRLNPHVSVYDAVTKLDGS-----SGTRVTMAAVITEED 122 (287)
T ss_pred ccccc-ccCCcHHHHHHHHHHHHCCCcEEEEcccccCCc-----CCceEEEEEcccHHH
Confidence 99997 689999999999999999999999998877653 489999988665443
No 46
>KOG2336|consensus
Probab=99.95 E-value=7.8e-28 Score=227.66 Aligned_cols=222 Identities=23% Similarity=0.381 Sum_probs=176.3
Q ss_pred HHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEE
Q psy7810 39 LSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVI 118 (478)
Q Consensus 39 ~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~ 118 (478)
++ ++|...|.|||.||+|+-.|..|.++|+|++.+.|.|+|++.|+||-| |+++..|.+|+++|.+.|..+||+|.++
T Consensus 77 YE-rIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~iE 154 (422)
T KOG2336|consen 77 YE-RIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVIE 154 (422)
T ss_pred HH-HHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEEE
Confidence 55 459999999999999999999999999999999999999999999986 5999999999999999999999999999
Q ss_pred EEecccCCC-c-hhhh-----------ccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee--ce
Q psy7810 119 PHFCKIQDY-D-SDFY-----------QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE--GF 183 (478)
Q Consensus 119 ~~~~~i~~~-~-~~~~-----------~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~--G~ 183 (478)
.|+-+|..- + +.|. +..|+|+.|+||++||..+|.+|- +.+.-|+.+|+. ..
T Consensus 155 ~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN-------------E~~q~WmESGVSEnAV 221 (422)
T KOG2336|consen 155 VHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN-------------ELNQTWMESGVSENAV 221 (422)
T ss_pred EeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH-------------HhhhHHHHccCccccc
Confidence 999887521 1 2221 347999999999999999999996 456778888875 56
Q ss_pred eceEEEEcCCCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhccccccccCCCCCCCCCCCCCCCchhhHHHH
Q psy7810 184 KGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYV 263 (478)
Q Consensus 184 ~G~v~~~~p~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 263 (478)
.|+++.+.||.|+||.|..+..-..
T Consensus 222 SGHIQ~i~PGetACFACaPPlVVAs------------------------------------------------------- 246 (422)
T KOG2336|consen 222 SGHIQLIVPGETACFACAPPLVVAS------------------------------------------------------- 246 (422)
T ss_pred cceeEEecCCccceecccCceeeec-------------------------------------------------------
Confidence 8999999999999999974311000
Q ss_pred HHhhhccCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHHHHHHHHHHHhcCC
Q psy7810 264 KVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGC 343 (478)
Q Consensus 264 ~~~~~~~~~~~~~~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl~~~EalK~l~~~ 343 (478)
||...+. .-.|+. ...++||-+++||+++|-++|+|-+-
T Consensus 247 -------------------------------------~IDErTL-KReGVC---AASLPTTMgvvAG~LVqN~LK~LLNF 285 (422)
T KOG2336|consen 247 -------------------------------------GIDERTL-KREGVC---AASLPTTMGVVAGFLVQNSLKFLLNF 285 (422)
T ss_pred -------------------------------------Ccchhhh-hhccee---eecCcchHHHHHHHHHHHHHHHHhhc
Confidence 0000000 001332 23567899999999999999999876
Q ss_pred CCCccceEEEeeCCCceEEeeccccCCCCc
Q psy7810 344 ATSLNNYMVFNDVAGIYTYTYEAERKSNCL 373 (478)
Q Consensus 344 ~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~ 373 (478)
++ ...|+-|+.. ..++++.++.|||.|-
T Consensus 286 Ge-VS~YlGYNal-~DFFP~msmkPNPqCd 313 (422)
T KOG2336|consen 286 GE-VSPYLGYNAL-SDFFPTMSMKPNPQCD 313 (422)
T ss_pred cc-cchhhcchhH-HhhCccccCCCCCCCC
Confidence 53 4566666655 4567778899999974
No 47
>KOG2016|consensus
Probab=99.95 E-value=8.1e-27 Score=232.88 Aligned_cols=162 Identities=22% Similarity=0.332 Sum_probs=144.1
Q ss_pred CCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcccc
Q psy7810 10 PGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89 (478)
Q Consensus 10 ~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqf 89 (478)
+.+.+.|||||.||| |.+. |..|..++|+++|||++|||++|||++.|||++|++|...|+.++++.+|
T Consensus 3 ~~~~~~kYDRQlRlw----------ge~g-Q~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF 71 (523)
T KOG2016|consen 3 MSEPKTKYDRQLRLW----------GEEG-QAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNF 71 (523)
T ss_pred ccchhhHHHHHHHHH----------HHHh-HhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHH
Confidence 456789999999999 6665 44679999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc---CCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCc
Q psy7810 90 LFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI---QDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQ 166 (478)
Q Consensus 90 l~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i---~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~ 166 (478)
+...+++|++||++..+.++++||.|.-......- -..+.+||++|++||.+--+.+....+.+.|+
T Consensus 72 ~~~~~~~GksrA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~---------- 141 (523)
T KOG2016|consen 72 FLDAKSIGKSRAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILR---------- 141 (523)
T ss_pred HHHHHhhchhHHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHH----------
Confidence 99999999999999999999999998766544332 24567899999999988888888888999998
Q ss_pred ccCCCceeEEEeeeeceeceEEEEcCCCC
Q psy7810 167 VDQSTIIPMVDGGTEGFKGNARVILPGMT 195 (478)
Q Consensus 167 ~~~~~~ip~i~~g~~G~~G~v~~~~p~~t 195 (478)
++++|++++-+.|+.|.++..+..|+
T Consensus 142 ---~~~vpll~~rs~Gl~G~iRI~ikEH~ 167 (523)
T KOG2016|consen 142 ---EANVPLLLTRSYGLAGTIRISIKEHT 167 (523)
T ss_pred ---hcCCceEEEeeecceEEEEEEeeecc
Confidence 68999999999999999999887753
No 48
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=4.6e-27 Score=220.32 Aligned_cols=148 Identities=24% Similarity=0.366 Sum_probs=134.1
Q ss_pred CchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccC
Q psy7810 11 GNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFL 90 (478)
Q Consensus 11 ~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl 90 (478)
+.+..||.|..+|+ |.+++++ |++++|+|||+||+|+.++..|+++|+|+|+|||+|.|+++|+|||.-
T Consensus 7 ~~~~~rf~~~~~l~----------G~~~lek-l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~ 75 (263)
T COG1179 7 DAYRQRFGGIARLY----------GEDGLEK-LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIH 75 (263)
T ss_pred HHHHHHhhhHHHHc----------ChhHHHH-HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhH
Confidence 45678999999999 8888885 599999999999999999999999999999999999999999999976
Q ss_pred CCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hhhh-ccccEEEeccCcHHHHHHHHHHHHHhhhccccCccc
Q psy7810 91 FRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SDFY-QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVD 168 (478)
Q Consensus 91 ~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~~~-~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~ 168 (478)
--..+||++|+++++++++.+||.++|+++...+.+.+ .+|+ .+||.||||.|++.++..+-..|+
T Consensus 76 A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~------------ 143 (263)
T COG1179 76 ALLGDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCR------------ 143 (263)
T ss_pred hhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHH------------
Confidence 56689999999999999999999999999999988766 5554 579999999999999999999998
Q ss_pred CCCceeEEEeeeec
Q psy7810 169 QSTIIPMVDGGTEG 182 (478)
Q Consensus 169 ~~~~ip~i~~g~~G 182 (478)
++++|+|.++-.|
T Consensus 144 -~~ki~vIss~Gag 156 (263)
T COG1179 144 -RNKIPVISSMGAG 156 (263)
T ss_pred -HcCCCEEeecccc
Confidence 5789999876443
No 49
>PRK06153 hypothetical protein; Provisional
Probab=99.94 E-value=2.7e-26 Score=231.71 Aligned_cols=164 Identities=23% Similarity=0.248 Sum_probs=135.9
Q ss_pred chhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcccc-C
Q psy7810 12 NMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF-L 90 (478)
Q Consensus 12 ~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqf-l 90 (478)
++...|.-+..+..|. |..++|++|++++|+||||||+||.++..|+++||++|+|+|.|.|+.+||+||+ +
T Consensus 150 ~~~svf~y~dt~s~R~-------~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~ga 222 (393)
T PRK06153 150 EEDSVFNYPDTASSRA-------GIGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGA 222 (393)
T ss_pred ccCCceehhhhhcccc-------ChHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccccccccc
Confidence 3344555556666554 4445677889999999999999999999999999999999999999999999998 6
Q ss_pred CCCCccCc--hHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCccc
Q psy7810 91 FRQKDIGS--SKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVD 168 (478)
Q Consensus 91 ~~~~diG~--~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~ 168 (478)
|+.+|+|+ +|+++++++++++|| .|.++...+.+.+.+.+.++|+||+|+|+.++|.++|+.|.
T Consensus 223 f~~~DvGk~~~KVevaa~rl~~in~--~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~------------ 288 (393)
T PRK06153 223 ASIEELREAPKKVDYFKSRYSNMRR--GIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLE------------ 288 (393)
T ss_pred CCHhHcCCcchHHHHHHHHHHHhCC--eEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH------------
Confidence 79999999 999999999999997 46777778876666678999999999999999999999998
Q ss_pred CCCceeEEEeeeeceeceEEEEcCC-CCccccccCC
Q psy7810 169 QSTIIPMVDGGTEGFKGNARVILPG-MTACIDCTLD 203 (478)
Q Consensus 169 ~~~~ip~i~~g~~G~~G~v~~~~p~-~t~c~~c~~~ 203 (478)
..++|+|++|..= .+. .+ ...|.+|+..
T Consensus 289 -~~gIP~Id~G~~l-----~~~-~g~l~G~~Rvt~~ 317 (393)
T PRK06153 289 -ALGIPFIDVGMGL-----ELS-NGSLGGILRVTLS 317 (393)
T ss_pred -HcCCCEEEeeecc-----eec-CCCcCcEEEEEEe
Confidence 5689999988531 111 22 2458888764
No 50
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.84 E-value=2.4e-20 Score=196.49 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=132.9
Q ss_pred CCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 9 SPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 9 ~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
.++...+||..|+.+++. |++ .|...+++- +++||+|+|.||+|+.++.+|+.+|+++|+.+|.|.+ .+|++|
T Consensus 98 L~~a~lERYaaqI~F~~~---fs~-s~~~rF~~q-R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR- 170 (637)
T TIGR03693 98 LESALLDRYAAQIEFIEA---DAD-SGALKFELS-RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR- 170 (637)
T ss_pred CCHHHHHHHHHHHHHHHH---hcc-Cchhhhhhh-hcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH-
Confidence 344567999999999965 443 244556754 9999999999999999999999999999999999999 999999
Q ss_pred cCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCchhhhccccEEEeccC--cHHHHHHHHHHHHHhhhccccCc
Q psy7810 89 FLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLD--SIVARRWINGMLLSLLQYEEDGQ 166 (478)
Q Consensus 89 fl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~D--n~~~r~~in~~~~~l~~~~~~~~ 166 (478)
||+. ++.|++ +||+++|+.......+.-.+.++++|+||...| +..--+++|+.|+
T Consensus 171 -------IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acv---------- 228 (637)
T TIGR03693 171 -------IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCK---------- 228 (637)
T ss_pred -------HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHH----------
Confidence 7776 666655 999999999876433444678999999999998 4556789999998
Q ss_pred ccCCCc---eeEEEeeeeceeceEEEEcCCCCccccccC
Q psy7810 167 VDQSTI---IPMVDGGTEGFKGNARVILPGMTACIDCTL 202 (478)
Q Consensus 167 ~~~~~~---ip~i~~g~~G~~G~v~~~~p~~t~c~~c~~ 202 (478)
+.+ +|++.+|..++.|-++. |+.++|++|..
T Consensus 229 ---kegk~~IPai~~G~~~liGPlft--PgkTGCWeCa~ 262 (637)
T TIGR03693 229 ---EEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAAW 262 (637)
T ss_pred ---HcCCCeEEEEEcccceeecceEC--CCCCcHHHHHH
Confidence 456 88888999999998876 99999999954
No 51
>KOG2018|consensus
Probab=99.81 E-value=1.8e-19 Score=173.51 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=127.9
Q ss_pred hhhhHH--HHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCC
Q psy7810 14 ARKWNH--LRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLF 91 (478)
Q Consensus 14 ~~r~~~--~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~ 91 (478)
...|+. ++.-+.|+-.|. |.|.+++ |+++-|+||||||+|+.++..|+++|+++|.|||.|.|++|-||||-.-
T Consensus 45 ~~~ydd~lireqLarN~aFf---Gee~m~k-l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~A 120 (430)
T KOG2018|consen 45 PRQYDDELIREQLARNYAFF---GEEGMEK-LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCA 120 (430)
T ss_pred cccccHHHHHHHHHhHHhhh---hhhHHHH-hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhh
Confidence 334553 234455665565 9998775 5999999999999999999999999999999999999999999999988
Q ss_pred CCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc-hh-hhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccC
Q psy7810 92 RQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD-SD-FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQ 169 (478)
Q Consensus 92 ~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~-~~-~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~ 169 (478)
.-.|||.||+..++++++++.|.++|++...-+...+ ++ ++.+.|.|++|.||++++.-+-+.|.
T Consensus 121 tl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~------------- 187 (430)
T KOG2018|consen 121 TLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCY------------- 187 (430)
T ss_pred hHhhcCCchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHH-------------
Confidence 9999999999999999999999999998776655443 33 45678999999999999999999998
Q ss_pred CCceeEEEeee
Q psy7810 170 STIIPMVDGGT 180 (478)
Q Consensus 170 ~~~ip~i~~g~ 180 (478)
++++++|.+--
T Consensus 188 ~~~l~Viss~G 198 (430)
T KOG2018|consen 188 NHGLKVISSTG 198 (430)
T ss_pred HcCCceEeccC
Confidence 67899987643
No 52
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.71 E-value=1.3e-17 Score=129.16 Aligned_cols=67 Identities=39% Similarity=0.668 Sum_probs=56.1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCccchhhhhhhhcccccccccHHHHHHHHHHHHHHHHhcCC
Q psy7810 277 PIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGC 343 (478)
Q Consensus 277 ~~d~dd~~~l~~v~~~a~~ra~~f~I~~~~~~~~k~ia~~iiPaia~tnAivagl~~~EalK~l~~~ 343 (478)
+||+||+.|++||+++||+||++|||+..|++.+++++++++|+++||+|||+|+++.|++|+++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999999999999999999999999999864
No 53
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=99.66 E-value=1.5e-16 Score=128.07 Aligned_cols=84 Identities=43% Similarity=0.705 Sum_probs=74.9
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEecCCCC
Q psy7810 384 LDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTP 463 (478)
Q Consensus 384 ~~~~~~~~Tl~~li~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~d~~~~ 463 (478)
++++++. ||++|++.|+++++|+|.+|+|++. ++.||++.+|++|++++.||+|+|+|| +.+|++|.|+|...+
T Consensus 1 i~v~~~~-TL~~lid~L~~~~~~qlk~PSlt~~----~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~lp 74 (84)
T PF08825_consen 1 IEVSPSW-TLQDLIDSLCEKPEFQLKKPSLTTA----NKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDPTLP 74 (84)
T ss_dssp EEESTTS-BSHHHHHHHHHSTTT--SS-EEESS----EEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEETTES
T ss_pred CCcCccc-hHHHHHHHHHhChhhhcCCCcccCC----CceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECCCCc
Confidence 3566665 9999999999988899999999854 789999999999999999999999999 999999999999999
Q ss_pred eeEEEEEEee
Q psy7810 464 NTLEITLRVT 473 (478)
Q Consensus 464 ~~~~~~i~~~ 473 (478)
.+++++|+|+
T Consensus 75 ~~~~~rl~f~ 84 (84)
T PF08825_consen 75 ISLRLRLKFK 84 (84)
T ss_dssp SEEEEEEEEE
T ss_pred eeEEEEEEeC
Confidence 9999999985
No 54
>KOG2337|consensus
Probab=99.57 E-value=7.8e-15 Score=149.82 Aligned_cols=114 Identities=25% Similarity=0.366 Sum_probs=98.9
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCcc---CchHHHHHHHHHHhhCCCCeEE
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDI---GSSKAEVAAKFINSRIPGVKVI 118 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~di---G~~Ka~aa~~~l~~~np~v~i~ 118 (478)
++.+.|+|+.|||.+||.||++|...||++||++|+.+|..||--||-||.-+|. |++||++|+++|++++|.++-+
T Consensus 337 ~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~at 416 (669)
T KOG2337|consen 337 IISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEAT 416 (669)
T ss_pred hhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcccccc
Confidence 5699999999999999999999999999999999999999999999999999997 5999999999999999998877
Q ss_pred EEeccc-------CCC-----------chhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 119 PHFCKI-------QDY-----------DSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 119 ~~~~~i-------~~~-----------~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
.+.-.| .+. .+++++..|+|+..+|+.++|..-.-++
T Consensus 417 G~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~ 471 (669)
T KOG2337|consen 417 GYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLA 471 (669)
T ss_pred ceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHH
Confidence 765443 111 1456889999999999988875544444
No 55
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=99.43 E-value=3.7e-13 Score=109.70 Aligned_cols=86 Identities=27% Similarity=0.446 Sum_probs=65.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEecCCCC
Q psy7810 384 LDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTP 463 (478)
Q Consensus 384 ~~~~~~~~Tl~~li~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~d~~~~ 463 (478)
+.++...+||++|++.+.+ .+++|..|+++.. +++||.++. +.+++|++|+|++||+.+|++|+|+|+.|.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk-~~Lg~~~P~v~~~----~~ilyd~de----~~~~~~l~k~L~elgi~~gs~L~v~D~~q~ 72 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLK-KKLGMNEPDVSVG----GTILYDSDE----EEYDDNLPKKLSELGIVNGSILTVDDFDQD 72 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCC-CCS--SSEEEEES-----EEEE-SSS----SSSTTCTTSBGGGGT--TT-EEEEEETTTT
T ss_pred EEEechhCcHHHHHHHHHH-hccCCCCCEEEeC----CCEEEcCCc----chhhhcccCChhHcCCCCCCEEEEEEcCCC
Confidence 5677788999999998764 5899999999763 679998752 567899999999999999999999999999
Q ss_pred eeEEEEEEeeccccC
Q psy7810 464 NTLEITLRVTAKMAE 478 (478)
Q Consensus 464 ~~~~~~i~~~~~~~~ 478 (478)
++++|.|.|.+++.|
T Consensus 73 ~~~~i~i~h~~~~~e 87 (87)
T PF14732_consen 73 FNLEINIKHREELEE 87 (87)
T ss_dssp EEEEEEEEE-SSS--
T ss_pred cEEEEEEEecCcccC
Confidence 999999999999876
No 56
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.18 E-value=1.1e-12 Score=92.96 Aligned_cols=44 Identities=45% Similarity=0.985 Sum_probs=35.1
Q ss_pred CCCccccccCCCCCCCCCCCcceeccCCCCCccchhhhhhcccccc
Q psy7810 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCT 238 (478)
Q Consensus 193 ~~t~c~~c~~~~~p~~~~~p~cti~~~p~~~~h~i~wak~~~~~~~ 238 (478)
+.|+||+|..+ +.++++|+|||+++|+.|+|||+|||.+|+.++
T Consensus 1 ~~Tecy~c~~~--~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F 44 (45)
T PF10585_consen 1 HVTECYECSPD--PPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELF 44 (45)
T ss_dssp TTS--TTCSGG--GSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCC--CCCCCCCcchhhcCCCCchHHHHHHHHHHHHHh
Confidence 46899999987 556679999999999999999999998876543
No 57
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=98.98 E-value=9.6e-10 Score=89.31 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=39.7
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCCccceEEEeeCCCceEEeeccccCCCCccCC
Q psy7810 320 AVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACG 376 (478)
Q Consensus 320 aia~tnAivagl~~~EalK~l~~~~~pl~n~~~~~~~~g~~~~~~~~~~~~~C~vC~ 376 (478)
-+.|+.++||+++|+||||+|.|.++++.+.+++.+.....+..+...++|+|++|+
T Consensus 25 Vlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~k~~~C~~C~ 81 (84)
T PF05237_consen 25 VLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIKKNPDCPVCG 81 (84)
T ss_dssp B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE----TT-TTT-
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecCCCccCcCcC
Confidence 458999999999999999999999888887776555556678888899999999999
No 58
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.16 E-value=2.6e-06 Score=80.16 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=69.4
Q ss_pred hHHHHHHhcCCeEEEECCchHHHH-HHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q psy7810 36 SEALSFLQTSCKVLIIGAGGLGCE-LLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPG 114 (478)
Q Consensus 36 ~e~~~~~L~~~~VlvvG~GglG~e-iaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~ 114 (478)
+...+++|++++|.|+|.|+.|++ ++.+|+.+|++.+. + .
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~---------------------~ 136 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------S---------------------E 136 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------C---------------------C
Confidence 333455679999999999999999 99999999998765 0 0
Q ss_pred CeEEEEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceE-EEEcCC
Q psy7810 115 VKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNA-RVILPG 193 (478)
Q Consensus 115 v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v-~~~~p~ 193 (478)
...++|+........-..+|+... ..++||+-....|..+.+ .++.|+
T Consensus 137 ------------------a~l~vVl~~Dyl~p~L~~~n~~~l-------------~~~~~~l~v~~~~~~~~~gp~~~p~ 185 (193)
T TIGR03882 137 ------------------ADLTVVLTDDYLDPELAAINQRAL-------------AAGRPWLLVKPGGVQPWIGPLFKPG 185 (193)
T ss_pred ------------------CCEEEEEeCCCCChHHHHHHHHHH-------------HcCCceEEEEeCCceEEECCeecCC
Confidence 123444433222233346777766 578999988888877777 456799
Q ss_pred CCcccccc
Q psy7810 194 MTACIDCT 201 (478)
Q Consensus 194 ~t~c~~c~ 201 (478)
.|+|++|.
T Consensus 186 ~~~c~~c~ 193 (193)
T TIGR03882 186 KTGCWHCL 193 (193)
T ss_pred CCcccccC
Confidence 99999995
No 59
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.99 E-value=3.4e-05 Score=68.28 Aligned_cols=77 Identities=26% Similarity=0.345 Sum_probs=57.3
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..|++.+++.+ +...+....-
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~~~ 66 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAIPL 66 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEEEG
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----CccccceeeH
Confidence 589999999999999999999999999999998632 24677776666 4444444332
Q ss_pred ccCCCchhhhccccEEEeccCcH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSI 145 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~ 145 (478)
. + ..+.+.++|+||+|+...
T Consensus 67 ~--~-~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 67 E--D-LEEALQEADIVINATPSG 86 (135)
T ss_dssp G--G-HCHHHHTESEEEE-SSTT
T ss_pred H--H-HHHHHhhCCeEEEecCCC
Confidence 1 1 235678999999998753
No 60
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.98 E-value=3.1e-05 Score=77.36 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=60.9
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+. .|++.+++.+...++.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~-------------------~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP-------------------ARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH-------------------HHHHHHHHHHHhhCCCeEEEecc-
Confidence 3567999999999999999999999999999998662 58999999988877765543321
Q ss_pred ccCCCchhhhccccEEEeccC
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLD 143 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~D 143 (478)
...+.+.++|+||+|+.
T Consensus 185 ----~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 185 ----DLAAALAAADGLVHATP 201 (284)
T ss_pred ----chHhhhCCCCEEEECCc
Confidence 11234578999999964
No 61
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.91 E-value=4.9e-05 Score=78.40 Aligned_cols=98 Identities=24% Similarity=0.292 Sum_probs=69.9
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQ 125 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~ 125 (478)
.+|+|+|+|++|+.+|.+|+..|.++|++.|... ..++++...... ++++..-++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5899999999999999999999999999988432 122233232212 6666666665
Q ss_pred CC--chhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 126 DY--DSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 126 ~~--~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
+. ..++++++|+||+|....-.+ .+-++|. +.++++++....
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i-------------~~gv~yvDts~~ 101 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACI-------------KTGVDYVDTSYY 101 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHH-------------HhCCCEEEcccC
Confidence 54 357899999999998876665 4555665 467777776543
No 62
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.75 E-value=0.00019 Score=64.22 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=86.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHH---hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIAL---MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal---~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
-.-.|.++|||-+|--++-+|.. -|..+|.++|..+|+..|+---- --.-+|.+|++-++ ++.+..+.-.|++.
T Consensus 17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr--~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~ 93 (217)
T COG4015 17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRR--LGAKVGEYKVDFIK-RLGRVHFGRRVEAF 93 (217)
T ss_pred CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHH--hCCCcchhHHHHHH-HhCcCCCCceeecc
Confidence 34579999999999999999985 48889999999999999985332 24578999998654 45555677899999
Q ss_pred ecccCCCchhhhccccEEEecc---CcHHHHHHHHHHHH
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGL---DSIVARRWINGMLL 156 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~---Dn~~~r~~in~~~~ 156 (478)
...+...+..++++ |+|+.|. |....-..|-..|+
T Consensus 94 pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~ 131 (217)
T COG4015 94 PENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAK 131 (217)
T ss_pred cccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHH
Confidence 99999888888877 8877663 66666666666776
No 63
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.40 E-value=0.00078 Score=63.89 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=59.7
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|++++|+|||.|.+|...++.|..+| .+|++|+.+. . +.+.++.+.-.+.....
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------------------~~l~~l~~~~~i~~~~~ 61 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------------------ENLVKLVEEGKIRWKQK 61 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------------------HHHHHHHhCCCEEEEec
Confidence 58999999999999999999999999 6899996431 0 11111111122333222
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
.+....+.++|+||.|+++.+.-..|...|.
T Consensus 62 ---~~~~~~l~~adlViaaT~d~elN~~i~~~a~ 92 (202)
T PRK06718 62 ---EFEPSDIVDAFLVIAATNDPRVNEQVKEDLP 92 (202)
T ss_pred ---CCChhhcCCceEEEEcCCCHHHHHHHHHHHH
Confidence 2334457899999999999988888877774
No 64
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.33 E-value=0.00095 Score=66.84 Aligned_cols=83 Identities=24% Similarity=0.238 Sum_probs=57.3
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+++++|+|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+++.+.+..+.+.+...
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~-- 185 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVY-- 185 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEe--
Confidence 35789999999999999999999999999999875310 113666677777665555444322
Q ss_pred ccCCC--chhhhccccEEEeccC
Q psy7810 123 KIQDY--DSDFYQQFHIIVCGLD 143 (478)
Q Consensus 123 ~i~~~--~~~~~~~~DlVi~~~D 143 (478)
++.+. ..+.+..+|+||+|+-
T Consensus 186 d~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 186 DLNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred chhhhhHHHhhhccCCEEEEeCC
Confidence 22221 1234567899998864
No 65
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=97.25 E-value=0.00035 Score=60.98 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccc
Q psy7810 378 ANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVEL 447 (478)
Q Consensus 378 ~~~~~~~~~~~~~~Tl~~li~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l 447 (478)
|+.|+++.++. ++||++|++++++ +|+++...|+. | ..+||.+. ..+...++|++++++|
T Consensus 31 ~T~WDr~~v~~-~~Tl~~li~~~~~--~~~lev~ml~~---g-~~~LY~~f---~~~~~~~rl~~~i~el 90 (125)
T PF09358_consen 31 WTLWDRIEVNG-DMTLQELIDYFKE--KYGLEVTMLSQ---G-VSLLYSSF---PPPKHKERLKMPISEL 90 (125)
T ss_dssp ETTT-EEEEES---BHHHHHHHHHH--TTS-EEEEEEE---T-TEEEEETT----HHHHHHHTTSBHHHH
T ss_pred ccceeEEEEcC-CCCHHHHHHHHHH--HhCceEEEEEe---C-CEEEEecC---ChhhhHHHhCCcHHHH
Confidence 78899999998 6799999999998 89988544443 2 68999764 2456789999999999
No 66
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.24 E-value=0.00082 Score=56.56 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|++.+|+|||.|.+|..=++.|..+| .+++++..+. +.. . ..+++ ...
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~---------------------~-------~~i~~--~~~ 52 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFS---------------------E-------GLIQL--IRR 52 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHH---------------------H-------TSCEE--EES
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhh---------------------h-------hHHHH--Hhh
Confidence 58999999999999999999999999 6999998765 000 0 12232 222
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
.+ . +.+.++++|+.|+++.+....+-..|+
T Consensus 53 ~~---~-~~l~~~~lV~~at~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 53 EF---E-EDLDGADLVFAATDDPELNEAIYADAR 82 (103)
T ss_dssp S----G-GGCTTESEEEE-SS-HHHHHHHHHHHH
T ss_pred hH---H-HHHhhheEEEecCCCHHHHHHHHHHHh
Confidence 22 2 447889999999999998888888887
No 67
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.21 E-value=0.0011 Score=66.08 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=55.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
++++|+|+|+||.|..++..|+..|+.+|+|+|.+. .|++.+++.+....+...+... .
