RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7810
(478 letters)
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 576 bits (1487), Expect = 0.0
Identities = 281/468 (60%), Positives = 338/468 (72%), Gaps = 42/468 (8%)
Query: 12 NMARKWNHLRKVLERPGPFC---TSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMG 68
+ +WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL G
Sbjct: 375 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSG 434
Query: 69 FNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYD 128
F +IHVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++
Sbjct: 435 FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFN 494
Query: 129 SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNAR 188
FY+QFHIIVCGLDSI+ARRWINGML+SLL Y EDG +D S+I+P++DGGTEGFKGNAR
Sbjct: 495 DTFYRQFHIIVCGLDSIIARRWINGMLISLLNY-EDGVLDPSSIVPLIDGGTEGFKGNAR 553
Query: 189 VILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEH 248
VILPGMTACI+CTL+L+PPQV +P+CTIAS
Sbjct: 554 VILPGMTACIECTLELYPPQVNFPMCTIASM----------------------------- 584
Query: 249 CDLPPRLPEHCIEYVKVIQWSKENPF--DCPIDGDDPNHINWIYEKASERASQFNIVGVT 306
PRLPEHCIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVT
Sbjct: 585 ----PRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVT 640
Query: 307 YRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEA 366
YRL QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EA
Sbjct: 641 YRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEA 700
Query: 367 ERKSNCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYM 426
ERK NC AC Q KL E+++ L S QMKSP +T +G+NRTLY+
Sbjct: 701 ERKENCPACSQLPQNIQFS---PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYL 757
Query: 427 STVRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
+V SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 758 QSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 805
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 522 bits (1345), Expect = 0.0
Identities = 281/464 (60%), Positives = 337/464 (72%), Gaps = 42/464 (9%)
Query: 16 KWNHLRKVLERPGPFCTS---PSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEI 72
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF +I
Sbjct: 8 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 67
Query: 73 HVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFY 132
HVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++ FY
Sbjct: 68 HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 127
Query: 133 QQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILP 192
+QFHIIVCGLDSI+ARRWINGML+SLL YE DG +D S+I+P++DGGTEGFKGNARVILP
Sbjct: 128 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 186
Query: 193 GMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLP 252
GMTACI+CTL+L+PPQV +P+CTIAS PRLPEHCIEYV++
Sbjct: 187 GMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRM-------------------- 226
Query: 253 PRLPEHCIEYVKVIQWSKENPF--DCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLV 310
+QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYRL
Sbjct: 227 -------------LQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLT 273
Query: 311 QGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKS 370
QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAERK
Sbjct: 274 QGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKE 333
Query: 371 NCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVR 430
NC AC Q KL E+++ L S QMKSP +T +G+NRTLY+ +V
Sbjct: 334 NCPACSQLPQNIQFS---PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 390
Query: 431 SIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
SIEE TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 391 SIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 434
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 285 bits (730), Expect = 1e-89
Identities = 85/267 (31%), Positives = 131/267 (49%), Gaps = 47/267 (17%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+VL++GAGG+GCELLK++ L GF+ I +ID+DTID+SNLNRQFLF++K +G SKA+VA