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~--~ 184 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGV--D 184 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEec--C
Confidence 567999999999999999999999999999997542 3888888877654443222221 1
Q ss_pred cCCCchhhhccccEEEeccC
Q psy7810 124 IQDYDSDFYQQFHIIVCGLD 143 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~D 143 (478)
... ..+....+|+||+|+.
T Consensus 185 ~~~-~~~~~~~~divINaTp 203 (283)
T PRK14027 185 ARG-IEDVIAAADGVVNATP 203 (283)
T ss_pred HhH-HHHHHhhcCEEEEcCC
Confidence 111 1223467999999874
No 68
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.21 E-value=0.0044 Score=58.88 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=61.9
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|++++|+|||.|.+|..-++.|...|. ++++++.+.- ..+. .+.+. -+|+.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~-~l~~~---~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELT-LLAEQ---GGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHH-HHHHc---CCEEEEeC
Confidence 578999999999999999999999995 8999986421 0011 11111 24444444
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
. +..+.+.++++||.|+++.+....+-..|.
T Consensus 61 ~---~~~~dl~~~~lVi~at~d~~ln~~i~~~a~ 91 (205)
T TIGR01470 61 C---FDADILEGAFLVIAATDDEELNRRVAHAAR 91 (205)
T ss_pred C---CCHHHhCCcEEEEECCCCHHHHHHHHHHHH
Confidence 3 334567899999999999888788888886
No 69
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.06 E-value=0.0017 Score=64.84 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=53.4
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+++++|+|+|+||.|..++..|+..|+++|+|++.+ ..|++.+++.+.... .+.....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceeccc
Confidence 357899999999999999999999999999998643 247777776654321 1111110
Q ss_pred ccCCCchhhhccccEEEeccC
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLD 143 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~D 143 (478)
. +.......++|+||+|+-
T Consensus 181 -~-~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 -D-SGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred -h-hhhhhcccCCCEEEECCC
Confidence 0 111234568999999975
No 70
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.06 E-value=0.0036 Score=56.89 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=58.3
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|++.+|+|||.|.+|...++.|...|. ++++|+.+..+ .+.++ +.+. ....
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~i~--~~~~ 61 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PYIT--WKQK 61 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cCcE--EEec
Confidence 589999999999999999999999996 89999654221 11111 1122 2222
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
.+..+.+.++|+||.++|+.+.-..+-..|.
T Consensus 62 ---~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 62 ---TFSNDDIKDAHLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred ---ccChhcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 2334457899999999999887777777775
No 71
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.98 E-value=0.0033 Score=62.93 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=55.3
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+++++|+|+|+||.+..++-.|+..|+++|+|++.+. + ...|++.+++.+....+ ..+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~---------------~-~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---------------E-FFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc---------------c-HHHHHHHHHHHhhhccC-ceEEEec-
Confidence 3678999999999999999999999999999987431 0 23577878777754332 2222221
Q ss_pred ccCCC--chhhhccccEEEeccC
Q psy7810 123 KIQDY--DSDFYQQFHIIVCGLD 143 (478)
Q Consensus 123 ~i~~~--~~~~~~~~DlVi~~~D 143 (478)
..+. ..+-+.++|+||+|+-
T Consensus 184 -~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcccCCEEEECCC
Confidence 1110 0123467899999864
No 72
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.95 E-value=0.0028 Score=66.02 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=62.2
Q ss_pred EEEECCchHHHHHHHHHHHhCC-CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 48 VLIIGAGGLGCELLKDIALMGF-NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 48 VlvvG~GglG~eiaknLal~Gv-g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
|+|+|+|.+|..+++.|+..+- .++++.|.+. .|++.+++.+ ...++.....++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 7999999999999999999974 4899988554 2333333333 34466666666654
Q ss_pred Cc--hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEe
Q psy7810 127 YD--SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDG 178 (478)
Q Consensus 127 ~~--~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~ 178 (478)
.. .++++++|+||+|.... ....+-++|. +.++++++.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i-------------~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACI-------------EAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHH-------------HHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHH-------------HhCCCeecc
Confidence 43 57899999999999876 4456777776 467888884
No 73
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.89 E-value=0.0017 Score=67.58 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=58.0
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|.+++|+|||+|-.|.-+|++|...|+..|+|. ||++- ||+.+++.+. ..+...
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~e---------rA~~La~~~~-----~~~~~l-- 229 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTLE---------RAEELAKKLG-----AEAVAL-- 229 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCHH---------HHHHHHHHhC-----CeeecH--
Confidence 578899999999999999999999999999995 66643 7777777666 222211
Q ss_pred ccCCCchhhhccccEEEeccCcHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIV 146 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~ 146 (478)
+...+++..+|+||.|+..+.
T Consensus 230 ---~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 230 ---EELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ---HHHHHhhhhCCEEEEecCCCc
Confidence 123567899999999987643
No 74
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.88 E-value=0.0034 Score=62.44 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=53.4
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+.+++|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ .
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~- 176 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D- 176 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c-
Confidence 467899999999999999999999999999998753 1356666666543321 222 0
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
. ...+.+.++|+||+|+-.
T Consensus 177 -~--~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 177 -L--ELQEELADFDLIINATSA 195 (278)
T ss_pred -c--cchhccccCCEEEECCcC
Confidence 0 112456789999999753
No 75
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.0092 Score=63.83 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=82.5
Q ss_pred hhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCC
Q psy7810 16 KWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQK 94 (478)
Q Consensus 16 r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~ 94 (478)
|--.+++|++|++. .+..+.....+.+++|+|-|+ |++|+|+++.++..+.++|.++|.|..
T Consensus 224 reI~ieDLLgR~pV---~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~-------------- 286 (588)
T COG1086 224 REIEIEDLLGRPPV---ALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY-------------- 286 (588)
T ss_pred ccCCHHHHhCCCCC---CCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH--------------
Confidence 33467888988764 334555677889999999985 569999999999999999999987763
Q ss_pred ccCchHHHHHHHHHHhhCCCCeEEEEecccCCCc--hhhhcc--ccEEEec
Q psy7810 95 DIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD--SDFYQQ--FHIIVCG 141 (478)
Q Consensus 95 diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~~--~~~~~~--~DlVi~~ 141 (478)
|-......+++..|..++..+-+++.+.. ...+++ .|+|+-|
T Consensus 287 -----~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 287 -----KLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred -----HHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 44456778888889999999999988764 566777 8999865
No 76
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0056 Score=60.96 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=55.5
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.+++|+|+|+||.+-.++..|+..|+.+|+|++... .|++.+++.+.+..+.+.....
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~-------------------~ra~~La~~~~~~~~~~~~~~~--- 182 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR-------------------ERAEELADLFGELGAAVEAAAL--- 182 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHhhhcccccccccc---
Confidence 478999999999999999999999999999975332 4788888888877652222111
Q ss_pred cCCCchhhhccccEEEeccCc
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn 144 (478)
.+. +-..++|+||+|+.-
T Consensus 183 -~~~--~~~~~~dliINaTp~ 200 (283)
T COG0169 183 -ADL--EGLEEADLLINATPV 200 (283)
T ss_pred -ccc--ccccccCEEEECCCC
Confidence 111 111179999999763
No 77
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.75 E-value=0.0032 Score=66.20 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=53.2
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+.+++|+|||+||.|..++++|...|+.+|+|+... ..||+.+++.+. ...+..+
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~~-- 233 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHYL-- 233 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEecH--
Confidence 478999999999999999999999999999997532 125555555432 1221111
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.+.++|+||+|+..
T Consensus 234 ---~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 234 ---SELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ---HHHHHHhccCCEEEECcCC
Confidence 1124668899999999875
No 78
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.65 E-value=0.015 Score=55.76 Aligned_cols=85 Identities=21% Similarity=0.123 Sum_probs=61.5
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+++.+|||||.|.++..=++.|..+| .+||||-.+.- ..++++...-+|+....
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~-------------------------~el~~l~~~~~i~~~~r 76 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFS-------------------------KEFLDLKKYGNLKLIKG 76 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCC-------------------------HHHHHHHhCCCEEEEeC
Confidence 46889999999999999999999999 57999865521 11111111123444443
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
++..+.+.++++||.|+|+.+.-..|...|.
T Consensus 77 ---~~~~~dl~g~~LViaATdD~~vN~~I~~~a~ 107 (223)
T PRK05562 77 ---NYDKEFIKDKHLIVIATDDEKLNNKIRKHCD 107 (223)
T ss_pred ---CCChHHhCCCcEEEECCCCHHHHHHHHHHHH
Confidence 3445567899999999999999888888886
No 79
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.41 E-value=0.014 Score=54.62 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=54.2
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
+++++|+|+|+ |++|..+++.|+..| .++++++.+ ..|++..++.+.+.. ...+...
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~- 83 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV- 83 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe-
Confidence 47889999996 999999999999988 489998643 235666666665332 3333322
Q ss_pred cccCCC--chhhhccccEEEeccCc
Q psy7810 122 CKIQDY--DSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 122 ~~i~~~--~~~~~~~~DlVi~~~Dn 144 (478)
+..+. ..+.++++|+||.++..
T Consensus 84 -~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 -ETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred -eCCCHHHHHHHHhcCCEEEECCCC
Confidence 12221 13567899999998754
No 80
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.35 E-value=0.0073 Score=55.53 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=30.6
Q ss_pred hcCCeEEEECCchH-HHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGAGGL-GCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~Ggl-G~eiaknLal~Gvg~i~iiD~ 77 (478)
|.+++|+|||+|.. |..++++|...|+ ++++++.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 58999999999985 8889999999998 6999884
No 81
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.22 E-value=0.018 Score=51.46 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.6
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|+|+|++|..+++.|...|...++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 357899999999999999999999987789998743
No 82
>PRK04148 hypothetical protein; Provisional
Probab=96.11 E-value=0.052 Score=47.87 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=65.5
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
++.+|++||+| -|.++|..|+..|. .++.+|.+.- .+ +.+++. .+.+...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV----~~a~~~----~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AV----EKAKKL----GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HH----HHHHHh----CCeEEECc
Confidence 45789999999 99999999999996 8999985431 12 222222 24566777
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
+-+.+.++++++|+|-...-..+....+-+.+.
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~ 99 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAK 99 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHH
Confidence 777788999999999999988888888888886
No 83
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.03 E-value=0.03 Score=51.00 Aligned_cols=32 Identities=31% Similarity=0.637 Sum_probs=26.7
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+|.+||+|-.|+.++++|+.+|+ ++++.|.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccc
Confidence 489999999999999999999997 68888844
No 84
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.00 E-value=0.024 Score=57.21 Aligned_cols=73 Identities=29% Similarity=0.376 Sum_probs=51.0
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC----CCeEEEE
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP----GVKVIPH 120 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg-~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np----~v~i~~~ 120 (478)
+||.|||+|++|+.++..|+..|+. +|.++|.+. .|++..+..+....+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3899999999999999999999985 899998542 244555555544431 222221
Q ss_pred ecccCCCchhhhccccEEEeccCc
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
. +.+-++++|+||.+...
T Consensus 61 -~-----~~~~l~~aDIVIitag~ 78 (306)
T cd05291 61 -G-----DYSDCKDADIVVITAGA 78 (306)
T ss_pred -C-----CHHHhCCCCEEEEccCC
Confidence 1 22236899999998765
No 85
>KOG4169|consensus
Probab=95.99 E-value=0.017 Score=55.07 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=60.2
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
+++++++++| +||||-+++|.|...|+..+.|.|.- +| -.+..+|++.||.+++.-+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 4688888885 99999999999999999888776521 11 34667899999999999999
Q ss_pred cccCCCc--h-------hhhccccEEEec
Q psy7810 122 CKIQDYD--S-------DFYQQFHIIVCG 141 (478)
Q Consensus 122 ~~i~~~~--~-------~~~~~~DlVi~~ 141 (478)
.++.+.. . .-|...|++|+.
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 9887521 1 224567999985
No 86
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.96 E-value=0.035 Score=49.47 Aligned_cols=74 Identities=31% Similarity=0.319 Sum_probs=51.9
Q ss_pred eEEEECC-chHHHHHHHHHHHhCCC-eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC--eEEEEec
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGV--KVIPHFC 122 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gvg-~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v--~i~~~~~ 122 (478)
||.|||+ |.+|+.++-.|+..|+. +|.|+|.+. .|++.-+.-++...+.. .+....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc-
Confidence 8999999 99999999999999985 599998432 25555555555543333 333322
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
...+-+++.|+||.+...
T Consensus 62 ----~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 ----GDYEALKDADIVVITAGV 79 (141)
T ss_dssp ----SSGGGGTTESEEEETTST
T ss_pred ----ccccccccccEEEEeccc
Confidence 233457899999987544
No 87
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.92 E-value=0.011 Score=57.06 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=34.6
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCc
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg--~i~iiD~D~ 79 (478)
+++.+|+|+|+||.|..+++.|+..|++ +|+|+|.+-
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 5788999999999999999999999999 999999873
No 88
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.035 Score=58.95 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=32.4
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|+|+|++|.++|+.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 468999999999999999999999996 799998754
No 89
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.87 E-value=0.026 Score=55.97 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=31.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++|+|+|+||.+..++..|...|+.+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999998754
No 90
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.81 E-value=0.032 Score=50.51 Aligned_cols=91 Identities=22% Similarity=0.286 Sum_probs=54.5
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
||.|+|+|..|+.+|..|+..| .+++|...+.=....++.+-. -....|++++.. .-.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~-----------------n~~~~~~~~l~~-~i~~t~ 61 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ-----------------NPKYLPGIKLPE-NIKATT 61 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS-----------------ETTTSTTSBEET-TEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC-----------------CCCCCCCcccCc-cccccc
Confidence 7999999999999999999999 678888766511111111000 000123333322 111223
Q ss_pred CchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 127 YDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 127 ~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
...+.+++.|+||.++-...-+..+.++..
T Consensus 62 dl~~a~~~ad~IiiavPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 62 DLEEALEDADIIIIAVPSQAHREVLEQLAP 91 (157)
T ss_dssp SHHHHHTT-SEEEE-S-GGGHHHHHHHHTT
T ss_pred CHHHHhCcccEEEecccHHHHHHHHHHHhh
Confidence 345678999999999998877776666553
No 91
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.74 E-value=0.045 Score=55.68 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=32.7
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++..||.|||+|.+|+.++..++..|+..|.|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4668999999999999999999999987799998543
No 92
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.72 E-value=0.034 Score=56.28 Aligned_cols=76 Identities=26% Similarity=0.360 Sum_probs=53.8
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+.+.+|+|+|+|.+|..++++|...|...|+++|.+. .|+..+++.+. . .+...
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-- 229 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG----G-NAVPL-- 229 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-eEEeH--
Confidence 4689999999999999999999998999999987543 34444443331 1 21111
Q ss_pred ccCCCchhhhccccEEEeccCcHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVA 147 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~ 147 (478)
+...+.+.++|+||.|+.+...
T Consensus 230 ---~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 230 ---DELLELLNEADVVISATGAPHY 251 (311)
T ss_pred ---HHHHHHHhcCCEEEECCCCCch
Confidence 1123456789999999987666
No 93
>PLN00203 glutamyl-tRNA reductase
Probab=95.71 E-value=0.036 Score=59.93 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=52.5
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|.+++|+|||+|++|..++++|...|+.+|++++.+. .|++.+++.+ +.+.+.....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~-------------------era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE-------------------ERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHh----CCCceEeecH
Confidence 4579999999999999999999999999999976431 2444444332 2333322111
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.+.++|+||.|+..
T Consensus 321 ---~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 321 ---DEMLACAAEADVVFTSTSS 339 (519)
T ss_pred ---hhHHHHHhcCCEEEEccCC
Confidence 1224567899999999754
No 94
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.69 E-value=0.035 Score=56.33 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=52.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC-eEEEEe
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGV-KVIPHF 121 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg-~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v-~i~~~~ 121 (478)
+..||.|||+|.+|+.++..|+..|+. .|.|+|-+ ..|++..+.-+....|.. ++....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~-------------------~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN-------------------KEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CchhHHHHHHHHhhccccCCeEEEe
Confidence 467999999999999999999999985 79999842 234555555555554432 222222
Q ss_pred cccCCCchhhhccccEEEeccC
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLD 143 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~D 143 (478)
. +.+-++++|+||.+..
T Consensus 66 ~-----~~~~~~~adivIitag 82 (315)
T PRK00066 66 G-----DYSDCKDADLVVITAG 82 (315)
T ss_pred C-----CHHHhCCCCEEEEecC
Confidence 1 2234789999998644
No 95
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.073 Score=51.32 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=54.6
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQ 125 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~ 125 (478)
.+++|+|+|-+|..+|+.|+..|- ++++||.|.- .+.+.+.+ .....++..+-.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE----------------------RVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH----------------------HHHHHhhh---hcceEEEEecCC
Confidence 479999999999999999999995 6888886641 11222221 123334444332
Q ss_pred CCc---hhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 126 DYD---SDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 126 ~~~---~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
+.. ..-+..+|++|.++++...-..+-.++.
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~ 88 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLAL 88 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHH
Confidence 221 1226789999999988666555555554
No 96
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.47 E-value=0.02 Score=57.26 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=30.0
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+|.|||+|..|+.+|.+|+++|+ .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 799999654
No 97
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.41 E-value=0.035 Score=52.92 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=60.0
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|.+++|+|||.|.+|.-=++.|..+|. +++++-.+. + ......+.+ + ++....
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~--------------------~el~~~~~~-~---~i~~~~- 62 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-E--------------------PELKALIEE-G---KIKWIE- 62 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-c--------------------HHHHHHHHh-c---Ccchhh-
Confidence 588999999999999999999999994 788875443 1 011111111 1 122222
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
..+..+.+..+++||.|+|+.+.-..+-+.|.
T Consensus 63 --~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~ 94 (210)
T COG1648 63 --REFDAEDLDDAFLVIAATDDEELNERIAKAAR 94 (210)
T ss_pred --cccChhhhcCceEEEEeCCCHHHHHHHHHHHH
Confidence 24455566679999999999998888888887
No 98
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.40 E-value=0.056 Score=54.65 Aligned_cols=74 Identities=27% Similarity=0.319 Sum_probs=50.3
Q ss_pred eEEEECCchHHHHHHHHHHHhCC-CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC---CCeEEEEec
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGF-NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP---GVKVIPHFC 122 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gv-g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np---~v~i~~~~~ 122 (478)
||.|||+|.+|+.+|..|+..|+ ++|.|+|-. +.|++.-+.-|....+ ..+++.+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN-------------------EGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999998 579999831 2345444555555333 222333322
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+.+-++++|+||.+...
T Consensus 62 -----~y~~~~~aDivvitaG~ 78 (307)
T cd05290 62 -----DYDDCADADIIVITAGP 78 (307)
T ss_pred -----CHHHhCCCCEEEECCCC
Confidence 23457899999987543
No 99
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.37 E-value=0.036 Score=58.57 Aligned_cols=75 Identities=27% Similarity=0.319 Sum_probs=51.7
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.+. .|+..+++.+. ..+...
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g-----~~~~~~-- 233 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG-----GEAIPL-- 233 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC-----CcEeeH--
Confidence 5789999999999999999999999999999987542 24433333321 111111
Q ss_pred ccCCCchhhhccccEEEeccCcHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIV 146 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~ 146 (478)
+...+.+.++|+||.|+....
T Consensus 234 ---~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 234 ---DELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ---HHHHHHhccCCEEEECCCCCC
Confidence 112345678999999986543
No 100
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.36 E-value=0.067 Score=54.37 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.9
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++|.|||+|-+|+.+|.+++.+|+ .++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 589999999999999999999997 699999654
No 101
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.23 E-value=0.062 Score=53.15 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=49.5
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.+++|+|+|+||+|..++..|+..|. +++++|.+ ..|++.+++.+... +. +....
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~-~~--~~~~~-- 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRY-GE--IQAFS-- 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhc-Cc--eEEec--
Confidence 46789999999999999999999996 89998742 23666666665442 11 11111
Q ss_pred cCCCchhhhccccEEEeccCc
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn 144 (478)
. ......++|+||+|+..
T Consensus 171 ~---~~~~~~~~DivInatp~ 188 (270)
T TIGR00507 171 M---DELPLHRVDLIINATSA 188 (270)
T ss_pred h---hhhcccCccEEEECCCC
Confidence 1 11123578999999754
No 102
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.22 E-value=0.041 Score=43.68 Aligned_cols=59 Identities=29% Similarity=0.532 Sum_probs=42.2
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEE
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIP 119 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~ 119 (478)
||+|||.|-+|+|+|..|...|. ++||++...- + . ...+..=+..+.+.+++. ++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~-~-~~~~~~~~~~~~~~l~~~--gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------L-L-PGFDPDAAKILEEYLRKR--GVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------S-S-TTSSHHHHHHHHHHHHHT--TEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------h-h-hhcCHHHHHHHHHHHHHC--CCEEEe
Confidence 69999999999999999999995 8999886542 1 1 233444455666777776 455443
No 103
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.20 E-value=0.098 Score=52.34 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=29.7
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~ 49 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN 49 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4788999998 58999999999999997 67777653
No 104
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.16 E-value=0.1 Score=52.60 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=43.3
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
|++++++|.| .||||.++++.|+..|. ++.+++.+. .|++.+.+.+.+.+|..++..+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~~ 71 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLRA 71 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEEE
Confidence 4678899998 67999999999999996 677776432 24444555555555555555555
Q ss_pred cccC
Q psy7810 122 CKIQ 125 (478)
Q Consensus 122 ~~i~ 125 (478)
.++.
T Consensus 72 ~Dl~ 75 (313)
T PRK05854 72 LDLS 75 (313)
T ss_pred ecCC
Confidence 5544
No 105
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.14 E-value=0.076 Score=56.93 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=35.1
Q ss_pred ChHHHHHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 35 SSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 35 G~e~~~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+.+...+...+|+|+|+|++|.++|..|...|. +++++|..
T Consensus 6 ~~~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 6 GLTSWHSDWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred chhhcccCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 44443334567899999999999999999999997 69999854
No 106
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.13 E-value=0.18 Score=43.48 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=57.0
Q ss_pred eEEEEC-CchHHHHHHHHHHHhC-CCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMG-FNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~G-vg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
||.||| .|-+|.++++.|...- +.-+.++.... ..|+.=+.... .....-.+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~---- 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVE---- 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEE----
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCeeehhcc----ccccccceeEe----
Confidence 799999 8999999999999842 22333333221 24443222111 11111122221
Q ss_pred CCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEee
Q psy7810 125 QDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGG 179 (478)
Q Consensus 125 ~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g 179 (478)
+...+.+.+.|+|+.|+++..++.+..... +.++++|+.+
T Consensus 58 -~~~~~~~~~~Dvvf~a~~~~~~~~~~~~~~--------------~~g~~ViD~s 97 (121)
T PF01118_consen 58 -DADPEELSDVDVVFLALPHGASKELAPKLL--------------KAGIKVIDLS 97 (121)
T ss_dssp -ETSGHHHTTESEEEE-SCHHHHHHHHHHHH--------------HTTSEEEESS
T ss_pred -ecchhHhhcCCEEEecCchhHHHHHHHHHh--------------hCCcEEEeCC
Confidence 233444689999999999988888888775 3577888754
No 107
>KOG0069|consensus
Probab=95.13 E-value=0.091 Score=53.36 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=62.5
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.+++++|.|+|+|+||..+|+.|...| ..|.--. |+ -..+ +.+. +.+..
T Consensus 159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~----------r~-------~~~~--~~~~----~~~~~------- 207 (336)
T KOG0069|consen 159 DLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHS----------RT-------QLPP--EEAY----EYYAE------- 207 (336)
T ss_pred cccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeec----------cc-------CCch--hhHH----Hhccc-------
Confidence 358999999999999999999999855 3333211 11 0111 1111 11111
Q ss_pred cccCCCchhhhccccEEEec-cCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeece
Q psy7810 122 CKIQDYDSDFYQQFHIIVCG-LDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGF 183 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~-~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~ 183 (478)
....++++.++|+|+.| -.+.+++..+|+...... +.+.-+++.+-.+.
T Consensus 208 ---~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~m----------k~g~vlVN~aRG~i 257 (336)
T KOG0069|consen 208 ---FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKM----------KDGAVLVNTARGAI 257 (336)
T ss_pred ---ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhc----------CCCeEEEecccccc
Confidence 12236788899987765 588999999998766432 45677777765444
No 108
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.01 E-value=0.18 Score=51.13 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=62.8
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.+++++|.|||+|.+|.++++.|...|+ ++..+|... + .. +.+. ...
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~-----~~-----------------~~~~--~~~ 179 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K-----SW-----------------PGVQ--SFA 179 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C-----CC-----------------CCce--eec
Confidence 3588999999999999999999998887 677777421 0 00 0110 000
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
. ....+++++++|+|+.++ .+.+++..+|+.....+ +.+.-+|+.+-.
T Consensus 180 -~-~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~m----------k~ga~lIN~aRG 228 (312)
T PRK15469 180 -G-REELSAFLSQTRVLINLLPNTPETVGIINQQLLEQL----------PDGAYLLNLARG 228 (312)
T ss_pred -c-cccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcC----------CCCcEEEECCCc
Confidence 0 112357889999999986 56788888886544321 345567776643
No 109
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.00 E-value=0.19 Score=51.39 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=62.3
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|++++|.|||+|.+|..+|+.|...|. ++..+|...- +. ... +.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~---~~~-------~~----- 187 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KD---LDF-------LT----- 187 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hh---hhh-------hh-----
Confidence 4689999999999999999999998886 6888885420 00 000 00
Q ss_pred cccCCCchhhhccccEEEeccCc-HHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLDS-IVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~Dn-~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
......+.++++|+|+.++-. .+++..+++...... +.+.-+|+.+-.
T Consensus 188 --~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~m----------k~gavlIN~aRG 236 (330)
T PRK12480 188 --YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHV----------KKGAILVNAARG 236 (330)
T ss_pred --ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcC----------CCCcEEEEcCCc
Confidence 111235678999999998754 557777776554322 345667776643
No 110
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.078 Score=52.94 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=31.3
Q ss_pred hcCCeEEEECCch-HHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGAGG-LGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~Gg-lG~eiaknLal~Gvg~i~iiD~ 77 (478)
+++++|+|+|.|+ +|..++..|...|. .+++.+.
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 5789999999999 99999999999998 9999873
No 111
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.90 E-value=0.14 Score=59.54 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=52.5
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCC-C------------eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHh
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGF-N------------EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINS 110 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gv-g------------~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~ 110 (478)
+.++|+|+|+|.+|..++++|+..+- . .++|.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 46799999999999999999987642 2 24444422 2344433332
Q ss_pred hCCCCeEEEEecccCCC--chhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 111 RIPGVKVIPHFCKIQDY--DSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 111 ~np~v~i~~~~~~i~~~--~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
.|+++ +...++.+. -.++++++|+||.|+-. .....+...|.
T Consensus 626 -~~~~~--~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAi 669 (1042)
T PLN02819 626 -IENAE--AVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACI 669 (1042)
T ss_pred -cCCCc--eEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHH
Confidence 34432 222223332 23455789999999876 33455556665
No 112
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.87 E-value=0.056 Score=46.99 Aligned_cols=98 Identities=26% Similarity=0.306 Sum_probs=56.9
Q ss_pred eEEEECC-chHHHHHHHHHHH-hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 47 KVLIIGA-GGLGCELLKDIAL-MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal-~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
||.|+|+ |-.|.++++.+.. .|+.=.-.+|... +. +-..|+|. .+......+. +
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~-------v 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVP-------V 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSB-------E
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchhhh--------hhCcCCcccc-------c
Confidence 7999999 9999999999998 5665556666443 11 11234441 1111111122 2
Q ss_pred CCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeece
Q psy7810 125 QDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGF 183 (478)
Q Consensus 125 ~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~ 183 (478)
.+...+.+..+|+||+.+ ++++-...-+.|. ++++|+|.+-| |+
T Consensus 58 ~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~-------------~~g~~~ViGTT-G~ 101 (124)
T PF01113_consen 58 TDDLEELLEEADVVIDFT-NPDAVYDNLEYAL-------------KHGVPLVIGTT-GF 101 (124)
T ss_dssp BS-HHHHTTH-SEEEEES--HHHHHHHHHHHH-------------HHT-EEEEE-S-SS
T ss_pred chhHHHhcccCCEEEEcC-ChHHhHHHHHHHH-------------hCCCCEEEECC-CC
Confidence 233466777899999998 5555555555555 46899887543 44
No 113
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.73 E-value=0.059 Score=43.57 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=33.4
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+..++++|+|+|+.|..++..|...|...++++|.|
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 578999999999999999999999988899999883
No 114
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=94.72 E-value=0.037 Score=44.40 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=33.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEe
Q psy7810 381 PKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVA 458 (478)
Q Consensus 381 ~~~~~~~~~~~Tl~~li~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~ 458 (478)
-.+++++++. |+++|.+.+.+ .+++...+.+ ||... ...++-..+..++|+++|+++|++|++.
T Consensus 15 ~~Rie~~~~~-t~~~L~~kI~~--~l~~~~~~~~---------L~~~~--~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 15 MKRIEVSPSS-TLSDLKEKISE--QLSIPDSSQS---------LSKDR--NNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp EEEEEE-TTS-BHHHHHHHHHH--HS---TTT------------BSSG--GGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CEEEEcCCcc-cHHHHHHHHHH--HcCCCCcceE---------EEecC--CCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3567888887 99999999988 7776654433 33221 1111122345799999999999999864
No 115
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.17 Score=49.27 Aligned_cols=64 Identities=16% Similarity=0.373 Sum_probs=45.9
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
++++.++|.|+ ||||.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..|..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 46789999985 7999999999999997 577877542 24444556666666666666666
Q ss_pred cccCC
Q psy7810 122 CKIQD 126 (478)
Q Consensus 122 ~~i~~ 126 (478)
.++.+
T Consensus 66 ~D~~~ 70 (265)
T PRK07062 66 CDVLD 70 (265)
T ss_pred ecCCC
Confidence 55543
No 116
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.67 E-value=0.27 Score=52.56 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=62.1
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|++++|+|||.|.++..=++.|..+|. +|++|-.+. . +.+.++...-+|+....
T Consensus 10 l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~~ 63 (457)
T PRK10637 10 LRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVEG 63 (457)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEeC
Confidence 589999999999999999999999995 799984431 1 11112211223444443
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLS 157 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~ 157 (478)
. +..+.++++++||.|+|+.+.-..|-..|..
T Consensus 64 ~---~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~ 95 (457)
T PRK10637 64 P---FDESLLDTCWLAIAATDDDAVNQRVSEAAEA 95 (457)
T ss_pred C---CChHHhCCCEEEEECCCCHHHhHHHHHHHHH
Confidence 3 3456678999999999999988888888863
No 117
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.64 E-value=0.15 Score=51.69 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=54.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIAL-MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal-~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
..++|+|||+|+.|..+++.+.+ .|+.+|++++.+ ..|++..++.+++. ...+.+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~--g~~~~~~-- 180 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQ--GFDAEVV-- 180 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhc--CCceEEe--
Confidence 56899999999999999997775 688899997643 35777777777654 2223321
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.++++|+|++|+.+
T Consensus 181 ---~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 ---TDLEAAVRQADIISCATLS 199 (314)
T ss_pred ---CCHHHHHhcCCEEEEeeCC
Confidence 2234567899999999875
No 118
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.21 Score=48.42 Aligned_cols=64 Identities=27% Similarity=0.421 Sum_probs=44.5
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
|.+++|+|.| .||||.++++.|+..|. ++.++|.+ ..+.+.+++.+.+.++..++..+.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 64 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAVP 64 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEEE
Confidence 4788999998 57999999999999997 57777632 224445555565544455566666
Q ss_pred cccCC
Q psy7810 122 CKIQD 126 (478)
Q Consensus 122 ~~i~~ 126 (478)
.++.+
T Consensus 65 ~Dl~~ 69 (260)
T PRK07063 65 ADVTD 69 (260)
T ss_pred ccCCC
Confidence 55543
No 119
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.56 E-value=0.1 Score=53.28 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=64.0
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|++++|.|||+|.+|.++|+.|...|. ++..+|...- + ... ... .+.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~-------------------~-~~~----~~~--~~~----- 194 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK-------------------P-EAE----KEL--GAE----- 194 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC-------------------h-hhH----HHc--CCE-----
Confidence 3689999999999999999999998887 6777775210 0 000 011 111
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeece
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGF 183 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~ 183 (478)
. ....++++++|+|+.++ .+.+++..+++.....+ +.+--+|+.+..+.
T Consensus 195 --~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~m----------k~ga~lIN~aRg~~ 244 (333)
T PRK13243 195 --Y-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLM----------KPTAILVNTARGKV 244 (333)
T ss_pred --e-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcC----------CCCeEEEECcCchh
Confidence 0 12356788999999987 45678888876544322 34566777765443
No 120
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.52 E-value=0.081 Score=52.82 Aligned_cols=75 Identities=27% Similarity=0.564 Sum_probs=46.1
Q ss_pred EEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCC--Ce--EEEEec
Q psy7810 48 VLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPG--VK--VIPHFC 122 (478)
Q Consensus 48 VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~--v~--i~~~~~ 122 (478)
|||.| +|.+|+|+++.|+..|..+|.++|.|.-.+.++.+ .+++..|+ ++ +.+..+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~-------------------~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELER-------------------ELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHH-------------------HCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHH-------------------HHhhcccccCcccccCceee
Confidence 68887 78899999999999999999999988755444433 34444333 42 334455
Q ss_pred ccCCCc--hhhhc--cccEEEec
Q psy7810 123 KIQDYD--SDFYQ--QFHIIVCG 141 (478)
Q Consensus 123 ~i~~~~--~~~~~--~~DlVi~~ 141 (478)
++.+.. ...++ +.|+|+-+
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE-
T ss_pred cccCHHHHHHHHhhcCCCEEEEC
Confidence 555432 34456 77888865
No 121
>PLN02602 lactate dehydrogenase
Probab=94.49 E-value=0.18 Score=51.91 Aligned_cols=74 Identities=15% Similarity=0.273 Sum_probs=50.6
Q ss_pred CeEEEECCchHHHHHHHHHHHhCC-CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC---CCeEEEEe
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGF-NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP---GVKVIPHF 121 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gv-g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np---~v~i~~~~ 121 (478)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-+ +.|++..+.-|+...| .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 579999842 1244444444444332 2333321
Q ss_pred cccCCCchhhhccccEEEeccCc
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
.+.+.++++|+||.+...
T Consensus 98 -----~dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 98 -----TDYAVTAGSDLCIVTAGA 115 (350)
T ss_pred -----CCHHHhCCCCEEEECCCC
Confidence 123448899999987543
No 122
>PRK09242 tropinone reductase; Provisional
Probab=94.48 E-value=0.22 Score=48.21 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=55.0
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
+++++++|+|+ ||||.++++.|+..|. ++.+++.+. .+.+...+.+...+|..++..+.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~ 66 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA-------------------DALAQARDELAEEFPEREVHGLA 66 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEEEE
Confidence 57889999985 8999999999999997 688877431 23445566666666777777777
Q ss_pred cccCCCc--hh-------hhccccEEEecc
Q psy7810 122 CKIQDYD--SD-------FYQQFHIIVCGL 142 (478)
Q Consensus 122 ~~i~~~~--~~-------~~~~~DlVi~~~ 142 (478)
.++.+.. .. .+.+.|+||.+.
T Consensus 67 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 67 ADVSDDEDRRAILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 6665421 11 134567777654
No 123
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.44 E-value=0.15 Score=51.36 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
..+|.|+|+|.+|+.++++|+.+|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999996 78999876
No 124
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.23 Score=49.57 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=42.6
Q ss_pred hhhhHHHHHhhcCCCCCCC----CCChHHHHHHhcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 14 ARKWNHLRKVLERPGPFCT----SPSSEALSFLQTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 14 ~~r~~~~~~l~~r~~~f~~----~~G~e~~~~~L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
-.|..+|..+.+-..+-.. ..-++. ...+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~ 73 (293)
T PRK05866 6 LRRLTDQLTLAGMRPPISPQLLINRPPRQ-PVDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARR 73 (293)
T ss_pred HHHHHHHHHHhccCCCCCchhhcCCCCCC-CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4567777777765544332 111111 22346789999995 9999999999999996 68887653
No 125
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.40 E-value=0.71 Score=38.95 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=54.1
Q ss_pred EEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCC
Q psy7810 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDY 127 (478)
Q Consensus 48 VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~ 127 (478)
|+|+|+|.+|-++++.|...| -.++++|.|.-. .+.+++.. +....++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-----------------------~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-----------------------VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-----------------------HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-----------------------HHHHHhcc----cccccccchhh
Confidence 789999999999999999954 589999977521 23333322 22344444332
Q ss_pred c---hhhhccccEEEeccCcHHHHHHHHHHHHH
Q psy7810 128 D---SDFYQQFHIIVCGLDSIVARRWINGMLLS 157 (478)
Q Consensus 128 ~---~~~~~~~DlVi~~~Dn~~~r~~in~~~~~ 157 (478)
. ..-+++++.||.++++...-..+-..++.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 1 23367899999999887776666666654
No 126
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.37 E-value=0.23 Score=50.35 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=50.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCC---CeEEEE
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPG---VKVIPH 120 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg-~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~---v~i~~~ 120 (478)
..||.|||+|.+|+.+|..|+..|.. +|.|+|-.. .|++..+.-|....|. .+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~-------------------~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE-------------------DKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45999999999999999999999985 699998421 2455555555555432 233321
Q ss_pred ecccCCCchhhhccccEEEeccC
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGLD 143 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~D 143 (478)
.+.+-++++|+||.+..
T Consensus 64 ------~dy~~~~~adivvitaG 80 (312)
T cd05293 64 ------KDYSVTANSKVVIVTAG 80 (312)
T ss_pred ------CCHHHhCCCCEEEECCC
Confidence 12234799999998644
No 127
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.33 E-value=0.23 Score=50.57 Aligned_cols=76 Identities=24% Similarity=0.204 Sum_probs=55.4
Q ss_pred cCCeEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIA-LMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLa-l~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
..++|+|||+|+.|-..++.|. ..|+.+++|++.+. .|++..++.+.+..+ +++...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~-------------------~~a~~~a~~~~~~~g-~~v~~~-- 185 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDS-------------------AKAEALALQLSSLLG-IDVTAA-- 185 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEe--
Confidence 3568999999999999999997 57889999975332 477778877765432 344332
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.++++|+||.|+..
T Consensus 186 ---~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 186 ---TDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred ---CCHHHHhccCCEEEEecCC
Confidence 2234567899999999865
No 128
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.32 Score=46.64 Aligned_cols=62 Identities=27% Similarity=0.438 Sum_probs=44.5
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
+++|+|.| .||||.++++.|+..|. ++.+++.+. .+...+.+.+.+.+|..++..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 56799998 88999999999999995 788877532 2334445555666677777766666
Q ss_pred cCC
Q psy7810 124 IQD 126 (478)
Q Consensus 124 i~~ 126 (478)
+.+
T Consensus 62 ~~~ 64 (248)
T PRK08251 62 VND 64 (248)
T ss_pred CCC
Confidence 654
No 129
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.27 E-value=0.34 Score=48.79 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=29.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGF-NEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gv-g~i~iiD~D 78 (478)
..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4589999999999999999999997 478888754
No 130
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.23 E-value=0.21 Score=47.84 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=30.9
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~ 40 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICG 40 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 4678999999 69999999999999997 688887653
No 131
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.20 E-value=0.22 Score=50.31 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=55.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIAL-MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal-~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
..++|+|+|+|+.|...++.+.. .|+.++.+.|.+ ..|++..++.++... +.+. .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~--~~~~--~- 179 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALG--PTAE--P- 179 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcC--CeeE--E-
Confidence 56899999999999999999975 688889997644 347888888887542 2222 1
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.+.++|+||.|+-+
T Consensus 180 ---~~~~~av~~aDiVitaT~s 198 (304)
T PRK07340 180 ---LDGEAIPEAVDLVVTATTS 198 (304)
T ss_pred ---CCHHHHhhcCCEEEEccCC
Confidence 2234567899999999875
No 132
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.19 E-value=0.25 Score=47.98 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=29.2
Q ss_pred HhcCCeEEEECC-c-hHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 42 LQTSCKVLIIGA-G-GLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 42 ~L~~~~VlvvG~-G-glG~eiaknLal~Gvg~i~iiD~ 77 (478)
.+.+++|+|.|+ | |||..+++.|+..|. ++.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeC
Confidence 346789999997 5 899999999999997 4777664
No 133
>PLN02928 oxidoreductase family protein
Probab=94.10 E-value=0.19 Score=51.70 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=64.4
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE-
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH- 120 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~- 120 (478)
.|.+++|.|||+|.+|.++|+.|...|. ++..+|... . +.. ....|. + .+.+.-...
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~-~-----~~~---~~~~~~-~-----------~~~~~~~~~~ 213 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW-T-----SEP---EDGLLI-P-----------NGDVDDLVDE 213 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-C-----hhh---hhhhcc-c-----------cccccccccc
Confidence 4689999999999999999999998887 788876421 0 000 000000 0 000000000
Q ss_pred ecccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeee
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGT 180 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~ 180 (478)
... ...-+++++++|+|+.++ .+.+++..+|+.....+ +.+.-+|+.+-
T Consensus 214 ~~~-~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~M----------k~ga~lINvaR 263 (347)
T PLN02928 214 KGG-HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSM----------KKGALLVNIAR 263 (347)
T ss_pred cCc-ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcC----------CCCeEEEECCC
Confidence 001 122467899999999986 56788888887655332 34566777763
No 134
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.10 E-value=0.25 Score=50.29 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=55.3
Q ss_pred cCCeEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIA-LMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLa-l~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
..++|+|||+|+.|-..+..+. ..|+.+|.|+|.+ ..|++..++.++... .+++..+.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~- 184 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVN- 184 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeC-
Confidence 4678999999999998888875 5689999998654 246777777776543 23333321
Q ss_pred ccCCCchhhhccccEEEeccCcH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSI 145 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~ 145 (478)
...+.++++|+||.|+.+.
T Consensus 185 ----~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 185 ----SADEAIEEADIIVTVTNAK 203 (325)
T ss_pred ----CHHHHHhcCCEEEEccCCC
Confidence 1245678999999998763
No 135
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.09 E-value=0.22 Score=47.76 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=30.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|+|+ |++|.++++.|+..|.. +++++.+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNE 39 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence 46789999995 89999999999999975 88887654
No 136
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.96 E-value=0.31 Score=47.07 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=30.1
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~ 43 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD 43 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 46889999984 9999999999999997 68887754
No 137
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.91 E-value=0.079 Score=43.35 Aligned_cols=78 Identities=19% Similarity=0.341 Sum_probs=49.2
Q ss_pred eEEEECCchHHHHHHHHHHHhCC--CeEEEE-eCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGF--NEIHVI-DMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gv--g~i~ii-D~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
||.|||+|.+|..+++.|+.+|+ .++.++ +.+. .|+ +.+.+..+ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~~----~~~~~~~~-~~~~~---- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EKA----AELAKEYG-VQATA---- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HHH----HHHHHHCT-TEEES----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HHH----HHHHHhhc-ccccc----
Confidence 68999999999999999999995 345543 3221 122 23333333 22221
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
..+.+..+..|+||.|+........+...
T Consensus 53 --~~~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 53 --DDNEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp --EEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred --CChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 12456788999999999877666655555
No 138
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.86 E-value=0.22 Score=50.24 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=60.5
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|.+++|.|||+|.+|.++|+.|...|+ ++..+|.... +. .+...
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~~------------~~-------------------~~~~~--- 163 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSYV------------ND-------------------GISSI--- 163 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCc------------cc-------------------Ccccc---
Confidence 4799999999999999999998776676 6888875310 00 00000
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
....+++++++|+|+.++ .+.+++..+|+.....+ +.+.-+|+.+..
T Consensus 164 ---~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~m----------k~ga~lIN~sRG 211 (303)
T PRK06436 164 ---YMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLF----------RKGLAIINVARA 211 (303)
T ss_pred ---cCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcC----------CCCeEEEECCCc
Confidence 012356788999999876 56777877776444221 345556666543
No 139
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.81 E-value=0.14 Score=51.42 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=28.9
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|.|||+|.+|..++++|+..|. ++++.|.+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 79999999999999999999996 688888764
No 140
>PRK09186 flagellin modification protein A; Provisional
Probab=93.71 E-value=0.34 Score=46.64 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=28.0
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD 76 (478)
+++++|+|.|+ ||||.++++.|+..|. ++.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 46789999995 7999999999999997 566665
No 141
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.70 E-value=0.19 Score=50.61 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.8
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|.|||+|.+|+.++..|+.+|. .++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999997 589988654
No 142
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.70 E-value=0.33 Score=49.19 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=48.7
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhC-CCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMG-FNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~G-vg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
+++++|+|.| .|+||.++++.|+..| ..+++++|.+.. +...+.+.+ +.-+++.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v 58 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF 58 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence 3678999998 5899999999999987 457888875421 111111111 11245555
Q ss_pred ecccCCCc--hhhhccccEEEecc
Q psy7810 121 FCKIQDYD--SDFYQQFHIIVCGL 142 (478)
Q Consensus 121 ~~~i~~~~--~~~~~~~DlVi~~~ 142 (478)
..++.+.. .+.++++|+||.+.
T Consensus 59 ~~Dl~d~~~l~~~~~~iD~Vih~A 82 (324)
T TIGR03589 59 IGDVRDKERLTRALRGVDYVVHAA 82 (324)
T ss_pred EccCCCHHHHHHHHhcCCEEEECc
Confidence 56665432 45567789888753
No 143
>PRK07574 formate dehydrogenase; Provisional
Probab=93.67 E-value=0.34 Score=50.51 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=64.2
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|.+++|.|||+|.+|.++|+.|...|+ +++.+|..... .+ .. ... . ++.+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~-----~~--------------~~----~~~--g--~~~~- 239 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLP-----EE--------------VE----QEL--G--LTYH- 239 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCc-----hh--------------hH----hhc--C--ceec-
Confidence 3689999999999999999999998887 67777642210 00 00 011 1 1111
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeec
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEG 182 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G 182 (478)
...+++++.+|+|+.++ .+.+++..+|+.....+ +.+.-+|+.+..+
T Consensus 240 ----~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~m----------k~ga~lIN~aRG~ 287 (385)
T PRK07574 240 ----VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRM----------KRGSYLVNTARGK 287 (385)
T ss_pred ----CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcC----------CCCcEEEECCCCc
Confidence 12357789999998876 56788888887554332 3456677766443
No 144
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.63 E-value=0.41 Score=46.83 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=30.3
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.|+ |+||.++++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 46889999996 8999999999999998 68887744
No 145
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.61 E-value=0.38 Score=47.28 Aligned_cols=92 Identities=23% Similarity=0.216 Sum_probs=55.3
Q ss_pred CeEEEECC-chHHHHHHHHHHHh-CCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALM-GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~-Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.||+|+|+ |.+|..+++.+... ++.=+.++|.+.- ..... ....+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~~------------------------~~~~i~~---- 50 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVGQ------------------------GALGVAI---- 50 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---ccccc------------------------CCCCccc----
Confidence 38999999 99999999988764 5555555665431 11000 0011111
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeecee
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFK 184 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~ 184 (478)
.+.-.++++.+|+||+++- +..-..+-..|. ++++|++.+ +.|+.
T Consensus 51 -~~dl~~ll~~~DvVid~t~-p~~~~~~~~~al-------------~~G~~vvig-ttG~s 95 (257)
T PRK00048 51 -TDDLEAVLADADVLIDFTT-PEATLENLEFAL-------------EHGKPLVIG-TTGFT 95 (257)
T ss_pred -cCCHHHhccCCCEEEECCC-HHHHHHHHHHHH-------------HcCCCEEEE-CCCCC
Confidence 1112345567999999874 344455555665 578999955 55554
No 146
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.41 Score=46.76 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=29.6
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46788999985 7999999999999997 68887754
No 147
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.53 E-value=0.27 Score=49.47 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=50.5
Q ss_pred EEEECCchHHHHHHHHHHHhCC-CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCC---CeEEEEecc
Q psy7810 48 VLIIGAGGLGCELLKDIALMGF-NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPG---VKVIPHFCK 123 (478)
Q Consensus 48 VlvvG~GglG~eiaknLal~Gv-g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~---v~i~~~~~~ 123 (478)
|.|||+|++|+.++-.|+..|+ .+|+++|.+. .|++..+.-|....+. +++.. .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~-------------------~~~~g~~~DL~~~~~~~~~~~i~~--~- 58 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE-------------------EKAKGDALDLSHASAFLATGTIVR--G- 58 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHhHHHhccccCCCeEEE--C-
Confidence 5799999999999999999998 5699998532 3455556566665543 22221 1
Q ss_pred cCCCchhhhccccEEEeccCc
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn 144 (478)
.+.+-++++|+||.+...
T Consensus 59 ---~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 59 ---GDYADAADADIVVITAGA 76 (300)
T ss_pred ---CCHHHhCCCCEEEEcCCC
Confidence 113458899999998653
No 148
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.52 E-value=0.39 Score=46.41 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=49.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGF---NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gv---g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
+..||.|||+|.+|..+++.|...|. ..+.+++.. ...|++.++ +.. .+.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~----~~~-~~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQ----ARY-NVST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHH----HHc-CcEE--e
Confidence 56799999999999999999998873 224333321 012222222 222 2221 1
Q ss_pred ecccCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
....+.++++|+||.|+-....+..+.++
T Consensus 58 -----~~~~~~~~~~DiViiavp~~~~~~v~~~l 86 (245)
T PRK07634 58 -----TDWKQHVTSVDTIVLAMPPSAHEELLAEL 86 (245)
T ss_pred -----CChHHHHhcCCEEEEecCHHHHHHHHHHH
Confidence 12345678899999998876655555443
No 149
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.41 Score=46.21 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=28.8
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+++++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 46789999996 8999999999999997 5777654
No 150
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.41 E-value=0.38 Score=48.62 Aligned_cols=29 Identities=34% Similarity=0.669 Sum_probs=26.3
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEE
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVI 75 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~ii 75 (478)
.||+|+|+|++||..+-.|+++| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 38999999999999999999999 777775
No 151
>PRK08291 ectoine utilization protein EutC; Validated
Probab=93.36 E-value=0.42 Score=48.81 Aligned_cols=75 Identities=25% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCeEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIAL-MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal-~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.++|+|+|+|+.|...+..|.. .|+.+++|++.+. .|++..++.+++.. .+++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~-------------------~~a~~l~~~~~~~~-g~~v~~~--- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDA-------------------AKAEAYAADLRAEL-GIPVTVA--- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCH-------------------HHHHHHHHHHhhcc-CceEEEe---
Confidence 4689999999999999999985 5789999985332 36777777776433 2343322
Q ss_pred cCCCchhhhccccEEEeccCc
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.+.++|+||.|+..
T Consensus 189 --~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 189 --RDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred --CCHHHHHccCCEEEEeeCC
Confidence 1224567889999999765
No 152
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.36 E-value=0.43 Score=48.31 Aligned_cols=91 Identities=25% Similarity=0.337 Sum_probs=55.7
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQ 125 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~ 125 (478)
.+|.|+|+|+-|+.+|+.|+..| ..++++..|.-...+++.. +. =.+.-|++.+.. .-...
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~---~~--------------N~~yLp~i~lp~-~l~at 62 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET---RE--------------NPKYLPGILLPP-NLKAT 62 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc---Cc--------------CccccCCccCCc-ccccc
Confidence 58999999999999999999999 6777776543222222111 00 000112222111 01112
Q ss_pred CCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 126 DYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 126 ~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
.+..+..+++|+|+.++-+...|..+.++-
T Consensus 63 ~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~ 92 (329)
T COG0240 63 TDLAEALDGADIIVIAVPSQALREVLRQLK 92 (329)
T ss_pred cCHHHHHhcCCEEEEECChHHHHHHHHHHh
Confidence 223556788999999999888887777663
No 153
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.35 E-value=0.37 Score=48.47 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=29.7
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.||.|||+|.+|..++..|+..|++.+.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998769999986
No 154
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.34 E-value=0.32 Score=49.53 Aligned_cols=95 Identities=20% Similarity=0.176 Sum_probs=63.0
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg-~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
-+++++|.|+|+|.||..+|+.+. ||| +|...|...- ++.+. +.+ .+ +
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~~------~~~----~~-y 191 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAEK------ELG----AR-Y 191 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHHh------hcC----ce-e
Confidence 468999999999999999999998 776 4555543321 00000 000 11 1
Q ss_pred ecccCCCchhhhccccEEEec-cCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeec
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCG-LDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEG 182 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~-~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G 182 (478)
-+ .++++++.|+|+.. =.+.+++..||......+ +.+.-+|+.+-.+
T Consensus 192 ----~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~m----------k~ga~lVNtaRG~ 239 (324)
T COG1052 192 ----VD-LDELLAESDIISLHCPLTPETRHLINAEELAKM----------KPGAILVNTARGG 239 (324)
T ss_pred ----cc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhC----------CCCeEEEECCCcc
Confidence 11 46788999998875 477889999998766432 4567788776443
No 155
>PRK07680 late competence protein ComER; Validated
Probab=93.30 E-value=0.72 Score=45.58 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=50.2
Q ss_pred eEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGF---NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gv---g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
+|.|||+|.+|..+++.|...|+ ..++++|.+. .+++ .+.+..+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~----~~~~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAY----HIKERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHH----HHHHHcCCeEEE-----
Confidence 69999999999999999999985 4567765432 1222 222222333321
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
....+...++|+||.|+-....+..+.+.
T Consensus 54 --~~~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 54 --KTIEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred --CCHHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 22345578899999998655555555443
No 156
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.16 E-value=0.31 Score=48.43 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=28.0
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 79999999999999999999996 68888864
No 157
>PRK06194 hypothetical protein; Provisional
Probab=93.11 E-value=0.49 Score=46.56 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.6
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|||.| .||||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~ 39 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ 39 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3567899998 58999999999999997 68888754
No 158
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.08 E-value=0.14 Score=51.97 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=32.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++.||.|||+|.+|..++..|+..|+..|.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 56799999999999999999999998889999964
No 159
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.06 E-value=0.13 Score=54.16 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=33.0
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+.+|+|+|+|.+|..+++.|...|+.+++++|.+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 578999999999999999999999999999998753
No 160
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.04 E-value=0.66 Score=49.71 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.3
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
++|.|||+|..|..+|.||+..|+ ++++.|.+.=
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence 479999999999999999999998 7999986543
No 161
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.03 E-value=0.15 Score=48.20 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.5
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|++++|+|+|+|.+|..+++.|...|. ++++.|.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 578999999999999999999999997 78888755
No 162
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.41 Score=46.76 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=30.3
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57889999986 8999999999999996 58888764
No 163
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.96 E-value=0.36 Score=48.76 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=29.3
Q ss_pred eEEEECCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGF-NEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gv-g~i~iiD~D 78 (478)
||.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 79999999999999999999996 689999953
No 164
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.93 E-value=0.18 Score=46.68 Aligned_cols=96 Identities=20% Similarity=0.156 Sum_probs=62.0
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|.+++|.|+|+|.||.++|+-|...|. ++..+|...-. .. ..... .+ ..
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~--------------------~~---~~~~~--~~--~~-- 82 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKP--------------------EE---GADEF--GV--EY-- 82 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHH--------------------HH---HHHHT--TE--EE--
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCCh--------------------hh---hcccc--cc--ee--
Confidence 4689999999999999999999999998 78888854321 11 01111 11 11
Q ss_pred cccCCCchhhhccccEEEeccC-cHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLD-SIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~D-n~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
..-+++++++|+|+.++- +.+++..+|+...... +.+.-+|+.+-.
T Consensus 83 ----~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~m----------k~ga~lvN~aRG 129 (178)
T PF02826_consen 83 ----VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKM----------KPGAVLVNVARG 129 (178)
T ss_dssp ----SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTS----------TTTEEEEESSSG
T ss_pred ----eehhhhcchhhhhhhhhccccccceeeeeeeeecc----------ccceEEEeccch
Confidence 123578889999998764 6677777777665432 346677776643
No 165
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.90 E-value=0.45 Score=42.49 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=52.1
Q ss_pred CeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 46 CKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 46 ~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
+.|+|+| .||||-++++.|+..|-..+.+++.+ .-..+.+.+.+.+... ..++.....++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~--~~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAP--GAKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHT--TSEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------cccccccccccccccc--ccccccccccc
Confidence 4688888 88999999999999998888888755 1123445555556644 36777776665
Q ss_pred CCCc---------hhhhccccEEEecc
Q psy7810 125 QDYD---------SDFYQQFHIIVCGL 142 (478)
Q Consensus 125 ~~~~---------~~~~~~~DlVi~~~ 142 (478)
.+.. .+.+...|++|.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 62 SDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp TSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred ccccccccccccccccccccccccccc
Confidence 5321 11234677887653
No 166
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.87 E-value=0.47 Score=49.66 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=59.9
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc--cCCCC---------CccCc-----------hHH
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ--FLFRQ---------KDIGS-----------SKA 101 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq--fl~~~---------~diG~-----------~Ka 101 (478)
++.+|+|+|.|.+|.++++.|...|. .++++|.|.++.. ..++ +.++. ..+.+ ...
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~N 316 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADN 316 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHH
Confidence 46789999999999999999998886 6889998855321 2111 12111 01111 122
Q ss_pred HHHHHHHHhhCCCCeEEEEecccCCCchhhh--ccccEEEec
Q psy7810 102 EVAAKFINSRIPGVKVIPHFCKIQDYDSDFY--QQFHIIVCG 141 (478)
Q Consensus 102 ~aa~~~l~~~np~v~i~~~~~~i~~~~~~~~--~~~DlVi~~ 141 (478)
..++..++++||++++.+...+- .+.+.+ -+.|.||..