Sbjct: 17 GGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVA 76
Query: 105 AKFINSRIPGVKVIPHFCKIQ--DYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYE 162
+ + P ++ + I DY+ +F++QF +++ LD+ AR +N M L+
Sbjct: 77 KESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAAD--- 133
Query: 163 EDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRL 222
+P+++ GT G+ G I G+T C +C P Q T+P TI +TP
Sbjct: 134 ----------VPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGATIRNTPSE 181
Query: 223 PEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDD 282
P HCI + K + ++ + + D D
Sbjct: 182 PIHCIVWAKYLFN----------------------------QLFGEEDADQ-EVSPDRAD 212
Query: 283 PNHINWIYEKASERASQFNIVGVTYRL 309
P W +A RA N G R+
Sbjct: 213 P-EAAWEPTEAEARARASNEDGDIKRI 238
Score = 176 bits (448), Expect = 6e-49
Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 10/229 (4%)
Query: 253 PRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQG 312
RL IE ++V K + + D DDP+ ++++ A+ R F++ + ++
Sbjct: 319 ARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKS 378
Query: 313 VIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNN---YMVFNDVAGIYTYTYEAERK 369
+ NIIPA+A+TNAVIA E K+ +G N +
Sbjct: 379 MAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPN 438
Query: 370 SNCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTV 429
NC C + + + + + L + + + + M +P + ++DG+ L
Sbjct: 439 PNCYVCASKPEVT-VRLNVHKVTVLTLQDKIVK-EKFAMVAPDV-QIEDGKGTILI---- 491
Query: 430 RSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTAKMAE 478
S E T N + L E G+R+ + D TL I + + + +
Sbjct: 492 SSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGK 540
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 198 bits (505), Expect = 1e-55
Identities = 68/271 (25%), Positives = 122/271 (45%), Gaps = 58/271 (21%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFN-----EIHVIDMDTIDLSNLNRQFLFRQKDIGSS 99
+ KV ++G+G +GCE+LK+ AL+G I V D D+I+ SNLNRQFLFR KD+G +
Sbjct: 425 NSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKN 484
Query: 100 KAEVAAKFINSRIPGVKV--IPHFCKIQD-----YDSDFYQQFHIIVCGLDSIVARRWIN 152
K+EVAA+ + + P +K K+ ++ F++ + LD++ AR +++
Sbjct: 485 KSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVD 544
Query: 153 GMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYP 212
+ + P+++ GT G KGN +VI+P +T + D PP+ + P
Sbjct: 545 RRCVFYRK-------------PLLESGTLGTKGNTQVIIPRLTESYSSSRD--PPEKSIP 589
Query: 213 LCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKEN 272
LCT+ S P +H I + K + + ++
Sbjct: 590 LCTLRSFPNKIDHTIAWAKSLFQ-------------------------------GYFTDS 618
Query: 273 PFDCPIDGDDPNHINWIYEKASERASQFNIV 303
+ + PN + +++ + +
Sbjct: 619 AENVNMYLTQPNFVEQTLKQSGDVKGVLESI 649
Score = 170 bits (430), Expect = 1e-45
Identities = 43/183 (23%), Positives = 67/183 (36%), Gaps = 20/183 (10%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ VLI+G GLG E+ K++ L G + V D + + L++L+ QF +KDIG + +V
Sbjct: 27 TSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVT 86
Query: 105 AKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIV-CGLDSIVARRWINGMLLSLLQYEE 163
+ V V D QF ++V S+ + IN
Sbjct: 87 RAKLAELNAYVPVNVL---DSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCH------- 136
Query: 164 DGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLP 223
S+ I + T G GN V L +D T T + I +
Sbjct: 137 ------SSGIRFISSETRGLFGNTFVDLGDEFTVLDPT---GEEPRTGMVSDIEPDGTVT 187
Query: 224 EHC 226
Sbjct: 188 MLD 190
Score = 126 bits (317), Expect = 4e-31
Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 10/213 (4%)
Query: 258 HCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNI 317
+ + K P D D D +HI +I ++ RA + I + + + I
Sbjct: 794 SSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRI 853
Query: 318 IPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACGP 377
IPA+A+T +++ E++KL F ++A + E