T Consensus 317 l~ivL~ar~l~p~~kIIa~v~~~--~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 317 AFVVLAAKEMSSDVKTVAAVNDS--KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHHhCCCCcEEEEECCH--HHHHHHHhcCCCEEECH
Confidence 33455688999998888766542 223333 367888865
No 167
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.83 E-value=0.62 Score=46.49 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=27.7
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+|.|||+|.+|..++++|+..|. .+.++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 57777653
No 168
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.76 E-value=0.4 Score=49.84 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=29.3
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
..+|+||| +|.+|..+++.|..+|. .++++|.+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 36899998 99999999999999995 69999864
No 169
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=92.75 E-value=0.38 Score=49.46 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=56.6
Q ss_pred eEEEECC-chHHHHHHHHHHHhCCCeEE-EEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGFNEIH-VIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gvg~i~-iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
||+|+|+ |.+|.++++.|...-.-++. +++.+. ..|+. +.+.+|.+.... ...+
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Ccee
Confidence 7999999 99999999999966333444 545432 12221 111223221100 1111
Q ss_pred CCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEee
Q psy7810 125 QDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGG 179 (478)
Q Consensus 125 ~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g 179 (478)
.+.+ .++.+++|+|+.|+.+..++.++..+. +.++.+||-+
T Consensus 58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~--------------~~G~~VIDlS 99 (346)
T TIGR01850 58 EPIDEEEIAEDADVVFLALPHGVSAELAPELL--------------AAGVKVIDLS 99 (346)
T ss_pred ecCCHHHhhcCCCEEEECCCchHHHHHHHHHH--------------hCCCEEEeCC
Confidence 2112 345568999999999988888777765 2467777754
No 170
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.73 E-value=0.27 Score=50.88 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=56.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCC------CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHh--hC---
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGF------NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINS--RI--- 112 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gv------g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~--~n--- 112 (478)
+..+|.|+|+|+.|+.+|..|+..|. .+++++..|..- -++. ..+.+++ .|
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~~----~~~~in~~~~N~~y 71 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGEK----LSDIINTKHENVKY 71 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cchH----HHHHHHhcCCCccc
Confidence 45599999999999999999999983 367776544310 0111 1222221 12
Q ss_pred -CCCeEEEEeccc--CCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 113 -PGVKVIPHFCKI--QDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 113 -p~v~i~~~~~~i--~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
|++++ +.++ .....+.+++.|+||.++-....|..+.++.
T Consensus 72 lp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 72 LPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred CCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence 33332 1122 1223456789999999998877776666553
No 171
>PLN03139 formate dehydrogenase; Provisional
Probab=92.71 E-value=0.46 Score=49.57 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=63.9
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|.+++|.|||+|.+|..+|+.|...|+ ++..+|..... .+.. .+. . +..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~-------------------~~~~----~~~--g--~~~-- 245 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMD-------------------PELE----KET--G--AKF-- 245 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcc-------------------hhhH----hhc--C--cee--
Confidence 4699999999999999999999998887 57777642210 0000 011 1 111
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeec
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEG 182 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G 182 (478)
.+..++++++.|+|+.++ .+.+++..+|+.....+ +.+.-+|+.+..+
T Consensus 246 ---~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m----------k~ga~lIN~aRG~ 294 (386)
T PLN03139 246 ---EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKM----------KKGVLIVNNARGA 294 (386)
T ss_pred ---cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhC----------CCCeEEEECCCCc
Confidence 112356788999998875 56788888887654322 3456677776443
No 172
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.69 E-value=0.72 Score=46.74 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=45.2
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
.++.++|.|+ ||||.++++.|+..|. ++.+++.+. .|.+.+++.+++.++..++..+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence 4788999995 7999999999999997 688887432 245556667776666666665555
Q ss_pred ccC
Q psy7810 123 KIQ 125 (478)
Q Consensus 123 ~i~ 125 (478)
++.
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 443
No 173
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.69 E-value=0.16 Score=51.97 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=32.1
Q ss_pred HhcCCeEEEECC-chHHHHHHHHHHH-hCCCeEEEEeCC
Q psy7810 42 LQTSCKVLIIGA-GGLGCELLKDIAL-MGFNEIHVIDMD 78 (478)
Q Consensus 42 ~L~~~~VlvvG~-GglG~eiaknLal-~Gvg~i~iiD~D 78 (478)
-|++++|+|+|+ |.+|+++++.|+. .|+.++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 357899999999 8999999999985 489999998754
No 174
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.67 E-value=0.68 Score=44.82 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.4
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+|+|.|+ ||+|.++++.|+..|. +++++|.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARN 34 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57999996 9999999999999996 78887743
No 175
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.59 E-value=0.41 Score=49.23 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=31.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..+|+|+|+|.+|.-.+..+.+.|...|.++|.+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 33899999999999999999999999999997544
No 176
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.57 E-value=1.3 Score=43.90 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=51.1
Q ss_pred eEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGF---NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gv---g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
+|.|||+|.+|..+++.|...|. .++.++|.+.- .|. +.+....+.+.+.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~~----- 55 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVELA----- 55 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEEe-----
Confidence 79999999999999999999983 46777765320 111 1122222332221
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
....+..+++|+||.|+-....+..+.+..
T Consensus 56 --~~~~e~~~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 56 --DNEAEIFTKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred --CCHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence 123456789999999988666666555543
No 177
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.46 E-value=0.58 Score=47.97 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=53.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
..||.|+|+|.+|+.++..|+..| .++++..+.-....++..-. .....+.. ..+.+.+ ..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~~---------~~l~~~i--~~----- 67 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGND---------VVLSDTL--RA----- 67 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCCC---------cccCCCe--EE-----
Confidence 468999999999999999999998 46666544322222221110 01111100 0011111 11
Q ss_pred CCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 125 QDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 125 ~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
.....+.++++|+||.|+-....+..+.++..
T Consensus 68 t~d~~~a~~~aDlVilavps~~~~~vl~~i~~ 99 (341)
T PRK12439 68 TTDFAEAANCADVVVMGVPSHGFRGVLTELAK 99 (341)
T ss_pred ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHh
Confidence 11223456889999999988777776666653
No 178
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.45 E-value=0.47 Score=45.36 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=30.1
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|++++++|+|+ ||||..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999997 9999999999999997 68888743
No 179
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.44 E-value=0.53 Score=47.29 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=28.5
Q ss_pred EEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 48 VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.|||+|.+|+.++..|+..|.++++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987699999976
No 180
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.43 E-value=0.87 Score=44.95 Aligned_cols=63 Identities=29% Similarity=0.427 Sum_probs=50.9
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+.++++|-| -+|||-|+|+.|+.-|. ++.|+-.+ +.|-+.+++.|+... .++++.+..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~-------------------~~kL~~la~~l~~~~-~v~v~vi~~ 63 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-NLILVARR-------------------EDKLEALAKELEDKT-GVEVEVIPA 63 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHHHhh-CceEEEEEC
Confidence 678999999 57999999999999996 67776432 247788888898887 788888888
Q ss_pred ccCCC
Q psy7810 123 KIQDY 127 (478)
Q Consensus 123 ~i~~~ 127 (478)
++.+.
T Consensus 64 DLs~~ 68 (265)
T COG0300 64 DLSDP 68 (265)
T ss_pred cCCCh
Confidence 77653
No 181
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=92.37 E-value=0.63 Score=45.94 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=24.0
Q ss_pred eEEEECCchHHHHHHHHHHHhC--CCeEEEEeC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMG--FNEIHVIDM 77 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~G--vg~i~iiD~ 77 (478)
||.|||+|.+|..+++.|...+ +.-+.++|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~ 35 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDR 35 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECC
Confidence 8999999999999999998764 333444443
No 182
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.35 E-value=0.69 Score=45.56 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=26.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++.++|.|+||||.++++.|+ .|. ++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCC
Confidence 567889999999999999996 784 78887754
No 183
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.30 E-value=0.22 Score=50.60 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=28.3
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|.|+|+|++|+.++..|+.+| .++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCH
Confidence 6999999999999999999999 4688887654
No 184
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=92.25 E-value=0.84 Score=44.07 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=27.9
Q ss_pred CCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 567999985 7999999999999996 68888754
No 185
>PRK06932 glycerate dehydrogenase; Provisional
Probab=92.20 E-value=0.51 Score=47.86 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=61.8
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|++++|.|||+|.||.++|+-|...|. ++..+|.. ...+.. .
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~-------------~~~~~~-----------------~------ 186 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHK-------------GASVCR-----------------E------ 186 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCC-------------cccccc-----------------c------
Confidence 4689999999999999999999987776 45555421 000000 0
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
. ...-++++++.|+|+.++ -+.+++..+|+.....+ +.+.-+|+.+-.
T Consensus 187 -~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~m----------k~ga~lIN~aRG 235 (314)
T PRK06932 187 -G-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALM----------KPTAFLINTGRG 235 (314)
T ss_pred -c-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhC----------CCCeEEEECCCc
Confidence 0 012367889999999876 47889999988766433 345667777643
No 186
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.19 E-value=0.21 Score=49.94 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=31.1
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 568999999999999999999999997 8999875
No 187
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.13 E-value=0.74 Score=43.82 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=27.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEE-eC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVI-DM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~ii-D~ 77 (478)
|++++|+|+|+ |++|.++++.|+..|.. +.++ +.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r 38 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDI 38 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 46789999985 89999999999999975 5554 53
No 188
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.09 E-value=0.76 Score=51.39 Aligned_cols=94 Identities=17% Similarity=0.305 Sum_probs=54.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCC--CCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFR--QKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~--~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.+.+|+|||+|..|-..|..|++.|. +++|+|.+. .++.+.-+. ...+.+...+.-.+.++++ ++++....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~----~~GG~l~~gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~ 398 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP----EIGGLLTFGIPAFKLDKSLLARRREIFSAM--GIEFELNC 398 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC----CCCceeeecCCCccCCHHHHHHHHHHHHHC--CeEEECCC
Confidence 57899999999999999999999997 599998642 233222121 1112222222223334443 34443221
Q ss_pred cccC-CCc-hhhhccccEEEeccCcH
Q psy7810 122 CKIQ-DYD-SDFYQQFHIIVCGLDSI 145 (478)
Q Consensus 122 ~~i~-~~~-~~~~~~~DlVi~~~Dn~ 145 (478)
.+. +.. .+...+||.||.++...
T Consensus 399 -~v~~~i~~~~~~~~~DavilAtGa~ 423 (654)
T PRK12769 399 -EVGKDISLESLLEDYDAVFVGVGTY 423 (654)
T ss_pred -EeCCcCCHHHHHhcCCEEEEeCCCC
Confidence 111 111 23456899999988763
No 189
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.06 E-value=0.75 Score=50.25 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=50.8
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhh-------CCCC
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSR-------IPGV 115 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~-------np~v 115 (478)
.++.|+|.|+ |+||..+++.|+..|. +|++++.+. .|++.+.+.+.++ .+..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~~ 138 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPVE 138 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccccccC
Confidence 5678999985 9999999999999996 577665432 1233333333221 1122
Q ss_pred eEEEEecccCCCc--hhhhccccEEEeccC
Q psy7810 116 KVIPHFCKIQDYD--SDFYQQFHIIVCGLD 143 (478)
Q Consensus 116 ~i~~~~~~i~~~~--~~~~~~~DlVi~~~D 143 (478)
+++....++.+.. ...+.+.|+||++..
T Consensus 139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 139 KLEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred ceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 4555666665432 345788999998753
No 190
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.06 E-value=0.82 Score=48.38 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=52.4
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
+|+|+|+|.+|..+++.|...|. .++++|.+.- +++ .+++ ...+....++..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~~----~~~~---~~~~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RLR----RLQD---RLDVRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HHH----HHHh---hcCEEEEEeCCCC
Confidence 79999999999999999999997 5788885431 112 1221 1123333444332
Q ss_pred Cc--hhh-hccccEEEeccCcHHHHHHHHHHHHH
Q psy7810 127 YD--SDF-YQQFHIIVCGLDSIVARRWINGMLLS 157 (478)
Q Consensus 127 ~~--~~~-~~~~DlVi~~~Dn~~~r~~in~~~~~ 157 (478)
.. .+. ++++|.||.++++...-..+-..++.
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~ 88 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKS 88 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHH
Confidence 21 112 57889999988776655555455543
No 191
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=92.03 E-value=0.71 Score=46.52 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=28.7
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~ 39 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRN 39 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 567899998 58999999999999994 78888754
No 192
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.01 E-value=0.23 Score=47.59 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=34.1
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
|+.++|+|.|.|.+|..+++.|...|..-+.+.|.+-
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 5789999999999999999999999999999999664
No 193
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.01 E-value=0.31 Score=48.69 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=27.1
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
||+|+|+|++|+.++..|+.+|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 79999999999999999999985 6888875
No 194
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.99 E-value=0.86 Score=49.98 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=31.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+.+|+|||+|.+|-..|..|.+.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57899999999999999999999998 599998543
No 195
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=91.98 E-value=0.23 Score=50.74 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=32.8
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+++|+|||+|-+|..++++|...|+++|++....
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 578999999999999999999999999999997443
No 196
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.97 E-value=0.43 Score=47.66 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=30.5
Q ss_pred hcCCeEEEECCch-HHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGAGG-LGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~Gg-lG~eiaknLal~Gvg~i~iiD~ 77 (478)
|++++|+|||.|. +|..+++.|...|. .+++++.
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s 190 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHS 190 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeC
Confidence 6899999999999 99999999999985 7888764
No 197
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=91.90 E-value=1.3 Score=47.79 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=65.9
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCch---HHHHHHHHHHhh-CCCCeEEEEe
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSS---KAEVAAKFINSR-IPGVKVIPHF 121 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~---Ka~aa~~~l~~~-np~v~i~~~~ 121 (478)
.+|.+||+|-.|..+|+||+..|+ ++++.|.+.=....+...+ ...|.. -+...++.++.+ .|.+=+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~~----~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHhh----hhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999998 7999886532222111100 000211 122233333332 2443333322
Q ss_pred cc--cCC---CchhhhccccEEEeccC-cHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeece
Q psy7810 122 CK--IQD---YDSDFYQQFHIIVCGLD-SIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGF 183 (478)
Q Consensus 122 ~~--i~~---~~~~~~~~~DlVi~~~D-n~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~ 183 (478)
.. +.+ .....++.-|+||++.- +++.-..+.+.+. +.++.++++++.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~-------------~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA-------------EKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH-------------HcCCeEEeCCCcCC
Confidence 11 010 01122345578888743 3444444455554 46899999998876
No 198
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.89 E-value=0.24 Score=48.50 Aligned_cols=96 Identities=11% Similarity=0.186 Sum_probs=57.1
Q ss_pred HHhcCCeEEEECCchHHHHHHHHHHHh----CC------CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHh
Q psy7810 41 FLQTSCKVLIIGAGGLGCELLKDIALM----GF------NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINS 110 (478)
Q Consensus 41 ~~L~~~~VlvvG~GglG~eiaknLal~----Gv------g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~ 110 (478)
+.|.+.||+++|+|+-|.-+++.|+.+ |+ ++|.++|.+-+=..+ ..|+-.. -+...+.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~~~----~~~~a~~ 88 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLNPH----KKPFARK 88 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHSHH----HHHHHBS
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCChh----hhhhhcc
Confidence 357999999999999999999999999 99 899999987542111 1122111 2333334
Q ss_pred hCCCCeEEEEecccCCCchhhhccc--cEEEeccC--cHHHHHHHHHHHH
Q psy7810 111 RIPGVKVIPHFCKIQDYDSDFYQQF--HIIVCGLD--SIVARRWINGMLL 156 (478)
Q Consensus 111 ~np~v~i~~~~~~i~~~~~~~~~~~--DlVi~~~D--n~~~r~~in~~~~ 156 (478)
.+|.... ....+.++++ |++|.+.. ..=+..+|-.++.
T Consensus 89 ~~~~~~~--------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~ 130 (255)
T PF03949_consen 89 TNPEKDW--------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAK 130 (255)
T ss_dssp SSTTT----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHH
T ss_pred Ccccccc--------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhc
Confidence 4433211 1224556666 88887642 3334556666554
No 199
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.88 E-value=0.28 Score=48.18 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=49.2
Q ss_pred CeEEEECCchHHHHHHHHHHHhCC--CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGF--NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gv--g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.+|.|||+|.+|..++..|...|. ..+.++|.+. .+++. +.+.. .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~----~~~~~-g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAA----LAEEY-GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHH----HHHhc-CCee------
Confidence 479999999999999999999984 3566665321 12222 22211 1221
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
.....+...++|+||.|+-....+..+..+
T Consensus 53 -~~~~~~~~~~advVil~v~~~~~~~v~~~l 82 (267)
T PRK11880 53 -ATDNQEAAQEADVVVLAVKPQVMEEVLSEL 82 (267)
T ss_pred -cCChHHHHhcCCEEEEEcCHHHHHHHHHHH
Confidence 122344567899999998766555555554
No 200
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.87 E-value=0.43 Score=48.06 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=54.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCC--------ccCCccccCCCCCccCchHHHHHHHHHHhhCCCCe
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID--------LSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVK 116 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~--------~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~ 116 (478)
=++|.|||+|-.|+-||..++.+|+ .+++.|...-. ..+|.|+. .-|+-+.+.+...+.++.|...
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCc
Confidence 3689999999999999999999776 68898865111 11111110 0132222223333333322211
Q ss_pred EEEEecccCCCchhhhccccEEEecc-CcHHHHHHHHHHH
Q psy7810 117 VIPHFCKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGML 155 (478)
Q Consensus 117 i~~~~~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~ 155 (478)
..-++++|+||.+. .|.+.++.+-+..
T Consensus 77 ------------~~~l~~~DlVIEAv~E~levK~~vf~~l 104 (307)
T COG1250 77 ------------LAALKDADLVIEAVVEDLELKKQVFAEL 104 (307)
T ss_pred ------------hhHhccCCEEEEeccccHHHHHHHHHHH
Confidence 11478999999985 6777766554443
No 201
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.86 E-value=0.93 Score=43.67 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=29.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~ 40 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLN 40 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence 35788999996 9999999999999997 57777653
No 202
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.86 E-value=0.83 Score=45.51 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=30.1
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4788999998 48999999999999997 68887754
No 203
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.85 E-value=0.7 Score=44.95 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=29.9
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999984 5899999999999998 88888764
No 204
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.84 E-value=0.68 Score=44.65 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=29.2
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++++|.| .||||.++++.|+..|. ++.+++.+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~ 39 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARR 39 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3678899998 47999999999999997 67777653
No 205
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.82 E-value=1.2 Score=44.05 Aligned_cols=82 Identities=11% Similarity=0.197 Sum_probs=51.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGF---NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gv---g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
...+|.+||+|.+|..+++.|...|+ ..+++.|... ..+++.++ ... .+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~~l~----~~~-g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQELH----QKY-GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHHHHH----Hhc-CceEe--
Confidence 34589999999999999999999983 2344432110 01222222 211 23222
Q ss_pred ecccCCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
..+.+..++.|+||.|+-+......+..+.
T Consensus 57 -----~~~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 -----HNKKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred -----CCHHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 123455678999999998877777666554
No 206
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=91.80 E-value=0.64 Score=47.34 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=60.7
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg-~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
.|.+++|.|||+|.||.++++-|. .|+| ++...|.- . +.+.. ... ++. .
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~-~~fgm~V~~~~~~-------------~-------~~~~~----~~~--~~~--~- 191 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARR-------------H-------HKEAE----ERF--NAR--Y- 191 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHH-hcCCCEEEEECCC-------------C-------chhhH----Hhc--CcE--e-
Confidence 469999999999999999999986 4555 35444420 0 00000 011 111 0
Q ss_pred ecccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeec
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEG 182 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G 182 (478)
..-+++++++|+|+.++ -+.+++..+|+.....+ +.+--+|+.+-.+
T Consensus 192 -----~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~m----------k~ga~lIN~aRG~ 239 (323)
T PRK15409 192 -----CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKM----------KSSAIFINAGRGP 239 (323)
T ss_pred -----cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcC----------CCCeEEEECCCcc
Confidence 12357889999999865 57888988887665432 3456677776433
No 207
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=91.76 E-value=0.65 Score=47.69 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=53.3
Q ss_pred eEEEECCchHHHHHHHHHHHhC------C-CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhh--C----C
Q psy7810 47 KVLIIGAGGLGCELLKDIALMG------F-NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSR--I----P 113 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~G------v-g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~--n----p 113 (478)
||.|+|+|..|+.+|..|+..| | .+++++..+. ++-.. ...+.+++. | |
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~---~~~~~in~~~~n~~ylp 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGR---NLTEIINTTHENVKYLP 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCH---HHHHHHHhcCCCccccC
Confidence 6899999999999999999988 2 3677775422 11000 112222221 1 2
Q ss_pred CCeEEEEeccc--CCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 114 GVKVIPHFCKI--QDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 114 ~v~i~~~~~~i--~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
++++ +.++ .....+.++++|+||.++-+...|..+.++.
T Consensus 63 gi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~ 103 (342)
T TIGR03376 63 GIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLK 103 (342)
T ss_pred CCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHH
Confidence 2211 1111 1223466789999999998877776666654
No 208
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=91.76 E-value=0.33 Score=51.94 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=65.9
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhh-CCCCeEEEEec--c
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSR-IPGVKVIPHFC--K 123 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~-np~v~i~~~~~--~ 123 (478)
.|.|||+|..|..+|.||+..|+ ++++.|.+.-....+..++. . .-+-.-+...++.+..+ .|.+-+..... .
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~--~-g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA--K-GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc--C-CCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999998 69999876544333322210 0 00000111223333333 24433333222 1
Q ss_pred cCCC---chhhhccccEEEeccC-c-HHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeece
Q psy7810 124 IQDY---DSDFYQQFHIIVCGLD-S-IVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGF 183 (478)
Q Consensus 124 i~~~---~~~~~~~~DlVi~~~D-n-~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~ 183 (478)
+.+- ....++.-|+||++.. . ..+++.. +.+. +.++.++++++.|-
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~-~~l~-------------~~gi~fvdapVsGG 127 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRY-KELK-------------AKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHH-HHHH-------------hcCCEEEcCCCCCC
Confidence 1111 1223455689999753 3 3344443 3343 46789999998875
No 209
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.74 E-value=0.78 Score=46.04 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=28.0
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|.|||+|.+|..++.+|+..|. .+.+.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 79999999999999999999995 677777554
No 210
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.73 E-value=0.27 Score=45.61 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=52.7
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCcccc---CCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF---LFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqf---l~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
+|.|||+|.+|..+|-.++++|+ +++++|.+.-.....-... |=+..+-|+...+.+.+.+.++ ++ ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i----~~---~~- 71 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARI----SF---TT- 71 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTE----EE---ES-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhc----cc---cc-
Confidence 69999999999999999999996 7999997654322211110 0000011222222223333322 11 11
Q ss_pred cCCCchhhhccccEEEecc-CcHHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGL-DSIVARRWINGML 155 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~ 155 (478)
.-.+.. ++|+||.|. .+.+.++.+-...
T Consensus 72 ---dl~~~~-~adlViEai~E~l~~K~~~~~~l 100 (180)
T PF02737_consen 72 ---DLEEAV-DADLVIEAIPEDLELKQELFAEL 100 (180)
T ss_dssp ---SGGGGC-TESEEEE-S-SSHHHHHHHHHHH
T ss_pred ---CHHHHh-hhheehhhccccHHHHHHHHHHH
Confidence 123334 999999986 5677776665544
No 211
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.72 E-value=0.61 Score=49.11 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=63.3
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|.+++|.|||+|.||..+|+.+...|. ++...|... ... . ..+ ..
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~-------------~~~---------------~-~~~--~~-- 193 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED-------------KLP---------------L-GNA--RQ-- 193 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc-------------ccc---------------c-CCc--ee--
Confidence 4699999999999999999999998886 677777310 000 0 011 10
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
...-+++++++|+|+.++ .+.+++..+|+.....+ +.+--+|+.+..
T Consensus 194 ---~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~m----------k~ga~lIN~aRG 241 (409)
T PRK11790 194 ---VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALM----------KPGAILINASRG 241 (409)
T ss_pred ---cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcC----------CCCeEEEECCCC
Confidence 112467899999999876 46788988987765432 345667777643
No 212
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.70 E-value=1.1 Score=45.10 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.2
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|.+||+|-+|..++++|...|. .|++.|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999996 688887643
No 213
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.69 E-value=0.79 Score=50.94 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
..+|+|+|+|.+|..+++.|...|+ +++++|.|.- +++. +++. +. .++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~--g~--~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIET----LRKF--GM--KVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhc--CC--eEEEEeC
Confidence 5799999999999999999999998 6899998762 2222 2221 22 3344544
Q ss_pred CCCc---hhhhccccEEEeccCcHHHHHHHHHHHHH
Q psy7810 125 QDYD---SDFYQQFHIIVCGLDSIVARRWINGMLLS 157 (478)
Q Consensus 125 ~~~~---~~~~~~~DlVi~~~Dn~~~r~~in~~~~~ 157 (478)
.+.+ ..-++++|+||.++|+.+....+-..++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~ 487 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKE 487 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3321 12356889999999998887777777763
No 214
>PLN02253 xanthoxin dehydrogenase
Probab=91.66 E-value=0.88 Score=44.60 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=29.5
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~ 51 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQ 51 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4678899998 68999999999999996 67787743
No 215
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.60 E-value=0.23 Score=50.01 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=29.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..||+|+|+|++|+-++-.|+.+|. .+++++...
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEech
Confidence 3489999999999999999999995 799998753
No 216
>PRK08655 prephenate dehydrogenase; Provisional
Probab=91.60 E-value=0.51 Score=50.15 Aligned_cols=31 Identities=42% Similarity=0.617 Sum_probs=27.3
Q ss_pred eEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|+||| +|++|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 799997 89999999999999996 68888753
No 217
>PLN02427 UDP-apiose/xylose synthase
Probab=91.58 E-value=1.4 Score=45.64 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=28.7
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
++..||||.| .|-||+++++.|+..|--++..+|.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 4667899999 5999999999999985236887774
No 218
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.57 E-value=0.95 Score=43.32 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=28.8
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 46789999985 8999999999999995 6777764
No 219
>PRK06523 short chain dehydrogenase; Provisional
Probab=91.49 E-value=0.68 Score=44.75 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=48.4
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchH-HHHHHHHHHhhCCCCeEEEE
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSK-AEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~K-a~aa~~~l~~~np~v~i~~~ 120 (478)
+++++|+|.| .||||.++++.|+..|. ++.+++.+.-+ ++.....+-.-|+.... .+.+.+.+.+..+.+.+-.+
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 83 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH 83 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5788999999 58999999999999997 68888876432 22222323345665433 33444445554444554444
Q ss_pred e
Q psy7810 121 F 121 (478)
Q Consensus 121 ~ 121 (478)
.
T Consensus 84 ~ 84 (260)
T PRK06523 84 V 84 (260)
T ss_pred C
Confidence 3
No 220
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.44 E-value=0.88 Score=43.19 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=28.3
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+.+|+|+|+ |++|.++++.|+..|. ++.+++.+
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~ 39 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARD 39 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCC
Confidence 4678999985 8999999999999997 47777643
No 221
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.42 E-value=0.92 Score=47.70 Aligned_cols=86 Identities=22% Similarity=0.294 Sum_probs=52.8
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
+|.|||+|-+|..+|.+|+..|. +++++|.+.-....|+++... -.+-|... .+.+.+. . . +++.. .
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g~~~-~~e~~l~~--~~~~~~~-~--g-~l~~~-----~ 68 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSP-IYEPGLDE--LLAKALA-A--G-RLRAT-----T 68 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcCCCC-CCCCCHHH--HHHHhhh-c--C-CeEEE-----C
Confidence 79999999999999999999997 699999876655556554321 11222211 1111111 1 1 12211 1
Q ss_pred CchhhhccccEEEeccCcH
Q psy7810 127 YDSDFYQQFHIIVCGLDSI 145 (478)
Q Consensus 127 ~~~~~~~~~DlVi~~~Dn~ 145 (478)
...+.++++|+||.|+...
T Consensus 69 ~~~~~~~~advvii~vpt~ 87 (411)
T TIGR03026 69 DYEDAIRDADVIIICVPTP 87 (411)
T ss_pred CHHHHHhhCCEEEEEeCCC
Confidence 1234568899999998654
No 222
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=91.41 E-value=0.19 Score=49.20 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=35.9
Q ss_pred HHhcCCeEEEECCchHHHHHHHHHHHhCCC----------eEEEEeCCcC
Q psy7810 41 FLQTSCKVLIIGAGGLGCELLKDIALMGFN----------EIHVIDMDTI 80 (478)
Q Consensus 41 ~~L~~~~VlvvG~GglG~eiaknLal~Gvg----------~i~iiD~D~v 80 (478)
+.|.+.||+++|+|+-|.-+++.|..+|+. +|.++|..-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 356899999999999999999999999997 8999997754
No 223
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.39 E-value=1.1 Score=42.91 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=29.2
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.| .|++|.++++.|+..|. ++.+++..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3678999999 69999999999999997 67776543
No 224
>PRK06196 oxidoreductase; Provisional
Probab=91.32 E-value=0.84 Score=45.87 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=29.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46788999996 8999999999999997 68887754
No 225
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.24 E-value=1.4 Score=42.05 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=30.0
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.| .|+||..+++.|+..|. ++.+++.+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3577899998 66999999999999998 78888755
No 226
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.19 E-value=0.72 Score=46.98 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=63.2
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
|.+++|.|||+|.||+.+++-|...|+ ++..+|.-.-. + ++. . ..+..
T Consensus 140 l~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~~~~~-------------~----~~~--------~---~~~~~--- 187 (324)
T COG0111 140 LAGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDPYSPR-------------E----RAG--------V---DGVVG--- 187 (324)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCCch-------------h----hhc--------c---cccee---
Confidence 589999999999999999999999997 56666641110 0 000 0 00000
Q ss_pred ccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeec
Q psy7810 123 KIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEG 182 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G 182 (478)
.+.-++++++.|+|+..+ -+.++|-.||..-...+ +.+.-+|+++-.+
T Consensus 188 --~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~M----------K~gailIN~aRG~ 236 (324)
T COG0111 188 --VDSLDELLAEADILTLHLPLTPETRGLINAEELAKM----------KPGAILINAARGG 236 (324)
T ss_pred --cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhC----------CCCeEEEECCCcc
Confidence 122467889999998875 46778888887665432 3456788876544
No 227
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=91.15 E-value=0.29 Score=48.58 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=60.5
Q ss_pred HHhcCCeEEEECCchHHHHHHHHHHHh----CC------CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHh
Q psy7810 41 FLQTSCKVLIIGAGGLGCELLKDIALM----GF------NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINS 110 (478)
Q Consensus 41 ~~L~~~~VlvvG~GglG~eiaknLal~----Gv------g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~ 110 (478)
+.|.+.||+++|+|+-|..+++.|+.+ |+ ++|.++|.+-+=..+ | .|+-..|.. ..+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~----~a~~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKP----FARK 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHH----HHhh
Confidence 356899999999999999999999998 99 699999977642211 1 123333333 2223
Q ss_pred hCCCCeEEEEecccCCCchhhhc--cccEEEeccC--cHHHHHHHHHHHH
Q psy7810 111 RIPGVKVIPHFCKIQDYDSDFYQ--QFHIIVCGLD--SIVARRWINGMLL 156 (478)
Q Consensus 111 ~np~v~i~~~~~~i~~~~~~~~~--~~DlVi~~~D--n~~~r~~in~~~~ 156 (478)
.++ .. .....+.++ +.|++|.+.. ..=+...|-.++.
T Consensus 89 ~~~--------~~-~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~ 129 (279)
T cd05312 89 DEE--------KE-GKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAK 129 (279)
T ss_pred cCc--------cc-CCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh
Confidence 332 00 122355677 7799888653 3445566666664
No 228
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.15 E-value=0.96 Score=45.36 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=29.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+..+|+|+|+|++|...+..+...|+..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4568999999999999998888889988877764
No 229
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.13 E-value=0.79 Score=44.11 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=29.6
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 46789999985 7999999999999996 68887654
No 230
>PRK07024 short chain dehydrogenase; Provisional
Probab=91.10 E-value=0.9 Score=43.97 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=28.5
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789998 78999999999999997 78888864
No 231
>PLN02688 pyrroline-5-carboxylate reductase
Probab=91.09 E-value=1.7 Score=42.51 Aligned_cols=77 Identities=19% Similarity=0.387 Sum_probs=48.4
Q ss_pred eEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGF---NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gv---g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
||.+||+|.+|..++++|..+|. ..|++++ +| ...|++. +.+. .+.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~---------~r---------~~~~~~~----~~~~--g~~~~----- 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTAD---------DS---------NPARRDV----FQSL--GVKTA----- 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe---------CC---------CHHHHHH----HHHc--CCEEe-----
Confidence 79999999999999999999985 2455542 01 1122222 2222 33322
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
....+..++.|+||.|+.....+..+..+
T Consensus 53 --~~~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 53 --ASNTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred --CChHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 12345567899999999765556555544
No 232
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.05 E-value=1.4 Score=42.56 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=30.6
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 46789999997 7999999999999998 78888754
No 233
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.99 E-value=0.63 Score=48.53 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=51.8
Q ss_pred CCeEEEECC-chHHHHHHHHHHHhCCC------eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhC-CCC-
Q psy7810 45 SCKVLIIGA-GGLGCELLKDIALMGFN------EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRI-PGV- 115 (478)
Q Consensus 45 ~~~VlvvG~-GglG~eiaknLal~Gvg------~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~n-p~v- 115 (478)
-.||.|||+ |.+|+.+|..|+..|+- .|+|+|.| +.+.|++.-+--|.... |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~ 106 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLR 106 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcC
Confidence 359999999 99999999999999984 36666643 33445555555555443 332
Q ss_pred eEEEEecccCCCchhhhccccEEEeccCc
Q psy7810 116 KVIPHFCKIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 116 ~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
++... ..+.+-+++.|+||.+-..
T Consensus 107 ~v~i~-----~~~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 107 EVSIG-----IDPYEVFEDADWALLIGAK 130 (387)
T ss_pred ceEEe-----cCCHHHhCCCCEEEECCCC
Confidence 22211 1234558899999987543
No 234
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.98 E-value=0.32 Score=49.28 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=53.2
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|++++|.|||+|.+|..+|+||..+|+ ++.+.|... ++... ... ...++.
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~--------------------~s~~~---A~~--~G~~v~--- 63 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPG--------------------KSFEV---AKA--DGFEVM--- 63 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcc--------------------hhhHH---HHH--cCCEEC---
Confidence 5699999999999999999999999998 677765210 11000 111 122211
Q ss_pred cccCCCchhhhccccEEEeccCcHHHHHHHHH
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLDSIVARRWING 153 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~ 153 (478)
...+.+++.|+|+.++-+.+++..++.
T Consensus 64 -----sl~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 64 -----SVSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred -----CHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 245678899999998876667666654
No 235
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.94 E-value=1.4 Score=45.76 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=49.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
+...+|+|||+ |.+|..+++.|-...-.+|+.+|.+ |
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~----------------d-------------------------- 39 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA----------------D-------------------------- 39 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC----------------c--------------------------
Confidence 35679999999 9999999999996533367777752 0
Q ss_pred cccCCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
.......+.++++|+||.|+--..+...+.++.
T Consensus 40 -~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~ 72 (370)
T PRK08818 40 -PGSLDPATLLQRADVLIFSAPIRHTAALIEEYV 72 (370)
T ss_pred -cccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHh
Confidence 000112445778999999987766766676665
No 236
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.94 E-value=0.58 Score=46.94 Aligned_cols=32 Identities=22% Similarity=0.568 Sum_probs=28.2
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+|.|||+|-+|..++.+|+..|. .++++|.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999996 68888754
No 237
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.83 E-value=1.6 Score=41.66 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=28.3
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeC
Confidence 46789999995 8999999999999997 5666653
No 238
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.80 E-value=0.76 Score=44.35 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=31.0
Q ss_pred HhcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 42 LQTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 42 ~L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35889999998 58999999999999998 58888743
No 239
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=90.79 E-value=0.66 Score=53.60 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=35.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSN 84 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sN 84 (478)
..+||+|||+|.-|-+.|..|++.|. ++|++|...++.-+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence 68899999999999999999999996 69999987665444
No 240
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.78 E-value=2.1 Score=42.48 Aligned_cols=80 Identities=14% Similarity=0.298 Sum_probs=51.2
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGF---NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gv---g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
+.+|.+||+|-+|..+++.|...|+ .+|.+.|.+. .+++ .+.+.. .+++.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~-------------------~~~~----~l~~~~-g~~~~--- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV-------------------SNLK----NASDKY-GITIT--- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH-------------------HHHH----HHHHhc-CcEEe---
Confidence 5589999999999999999999985 2466654321 2222 222211 23221
Q ss_pred cccCCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
..+.+..++.|+||.|+-....+..+.++.
T Consensus 55 ----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 55 ----TNNNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred ----CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 223456778999999988766666565543
No 241
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.77 E-value=1.4 Score=47.30 Aligned_cols=94 Identities=19% Similarity=0.315 Sum_probs=53.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHH--HHHHHHHHhhCCCCeEEEEe
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKA--EVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka--~aa~~~l~~~np~v~i~~~~ 121 (478)
.+.+|+|||+|..|.+.|..|.+.|. +++|+|... .++.+.-+.-.....++. ....+.++++ ++++....
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~----~~gG~l~~gip~~~~~~~~~~~~~~~~~~~--Gv~~~~~~ 212 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHP----EIGGLLTFGIPSFKLDKAVLSRRREIFTAM--GIEFHLNC 212 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC----CCCceeeecCccccCCHHHHHHHHHHHHHC--CCEEECCC
Confidence 47899999999999999999999998 589988653 233232221111111221 1222334443 34443211
Q ss_pred cccC-C-CchhhhccccEEEeccCcH
Q psy7810 122 CKIQ-D-YDSDFYQQFHIIVCGLDSI 145 (478)
Q Consensus 122 ~~i~-~-~~~~~~~~~DlVi~~~Dn~ 145 (478)
.+. + ...+...+||.||.|+...
T Consensus 213 -~v~~~~~~~~~~~~~D~vilAtGa~ 237 (467)
T TIGR01318 213 -EVGRDISLDDLLEDYDAVFLGVGTY 237 (467)
T ss_pred -EeCCccCHHHHHhcCCEEEEEeCCC
Confidence 111 1 1123345789999988763
No 242
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.71 E-value=0.72 Score=44.52 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=37.3
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIG 97 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG 97 (478)
|+.++|+|.|.|.+|..+++.|...|+.=+.+.|.+ ..+|.++-+-
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~---------g~~~~~~Gld 74 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD---------GTIYNPDGLD 74 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---------CeEECCCCCC
Confidence 589999999999999999999999998766688764 3356666454
No 243
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=90.70 E-value=1.3 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHh
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALM 67 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~ 67 (478)
...||.|||+|.+|..++++|...
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~ 28 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG 28 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhc
Confidence 456999999999999999999864
No 244
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.64 E-value=1.3 Score=42.67 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=29.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~ 42 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRR 42 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999985 9999999999999997 57777654
No 245
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.61 E-value=1.2 Score=49.30 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=59.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++. + ..++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g--~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKY--G--YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhC--C--CeEEEeeC
Confidence 5689999999999999999999998 6899998762 222 22222 2 23344444
Q ss_pred CCCc---hhhhccccEEEeccCcHHHHHHHHHHHHH
Q psy7810 125 QDYD---SDFYQQFHIIVCGLDSIVARRWINGMLLS 157 (478)
Q Consensus 125 ~~~~---~~~~~~~DlVi~~~Dn~~~r~~in~~~~~ 157 (478)
.+.+ ..-++++|.||.++|+.+.-..+-..++.
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~ 487 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQ 487 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3321 12356899999999998877777666663
No 246
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=90.56 E-value=0.58 Score=45.23 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=31.2
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
+.+++|+|.| .||||.++++.|+..|. ++.++|.+.-
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~ 41 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPA 41 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHH
Confidence 4678999998 59999999999999997 6888876543
No 247
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.55 E-value=2.4 Score=43.38 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=58.8
Q ss_pred CeEEEECCchHHHHHHHHHHH--------hCCC--eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIAL--------MGFN--EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGV 115 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal--------~Gvg--~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v 115 (478)
-+|.|+|+|.+|+.+++.|.. .|+. =+.+.|.+. .+|.++.+.-.+. .+..++...-.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~~~l---~~~~~~~~~~~ 70 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDLREA---KEVKENFGKLS 70 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCChHHH---HHhhhccCchh
Confidence 589999999999999999877 5643 234445331 2334444433332 22222211111
Q ss_pred eEEEEecccCCCchhhh--ccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeee
Q psy7810 116 KVIPHFCKIQDYDSDFY--QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGT 180 (478)
Q Consensus 116 ~i~~~~~~i~~~~~~~~--~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~ 180 (478)
.+...........++++ ..+|+||+++....++.++.++.. .++++|.+..
T Consensus 71 ~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~--------------~G~~VVtanK 123 (336)
T PRK08374 71 NWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALK--------------EGKSVVTSNK 123 (336)
T ss_pred hccccccccCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHh--------------hCCcEEECCH
Confidence 11100000001224555 478999999977666666665553 5677776543
No 248
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.49 E-value=0.36 Score=48.18 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=27.1
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|.|||+|-+|+.++.+|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 67887643
No 249
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.42 E-value=2.4 Score=43.06 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=30.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+.+|+|.|+|++|...+..+...|+.++.++|..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~ 203 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS 203 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 46799999999999999999889999888888744
No 250
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.40 E-value=1.6 Score=43.80 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=50.5
Q ss_pred HhcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 42 LQTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 42 ~L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
.|.+++++|.| .||||.++++.|+..|. ++.++|... ..+++.+++.++.. ..++..+
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~------------------~~~~~~~~~~i~~~--g~~~~~~ 67 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS------------------ALDASDVLDEIRAA--GAKAVAV 67 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc------------------hhHHHHHHHHHHhc--CCeEEEE
Confidence 45788999998 57999999999999997 577766421 12344445555543 3355556
Q ss_pred ecccCCCc--hhh------hccccEEEecc
Q psy7810 121 FCKIQDYD--SDF------YQQFHIIVCGL 142 (478)
Q Consensus 121 ~~~i~~~~--~~~------~~~~DlVi~~~ 142 (478)
..++.+.. ..+ +...|+||++.
T Consensus 68 ~~Dv~d~~~~~~~~~~~~~~g~iD~li~nA 97 (306)
T PRK07792 68 AGDISQRATADELVATAVGLGGLDIVVNNA 97 (306)
T ss_pred eCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 66665421 111 34578887753
No 251
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.38 E-value=0.35 Score=52.60 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=31.0
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+++++|+|+|+||+|..+++.|+..|+ +|++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 467899999999999999999999999 8999864
No 252
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.38 E-value=1.4 Score=47.04 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.9
Q ss_pred HHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 41 FLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 41 ~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.-+.+++|+|+|.|+.|..+++.|...|. .+++.|...
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 34578899999999999999999999997 799988554
No 253
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.38 E-value=0.76 Score=45.20 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=27.8
Q ss_pred EEEECC-chHHHHHHHHHHHhC--C-CeEEEEeCCc
Q psy7810 48 VLIIGA-GGLGCELLKDIALMG--F-NEIHVIDMDT 79 (478)
Q Consensus 48 VlvvG~-GglG~eiaknLal~G--v-g~i~iiD~D~ 79 (478)
|.|||+ |.+|..++..|+..| . .+|+++|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999999 4 5899998544
No 254
>PRK07109 short chain dehydrogenase; Provisional
Probab=90.36 E-value=1.4 Score=44.79 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=29.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~ 41 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARG 41 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 46788999985 8999999999999996 68887743
No 255
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.36 E-value=0.39 Score=47.94 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=30.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.-++|.|||+|.+|..++.+|+.+|. .++++|.+
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 34689999999999999999999997 79999865
No 256
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.35 E-value=1.9 Score=41.09 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=50.3
Q ss_pred eEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC--CCeEEEEecc
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP--GVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np--~v~i~~~~~~ 123 (478)
||.||| +|.+|+.+++.|+..| .+++++|.+. .|++.+++....... .+.+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~-- 59 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTG-- 59 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEE--
Confidence 799997 8999999999999999 5777776432 223333222211111 11111111
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
....+..+++|+||.|+-....+..+.++
T Consensus 60 --~~~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 60 --ADNAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred --eChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 11244577899999998776665555443
No 257
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.33 E-value=1.4 Score=43.36 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=29.4
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4677899997 78999999999999997 57777644
No 258
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.31 E-value=0.39 Score=47.82 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.4
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|+|+|+|++|+.++..|+.+|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 79999999999999999999994 79999864
No 259
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.28 E-value=3.5 Score=41.92 Aligned_cols=32 Identities=41% Similarity=0.406 Sum_probs=25.9
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.+|+|.|+ |-+|+++++.|...|=-+|+.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 37999996 999999999999763136888774
No 260
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.27 E-value=1.7 Score=48.41 Aligned_cols=93 Identities=20% Similarity=0.325 Sum_probs=54.6
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCC--ccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQK--DIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~--diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
..++|+|||+|..|-..|..|++.|. +++|+|.... ++...-|.-. .+-+.-.+.-.+.++++ ++++....
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~----~GG~l~~gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPE----IGGMLTFGIPPFKLDKTVLSQRREIFTAM--GIDFHLNC 381 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCC----CCCeeeccCCcccCCHHHHHHHHHHHHHC--CeEEEcCC
Confidence 57899999999999999999999998 6999986542 1211111111 11122222223344444 35544322
Q ss_pred cccC-CCc-hhhhccccEEEeccCc
Q psy7810 122 CKIQ-DYD-SDFYQQFHIIVCGLDS 144 (478)
Q Consensus 122 ~~i~-~~~-~~~~~~~DlVi~~~Dn 144 (478)
.+. +.. .++..+||.||.++..
T Consensus 382 -~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 -EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred -ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 121 111 3445689999998875
No 261
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.25 E-value=0.5 Score=41.96 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=48.5
Q ss_pred EEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe------
Q psy7810 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF------ 121 (478)
Q Consensus 48 VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~------ 121 (478)
|+|+|+|++|+.+|-.|..+|. ++++++... ..+. +++. .+.++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~-----------------------~~~~--g~~~~~~~~~~~~~ 53 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEA-----------------------IKEQ--GLTITGPDGDETVQ 53 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHH-----------------------HHHH--CEEEEETTEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHh-----------------------hhhe--eEEEEecccceecc
Confidence 7899999999999999999886 588876433 1111 2221 12221111
Q ss_pred -cccCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 122 -CKIQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 122 -~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
.............+|+||.|+-.......+..+
T Consensus 54 ~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l 87 (151)
T PF02558_consen 54 PPIVISAPSADAGPYDLVIVAVKAYQLEQALQSL 87 (151)
T ss_dssp EEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHH
T ss_pred cccccCcchhccCCCcEEEEEecccchHHHHHHH
Confidence 000011123467899999999887777766664
No 262
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.23 E-value=1.5 Score=51.02 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=57.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHH--HHHHHHHHhhCCCCeEEEEe
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKA--EVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka--~aa~~~l~~~np~v~i~~~~ 121 (478)
.++||+|||+|.-|...|..|++.|. ++||+|... .++-+.-|+--+.-.+|. +.-.+.++++ ++++....
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~--Gv~f~~n~ 377 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPNQLIDDVVEKIKLL--GGRFVKNF 377 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChHHHHHHHHHHHHhh--cCeEEEeE
Confidence 47899999999999999999999997 699998542 334333333222223332 2222344444 46655422
Q ss_pred cccC-CCc-hhhhc-cccEEEeccCc
Q psy7810 122 CKIQ-DYD-SDFYQ-QFHIIVCGLDS 144 (478)
Q Consensus 122 ~~i~-~~~-~~~~~-~~DlVi~~~Dn 144 (478)
. +. +.. +++.+ +||.||.|+..
T Consensus 378 ~-vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 378 V-VGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred E-eccEEeHHHhccccCCEEEEeCCC
Confidence 1 11 112 34444 69999998876
No 263
>PRK07074 short chain dehydrogenase; Provisional
Probab=90.22 E-value=1.5 Score=42.30 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=28.3
Q ss_pred CCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~ 35 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDID 35 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 568999996 8999999999999996 68888754
No 264
>PLN02240 UDP-glucose 4-epimerase
Probab=90.18 E-value=1.3 Score=45.03 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=29.3
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
|++++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999985 8999999999999995 7888873
No 265
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.10 E-value=1.7 Score=43.71 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=27.1
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++|+|.| .|+||+++++.|+..|. ++.+++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 57899998 59999999999999996 56665544
No 266
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.10 E-value=1.3 Score=45.59 Aligned_cols=106 Identities=14% Similarity=0.319 Sum_probs=64.7
Q ss_pred cCCeEEEECC-chHHHHHHHHHHH-hCC--CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhC-CCCeEE
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIAL-MGF--NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRI-PGVKVI 118 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal-~Gv--g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~n-p~v~i~ 118 (478)
++.+|.|||+ |.+|.|+++.|.. -.+ ++|.++.. +...|+.= .+. ..+.+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS---------------~~saGk~~---------~~~~~~l~v~ 59 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS---------------KRSAGKTV---------QFKGREIIIQ 59 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC---------------cccCCCCe---------eeCCcceEEE
Confidence 3469999996 8899999999984 554 35555532 33445431 111 112222
Q ss_pred EEecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEe-eeeceeceEEEEcCCC
Q psy7810 119 PHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDG-GTEGFKGNARVILPGM 194 (478)
Q Consensus 119 ~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~-g~~G~~G~v~~~~p~~ 194 (478)
+.+.+-++++|+|+.|+.+..++.+...+. +.+.++||- +.+-+.-.+...+|+.
T Consensus 60 -------~~~~~~~~~~Divf~a~~~~~s~~~~~~~~--------------~~G~~VID~Ss~fR~~~~vplvvPEv 115 (347)
T PRK06728 60 -------EAKINSFEGVDIAFFSAGGEVSRQFVNQAV--------------SSGAIVIDNTSEYRMAHDVPLVVPEV 115 (347)
T ss_pred -------eCCHHHhcCCCEEEECCChHHHHHHHHHHH--------------HCCCEEEECchhhcCCCCCCeEeCCc
Confidence 122223478999999999888888887765 356788873 4444444444555543
No 267
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.08 E-value=2 Score=45.73 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
...+|+|||+|..|.+.|..|++.|. +++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 56799999999999999999999997 69999964
No 268
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.07 E-value=0.47 Score=47.70 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=31.9
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 468999999999999999999999997 89998865
No 269
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.04 E-value=1.5 Score=42.84 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=46.4
Q ss_pred eEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg--~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
+|.|||+|-+|..+++.|...|.. .+.+.|. ...|++. +.+..+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------------------~~~~~~~----l~~~~~~~~~~------ 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------------------NAQIAAR----LAERFPKVRIA------ 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------------------CHHHHHH----HHHHcCCceEe------
Confidence 699999999999999999998852 2333321 1123332 22332333221
Q ss_pred CCCchhhhccccEEEeccCcHHHHHHHH
Q psy7810 125 QDYDSDFYQQFHIIVCGLDSIVARRWIN 152 (478)
Q Consensus 125 ~~~~~~~~~~~DlVi~~~Dn~~~r~~in 152 (478)
....+..++.|+|+.|+-.......+.
T Consensus 53 -~~~~~~~~~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 53 -KDNQAVVDRSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred -CCHHHHHHhCCEEEEEeCHHHHHHHHH
Confidence 223455778999999988644444443
No 270
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=90.03 E-value=1.1 Score=44.03 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=50.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGF---NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gv---g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
.+.||.|||+|-+|+.+++.|..+|. .++.+.|.+.-. .+ +..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~- 47 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY- 47 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE-
Confidence 34689999999999999999999884 236666543210 00 011
Q ss_pred ecccCCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
...+.+..+++|+||.|+-....+..+.+..
T Consensus 48 ----~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 48 ----LQSNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred ----eCChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1223445678999999988877777666654
No 271
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.03 E-value=1.5 Score=46.64 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=29.4
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+||+|||+|+.|...|+.|...|. ++++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999997 788988554
No 272
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.98 E-value=0.46 Score=47.45 Aligned_cols=33 Identities=18% Similarity=0.491 Sum_probs=30.1
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+|.|||+|.+|+.++..|+.+|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999997 799999765
No 273
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.97 E-value=0.44 Score=48.09 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..+|+|||+|++|+.++..|+.+| -.++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 458999999999999999999999 4788887664
No 274
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.96 E-value=2.1 Score=45.14 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rq 88 (478)
-.+|.|||+|-+|..+|.+|+..|. +++.+|.+.-....+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g 45 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRG 45 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCC
Confidence 3689999999999999999999995 799999765544445444
No 275
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=89.86 E-value=2.6 Score=38.28 Aligned_cols=66 Identities=29% Similarity=0.358 Sum_probs=45.3
Q ss_pred EEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 48 VLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 48 VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
|+|+|+ |.+|..+++.|...| -+++.+= |. ..|.+. .+. ++....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~~--~~~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SPG--VEIIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CTT--EEEEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------ccc--cccceeeehh
Confidence 799997 999999999999999 5677642 11 113222 334 4455666554
Q ss_pred Cc--hhhhccccEEEeccC
Q psy7810 127 YD--SDFYQQFHIIVCGLD 143 (478)
Q Consensus 127 ~~--~~~~~~~DlVi~~~D 143 (478)
.. .+.++++|.||.+..
T Consensus 51 ~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp HHHHHHHHTTSSEEEECCH
T ss_pred hhhhhhhhhhcchhhhhhh
Confidence 32 456789999999875
No 276
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=89.84 E-value=0.57 Score=37.89 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEec
Q psy7810 380 QPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVAD 459 (478)
Q Consensus 380 ~~~~~~~~~~~~Tl~~li~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~d 459 (478)
.+....++... |+++|-..|.. -+|+....+.+.+ +....+... ..-++=.++|..+|+++|..|.|.|
T Consensus 14 ~~~ekr~~~~~-Tv~eLK~kl~~--~~Gi~~~~m~L~l-------~~~~~~~~~-~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 14 RSVEKRFPKSI-TVSELKQKLEK--LTGIPPSDMRLQL-------KSDKDDSKI-EELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp SEEEEEEETTS-BHHHHHHHHHH--HHTS-TTTEEEEE-------E-TSSSSEE-EESSGSSSBCCHHT-STTEEEEEEE
T ss_pred eeEEEEcCCCC-CHHHHHHHHHH--HhCCCcccEEEEE-------EecCCCccc-cccCCCccEeecCCCCCCCEEEEEe
Confidence 35566677664 99999999877 7888766554432 201100000 0113447899999999999999999
Q ss_pred CCC
Q psy7810 460 STT 462 (478)
Q Consensus 460 ~~~ 462 (478)
..-
T Consensus 83 ~~p 85 (87)
T PF14560_consen 83 TNP 85 (87)
T ss_dssp -T-
T ss_pred CCC
Confidence 764
No 277
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.84 E-value=0.41 Score=48.29 Aligned_cols=33 Identities=39% Similarity=0.657 Sum_probs=30.3
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFN-EIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg-~i~iiD~D 78 (478)
.||.|||+|.+|+.+|..|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999843
No 278
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.81 E-value=1.7 Score=41.80 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=31.1
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+.+++|+|.| .|+||..+++.|+..|. ++.+++.+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~ 45 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNA 45 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 5788999998 58999999999999997 788888653
No 279
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.80 E-value=1.1 Score=42.35 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=29.5
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5678999995 89999999999999986 8888765
No 280
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.78 E-value=0.45 Score=50.16 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=32.8
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+.+++|+|+|+|.+|..+++.|...|. +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 578999999999999999999999998 799988664
No 281
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=89.73 E-value=1.7 Score=44.69 Aligned_cols=107 Identities=14% Similarity=0.258 Sum_probs=63.8
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCC--eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFN--EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg--~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
+..||+|+| .|.+|.|+++.|...+.- .+..+. +....|+.=.. ....+..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~----------~~~~~~v- 59 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF----------EGRDYTV- 59 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee----------cCceeEE-
Confidence 457999999 577899999999986653 444442 22233332111 1111111
Q ss_pred ecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEee-eeceeceEEEEcCCC
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGG-TEGFKGNARVILPGM 194 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g-~~G~~G~v~~~~p~~ 194 (478)
.+...+-+.++|+|+.|+.+..++.+..++.. .+..+||-+ .+-+.-.+...+|+.
T Consensus 60 ----~~~~~~~~~~~D~vf~a~p~~~s~~~~~~~~~--------------~g~~VIDlS~~fR~~~~~p~~vPEv 116 (344)
T PLN02383 60 ----EELTEDSFDGVDIALFSAGGSISKKFGPIAVD--------------KGAVVVDNSSAFRMEEGVPLVIPEV 116 (344)
T ss_pred ----EeCCHHHHcCCCEEEECCCcHHHHHHHHHHHh--------------CCCEEEECCchhhcCCCCceECCCc
Confidence 11122234789999999998888888877653 467788743 444443444455543
No 282
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.72 E-value=1.6 Score=46.08 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=54.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
...+|+|+|+|.+|..+++.|...|. .++++|.|.= + .+.+++..+++. ...++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~----~~~~~~~~~~~~--~i~gd 283 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------R----AEELAEELPNTL--VLHGD 283 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------H----HHHHHHHCCCCe--EEECC
Confidence 57899999999999999999999887 6899986541 1 122222223333 23333
Q ss_pred cCCCc---hhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 124 IQDYD---SDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 124 i~~~~---~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
..+.. ..-++++|.||.++++...-..+-..++
T Consensus 284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~ 319 (453)
T PRK09496 284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLAK 319 (453)
T ss_pred CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHH
Confidence 32211 2235789999999887655444434443
No 283
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.68 E-value=1.4 Score=44.80 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=30.0
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~ 40 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARD 40 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 46789999997 8999999999999997 58887753
No 284
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.68 E-value=2 Score=43.87 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=29.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.+.+|+|+|+|++|...+..+-.+|+ ++.+++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999889998 6888775
No 285
>PRK08278 short chain dehydrogenase; Provisional
Probab=89.67 E-value=2.1 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.1
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.| .||||.++++.|+..|. ++.+++..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 4678999998 68999999999999997 78888765
No 286
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.66 E-value=1.2 Score=45.55 Aligned_cols=88 Identities=18% Similarity=0.342 Sum_probs=54.6
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCCCe--EEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGFNE--IHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gvg~--i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
.+|+|+|+ |-+|.|+++.|...+.-. +..+- +.+..|++=. + ....+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~---------------s~~~aG~~l~---------~-~~~~l~---- 55 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLA---------------SSESAGHSVP---------F-AGKNLR---- 55 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE---------------CcccCCCeec---------c-CCcceE----
Confidence 58999996 889999999999766543 33332 2233454311 1 111111
Q ss_pred ccCCCc-hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEe
Q psy7810 123 KIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDG 178 (478)
Q Consensus 123 ~i~~~~-~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~ 178 (478)
+.+.. .+ ++++|+|+.|+.+..++.++..+. +.++.+||-
T Consensus 56 -~~~~~~~~-~~~vD~vFla~p~~~s~~~v~~~~--------------~~G~~VIDl 96 (336)
T PRK05671 56 -VREVDSFD-FSQVQLAFFAAGAAVSRSFAEKAR--------------AAGCSVIDL 96 (336)
T ss_pred -EeeCChHH-hcCCCEEEEcCCHHHHHHHHHHHH--------------HCCCeEEEC
Confidence 11112 23 489999999999877777777664 356777774
No 287
>PRK09072 short chain dehydrogenase; Provisional
Probab=89.65 E-value=1.6 Score=42.24 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=29.9
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 3678899998 59999999999999996 68888754
No 288
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.64 E-value=2 Score=45.60 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=30.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+++|+|+|.|+.|..+|+.|...|. .+++.|...