Sbjct: 854 IPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNK 913
Query: 378 ANQPKYLDIE-SLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEAT 436
+ + D+KLS+LIE + ++ TM LY S +
Sbjct: 914 KYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEI------TMLSYGVSLLYASFF--PPKKL 965
Query: 437 RENLKRSLVELGLRDEGIVNVADSTTPNTLEIT 469
+E L + +L ++ ++ + LEI
Sbjct: 966 KERLNLPITQL-VKLVTKKDIPAHVSTMILEIC 997
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 186 bits (472), Expect = 4e-53
Identities = 50/245 (20%), Positives = 80/245 (32%), Gaps = 34/245 (13%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
S V +I A G E+LK++ L G +ID + + + F ++ IG ++AE A
Sbjct: 32 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAA 91
Query: 105 AKFI---NSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQY 161
+F+ NS + G V + D D F+ +F ++V + +L +
Sbjct: 92 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNS--- 148
Query: 162 EEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPR 221
IP++ T G G R+I+ P L P
Sbjct: 149 ----------QIPLLICRTYGLVGYMRIIIKEHPVIESH-----PDNALEDLRLDKPFPE 193
Query: 222 LPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGD 281
L EH Y + H P I + QW E P
Sbjct: 194 LREHFQSYDLDHM-------EKKDHSH------TPWIVIIAKYLAQWYSETNGRIPKTYK 240
Query: 282 DPNHI 286
+
Sbjct: 241 EKEDF 245
Score = 34.3 bits (78), Expect = 0.089
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 268 WSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVG-VTYRLVQGVIKNIIPAVASTNA 326
++ + + I + + ++ + V V + + A
Sbjct: 433 HKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAA 492
Query: 327 VIAATCATEVFKLATGCATSLNNYMVFN 354
+ A EV K+ T NN +++
Sbjct: 493 FLGGAAAQEVIKIITKQFVIFNNTYIYS 520
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 146 bits (371), Expect = 3e-40
Identities = 49/314 (15%), Positives = 98/314 (31%), Gaps = 21/314 (6%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ +VL++G GLG E+ K++ L G + ++D + + + QFL R +G ++AE +
Sbjct: 36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEAS 95
Query: 105 AKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEED 164
+ + P V V I+ F+ QF + S ++ +
Sbjct: 96 LERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNS----- 150
Query: 165 GQVDQSTIIPMVDGGTEGFKGNARVILPGMTACID--CTLDLFPPQVTYPLCTIASTPRL 222
I G G+ G L + + P A
Sbjct: 151 --------IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSS 202
Query: 223 PEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDD 282
++ V P+ E + ++V+ + + P
Sbjct: 203 ETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTY 262
Query: 283 PNHINWIYEKASERASQFNIVG--VTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLA 340
+ + ++ I + V+ + P AV+ A E+ K
Sbjct: 263 EEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAP----VCAVVGGILAQEIVKAL 318
Query: 341 TGCATSLNNYMVFN 354
+ NN+ F+
Sbjct: 319 SQRDPPHNNFFFFD 332
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M,
ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Length = 98
Score = 111 bits (280), Expect = 4e-30
Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 376 GPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEA 435
G + P+ + KL E+++ L S QMKSP +T +G+NRTLYM +V SIEE
Sbjct: 1 GSSQLPQNIQFSP-SAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEER 59
Query: 436 TRENLKRSLVELGLRDEGIVNVADSTTPNTLEITLRVTA 474
TR NL ++L ELGL D + VAD TTP T+ L T+
Sbjct: 60 TRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS 98
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 109 bits (273), Expect = 2e-26
Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 17/185 (9%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
KV+I+G GG+G + +A G EI +ID D I+ +NL RQ LF + D+G +K EV +
Sbjct: 120 KVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKR 179
Query: 107 FINSRIPGVKVIPHFCKIQDY-DSDFYQQFHIIVCGLDSIVA-RRWINGMLLSLLQYEED 164
+ R + V I DY D + I V D W+N
Sbjct: 180 ELLKRNSEISVSEIALNINDYTDLHKVPEADIWVVSADHPFNLINWVN-----------K 228