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~ 38 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL 38 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 57799999999999999999999996 688888543
No 289
>PLN02852 ferredoxin-NADP+ reductase
Probab=89.63 E-value=1.9 Score=46.51 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=54.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHH--hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHH--HHHHHHHhhCCCCeEEE
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIAL--MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAE--VAAKFINSRIPGVKVIP 119 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal--~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~--aa~~~l~~~np~v~i~~ 119 (478)
..++|+|||+|.-|.+.|..|+. .|. +|+|+|... .+-.+.|.-. .+.+ -..|.. ...+.+.. +.+++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p-~pgGlvr~gv-aP~~-~~~k~v~~~~~~~~~~--~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP-TPFGLVRSGV-APDH-PETKNVTNQFSRVATD--DRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC-CCcceEeecc-CCCc-chhHHHHHHHHHHHHH--CCeEEEc
Confidence 46799999999999999999997 564 799999766 3444544321 1111 122221 11111222 3444332
Q ss_pred EecccC-C-CchhhhccccEEEeccCc
Q psy7810 120 HFCKIQ-D-YDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 120 ~~~~i~-~-~~~~~~~~~DlVi~~~Dn 144 (478)
+..+. + ...++...||.||.|+..
T Consensus 99 -nv~vg~dvtl~~L~~~yDaVIlAtGa 124 (491)
T PLN02852 99 -NVTLGRDVSLSELRDLYHVVVLAYGA 124 (491)
T ss_pred -CEEECccccHHHHhhhCCEEEEecCC
Confidence 11111 1 124556789999998775
No 290
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.60 E-value=1.3 Score=45.39 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=53.3
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCCCeE-EEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGFNEI-HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gvg~i-~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.||+|+|+ |.+|.++++.|....--++ .+.|.. ..|+. +.+..|.+... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~~--------l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGKP--------LSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCcc--------hHHhCcccccc-cCce
Confidence 58999998 8899999999997633344 333311 11111 11111211100 0111
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEee
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGG 179 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g 179 (478)
+.+.....+.+.|+|+.|+.+.....++-.+. +.++.+||.+
T Consensus 58 ~~~~~~~~~~~vD~Vf~alP~~~~~~~v~~a~--------------~aG~~VID~S 99 (343)
T PRK00436 58 LEPLDPEILAGADVVFLALPHGVSMDLAPQLL--------------EAGVKVIDLS 99 (343)
T ss_pred eecCCHHHhcCCCEEEECCCcHHHHHHHHHHH--------------hCCCEEEECC
Confidence 12222224568999999999876666666554 3577777753
No 291
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.58 E-value=0.71 Score=44.61 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=31.2
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
|.+++|+|+|+ ||||.++++.|+..|. ++.++|.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~ 41 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDP 41 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 57889999996 9999999999999996 688887654
No 292
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=89.58 E-value=0.45 Score=50.15 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=29.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
..+|+|||+|-+|++.|..|++.|+ +++|+|+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~r 34 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMR 34 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc
Confidence 4589999999999999999999997 69999853
No 293
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.50 E-value=0.49 Score=47.14 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=30.1
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
++|.|||+|-+|..+|.+|+.+|. +++++|.+.-
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 479999999999999999999996 6999987643
No 294
>PRK05855 short chain dehydrogenase; Validated
Probab=89.42 E-value=1.4 Score=47.71 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=29.9
Q ss_pred HhcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 42 LQTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 42 ~L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.+++.+++|+|+ ||||.++++.|+..|.. +.+++.
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 357889999985 99999999999999985 877774
No 295
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.38 E-value=2.1 Score=41.31 Aligned_cols=35 Identities=17% Similarity=0.407 Sum_probs=29.6
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.++.++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~ 41 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLR 41 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4678899998 67999999999999997 67777753
No 296
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.35 E-value=0.72 Score=44.88 Aligned_cols=36 Identities=14% Similarity=0.386 Sum_probs=31.1
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|.|+ ||||.++++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 40 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDA 40 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 46789999985 9999999999999997 788887653
No 297
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.34 E-value=2.1 Score=40.85 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=28.2
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+.+++|+|.|+ ||||..+++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r 38 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYR 38 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999996 8999999999999996 5666553
No 298
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.32 E-value=1.3 Score=45.49 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=50.2
Q ss_pred eEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccC
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQ 125 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~ 125 (478)
+|+||| .|.+|.|+++.|...|.-.+.|+= +.+..+.|+.=. + ....+. ..++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~~--~~~~- 54 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKELE--VNEA- 54 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeEE--EEeC-
Confidence 689999 788999999999987765443321 123333443211 1 112222 1222
Q ss_pred CCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 126 DYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 126 ~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
..+-++++|+|+.|+.+..++.+..++.
T Consensus 55 --~~~~~~~~D~v~~a~g~~~s~~~a~~~~ 82 (339)
T TIGR01296 55 --KIESFEGIDIALFSAGGSVSKEFAPKAA 82 (339)
T ss_pred --ChHHhcCCCEEEECCCHHHHHHHHHHHH
Confidence 1223489999999999988888877665
No 299
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.28 E-value=0.37 Score=54.44 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.0
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++|.|||+|-.|+.||..++.+|+ .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 589999999999999999999997 799999653
No 300
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=89.28 E-value=0.64 Score=48.47 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHh-CCCeEEEEeCCcCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALM-GFNEIHVIDMDTIDL 82 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~-Gvg~i~iiD~D~v~~ 82 (478)
+...|+|||+|-+|+.+|..|++. |..+++|+|.+.+--
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~ 68 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGG 68 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccC
Confidence 355799999999999999999985 877899999887643
No 301
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=89.27 E-value=1.9 Score=41.34 Aligned_cols=31 Identities=42% Similarity=0.595 Sum_probs=22.5
Q ss_pred eEEEECCchHHHHHHHHHHHhC---CCeEEEEeCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMG---FNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~G---vg~i~iiD~D 78 (478)
+|.+||||+||..+++.+- -| +.-+-+.|.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D~~ 35 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVR-DGRVDFELVAVYDRD 35 (255)
T ss_pred eEEEEeccHHHHHHHHHHh-cCCcceeEEEEecCC
Confidence 7999999999999998654 44 4444554543
No 302
>PRK06398 aldose dehydrogenase; Validated
Probab=89.26 E-value=1.6 Score=42.38 Aligned_cols=75 Identities=9% Similarity=0.227 Sum_probs=49.1
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchH-HHHHHHHHHhhCCCCeEEEE
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSK-AEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~K-a~aa~~~l~~~np~v~i~~~ 120 (478)
|++++|+|.| .||||.++++.|+..|. ++.+++.+.-+.. +..+-.-|+..+. .+.+.+.+.+....+++-.+
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN 78 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999998 57999999999999996 7888886543221 2223345776654 34455555555555555555
Q ss_pred ec
Q psy7810 121 FC 122 (478)
Q Consensus 121 ~~ 122 (478)
..
T Consensus 79 ~A 80 (258)
T PRK06398 79 NA 80 (258)
T ss_pred CC
Confidence 43
No 303
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=89.15 E-value=3.7 Score=40.50 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=25.5
Q ss_pred eEEEECC-chHHHHHHHHHHHhCC-CeEEEEeC
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGF-NEIHVIDM 77 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gv-g~i~iiD~ 77 (478)
+|+|.|+ |++|.++++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 9999999999999873 36777764
No 304
>PRK06198 short chain dehydrogenase; Provisional
Probab=89.14 E-value=1 Score=43.53 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=31.5
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|+|+ ||||..+++.|+..|..++.+++.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 47889999994 8999999999999998778888764
No 305
>PRK07677 short chain dehydrogenase; Provisional
Probab=89.13 E-value=2 Score=41.40 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.0
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789998 57899999999999998 78888765
No 306
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.11 E-value=0.58 Score=47.11 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=29.3
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++|.|||+|.+|+.++..|+.+|. .++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 579999999999999999999997 689988543
No 307
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=89.11 E-value=1.7 Score=41.58 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=29.3
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 3678999998 58999999999999987 57777644
No 308
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=89.09 E-value=0.78 Score=44.00 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=31.4
Q ss_pred HhcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 42 LQTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 42 ~L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 56889999997 77899999999999997 78888865
No 309
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.09 E-value=0.9 Score=43.90 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=29.9
Q ss_pred hcCCeEEEECCc---hHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAG---GLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~G---glG~eiaknLal~Gvg~i~iiD~D 78 (478)
|+.++|+|.|++ |||..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 367789999985 799999999999997 78888764
No 310
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.08 E-value=0.89 Score=44.51 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=30.2
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46788999985 8999999999999998 68888754
No 311
>KOG0409|consensus
Probab=88.97 E-value=1.2 Score=44.40 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=29.3
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD 76 (478)
..+|-.||+|-.|+.+++||..+|. ++|+.|
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~-kVtV~d 65 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGY-KVTVYD 65 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCC-EEEEEe
Confidence 7899999999999999999999997 699988
No 312
>PRK07102 short chain dehydrogenase; Provisional
Probab=88.90 E-value=2.6 Score=40.24 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.5
Q ss_pred CeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4789998 69999999999999996 68888754
No 313
>KOG0024|consensus
Probab=88.81 E-value=2 Score=43.35 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..++|||.|||.+|--...-+-.+|..+|.++|-..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA 204 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence 589999999999999998888899999999998544
No 314
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=88.80 E-value=1.7 Score=44.48 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=58.2
Q ss_pred cCCeEEEECC-chHHHHHHHHHHH--hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEE
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIAL--MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal--~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~ 120 (478)
+..+|.|||+ |-+|.|+++.|.. --+.+|..+-.+ ...|+.=. +. .-.+.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~---------------~saG~~~~------~~--~~~~~v~-- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE---------------ESAGETLR------FG--GKSVTVQ-- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc---------------CcCCceEE------EC--CcceEEE--
Confidence 4679999997 8899999999998 456677766332 23333211 00 1122332
Q ss_pred ecccCCCchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEe
Q psy7810 121 FCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDG 178 (478)
Q Consensus 121 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~ 178 (478)
.++ ..-|+++|+|+.|+.+..++.+..++.. .+..+||-
T Consensus 58 --~~~---~~~~~~~Dvvf~a~p~~~s~~~~~~~~~--------------~g~~VIDl 96 (336)
T PRK08040 58 --DAA---EFDWSQAQLAFFVAGREASAAYAEEATN--------------AGCLVIDS 96 (336)
T ss_pred --eCc---hhhccCCCEEEECCCHHHHHHHHHHHHH--------------CCCEEEEC
Confidence 111 1224789999999998888888777653 46777774
No 315
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.77 E-value=0.64 Score=46.32 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=29.2
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999996 69999855
No 316
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=88.73 E-value=1.6 Score=44.15 Aligned_cols=33 Identities=36% Similarity=0.414 Sum_probs=29.6
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCC-CeEEEEeCC
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGF-NEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gv-g~i~iiD~D 78 (478)
.||.|+|+ |.+|..++..|+..|+ ++|+++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 38999998 9999999999999997 479999974
No 317
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.67 E-value=0.61 Score=47.02 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=29.5
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|.|||+|-+|+.++.+|+..|. +++++|.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 79999999999999999999997 799998764
No 318
>PRK00811 spermidine synthase; Provisional
Probab=88.66 E-value=1.1 Score=44.61 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=24.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
...+||++|+|+ |.-....|...++.++++||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 467999999975 33333334445899999999775
No 319
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=88.62 E-value=0.59 Score=47.97 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 7999998764
No 320
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=88.62 E-value=2.2 Score=42.06 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=51.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEE---EEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIH---VIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~---iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
..||.|||||.||..|++.|..-+...+. +.|.+.-...++. +..++-.--+.+....|++=|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCC
Confidence 46899999999999999998654332232 3333221111110 1111111122233344555555432
Q ss_pred c-ccCCCchhhhc-cccEEEecc---CcHHHHHHHHHHHH
Q psy7810 122 C-KIQDYDSDFYQ-QFHIIVCGL---DSIVARRWINGMLL 156 (478)
Q Consensus 122 ~-~i~~~~~~~~~-~~DlVi~~~---Dn~~~r~~in~~~~ 156 (478)
. -+.++...+++ +.|+|+..+ -+.+.+..+-+.+.
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~ 111 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAE 111 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHH
Confidence 2 22344455555 678777653 33445566666665
No 321
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.61 E-value=2.2 Score=46.68 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+-+|+|+|+|.+|.++++.|...|. .+++||.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 5799999999999999999999996 689999775
No 322
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.60 E-value=0.64 Score=48.27 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
...+|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 56789999999999999999999998 69999864
No 323
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=88.60 E-value=1.1 Score=47.60 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=33.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID 81 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~ 81 (478)
.++||+|+|+|..|..+++.|...| -.+++.|.+.-.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 4899999999999999999999999 589999976655
No 324
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.57 E-value=0.66 Score=48.78 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=32.1
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+.+.+|+|+|+|.+|..+++.+...|. ++.++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 468899999999999999999999998 788888654
No 325
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.56 E-value=0.65 Score=47.35 Aligned_cols=79 Identities=23% Similarity=0.157 Sum_probs=51.5
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|++++|.|||+|.+|..+|++|..+|+ ++.+.+... .|+...+ .+. .+.+
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~~~A---~~~--G~~~---- 64 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSWKKA---EAD--GFEV---- 64 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhHHHH---HHC--CCee----
Confidence 4689999999999999999999999998 566544221 1111111 111 2211
Q ss_pred cccCCCchhhhccccEEEeccCcHHHHHHHHH
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLDSIVARRWING 153 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~ 153 (478)
. ...+..+++|+|+.++-+...+..+++
T Consensus 65 ---~-s~~eaa~~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 65 ---L-TVAEAAKWADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred ---C-CHHHHHhcCCEEEEcCCHHHHHHHHHH
Confidence 1 235678899999999876555555533
No 326
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.52 E-value=1.6 Score=42.09 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=46.3
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchH-HHHHHHHHHhhCCCCeEEEE
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSK-AEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~K-a~aa~~~l~~~np~v~i~~~ 120 (478)
+.+++++|.| .||||.++++.|+..|. ++.++|.+.-. ........+..-|+.... .+.+.+.+.+..+.+.+-.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 81 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE-TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVN 81 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh-hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999998 57999999999999997 68888876422 111112222345665432 23334444444444444444
Q ss_pred e
Q psy7810 121 F 121 (478)
Q Consensus 121 ~ 121 (478)
.
T Consensus 82 ~ 82 (252)
T PRK07856 82 N 82 (252)
T ss_pred C
Confidence 3
No 327
>PRK12827 short chain dehydrogenase; Provisional
Probab=88.47 E-value=2.2 Score=40.56 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=28.9
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
|.+++|+|.| .||||.++++.|+..|. ++++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcC
Confidence 3678999998 68999999999999997 5777773
No 328
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=88.47 E-value=0.65 Score=49.93 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.6
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+++++|+|+|+||+|..+++.|+..|+ +++++|.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 367899999999999999999999998 8888764
No 329
>PLN00106 malate dehydrogenase
Probab=88.46 E-value=0.76 Score=46.80 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=31.8
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGF-NEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gv-g~i~iiD~D~ 79 (478)
...||+|+|+ |.+|+.++..|+..|+ ..|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4579999999 9999999999999887 5799999655
No 330
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=88.41 E-value=3 Score=42.54 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=30.6
Q ss_pred HhcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 42 LQTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 42 ~L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++.++|+|.| +|=||+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34678999999 59999999999999985 68888854
No 331
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.41 E-value=2.6 Score=42.07 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=28.3
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++++|||.| +|.||+++++.|...|. ++++++.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 357899999 69999999999999997 57766654
No 332
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.40 E-value=0.65 Score=48.47 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=30.7
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999996 799999876
No 333
>PRK05717 oxidoreductase; Validated
Probab=88.38 E-value=0.85 Score=44.03 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=30.7
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~ 44 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDR 44 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 4678999998 58999999999999995 788887653
No 334
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.34 E-value=1.2 Score=44.83 Aligned_cols=68 Identities=26% Similarity=0.289 Sum_probs=45.9
Q ss_pred EECCchHHHHHHHHHHHhCC-CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC----CCeEEEEeccc
Q psy7810 50 IIGAGGLGCELLKDIALMGF-NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP----GVKVIPHFCKI 124 (478)
Q Consensus 50 vvG~GglG~eiaknLal~Gv-g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np----~v~i~~~~~~i 124 (478)
|||+|.+|+.+|..|+..|+ ++|.|+|-. ..|++..+.-|+...+ .++|+ .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~--~--- 56 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIR--S--- 56 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEe--c---
Confidence 68999999999999999998 579999842 1234444444444432 23333 1
Q ss_pred CCCchhhhccccEEEeccC
Q psy7810 125 QDYDSDFYQQFHIIVCGLD 143 (478)
Q Consensus 125 ~~~~~~~~~~~DlVi~~~D 143 (478)
.+.+-++++|+||.+..
T Consensus 57 --~~~~~~~daDivVitag 73 (299)
T TIGR01771 57 --GDYSDCKDADLVVITAG 73 (299)
T ss_pred --CCHHHHCCCCEEEECCC
Confidence 23355889999998754
No 335
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=88.32 E-value=1.8 Score=42.71 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=24.6
Q ss_pred eEEEEC-CchHHHHHHHHHHH-hCCCeEEEEe
Q psy7810 47 KVLIIG-AGGLGCELLKDIAL-MGFNEIHVID 76 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal-~Gvg~i~iiD 76 (478)
||.|+| +|.+|..+++.+.. .++.=+-++|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 899999 59999999999986 4665566666
No 336
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.31 E-value=0.66 Score=46.05 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=29.6
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+|.|||+|-+|+.++..|+.+|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 479999999999999999999997 799998553
No 337
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.31 E-value=2.3 Score=41.29 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.3
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+++++++|.| .||||.++++.|+..|.. +.++|.
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~ 42 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI 42 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 4678899998 579999999999999974 777653
No 338
>PRK08264 short chain dehydrogenase; Validated
Probab=88.31 E-value=0.72 Score=43.86 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=31.9
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+.+++|+|.| .|++|.++++.|+..|..++.+++.+.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 3678999998 599999999999999987898887653
No 339
>PRK12744 short chain dehydrogenase; Provisional
Probab=88.29 E-value=3 Score=40.21 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=26.5
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEE
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHV 74 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~i 74 (478)
|++++|+|.| .||||.++++.|+..|..-+.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 4678999998 7899999999999999853433
No 340
>PRK12367 short chain dehydrogenase; Provisional
Probab=88.28 E-value=0.91 Score=44.12 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHhcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 40 SFLQTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 40 ~~~L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
|..+++++++|.|+ ||||.++++.|+..|. ++.+++.+.
T Consensus 9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 9 QSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 44668899999985 7999999999999996 677777653
No 341
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.27 E-value=0.71 Score=46.13 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=29.5
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++|.|||+|-+|+.+|..|+.+|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 689999999999999999999996 789988643
No 342
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=88.26 E-value=0.59 Score=36.10 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=41.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHhcCCCCCccC-CcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEe
Q psy7810 381 PKYLDIESLDMKLSELIELLCQHPSYQMKS-PGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVA 458 (478)
Q Consensus 381 ~~~~~~~~~~~Tl~~li~~l~~~~~~~~~~-~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~ 458 (478)
...+.+.++. |++.+++.+++ +.++.. .++.+.++|. +-+.++++.++|+++|+.|.|.
T Consensus 12 ~~~~~v~~~~-~~~~l~~~~~~--~~~i~~~~~~~l~fdG~----------------~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 12 EIKFKVKPTT-TVSKLIEKYCE--KKGIPPEESIRLIFDGK----------------RLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTS-CCHHHHHHHHH--HHTTTT-TTEEEEETTE----------------EE-TTSCHHHHT-STTEEEEEE
T ss_pred EEEEEECCCC-cHHHHHHHHHH--hhCCCccceEEEEECCE----------------EcCCCCCHHHCCCCCCCEEEEE
Confidence 5567778777 99999999998 677766 4454433331 1233589999999999998763
No 343
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.23 E-value=3.5 Score=42.99 Aligned_cols=34 Identities=21% Similarity=0.532 Sum_probs=28.6
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
...+|+|+|+ |.+|..+++.|...|. ++++++.+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVARE 93 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEec
Confidence 5679999995 9999999999999996 67777644
No 344
>PRK06046 alanine dehydrogenase; Validated
Probab=88.13 E-value=2.6 Score=42.93 Aligned_cols=75 Identities=27% Similarity=0.251 Sum_probs=52.2
Q ss_pred cCCeEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIA-LMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLa-l~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
...+|.|||+|+.|...+.+|. ..++..+.++|.+. .+++.+++.+++.. .+++..+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~-~~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVV-GCDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhc-CceEEEeC-
Confidence 4578999999999999999998 44788888887543 35666666665543 23443322
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
...+.++ .|+|+.|+-+
T Consensus 187 ----~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 ----DIEEACD-CDILVTTTPS 203 (326)
T ss_pred ----CHHHHhh-CCEEEEecCC
Confidence 1234455 9999999865
No 345
>PRK06841 short chain dehydrogenase; Provisional
Probab=88.12 E-value=0.77 Score=44.17 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=30.0
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~ 48 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRS 48 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 47889999995 9999999999999997 58787653
No 346
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=88.11 E-value=2.1 Score=43.92 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=28.7
Q ss_pred hhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 129 SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 129 ~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
.+++.++|+|++|+.....+.....+. ++++++|+.+..
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e~a~~~~--------------~aGk~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAKNKELYE--------------KAGVKAIFQGGE 111 (341)
T ss_pred hHhhccCCEEEECCCchhhHHHHHHHH--------------HCCCEEEEcCCC
Confidence 455678999999998877766665444 467888887653
No 347
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.07 E-value=4 Score=43.45 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=28.7
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
++.||||.| .|-||+.+++.|...|. ++.++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 678999999 59999999999999996 5777764
No 348
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.07 E-value=2.2 Score=43.67 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=49.3
Q ss_pred CeEEEEC-CchHHHHHHHHHHHhCCCe--EEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 46 CKVLIIG-AGGLGCELLKDIALMGFNE--IHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 46 ~~VlvvG-~GglG~eiaknLal~Gvg~--i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
.||+|+| .|.+|.++++.|...|.-. +..+- +..+.|+.=. ++ ...+...
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~---------------s~~~~g~~l~---------~~-g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLA---------------SARSAGKELS---------FK-GKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEE---------------ccccCCCeee---------eC-CceeEEe--
Confidence 4899999 6789999999999877643 33331 2222332210 11 1222221
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
++ ...-+++.|+||.|+....++.+..++.
T Consensus 55 d~---~~~~~~~vDvVf~A~g~g~s~~~~~~~~ 84 (334)
T PRK14874 55 DL---TTFDFSGVDIALFSAGGSVSKKYAPKAA 84 (334)
T ss_pred eC---CHHHHcCCCEEEECCChHHHHHHHHHHH
Confidence 11 1122478999999999988888887765
No 349
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.03 E-value=1.1 Score=39.26 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=44.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
...||.|||+|-+|..+++.|..+|. .|.-+ +. +....++++..+-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGV---------------YS-------RSPASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------SS-------CHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------Ee-------CCcccccccccccccccccc----
Confidence 45699999999999999999999996 34332 11 22334555555555543321
Q ss_pred cCCCchhhhccccEEEeccCcHHHHHHHHHHHHHh
Q psy7810 124 IQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSL 158 (478)
Q Consensus 124 i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l 158 (478)
..+..+.+|+|+.++-+. .|...|..|
T Consensus 62 ----~~~~~~~aDlv~iavpDd----aI~~va~~L 88 (127)
T PF10727_consen 62 ----LEEILRDADLVFIAVPDD----AIAEVAEQL 88 (127)
T ss_dssp ----TTGGGCC-SEEEE-S-CC----HHHHHHHHH
T ss_pred ----cccccccCCEEEEEechH----HHHHHHHHH
Confidence 234678999999997443 344444444
No 350
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.02 E-value=3.4 Score=44.22 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=30.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
...+|+|||+|..|...|..|++.|. +++|+|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 46799999999999999999999997 69999864
No 351
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=87.97 E-value=1.4 Score=46.53 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=56.2
Q ss_pred eEEEECCchHHH-HHHHHHHH----hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 47 KVLIIGAGGLGC-ELLKDIAL----MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 47 ~VlvvG~GglG~-eiaknLal----~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
||.|||+|+.-+ ++++.|+. .++++|.++|-|. ...|.. =...+.+.+.+..+.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 899999999866 78888886 4568999999774 232321 1234455566667777777654
Q ss_pred cccCCCchhhhccccEEEecc--CcHHHH
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL--DSIVAR 148 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~--Dn~~~r 148 (478)
. -.+-++++|+||.+. ...+.|
T Consensus 68 d-----~~~al~gadfVi~~~~vg~~~~r 91 (419)
T cd05296 68 D-----RREALEGADFVFTQIRVGGLEAR 91 (419)
T ss_pred C-----HHHHhCCCCEEEEEEeeCCcchh
Confidence 2 355688999999874 334444
No 352
>PRK08226 short chain dehydrogenase; Provisional
Probab=87.97 E-value=2.3 Score=41.13 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=29.9
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++++|.| .||||..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~ 39 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGA-NLILLDIS 39 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 4678999998 78999999999999997 58888754
No 353
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.96 E-value=2.9 Score=42.65 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=27.5
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.+.+|||.| +|.||+.+++.|+..|. ++.+++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 467999999 58899999999999996 5666554
No 354
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=87.94 E-value=2.6 Score=41.63 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.8
Q ss_pred eEEEECCchHHHHHHHHHHHh
Q psy7810 47 KVLIIGAGGLGCELLKDIALM 67 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~ 67 (478)
||.|||+|.+|..+++.|...
T Consensus 3 rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred EEEEECCCHHHHHHHHHHhhC
Confidence 899999999999999999876
No 355
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=87.93 E-value=0.84 Score=45.78 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.3
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID 81 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~ 81 (478)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 48999999999999999999998 99999999553
No 356
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=87.91 E-value=0.69 Score=46.89 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=28.1
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD 76 (478)
|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 468899999999999999999999997 454433
No 357
>PRK08324 short chain dehydrogenase; Validated
Probab=87.88 E-value=2 Score=48.33 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=29.5
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++|+|.| .||||..+++.|+..|. ++.++|.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~ 455 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD 455 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 457899999 59999999999999997 78888754
No 358
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=87.83 E-value=0.78 Score=43.94 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=29.4
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
|++++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 46889999996 8999999999999997 6777764
No 359
>PRK09330 cell division protein FtsZ; Validated
Probab=87.83 E-value=2.8 Score=43.65 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=36.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCc--CCccCCccccCCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDT--IDLSNLNRQFLFR 92 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg--~i~iiD~D~--v~~sNL~rqfl~~ 92 (478)
...+|-|||+||-||.++.+|...|+. .+..++.|. .+.+...+-.+++
T Consensus 12 ~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG 64 (384)
T PRK09330 12 QGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLG 64 (384)
T ss_pred cCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcC
Confidence 578999999999999999999999986 466667766 3333333333444
No 360
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=87.81 E-value=2.1 Score=42.62 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=24.8
Q ss_pred EECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 50 IIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 50 vvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+||+|.+|..++++|+..|. +++++|.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 58999999999999999996 68888755
No 361
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=87.74 E-value=2.5 Score=40.87 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=29.4
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+++|+|.| .||||..+++.|+..|. ++.+++.+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~ 48 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG 48 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4788999998 58999999999999997 57776654
No 362
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=87.67 E-value=1.5 Score=43.81 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=27.7
Q ss_pred eEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|+|.| .|.+|..+++.|+..|. +++++|...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~~ 34 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRPT 34 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEecC
Confidence 799998 59999999999999995 788888653
No 363
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.59 E-value=1.1 Score=42.89 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=30.0
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999996 9999999999999996 68887754
No 364
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=87.57 E-value=0.65 Score=48.29 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=62.0
Q ss_pred HHhcCCeEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCcCCccCCccccCCCC-Cc--cCchHHHHHHHHHHhhCCCC
Q psy7810 41 FLQTSCKVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDTIDLSNLNRQFLFRQ-KD--IGSSKAEVAAKFINSRIPGV 115 (478)
Q Consensus 41 ~~L~~~~VlvvG~GglG~eiaknLal~Gvg--~i~iiD~D~v~~sNL~rqfl~~~-~d--iG~~Ka~aa~~~l~~~np~v 115 (478)
+.|++.||++.|+|+-|..+++.|..+|+. +|.++|.--+ ++.. +| .++.|...+.+......
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~--- 262 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT--- 262 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc---------ccCCCcccccchHHHHHHHhhhcccc---
Confidence 567999999999999999999999999998 9999997644 2222 22 46667665543333321
Q ss_pred eEEEEecccCCCchhhhccccEEEeccCc-HHHHHHHHHHH
Q psy7810 116 KVIPHFCKIQDYDSDFYQQFHIIVCGLDS-IVARRWINGML 155 (478)
Q Consensus 116 ~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn-~~~r~~in~~~ 155 (478)
. .+-+.+.|+.|.+... .=+..+|.+++
T Consensus 263 ~------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma 291 (432)
T COG0281 263 L------------DLALAGADVLIGVSGVGAFTEEMVKEMA 291 (432)
T ss_pred c------------cccccCCCEEEEcCCCCCcCHHHHHHhc
Confidence 0 1135688888877553 23445666665
No 365
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.54 E-value=0.83 Score=46.10 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=29.8
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.||.|||+|-+|+.+|..|+..|.+++.++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999996
No 366
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.47 E-value=3.1 Score=39.87 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=26.0
Q ss_pred CCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 45 SCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 45 ~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 458999985 8999999999999996 5555543
No 367
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=87.42 E-value=0.77 Score=47.16 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.0
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 7999998654
No 368
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.39 E-value=0.76 Score=49.28 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=31.6
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++.++|+|+|+||.|..+++.|...|. .+++.|.+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 467899999999999999999999998 89998853
No 369
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=87.35 E-value=3.3 Score=40.01 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.5
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD 76 (478)
+++++|+|+| .||||.++++.|+..|. ++.++.
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~ 38 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINY 38 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 4788999998 78999999999999996 455543
No 370
>PRK07825 short chain dehydrogenase; Provisional
Probab=87.34 E-value=1.2 Score=43.55 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.6
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~ 39 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDE 39 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCH
Confidence 35678999995 8999999999999997 477777543
No 371
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=87.31 E-value=4.1 Score=33.70 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=50.9
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEeccc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKI 124 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i 124 (478)
+.+||-+|||. |......+-+..-.+++-+|.+.- -.+.+.+++.+....-+|+.+..++
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~-------------------~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPE-------------------MLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHH-------------------HHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHH-------------------HHHHHHHHHHhcCCCCCeEEEECcc
Confidence 67999999864 544444444445567999985431 2344555665555566777778877
Q ss_pred CCCchhhhccccEEEecc
Q psy7810 125 QDYDSDFYQQFHIIVCGL 142 (478)
Q Consensus 125 ~~~~~~~~~~~DlVi~~~ 142 (478)
....++..+||+|+...
T Consensus 62 -~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 -EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp -HGGTTTSSCEEEEEECS
T ss_pred -ccCcccCCCCCEEEECC
Confidence 44556677899999865
No 372
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=87.31 E-value=1.9 Score=45.00 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=52.9
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+..||+|+|+ |.+|.|+++.|......+|+.+-.+ ...|+. +...+|.+.-. ...
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~saG~~--------i~~~~~~l~~~-~~~ 92 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKAGQS--------FGSVFPHLITQ-DLP 92 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhcCCC--------chhhCccccCc-ccc
Confidence 4569999996 7899999999998866677776432 222322 11122221110 001
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~ 154 (478)
.+.+...+-+++.|+|+.|+.+..++.++..+
T Consensus 93 ~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~~ 124 (381)
T PLN02968 93 NLVAVKDADFSDVDAVFCCLPHGTTQEIIKAL 124 (381)
T ss_pred ceecCCHHHhcCCCEEEEcCCHHHHHHHHHHH
Confidence 11122222248899999999998887777774
No 373
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=87.28 E-value=0.97 Score=46.45 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=35.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDL 82 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~ 82 (478)
...+|+|||+|-+|+.+|..|++.|. +|+++|.+.+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCC
Confidence 57799999999999999999999999 999999988854
No 374
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=87.25 E-value=3.2 Score=40.70 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=29.2
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|+|||+|..|.+.|..|.+.|. +++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL-KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEeccC
Confidence 69999999999999999999997 599999764
No 375
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.24 E-value=0.36 Score=54.48 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
=++|.|||+|-.|+.||..++.+|+ .++++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 3579999999999999999999997 799999664
No 376
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.16 E-value=0.63 Score=52.55 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=29.9
Q ss_pred CCeEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIA-LMGFNEIHVIDMDT 79 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLa-l~Gvg~i~iiD~D~ 79 (478)
-++|.|||+|-.|+.||-.++ .+|+ .++++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 368999999999999999999 8897 799999653
No 377
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=87.15 E-value=4.1 Score=41.48 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=59.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHH-HHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAE-VAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~-aa~~~l~~~np~v~i~~~~~ 122 (478)
....|.|+|+||+|-..+.-...+|.++|.-||...- .-.+.++| +..|.=-+|-. -+.+.++++.+.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~f--GAT~~vn~~~~~~vv~~i~~~T~g-------- 253 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKF--GATHFVNPKEVDDVVEAIVELTDG-------- 253 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhc--CCceeecchhhhhHHHHHHHhcCC--------
Confidence 6789999999999999999999999999999985542 22344443 22222111111 133333333211
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
+.|.+|+|+.|.++.+.--++|.
T Consensus 254 -----------G~d~~~e~~G~~~~~~~al~~~~ 276 (366)
T COG1062 254 -----------GADYAFECVGNVEVMRQALEATH 276 (366)
T ss_pred -----------CCCEEEEccCCHHHHHHHHHHHh
Confidence 78899999999886555555554
No 378
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.12 E-value=2.6 Score=40.92 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=30.3
Q ss_pred hcCCeEEEECC---chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA---GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~---GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++++|.|+ +|||.++++.|+..|. ++.+.|.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~ 42 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFG 42 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCc
Confidence 46789999997 7999999999999997 68888754
No 379
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.11 E-value=1.4 Score=44.36 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=30.9
Q ss_pred hcCCeEEEECCc-hHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAG-GLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~G-glG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|.|||.| -+|..++.+|...|. .+++++..
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~ 192 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSR 192 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCC
Confidence 589999999996 999999999999996 78888644
No 380
>PRK07035 short chain dehydrogenase; Provisional
Probab=87.10 E-value=1.1 Score=43.09 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=30.5
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4678999998 78999999999999997 78888864
No 381
>PLN02494 adenosylhomocysteinase
Probab=87.09 E-value=0.92 Score=48.31 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=32.7
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
+.+++|+|+|+|.+|..+|+.+...|. ++.++|.|..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 568999999999999999999999998 6888886643
No 382
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.09 E-value=2.9 Score=44.37 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=67.0
Q ss_pred eEEEECCchHHH-HHHHHHHHh----CCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 47 KVLIIGAGGLGC-ELLKDIALM----GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 47 ~VlvvG~GglG~-eiaknLal~----Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
||.|||+|+.=+ ++++.|+.. +++.|+++|-|. ..|.+ =...+.+.+++..+.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Tt 66 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTT 66 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEEC
Confidence 899999998633 677777754 457999999554 22211 1223444455566677777654
Q ss_pred cccCCCchhhhccccEEEecc--CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeeceeceE
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL--DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNA 187 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~--Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G~~G~v 187 (478)
. -.+-++++|.||++. +..++|..--+... ++|+ +-..|.|..|..
T Consensus 67 d-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip~-------------kyGi--~gqET~G~GG~~ 114 (437)
T cd05298 67 D-----PEEAFTDADFVFAQIRVGGYAMREQDEKIPL-------------KHGV--VGQETCGPGGFA 114 (437)
T ss_pred C-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHHH-------------HcCc--ceecCccHHHHH
Confidence 3 356688999999974 55667664444444 5665 434666666643
No 383
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=87.04 E-value=0.77 Score=46.72 Aligned_cols=32 Identities=28% Similarity=0.626 Sum_probs=28.9
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.||.|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 69998864
No 384
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.00 E-value=0.94 Score=41.30 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=30.4
Q ss_pred HHHhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 40 SFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 40 ~~~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
..+|..++++|+|.|-+|.-+|+.|...|. ++++.|-|.+
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 346789999999999999999999999995 7999998874
No 385
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.99 E-value=3.6 Score=46.03 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=31.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..++|+|||+|..|...|..|++.|. +++|+|...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 46799999999999999999999997 699998653
No 386
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.95 E-value=0.84 Score=46.50 Aligned_cols=34 Identities=38% Similarity=0.521 Sum_probs=29.7
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCCCe------EEEEeCCc
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGFNE------IHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gvg~------i~iiD~D~ 79 (478)
.||+|+|+ |.+|+.++..|+..|+-. |+|+|.+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 38999999 999999999999988754 99998643
No 387
>PRK06500 short chain dehydrogenase; Provisional
Probab=86.91 E-value=1.3 Score=42.41 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=29.7
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 46789999995 9999999999999997 67777654
No 388
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=86.89 E-value=3.1 Score=46.82 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=29.6
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~ 447 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLN 447 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4578899998 58999999999999997 78888753
No 389
>PLN02650 dihydroflavonol-4-reductase
Probab=86.84 E-value=3.5 Score=41.96 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=27.8
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++|||.| .|.||+++++.|+..|. ++++++.+
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~ 38 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVRD 38 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 356899999 59999999999999996 57766544
No 390
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=86.76 E-value=1.4 Score=35.66 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=42.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEe
Q psy7810 381 PKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVA 458 (478)
Q Consensus 381 ~~~~~~~~~~~Tl~~li~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~ 458 (478)
...+.+.++. |++.+.+.+++ +.++....+. .+|... +-..+.++.++|+++|+.|.|.
T Consensus 23 ~~~~~v~~~~-~l~~l~~~y~~--~~gi~~~~~r--------f~f~G~--------~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 23 EVFFKIKRST-PLKKLMEAYCQ--RQGLSMNSVR--------FLFDGQ--------RIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred EEEEEEcCCC-HHHHHHHHHHH--HhCCCccceE--------EEECCe--------ECCCCCCHHHcCCCCCCEEEEE
Confidence 4567788777 99999999998 6676544433 444321 2223589999999999998775
No 391
>PRK08643 acetoin reductase; Validated
Probab=86.71 E-value=1.9 Score=41.50 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=27.8
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++++|+| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46788887 78999999999999997 68888744
No 392
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.69 E-value=1.9 Score=43.26 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=30.0
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD 76 (478)
+++++|+||| .|-+|..+|.+|...|. .+++.+
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~ 189 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAH 189 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEEC
Confidence 5899999999 99999999999999996 788875
No 393
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.67 E-value=2.8 Score=40.49 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=26.8
Q ss_pred CeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~ 34 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDIN 34 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4799998 58999999999999996 67777644
No 394
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=86.66 E-value=2.5 Score=42.19 Aligned_cols=30 Identities=30% Similarity=0.697 Sum_probs=25.8
Q ss_pred eEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
||||.|+ |-||+++++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 7999995 999999999999888 57777753
No 395
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=86.64 E-value=3.5 Score=39.70 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=28.8
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
|.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r 43 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDI 43 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 5789999998 78999999999999997 5666653
No 396
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.60 E-value=7.7 Score=39.69 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=28.6
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD 76 (478)
...+|+|+|+||+|.-.++....+| .+++.+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~ 197 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT 197 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 3789999999999999999999999 7788876
No 397
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.48 E-value=0.95 Score=47.08 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=30.5
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.|.+++|.|||+|.+|..+++.|...|+ ++...|.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 3689999999999999999999998887 5667763
No 398
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=86.47 E-value=0.95 Score=45.88 Aligned_cols=33 Identities=33% Similarity=0.593 Sum_probs=29.6
Q ss_pred eEEEECC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGF-NEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gv-g~i~iiD~D~ 79 (478)
||.|||+ |.+|+.+|..|+..|+ ..|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6999999 9999999999999998 5799999654
No 399
>PTZ00325 malate dehydrogenase; Provisional
Probab=86.45 E-value=0.93 Score=46.10 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=30.0
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCC-eEEEEeC
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFN-EIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg-~i~iiD~ 77 (478)
+-.||+|+|+ |.+|+.++..|+..|.. .|.|+|-
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 4569999998 99999999999988874 7999996
No 400
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.43 E-value=3.1 Score=42.77 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=29.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
...+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3578999999999999988888899987888763
No 401
>PRK08862 short chain dehydrogenase; Provisional
Probab=86.33 E-value=3.4 Score=39.50 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=27.8
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+++++++|.| .+|+|-++++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r 37 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQ 37 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence 3678999998 55799999999999997 4777653
No 402
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=86.31 E-value=1.1 Score=47.86 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=33.2
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
.|.+++|+|||+|.+|..+|+.|...|. +++++|.|..
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~ 288 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPI 288 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 4689999999999999999999999998 6888876643
No 403
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=86.31 E-value=1.1 Score=44.93 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=28.2
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
.+|+|||+|-.|+.+|..|++.|+ +++|+|...-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI-DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence 479999999999999999999998 5999997553
No 404
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.30 E-value=1 Score=47.22 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=32.4
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+.+++|+|+|+|.+|.-+++.+...|. ++.++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 578999999999999999999999998 688888665
No 405
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=86.30 E-value=0.93 Score=46.68 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=36.9
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeE--EEEeCCcCCcc--CCccccCCCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEI--HVIDMDTIDLS--NLNRQFLFRQ 93 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i--~iiD~D~v~~s--NL~rqfl~~~ 93 (478)
.+.+|.|||+||-||-++..|.+.|+..+ ..+|.|.-.+. ...+-.++++
T Consensus 16 ~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~ 69 (349)
T TIGR00065 16 NKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGK 69 (349)
T ss_pred cCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCC
Confidence 46799999999999999999999998654 55788774333 3333344443
No 406
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=86.28 E-value=0.9 Score=48.05 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=29.2
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+|+|||+|-.|||+|..|++.|+ +++|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeccc
Confidence 379999999999999999999997 688988543
No 407
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=86.24 E-value=6.2 Score=44.21 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=28.7
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++.+|||.| .|-+|+++++.|...|=-+++.+|..
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 788999999 59999999999998632378888754
No 408
>PRK13984 putative oxidoreductase; Provisional
Probab=86.23 E-value=4 Score=45.18 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=31.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
...+|+|||+|..|...|..|.+.|+ +++|+|...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57789999999999999999999997 699988654
No 409
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.18 E-value=1 Score=46.99 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=30.8
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.|++++|.|||+|.+|..+++.|...|+ ++...|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 4689999999999999999999999998 5777774
No 410
>PRK06199 ornithine cyclodeaminase; Validated
Probab=86.12 E-value=4.4 Score=42.25 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCeEEEECCchHHHHHHHHHHHh--CCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC-eEEEEe
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALM--GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGV-KVIPHF 121 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~--Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v-~i~~~~ 121 (478)
.+++.|+|+|.-+-..++.++.. ++.+|.++|.+. .|+++.++++.+..+++ ++.+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~-------------------~~a~~f~~~~~~~~~~~~~v~~~- 214 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQ-------------------KSLDSFATWVAETYPQITNVEVV- 214 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCH-------------------HHHHHHHHHHHHhcCCCceEEEe-
Confidence 57899999999999999998864 488898876433 47888888888776654 35542
Q ss_pred cccCCCchhhhccccEEEeccCc
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.++++|+|+.|+.+
T Consensus 215 ----~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 215 ----DSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred ----CCHHHHHcCCCEEEEccCC
Confidence 2245668899999998764
No 411
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=86.12 E-value=3.3 Score=48.33 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=31.6
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..++|+|||+|.-|...|..|++.|. +++|+|...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 57899999999999999999999997 799998653
No 412
>PRK08303 short chain dehydrogenase; Provisional
Probab=86.12 E-value=2.1 Score=43.05 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.1
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|+++.|+|.|+ +|||.++++.|+..|. ++.+++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 46789999986 6999999999999997 68888765
No 413
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.10 E-value=1.4 Score=43.70 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=49.5
Q ss_pred CCCCchhhhhHHHHHhhcCCCCCCCCCChHHHHHHhcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 8 SSPGNMARKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 8 ~~~~~~~~r~~~~~~l~~r~~~f~~~~G~e~~~~~L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+++.++..+-.++.-++.+-.+|.. ++.+.. ..+++++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~ 79 (290)
T PRK06701 11 PMPAQHQNKQPGIESLMNPLPQFEA-PNYKGS-GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLD 79 (290)
T ss_pred CCcchhhccCcChhhhCCcccCCCc-cccccc-cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5677777888888888877665553 111211 245788999998 58899999999999996 57777543
No 414
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.08 E-value=4.7 Score=41.66 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=29.3
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++|+|.|+ |-||+++++.|...|. +++.+|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEec
Confidence 4678999996 9999999999999985 68888853
No 415
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.04 E-value=1.1 Score=45.59 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.0
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 379999999999999999999995 688887653
No 416
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=86.02 E-value=5.6 Score=42.22 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=29.4
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+..||+|.| .|-||+++++.|...|. +++.+|..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 577999999 68999999999999986 68888854
No 417
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.95 E-value=2.7 Score=40.86 Aligned_cols=34 Identities=6% Similarity=0.152 Sum_probs=29.1
Q ss_pred hcCCeEEEECC---chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA---GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~---GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+.++.++|.|+ +|||.++++.|+..|. ++.+++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecC
Confidence 46789999998 5999999999999997 6777754
No 418
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=85.87 E-value=0.68 Score=41.66 Aligned_cols=103 Identities=19% Similarity=0.144 Sum_probs=51.4
Q ss_pred eEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCcCCccCCccccCCCCCc-cCchHHHHHHHH-HHhhCCCCeEEEEecc
Q psy7810 47 KVLIIGAGGLGCELLKDIAL-MGFNEIHVIDMDTIDLSNLNRQFLFRQKD-IGSSKAEVAAKF-INSRIPGVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal-~Gvg~i~iiD~D~v~~sNL~rqfl~~~~d-iG~~Ka~aa~~~-l~~~np~v~i~~~~~~ 123 (478)
||.|+|+|.+|..+++.+.. .++.-+.+.| ..++..+.. |+.-+. -|+.+..+..+. -...| +..+.....+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d--~~~~~~~a~--ll~~Ds~hg~~~~~v~~~~~~l~i~-g~~i~~~~~~ 76 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIND--LTDPETLAH--LLKYDSVHGRFPGEVEVDEDGLIVN-GKKIKVLAER 76 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeec--CCCHHHHHH--HhcccCCCCCCCCcEEEeCCEEEEC-CEEEEEEecC
Confidence 79999999999999999874 3554444554 244444433 333222 255543211000 00001 1112111111
Q ss_pred cCCCchhh-hccccEEEeccCcHHHHHHHHHHH
Q psy7810 124 IQDYDSDF-YQQFHIIVCGLDSIVARRWINGML 155 (478)
Q Consensus 124 i~~~~~~~-~~~~DlVi~~~Dn~~~r~~in~~~ 155 (478)
......| -.+.|+||+|+..+.++.......
T Consensus 77 -~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl 108 (149)
T smart00846 77 -DPANLPWKELGVDIVVECTGKFTTREKASAHL 108 (149)
T ss_pred -ChHHCcccccCCeEEEeccccccchHHHHHHH
Confidence 0001111 136799999998877665444433
No 419
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.84 E-value=1.9 Score=41.05 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=30.3
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
|++++|+|.| .||+|.++++.|+..|. ++.+++.+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~ 40 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQ 40 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCh
Confidence 4678999998 58999999999999997 688887543
No 420
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.83 E-value=0.93 Score=46.14 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=28.9
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGF-N-----EIHVIDM 77 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gv-g-----~i~iiD~ 77 (478)
.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 48999999 9999999999999988 4 6999984
No 421
>PRK08589 short chain dehydrogenase; Validated
Probab=85.82 E-value=2 Score=42.11 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.0
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r 38 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDI 38 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999985 8999999999999996 6777764
No 422
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=85.79 E-value=0.88 Score=42.16 Aligned_cols=33 Identities=15% Similarity=0.418 Sum_probs=28.5
Q ss_pred hcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 43 L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD 76 (478)
+++++|+|||.|-.|.+++.+|+..| .+++++=
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEe
Confidence 57899999999999999999999999 8999874
No 423
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.75 E-value=5.4 Score=38.61 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=27.1
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.++|+|.| .||||.++++.|+..|--++.+++.+
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~ 42 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALP 42 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 45788887 78999999999999863478887644
No 424
>CHL00194 ycf39 Ycf39; Provisional
Probab=85.75 E-value=7 Score=39.22 Aligned_cols=31 Identities=26% Similarity=0.595 Sum_probs=26.4
Q ss_pred eEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|+|.|+ |-+|.++++.|...|. +++.++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcC
Confidence 7999995 9999999999999996 57777643
No 425
>PRK06487 glycerate dehydrogenase; Provisional
Probab=85.71 E-value=1.1 Score=45.63 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=62.7
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|.+++|.|||+|.||.++|+-|...|. ++..+|... ..... .
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~------------~~~~~-------------------~----- 187 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG------------RPARP-------------------D----- 187 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------------Ccccc-------------------c-----
Confidence 4699999999999999999999987776 566665320 00000 0
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeee
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTE 181 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~ 181 (478)
. ..-++++++.|+|+.++ -+.+++..+|+.....+ +.+--+|+.+-.
T Consensus 188 -~--~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~m----------k~ga~lIN~aRG 235 (317)
T PRK06487 188 -R--LPLDELLPQVDALTLHCPLTEHTRHLIGARELALM----------KPGALLINTARG 235 (317)
T ss_pred -c--cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcC----------CCCeEEEECCCc
Confidence 0 02457889999999876 57889999998776543 345667777643
No 426
>PLN02858 fructose-bisphosphate aldolase
Probab=85.70 E-value=3.6 Score=49.93 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
...+|.+||+|-.|..+++||+.+|+ .+++.|.+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~-~v~v~dr~ 36 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF-KVQAFEIS 36 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 46789999999999999999999996 68888754
No 427
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=85.69 E-value=1 Score=45.90 Aligned_cols=32 Identities=34% Similarity=0.590 Sum_probs=28.4
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGF-N-----EIHVIDM 77 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gv-g-----~i~iiD~ 77 (478)
.||.|||+ |.+|+.++..|+..|+ + +|.|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 48999998 9999999999999997 4 6888874
No 428
>PRK07060 short chain dehydrogenase; Provisional
Probab=85.63 E-value=1.3 Score=42.17 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=30.3
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.+++++|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~ 42 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN 42 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999997 8999999999999997 68888753
No 429
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=85.63 E-value=1.8 Score=41.90 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=29.5
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|++++|+|.|+ ||||.++++.|+..|. ++.++|..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999985 7999999999999997 68887754
No 430
>PRK13018 cell division protein FtsZ; Provisional
Probab=85.60 E-value=1.6 Score=45.40 Aligned_cols=38 Identities=24% Similarity=0.500 Sum_probs=32.9
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCcCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDTID 81 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg--~i~iiD~D~v~ 81 (478)
.+.+|.|||+||-||-++.+|...|+. .+..++.|.-.
T Consensus 27 ~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~ 66 (378)
T PRK13018 27 GNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQH 66 (378)
T ss_pred CCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHH
Confidence 568999999999999999999999986 56778888843
No 431
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=85.58 E-value=3.5 Score=34.95 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHHHh----CCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCCC
Q psy7810 52 GAGGLGCELLKDIALM----GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDY 127 (478)
Q Consensus 52 G~GglG~eiaknLal~----Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~~ 127 (478)
|+|.+|..+++.|... ++.-..|.|.+. ++... ..... +...+. ..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~----------~~~~~------------~~~~~-~~~~~~-------~~ 50 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSM----------LISKD------------WAASF-PDEAFT-------TD 50 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSE----------EEETT------------HHHHH-THSCEE-------SS
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCc----------hhhhh------------hhhhc-cccccc-------CC
Confidence 8999999999999977 455555556541 00110 11111 111111 12
Q ss_pred chhhhc--cccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeee
Q psy7810 128 DSDFYQ--QFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGT 180 (478)
Q Consensus 128 ~~~~~~--~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~ 180 (478)
.++++. ..|+||+|+....+..++-.+.. +++.+|.+..
T Consensus 51 ~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~--------------~G~~VVt~nk 91 (117)
T PF03447_consen 51 LEELIDDPDIDVVVECTSSEAVAEYYEKALE--------------RGKHVVTANK 91 (117)
T ss_dssp HHHHHTHTT-SEEEE-SSCHHHHHHHHHHHH--------------TTCEEEES-H
T ss_pred HHHHhcCcCCCEEEECCCchHHHHHHHHHHH--------------CCCeEEEECH
Confidence 345555 89999999887777766666653 5777776654
No 432
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=85.55 E-value=3.8 Score=39.65 Aligned_cols=76 Identities=14% Similarity=0.265 Sum_probs=46.0
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchH-HHHHHHHHHhhCCCCeEEEE
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSK-AEVAAKFINSRIPGVKVIPH 120 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~K-a~aa~~~l~~~np~v~i~~~ 120 (478)
|.+++|+|.| .||||.++++.|+..|. ++.++|.+.-.... .++.+-.-|+.... .+.+.+.+.+..+.+.+-.+
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~ 83 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH--ENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN 83 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc--CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4688999998 68999999999999996 67777765432211 12222345665443 23334444444444444444
Q ss_pred e
Q psy7810 121 F 121 (478)
Q Consensus 121 ~ 121 (478)
.
T Consensus 84 ~ 84 (266)
T PRK06171 84 N 84 (266)
T ss_pred C
Confidence 3
No 433
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=85.51 E-value=3.2 Score=39.73 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=30.8
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
|.+++|+|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 46789999995 6899999999999996 688888765
No 434
>PRK09135 pteridine reductase; Provisional
Probab=85.51 E-value=4.6 Score=38.29 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.2
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+++|+|.| .|++|..+++.|+..|. ++.+++..
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~ 39 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHR 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence 457899998 59999999999999997 57776643
No 435
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.50 E-value=1.1 Score=45.23 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=29.4
Q ss_pred eEEEECC-chHHHHHHHHHHHhCC-CeEEEEeCC
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGF-NEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gv-g~i~iiD~D 78 (478)
||.|||+ |.+|+.+|..|+..|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 8999999 9999999999999997 579999965
No 436
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=85.47 E-value=4.2 Score=39.32 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=26.5
Q ss_pred eEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~ 33 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRN 33 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 789998 58999999999999997 68887643
No 437
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=85.42 E-value=4.5 Score=40.71 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=28.9
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++++|+|.|+ +|||.++++.|+..|..++.+++.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678999986 6899999999999995578877654
No 438
>PRK06270 homoserine dehydrogenase; Provisional
Probab=85.40 E-value=5.1 Score=41.07 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred CeEEEECCchHHHHHHHHHHHh
Q psy7810 46 CKVLIIGAGGLGCELLKDIALM 67 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~ 67 (478)
-+|.|+|+|.+|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999999765
No 439
>PLN00016 RNA-binding protein; Provisional
Probab=85.33 E-value=4.3 Score=41.94 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=30.0
Q ss_pred cCCeEEEE----CC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLII----GA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~Vlvv----G~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+..+|+|+ |+ |-+|.++++.|+..|. ++++++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCC
Confidence 56789999 75 8899999999999995 788888654
No 440
>PRK06128 oxidoreductase; Provisional
Probab=85.28 E-value=2.4 Score=42.23 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=27.8
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD 76 (478)
|++++|+|.| .||||.++++.|+..|. ++.+.+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~ 86 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNY 86 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence 5788999998 58999999999999997 565554
No 441
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=85.26 E-value=5.5 Score=42.87 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=30.9
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
...+|+|||+|..|.+.|..|++.|. +++|+|...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 35799999999999999999999997 699998654
No 442
>PLN02740 Alcohol dehydrogenase-like
Probab=85.23 E-value=6.1 Score=40.82 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.+.+|+|+|+|++|..++..+...|+.++..+|.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 46799999999999999999889998888888653
No 443
>PRK06179 short chain dehydrogenase; Provisional
Probab=85.22 E-value=3.5 Score=40.02 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=29.7
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
++++|+|.| .||||.++++.|+..|. ++++++.+.-
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~ 39 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPA 39 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChh
Confidence 356799998 68999999999999996 5888887643
No 444
>PRK12937 short chain dehydrogenase; Provisional
Probab=85.15 E-value=2.5 Score=40.13 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=27.3
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD 76 (478)
+.+++|+|.| .||||.++++.|+..|. ++.++.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~ 36 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNY 36 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence 3678999998 59999999999999997 455543
No 445
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=85.11 E-value=9.3 Score=32.54 Aligned_cols=24 Identities=50% Similarity=0.688 Sum_probs=19.8
Q ss_pred eEEEECC-chHHHHHHHHHHHh-CCC
Q psy7810 47 KVLIIGA-GGLGCELLKDIALM-GFN 70 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~-Gvg 70 (478)
||.|+|+ |-+|..+++.|... ++.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~ 26 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFE 26 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCce
Confidence 6899996 67888999999986 664
No 446
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=85.10 E-value=2.5 Score=44.87 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=48.1
Q ss_pred cCCeEEEECC-chHHHHHHHHHHHh-------CC-CeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhC-C
Q psy7810 44 TSCKVLIIGA-GGLGCELLKDIALM-------GF-NEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRI-P 113 (478)
Q Consensus 44 ~~~~VlvvG~-GglG~eiaknLal~-------Gv-g~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~n-p 113 (478)
+-.||.|||+ |.+|+.+|-.|+.. |+ .+|.++|. .+.|++.-+--|+... |
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~-------------------~~~~a~G~amDL~daa~~ 159 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER-------------------SKQALEGVAMELEDSLYP 159 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcC-------------------CcchhHHHHHHHHHhhhh
Confidence 3469999999 99999999999988 44 24655552 2234444444444433 3
Q ss_pred CC-eEEEEecccCCCchhhhccccEEEeccCc
Q psy7810 114 GV-KVIPHFCKIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 114 ~v-~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
.. +|.... .+.+-++++|+||.+-..