Query: 165 GQVDQSTIIPMVDGGTEGFKGN-ARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRLP 223
V + P ++ G + +PG T C +C + + +
Sbjct: 229 YCVRAN--QPYINAGYVNDIAVFGPLYVPGKTGCYECQKVVADLYGSEKENIDHKIKLIN 286
Query: 224 EHCIE 228
+
Sbjct: 287 S-RFK 290
Score = 29.3 bits (66), Expect = 2.5
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 321 VASTNAVIAATCATEVFKLATGCATSLN-NYMVFNDVAGIYTYTYEAERKSNCLACG 376
A N V AA CA +V K + L+ N + I ++ R C CG
Sbjct: 294 FAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIGIWSDEIKIHSQNMGRSPVCSVCG 350
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 96.2 bits (240), Expect = 2e-22
Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 29/177 (16%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
V I+G GG+G + + G ++ + D D ++L+N+NR F+ G SK + A
Sbjct: 38 AVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPHQAGLSKVQAAEH 96
Query: 107 FINSRIPGVKVIPHFCKIQDYDS-------------DFYQQFHIIVCGLDSIVARRWING 153
+ + P V H I ++ + + +++ +D+ AR IN
Sbjct: 97 TLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTIN- 155
Query: 154 MLLSLLQYEEDGQVDQSTIIPMVDGG--TEGFKGNARVILPGMTACIDCTLDLFPPQ 208
+ ++ G G+ ++I+PG +AC C L
Sbjct: 156 ----------TACNELG--QTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAA 200
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 94.3 bits (235), Expect = 2e-21
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+A
Sbjct: 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELA 93
Query: 105 AKFINSRIPGVKVIPHFCKI 124
A + P + I
Sbjct: 94 AASLKRIFPLMDATGVKLSI 113
Score = 38.5 bits (90), Expect = 0.004
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 326 AVIAATCATEVFKLATGCATSLNNYMVFNDVAGIY--------TYTYEAERKSNCLACGP 377
A++A++ A E+ S + V D+ E +C AC P
Sbjct: 225 AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSP 284
Query: 378 ANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQD 418
IE+ E ++ +HP Y + GL+ ++
Sbjct: 285 KV------IEAFTDLGWEFVKKALEHPLYLEEISGLSVIKQ 319
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 91.0 bits (227), Expect = 6e-21
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VLIIG GGLG +A G + + D D + LSNL RQ LF +DI K++V+ +
Sbjct: 30 QVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQ 89
Query: 107 FINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDG 165
+ P +++ ++ D + +++ D++ R+ IN
Sbjct: 90 RLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEIN-----------AA 138
Query: 166 QVDQSTIIPMVDGGTEGFKGNARVILPGM-TACIDCTLDLFPP 207
V +T P++ GF G V+ P C C L+P
Sbjct: 139 CVALNT--PLITASAVGFGGQLMVLTPPWEQGCYRC---LWPD 176
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 89.9 bits (224), Expect = 1e-20
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 15/166 (9%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+VLI+G GGLGC + +A G + ++D DT+ LSNL RQ L +G K E A
Sbjct: 33 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARD 92
Query: 107 FINSRIPGVKVIPHFCKIQDYD-SDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDG 165
+ P + + P + D + + + +++ D++ R +N G
Sbjct: 93 ALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLN-----------AG 141
Query: 166 QVDQSTIIPMVDGGTEGFKGNARVILPGM-TACIDCTLDLFPPQVT 210
+P+V G +G V C C LF
Sbjct: 142 CFAAK--VPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENAL 185
Score = 28.2 bits (64), Expect = 4.7
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 327 VIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACG 376
VI + A E K+ G + +V D + R C CG
Sbjct: 199 VIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRNPGCEVCG 248
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 93.0 bits (231), Expect = 3e-20
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ KVL++GAG LGC + + + G +I +D T+ SN RQ L+ +D G KAE+A
Sbjct: 327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELA 386
Query: 105 AKFINSRIPGVKVIPHFCKI 124
A + P + I
Sbjct: 387 AASLKRIFPLMDATGVKLSI 406