T Consensus 160 ~~~~v~i~~-----~~ye~~kdaDiVVitAG~ 186 (444)
T PLN00112 160 LLREVSIGI-----DPYEVFQDAEWALLIGAK 186 (444)
T ss_pred hcCceEEec-----CCHHHhCcCCEEEECCCC
Confidence 22 222222 234558899999987544
No 447
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=85.07 E-value=3.7 Score=41.77 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.0
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999985 889999999999999776767664
No 448
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.06 E-value=1.1 Score=50.13 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=30.5
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..|+|||+|-.|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 699999874
No 449
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=84.79 E-value=1.3 Score=48.52 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=32.1
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID 81 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~ 81 (478)
...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 4689999999999999999999997 79999986553
No 450
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=84.78 E-value=5.1 Score=38.29 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=26.8
Q ss_pred CeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 46 CKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++++|.| .|+||.++++.|+..|. ++.+++.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~ 33 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLN 33 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3688998 68999999999999997 67777643
No 451
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=84.72 E-value=5.5 Score=36.63 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=39.5
Q ss_pred eEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.++|+| .||||.++++.|+..|..+|.++-... .+..+.....+.+++. .++|..+..+
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~~~~~~~~~i~~l~~~--g~~v~~~~~D 61 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------APSAEAEAAIRELESA--GARVEYVQCD 61 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------GGSTTHHHHHHHHHHT--T-EEEEEE--
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------CccHHHHHHHHHHHhC--CCceeeeccC
Confidence 578886 999999999999999999998864332 3334445556666664 4566665543
No 452
>PRK06720 hypothetical protein; Provisional
Probab=84.70 E-value=3.1 Score=38.11 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=29.9
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
++++.++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 57889999996 4799999999999994 78888865
No 453
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=84.60 E-value=4.9 Score=38.81 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred eEEEEC-CchHHHHHHHHHHH----hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 47 KVLIIG-AGGLGCELLKDIAL----MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal----~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|+|.| .+|||.++++.|+. .|. ++.+++.+. .+.+.+++.++...|..++..+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~v~~~~ 61 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARND-------------------EALRQLKAEIGAERSGLRVVRVS 61 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcCH-------------------HHHHHHHHHHHhcCCCceEEEEE
Confidence 577887 57999999999997 574 677766431 24455555565544455555444
Q ss_pred ccc
Q psy7810 122 CKI 124 (478)
Q Consensus 122 ~~i 124 (478)
.++
T Consensus 62 ~Dl 64 (256)
T TIGR01500 62 LDL 64 (256)
T ss_pred ecc
Confidence 443
No 454
>PLN02256 arogenate dehydrogenase
Probab=84.55 E-value=1.5 Score=44.31 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=29.1
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
+..+|.|||+|.+|..+++.|...|. .++++|.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 56799999999999999999999885 6888774
No 455
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=84.55 E-value=2.2 Score=32.44 Aligned_cols=59 Identities=14% Similarity=0.354 Sum_probs=41.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHhcCCCCCccCCcceEeecCCccEEEecCccchhHHhhhccccccccccccCCcEEEEe
Q psy7810 381 PKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVELGLRDEGIVNVA 458 (478)
Q Consensus 381 ~~~~~~~~~~~Tl~~li~~l~~~~~~~~~~~~i~~~~~~~~~~ly~~~~~~~~~~~~~nl~k~l~~l~~~~g~~l~v~ 458 (478)
...+.++++. |+.+|-+.+.. ..++....+.+...| +.| .-+++|.++|+++|+.|.+.
T Consensus 7 ~~~~~v~~~~-tV~~lK~~i~~--~~~~~~~~~~L~~~G--~~L--------------~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 7 TFTLEVDPDD-TVADLKQKIAE--ETGIPPEQQRLIYNG--KEL--------------DDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEEEETTS-BHHHHHHHHHH--HHTSTGGGEEEEETT--EEE--------------STTSBTGGGTTSTTEEEEEE
T ss_pred EEEEEECCCC-CHHHhhhhccc--ccccccccceeeeee--ecc--------------cCcCcHHHcCCCCCCEEEEE
Confidence 3567788777 99999999987 667665555443222 222 11589999999999977653
No 456
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.48 E-value=1.3 Score=41.76 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=30.6
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~ 41 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGA 41 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCCh
Confidence 46789999985 9999999999999997 488887653
No 457
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=84.47 E-value=1.6 Score=43.97 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=32.4
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCcCCccCC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDTIDLSNL 85 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg--~i~iiD~D~v~~sNL 85 (478)
.+|.|||+||-||-++..|.+.|+. .+..+|.|.-.+..+
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~ 42 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKS 42 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcC
Confidence 3799999999999999999999986 456678877544443
No 458
>PRK05442 malate dehydrogenase; Provisional
Probab=84.45 E-value=1.3 Score=45.15 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=29.1
Q ss_pred CCeEEEECC-chHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy7810 45 SCKVLIIGA-GGLGCELLKDIALMGF-N-----EIHVIDM 77 (478)
Q Consensus 45 ~~~VlvvG~-GglG~eiaknLal~Gv-g-----~i~iiD~ 77 (478)
-.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 359999998 9999999999999887 5 6999984
No 459
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=84.38 E-value=2.4 Score=43.81 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=64.1
Q ss_pred CeEEEECC-chHHHHHHHHHH-HhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 46 CKVLIIGA-GGLGCELLKDIA-LMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLa-l~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
.+|.|||+ |.+|.++++.|. ...|--.+++ +|.....|..+. .. .+..+ .
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~--------------~~ss~~s~g~~~--------~f-~~~~~-----~ 52 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPV--------------FFSTSQLGQAAP--------SF-GGTTG-----T 52 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEE--------------EEEchhhCCCcC--------CC-CCCcc-----e
Confidence 37999997 889999999888 6666322221 223222222110 00 01111 1
Q ss_pred cCCCch-hhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCce--eEEE-eeeeceeceEEEEcCCCC
Q psy7810 124 IQDYDS-DFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTII--PMVD-GGTEGFKGNARVILPGMT 195 (478)
Q Consensus 124 i~~~~~-~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~i--p~i~-~g~~G~~G~v~~~~p~~t 195 (478)
+.+... +-|+++|+|+.|.++.-++.+.-.+. ++|. .+|+ ++..-+.-.+.+++|...
T Consensus 53 v~~~~~~~~~~~vDivffa~g~~~s~~~~p~~~--------------~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN 114 (366)
T TIGR01745 53 LQDAFDIDALKALDIIITCQGGDYTNEIYPKLR--------------ESGWQGYWIDAASSLRMKDDAVIILDPVN 114 (366)
T ss_pred EEcCcccccccCCCEEEEcCCHHHHHHHHHHHH--------------hCCCCeEEEECChhhhcCCCCCEEeCCcC
Confidence 111111 24689999999999887777777666 3563 4676 445566777778877654
No 460
>PTZ00188 adrenodoxin reductase; Provisional
Probab=84.38 E-value=8.5 Score=41.51 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=56.0
Q ss_pred cCCeEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHh--hCCCCeEEEE
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIA-LMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINS--RIPGVKVIPH 120 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLa-l~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~--~np~v~i~~~ 120 (478)
+..||+|||+|.-|.+.|+.|+ ..|. +++|+|....-- -|-|.- ..+.+. +.....+.+.+ .++.+++..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~G-VaPdh~---~~k~v~~~f~~~~~~~~v~f~g- 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYG-VAPDHI---HVKNTYKTFDPVFLSPNYRFFG- 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEe-CCCCCc---cHHHHHHHHHHHHhhCCeEEEe-
Confidence 4679999999999999999765 5675 699998665432 333321 223332 22222233222 235555442
Q ss_pred ecccC-CC-chhhhccccEEEeccCcH
Q psy7810 121 FCKIQ-DY-DSDFYQQFHIIVCGLDSI 145 (478)
Q Consensus 121 ~~~i~-~~-~~~~~~~~DlVi~~~Dn~ 145 (478)
+..+. +. .+++.+.||.||.|+...
T Consensus 111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 22222 22 255667999999998753
No 461
>PRK12831 putative oxidoreductase; Provisional
Probab=84.36 E-value=5.4 Score=42.70 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.7
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
...+|+|||+|..|...|..|++.|. +++|+|..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 57899999999999999999999997 68999853
No 462
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=84.32 E-value=1.5 Score=45.78 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=29.8
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+|+|||+|-+|+.+|..|+..|. +|+|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 79999999999999999999996 799999874
No 463
>PRK08628 short chain dehydrogenase; Provisional
Probab=84.31 E-value=3.2 Score=39.96 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=29.0
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~ 40 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRS 40 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCC
Confidence 5788999998 57999999999999997 46666543
No 464
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=84.31 E-value=1.4 Score=47.68 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=29.8
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+|.|||+|-+|+.+|.+|+.+|+ .+++.|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 799998743
No 465
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=84.24 E-value=1.2 Score=45.34 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=28.1
Q ss_pred eEEEECC-chHHHHHHHHHHHhCCC------eEEEEeC
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGFN------EIHVIDM 77 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gvg------~i~iiD~ 77 (478)
||.|||+ |.+|+.++..|+..|+- .|.|+|.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6999999 99999999999998885 5999985
No 466
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.24 E-value=0.58 Score=53.04 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.8
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++|.|||+|-.|+.||..++.+|+ .++++|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 579999999999999999999997 699998654
No 467
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=84.18 E-value=1.6 Score=44.55 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=30.0
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|.|+ |.||+++++.|+..|. +++++|.+.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 38 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDP 38 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCC
Confidence 36789999995 8899999999999995 677777553
No 468
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=84.16 E-value=2.4 Score=40.68 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.8
Q ss_pred eEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|+|+| .||+|.++++.|+..|. ++.+++.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~ 33 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRR 33 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 689998 58999999999999997 68888754
No 469
>PRK09126 hypothetical protein; Provisional
Probab=84.10 E-value=1.3 Score=45.82 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=31.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
++..|+|||+|..|+.+|..|++.|+ +++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence 46789999999999999999999998 5899987654
No 470
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.08 E-value=1.5 Score=43.27 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=26.8
Q ss_pred eEEEECCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFN-EIHVIDM 77 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg-~i~iiD~ 77 (478)
+|.|||+|.+|..++..|...|.. .++.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 799999999999999999999973 5776654
No 471
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.06 E-value=1.5 Score=40.91 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=48.5
Q ss_pred CeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccC
Q psy7810 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQ 125 (478)
Q Consensus 46 ~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~ 125 (478)
.||.|+|+|=+|..+|-.|+..|+ ++.-+|.|.-....+++-.+.- .+-|.. +.+++.++ .-++....
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~-~E~~l~--~ll~~~~~----~~~l~~t~---- 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPI-YEPGLD--ELLKENVS----AGRLRATT---- 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS--CTTHH--HHHHHHHH----TTSEEEES----
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccc-cccchh--hhhccccc----cccchhhh----
Confidence 389999999999999999999996 7999999887777777664422 233321 22222222 22333221
Q ss_pred CCchhhhccccEEEeccC
Q psy7810 126 DYDSDFYQQFHIIVCGLD 143 (478)
Q Consensus 126 ~~~~~~~~~~DlVi~~~D 143 (478)
...+-++++|+++.|+.
T Consensus 69 -~~~~ai~~adv~~I~Vp 85 (185)
T PF03721_consen 69 -DIEEAIKDADVVFICVP 85 (185)
T ss_dssp -EHHHHHHH-SEEEE---
T ss_pred -hhhhhhhccceEEEecC
Confidence 12334778999999864
No 472
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.02 E-value=3 Score=40.72 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=28.7
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
++++|+|.| .|++|..+++.|+..|. ++.+++.+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~ 37 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNP 37 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCH
Confidence 456789998 58999999999999996 577777553
No 473
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=84.01 E-value=3.5 Score=41.86 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.1
Q ss_pred eEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q psy7810 47 KVLIIGA-GGLGCELLKDIALMGFNEIHVID 76 (478)
Q Consensus 47 ~VlvvG~-GglG~eiaknLal~Gvg~i~iiD 76 (478)
||+|.|+ |.||+++++.|...|...+..+|
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 7999985 99999999999999875555555
No 474
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.99 E-value=3.5 Score=38.95 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.3
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEE
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHV 74 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~i 74 (478)
..++|+|+| .|++|.++++.|+..|.. +++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~ 35 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGAD-VVV 35 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence 467999998 699999999999999984 444
No 475
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=83.96 E-value=2 Score=41.68 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=30.3
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+++++|+|.|+ ||||.++++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 40 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSA 40 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 46789999985 7999999999999997 588887653
No 476
>PRK07791 short chain dehydrogenase; Provisional
Probab=83.95 E-value=3.6 Score=40.73 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.3
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+.++.++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~ 39 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG 39 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCC
Confidence 5778899998 67999999999999997 57777643
No 477
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=83.89 E-value=6.9 Score=41.62 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCK 123 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~ 123 (478)
...+|+|||+|..|.+.|..|++.|. +++|+|... .+.-+..+.-.....++..+....-.-...++++.....-
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~----~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD----KAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC----CCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Q ss_pred cCCCc-hhhhccccEEEeccCc
Q psy7810 124 IQDYD-SDFYQQFHIIVCGLDS 144 (478)
Q Consensus 124 i~~~~-~~~~~~~DlVi~~~Dn 144 (478)
-.... .+....||.||.|+..
T Consensus 214 ~~~v~~~~~~~~~d~vvlAtGa 235 (457)
T PRK11749 214 GRDITLDELRAGYDAVFIGTGA 235 (457)
T ss_pred CCccCHHHHHhhCCEEEEccCC
No 478
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=83.87 E-value=1.6 Score=36.01 Aligned_cols=82 Identities=22% Similarity=0.424 Sum_probs=50.7
Q ss_pred cCCeEEEECCchHHHHHHHH-HHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKD-IALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiakn-Lal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
+..+|+|+|+|++|..++.+ ....|++-..++|.|. ..+++... .+ ..+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~---~~~G~~i~-----------------------gi--pV~~- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP---EKIGKEIG-----------------------GI--PVYG- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT---TTTTSEET-----------------------TE--EEES-
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC---CccCcEEC-----------------------CE--Eeec-
Confidence 36799999999999988754 4466888889988543 22222211 22 2221
Q ss_pred ccCCCchhhhccccEEEeccCcHHHHHHHHHHHH
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~ 156 (478)
.+.+ ..++. +.|+.|.++....++..+.+++.
T Consensus 53 ~~~~-l~~~~-~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 53 SMDE-LEEFI-EIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp SHHH-HHHHC-TTSEEEEES-HHHHHHHHHHHHH
T ss_pred cHHH-hhhhh-CCCEEEEEcCHHHHHHHHHHHHH
Confidence 1111 12223 38999999987778777777764
No 479
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=83.79 E-value=1.5 Score=45.22 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=31.5
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcC
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v 80 (478)
...|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 4589999999999999999999998 7999997754
No 480
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.75 E-value=1.5 Score=47.45 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=30.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.-++|.|||+|..|+.||.+|+.+|+ .++++|.+.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~ 38 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRA 38 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 34689999999999999999999997 688988553
No 481
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=83.75 E-value=6.2 Score=40.29 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=29.6
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~ 77 (478)
.+.+|+|.|+|++|..++...-..|+.++..+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4679999999999999998888889887888764
No 482
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=83.72 E-value=5.7 Score=39.77 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=26.0
Q ss_pred cCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEE
Q psy7810 44 TSCKVLIIG-AGGLGCELLKDIALMGFNEIHVI 75 (478)
Q Consensus 44 ~~~~VlvvG-~GglG~eiaknLal~Gvg~i~ii 75 (478)
.+++|+|.| .|.||+++++.|+..|. +++++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~ 35 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKAT 35 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEE
Confidence 467999998 69999999999999997 45543
No 483
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=83.67 E-value=2.6 Score=40.48 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=29.1
Q ss_pred hcCCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~ 42 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDIT 42 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCC
Confidence 4678999998 58999999999999996 67776643
No 484
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.65 E-value=1.5 Score=44.64 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=29.2
Q ss_pred CeEEEECC-chHHHHHHHHHHHhCCC------eEEEEeCC
Q psy7810 46 CKVLIIGA-GGLGCELLKDIALMGFN------EIHVIDMD 78 (478)
Q Consensus 46 ~~VlvvG~-GglG~eiaknLal~Gvg------~i~iiD~D 78 (478)
.||+|+|+ |.+|+.++..|+..|+- +|.++|..
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~ 42 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP 42 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence 47999999 99999999999998874 79999864
No 485
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=83.64 E-value=9.1 Score=36.35 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=44.8
Q ss_pred EEEECC-chHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEecccCC
Q psy7810 48 VLIIGA-GGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQD 126 (478)
Q Consensus 48 VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~~i~~ 126 (478)
|+|+|+ |.+|..++..|...|+. ++++= |.. .....+.++.. .+++. ..+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~---------------R~~------~~~~~~~l~~~--g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALV---------------RDP------SSDRAQQLQAL--GAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEE---------------SSS------HHHHHHHHHHT--TTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEE---------------ecc------chhhhhhhhcc--cceEe--ecccCC
Confidence 799996 99999999999997764 55532 211 22223344443 55543 444433
Q ss_pred C--chhhhccccEEEeccC
Q psy7810 127 Y--DSDFYQQFHIIVCGLD 143 (478)
Q Consensus 127 ~--~~~~~~~~DlVi~~~D 143 (478)
. -.+.|++.|.|+.++.
T Consensus 55 ~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp HHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHcCCceEEeecC
Confidence 2 2567899999999887
No 486
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=83.63 E-value=6.3 Score=46.22 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=31.3
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..++|+|||+|.-|-..|..|++.|. +++|+|...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 45799999999999999999999997 699998654
No 487
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=83.59 E-value=1.6 Score=44.57 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.8
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID 81 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~ 81 (478)
.|+|||+|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 69999999999999999999996 69999988763
No 488
>KOG1371|consensus
Probab=83.58 E-value=2.8 Score=42.30 Aligned_cols=75 Identities=23% Similarity=0.441 Sum_probs=51.2
Q ss_pred CCeEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCC-CCeEEEEec
Q psy7810 45 SCKVLIIG-AGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIP-GVKVIPHFC 122 (478)
Q Consensus 45 ~~~VlvvG-~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np-~v~i~~~~~ 122 (478)
..+|||.| +|=+|++.+-.|...|.+ +.++| ||+|-++ .+.++++++.+ .-.|..+..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vD-------Nl~n~~~------------~sl~r~~~l~~~~~~v~f~~~ 61 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVD-------NLNNSYL------------ESLKRVRQLLGEGKSVFFVEG 61 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCc-EEEEe-------cccccch------------hHHHHHHHhcCCCCceEEEEe
Confidence 46899996 899999999999999985 66666 7777653 34455555543 346677777
Q ss_pred ccCCCc--hhhhc--cccEEE
Q psy7810 123 KIQDYD--SDFYQ--QFHIIV 139 (478)
Q Consensus 123 ~i~~~~--~~~~~--~~DlVi 139 (478)
++.+.. ...|+ .||-|+
T Consensus 62 Dl~D~~~L~kvF~~~~fd~V~ 82 (343)
T KOG1371|consen 62 DLNDAEALEKLFSEVKFDAVM 82 (343)
T ss_pred ccCCHHHHHHHHhhcCCceEE
Confidence 776543 34443 456555
No 489
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=83.44 E-value=1.6 Score=44.25 Aligned_cols=93 Identities=18% Similarity=0.112 Sum_probs=62.6
Q ss_pred HhcCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 42 ~L~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
.|.+++|.|||+|.||.++|+.+...|. +|..+|.-.. ..+. .+. +
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~------------~~~~-----------------~~~---~- 187 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGK------------NKNE-----------------EYE---R- 187 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCcc------------cccc-----------------Cce---e-
Confidence 4699999999999999999999976665 5766665210 0000 010 0
Q ss_pred cccCCCchhhhccccEEEecc-CcHHHHHHHHHHHHHhhhccccCcccCCCceeEEEeeeec
Q psy7810 122 CKIQDYDSDFYQQFHIIVCGL-DSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEG 182 (478)
Q Consensus 122 ~~i~~~~~~~~~~~DlVi~~~-Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~~g~~G 182 (478)
..-++++++.|+|+.++ -+.+++..+|+.....+ +.+.-+|+.+-.+
T Consensus 188 ----~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M----------k~~a~lIN~aRG~ 235 (311)
T PRK08410 188 ----VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL----------KDGAILINVGRGG 235 (311)
T ss_pred ----ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC----------CCCeEEEECCCcc
Confidence 12356788999998876 46788888988776443 3456677766443
No 490
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.40 E-value=1.9 Score=40.90 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.4
Q ss_pred hcCCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~ 38 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRN 38 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999995 7899999999999998 67777653
No 491
>PRK06185 hypothetical protein; Provisional
Probab=83.36 E-value=1.5 Score=45.64 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.5
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 46789999999999999999999998 699999764
No 492
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.36 E-value=3.4 Score=40.42 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=29.7
Q ss_pred hcCCeEEEECCc---hHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 43 QTSCKVLIIGAG---GLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 43 L~~~~VlvvG~G---glG~eiaknLal~Gvg~i~iiD~D 78 (478)
++++.++|.|++ |||.++++.|+..|. ++.++|.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecc
Confidence 467899999986 899999999999997 57777653
No 493
>PRK07236 hypothetical protein; Provisional
Probab=83.26 E-value=1.6 Score=45.26 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=31.4
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
+..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 56799999999999999999999998 589998654
No 494
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.25 E-value=4.1 Score=40.59 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=28.0
Q ss_pred CCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 45 ~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
..+|+|+|+|.+|..++..|...|.. ..+++.|.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d~ 36 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGRDR 36 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCe-EEEEeecC
Confidence 56899999999999999999999974 55555443
No 495
>PRK08017 oxidoreductase; Provisional
Probab=83.22 E-value=2 Score=41.24 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.9
Q ss_pred CCeEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 45 SCKVLIIGA-GGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 45 ~~~VlvvG~-GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
.++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~ 35 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGY-RVLAACRK 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357999998 9999999999999997 67777654
No 496
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=83.21 E-value=7.3 Score=45.92 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=55.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcCCccCCccccCC--CCCccCchHHHHHHHHHHhhCCCCeEEEEe
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLF--RQKDIGSSKAEVAAKFINSRIPGVKVIPHF 121 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~v~~sNL~rqfl~--~~~diG~~Ka~aa~~~l~~~np~v~i~~~~ 121 (478)
..++|+|||+|..|...|..|++.|. +++|+|... .++.+.-+ .....++.-.....+.+.++ ++++....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~----~~GG~l~~gip~~rl~~e~~~~~~~~l~~~--Gv~~~~~~ 501 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALH----VVGGVLQYGIPSFRLPRDIIDREVQRLVDI--GVKIETNK 501 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC----CCcceeeccCCccCCCHHHHHHHHHHHHHC--CCEEEeCC
Confidence 46799999999999999999999997 799998653 22222111 11112222233344445554 45554331
Q ss_pred cccC-CCc-hhhh--ccccEEEeccCc
Q psy7810 122 CKIQ-DYD-SDFY--QQFHIIVCGLDS 144 (478)
Q Consensus 122 ~~i~-~~~-~~~~--~~~DlVi~~~Dn 144 (478)
.+. +.. .++. .+||-||.|+..
T Consensus 502 -~vg~~~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 502 -VIGKTFTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred -ccCCccCHHHHhhccCCCEEEEecCC
Confidence 121 222 2333 369999998875
No 497
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=83.16 E-value=1.5 Score=45.88 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=28.6
Q ss_pred eEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy7810 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78 (478)
Q Consensus 47 ~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D 78 (478)
+|+|||+|..|+..|..|++.|+ ++.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEEecC
Confidence 79999999999999999999998 58999864
No 498
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.16 E-value=6.1 Score=40.21 Aligned_cols=75 Identities=23% Similarity=0.154 Sum_probs=51.8
Q ss_pred cCCeEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIAL-MGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal-~Gvg~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
...++.|||+|..|-..++.|.. ..+.++.+.|. ...|++..++.+++.. +++.+.
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r-------------------~~~~~~~~~~~~~~~g--~~v~~~-- 183 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR-------------------TPSTREKFALRASDYE--VPVRAA-- 183 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhhC--CcEEEe--
Confidence 45789999999999998877754 24566666553 3457777777777542 333332
Q ss_pred ccCCCchhhhccccEEEeccCc
Q psy7810 123 KIQDYDSDFYQQFHIIVCGLDS 144 (478)
Q Consensus 123 ~i~~~~~~~~~~~DlVi~~~Dn 144 (478)
+...+.+++.|+|+.|+.+
T Consensus 184 ---~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 184 ---TDPREAVEGCDILVTTTPS 202 (325)
T ss_pred ---CCHHHHhccCCEEEEecCC
Confidence 2345677899999999865
No 499
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=83.03 E-value=6.7 Score=39.93 Aligned_cols=108 Identities=16% Similarity=0.252 Sum_probs=71.7
Q ss_pred CeEEEEC-CchHHHHHHHHHHHhCCC--eEEEEeCCcCCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCeEEEEec
Q psy7810 46 CKVLIIG-AGGLGCELLKDIALMGFN--EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFC 122 (478)
Q Consensus 46 ~~VlvvG-~GglG~eiaknLal~Gvg--~i~iiD~D~v~~sNL~rqfl~~~~diG~~Ka~aa~~~l~~~np~v~i~~~~~ 122 (478)
.+|.|+| -|.+|.++++.|....+- .+.+ +++....|+.=.+...+. .
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~---------------~AS~rSaG~~~~~f~~~~--------------~ 52 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVL---------------LASARSAGKKYIEFGGKS--------------I 52 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEE---------------EecccccCCccccccCcc--------------c
Confidence 4899998 577999999999986552 2333 556667776311111110 1
Q ss_pred ccCC--CchhhhccccEEEeccCcHHHHHHHHHHHHHhhhccccCcccCCCceeEEE-eeeeceeceEEEEcCCCCc
Q psy7810 123 KIQD--YDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVD-GGTEGFKGNARVILPGMTA 196 (478)
Q Consensus 123 ~i~~--~~~~~~~~~DlVi~~~Dn~~~r~~in~~~~~l~~~~~~~~~~~~~~ip~i~-~g~~G~~G~v~~~~p~~t~ 196 (478)
.+.+ .+..-+++.|+|+.|.....++.+.-+++ +.|.++|+ ++.+-+.-.+.+++|...+
T Consensus 53 ~v~~~~~~~~~~~~~Divf~~ag~~~s~~~~p~~~--------------~~G~~VIdnsSa~Rm~~DVPLVVPeVN~ 115 (334)
T COG0136 53 GVPEDAADEFVFSDVDIVFFAAGGSVSKEVEPKAA--------------EAGCVVIDNSSAFRMDPDVPLVVPEVNP 115 (334)
T ss_pred cCccccccccccccCCEEEEeCchHHHHHHHHHHH--------------HcCCEEEeCCcccccCCCCCEecCCcCH
Confidence 1122 22333669999999998777777777766 46889998 5567777888888887643
No 500
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=82.91 E-value=21 Score=34.73 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=27.2
Q ss_pred cCCeEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy7810 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79 (478)
Q Consensus 44 ~~~~VlvvG~GglG~eiaknLal~Gvg~i~iiD~D~ 79 (478)
.+.+|+-+|||. |. ++..+++.|.++++-+|.|.
T Consensus 119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~ 152 (250)
T PRK00517 119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDP 152 (250)
T ss_pred CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCH
Confidence 688999999997 74 44567778888899999764
Done!