Score = 34.8 bits (80), Expect = 0.072
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 326 AVIAATCATEVFKLATGCATSLNNYMVFNDVAGIY--------TYTYEAERKSNCLACGP 377
A++A++ A E+ S + V D+ E +C AC P
Sbjct: 518 AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSP 577
Query: 378 A 378
Sbjct: 578 K 578
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 3e-10
Identities = 80/556 (14%), Positives = 146/556 (26%), Gaps = 205/556 (36%)
Query: 9 SPGNMAR--KWNHLRKVLE--RPGPFCTSPSSEALSFLQTSCKVLIIGAGGLG-----CE 59
+ N++R + LR+ L RP VLI G G G +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKN-----------------VLIDGVLGSGKTWVALD 169
Query: 60 LLKDIAL---MGFNEIHVIDM-----DTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSR 111
+ + M F I +++ L L + L Q D
Sbjct: 170 VCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQK--LLYQID---------------- 210
Query: 112 IPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQST 171
P++ D+ S+ + H I L ++ + LL L + V +
Sbjct: 211 -------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----LN--VQNAK 257
Query: 172 IIPMVDGG-----TEGFKGNARVI-------------LPGMT---------ACIDCTLDL 204
+ T FK + +T +DC
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 205 FPPQV--TYPL--CTIASTPRLPEH---------------------CIEY-----VKVTY 234
P +V T P IA + + + + +
Sbjct: 318 LPREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 235 PLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDDPNHINWIYEKAS 294
++ P +P + + W D + + K S
Sbjct: 376 DRLSV-----FPPSAHIPTI--------LLSLIWFDVIKSDVMVVVNK-------LHKYS 415
Query: 295 ---ERASQFNIVGVTYRL--VQGVIKNIIPAVASTNA-VIAATCATEVFKLATGCATSLN 348
++ + T + + +K + + + ++ + F L+
Sbjct: 416 LVEKQPKES-----TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 349 NYMVFNDVAGIYTY------TYEAERKSNCLACGPANQPK-YLDIESLDMKLSELIELLC 401
Y Y++ E + +LD L+ K+
Sbjct: 471 QY--------FYSHIGHHLKNIEHPERMTLF-------RMVFLDFRFLEQKI-------- 507
Query: 402 QHPSYQMKSPG--LTTMQDGR--------NRTLYMSTVRSIEE---ATRENLKRS----L 444
+H S + G L T+Q + N Y V +I + ENL S L
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 445 VELGL--RDEGIVNVA 458
+ + L DE I A
Sbjct: 568 LRIALMAEDEAIFEEA 583
Score = 41.4 bits (96), Expect = 7e-04
Identities = 31/212 (14%), Positives = 71/212 (33%), Gaps = 42/212 (19%)
Query: 279 DGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCATEVFK 338
+ N+ ++ Q +++ Y + + N A N K
Sbjct: 85 EVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR----LQPYLK 139
Query: 339 LATGCATSL--NNYMVFNDVAGIYTYTYEAERKSNCLA----------CGPANQPKYLDI 386
L L ++ + V G K+ +A C + +L++
Sbjct: 140 LRQ-ALLELRPAKNVLIDGVLGS--------GKT-WVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 387 ESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENLKRSLVE 446
++ + ++E+L Q YQ+ + +R+ + S ++ + + L+R L
Sbjct: 190 KNCN-SPETVLEML-QKLLYQI-------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 447 LGLRDEGIV--NVADSTTPNTLEI---TLRVT 473
+ +V NV ++ N + L +T
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKIL-LT 271
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 7e-08
Identities = 76/464 (16%), Positives = 135/464 (29%), Gaps = 175/464 (37%)
Query: 83 SNLNRQFL---------FRQKDIGSSKAEVAAKF---INSRIPGVKVIPHFCKI-----Q 125
S L QF F D ++ AE+ KF ++S + + F ++
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP-SKVGQFDQVLNLCLT 89
Query: 126 DYDSDFYQQ--FHIIVCGLDS--------------------IVARRWINGMLLS-LLQYE 162
++++ + + H + L I+A+R + S L +
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 163 EDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPRL 222
+G I GG +GN + DL+ TY
Sbjct: 150 GEGNAQLVAIF----GG----QGNTDDYFEEL-------RDLYQ---TYH---------- 181
Query: 223 PEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVIQWSKENPFDCPIDGDD 282
V L ++ L E + + + +++W ENP + P D
Sbjct: 182 -----VLVG---DLIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWL-ENPSNTP----D 227
Query: 283 PNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPAVASTNAVIAATCAT------EV 336
+++ S S ++GV +L T E+
Sbjct: 228 KDYL------LSIPIS-CPLIGVI-QLAH----------------YVVTAKLLGFTPGEL 263
Query: 337 FKL---ATGCATSLNNYMVFNDVAGIYTYTYEAERKSNCLACGPANQPKYLDIESLDMKL 393
ATG G+ T A +A + ES + +
Sbjct: 264 RSYLKGATGH------------SQGLVT----A------VAIAETD-----SWESFFVSV 296
Query: 394 SELIELL------CQHPSYQMKSPGLTTMQD----GRNRTLYMSTVRSIE--------EA 435
+ I +L C +Y S + ++D M ++ ++
Sbjct: 297 RKAITVLFFIGVRCYE-AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 436 TRENL-KRSLVELGLRDEGIVNVAD----STTPNTLE---ITLR 471
T +L VE+ L VN A S P +L +TLR
Sbjct: 356 TNSHLPAGKQVEISL-----VNGAKNLVVSGPPQSLYGLNLTLR 394
Score = 34.3 bits (78), Expect = 0.11
Identities = 45/210 (21%), Positives = 63/210 (30%), Gaps = 86/210 (40%)
Query: 19 HLRKVLERPG------PFCTSPSSEAL----SFLQTSCKV---LIIGAGGLGCELLKDIA 65
LRK G PF S L FL + L++ A L + KD+
Sbjct: 392 TLRKAKAPSGLDQSRIPF----SERKLKFSNRFLPVASPFHSHLLVPASDL---INKDLV 444
Query: 66 LMGFNEIHVIDM-----DTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVI-- 118
+ D+ DT D S+L R GS I+ RI V I
Sbjct: 445 KNNV-SFNAKDIQIPVYDTFDGSDL------RVLS-GS---------ISERI--VDCIIR 485
Query: 119 -P-HFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMV 176
P + + + HI+ G G S + +
Sbjct: 486 LPVKWETTTQFKAT-----HILDFGP----------------------GGA--SGLGVLT 516
Query: 177 DGGTEGFKGNARVILPGMTACIDCTLDLFP 206
+G G RVI+ G TLD+ P
Sbjct: 517 HRNKDG-TG-VRVIVAG-------TLDINP 537
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine
half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Length = 276
Score = 43.0 bits (100), Expect = 9e-05
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 197 CIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVK 231
+ + P+CT+ + P EH +++ +
Sbjct: 2 GHHHHHH--EFEKSIPICTLKNFPNAIEHTLQWAR 34
Score = 32.2 bits (72), Expect = 0.34
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 233 TYPLCTIASTPRLPEHC 249
+ P+CT+ + P EH
Sbjct: 13 SIPICTLKNFPNAIEHT 29
Score = 27.6 bits (60), Expect = 9.3
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 279 DGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNII 318
D D H+++I ++ RA ++I + + II
Sbjct: 237 DDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 36.3 bits (84), Expect = 0.004
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFL-FRQKDIGSSKAEVAA 105
+ ++GAG +G + + + V D D L+ LNR + +Q D A
Sbjct: 7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKA 66
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 36.0 bits (84), Expect = 0.025
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77
+VL++GAG +GCE D++ G+ ++ V+
Sbjct: 142 AAGKRRVLLLGAGLIGCEFANDLSSGGY-QLDVVAP 176
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein,
N-glycan biosynthesis, bacillosamine, structural
genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni}
SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A*
2npo_A
Length = 194
Score = 34.6 bits (80), Expect = 0.042
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 47 KVLIIGAGGLGCELLKDIAL-MGFNEIHVIDMDTIDLSNLNRQFLFRQKD----IGSSKA 101
K+ I GA G G D+A MG+ E +D D + + + D IG+++
Sbjct: 5 KIYIYGASGHGLVCE-DVAKNMGYKECIFLD----DFKGMKFESTLPKYDFFIAIGNNEI 59
Query: 102 --EVAAKFINSRIPGVKVIPHFCKIQDY 127
++ K + V +I I
Sbjct: 60 RKKIYQKISENGFKIVNLIHKSALISPS 87
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 34.4 bits (80), Expect = 0.065
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSNLN 86
+V+I GA G LG +L +++ + +I+ D +D++N++
Sbjct: 7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDKKLLDITNIS 46
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 34.6 bits (79), Expect = 0.070
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKA 101
KVLI+GAG +G + D+ ++++ D++ +L + + D +
Sbjct: 18 KVLILGAGNIGRAIAWDLK--DEFDVYIGDVNNENLEKVKEFATPLKVDASNFDK 70
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 34.0 bits (79), Expect = 0.079
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSNLN 86
K+LI GA G LG E+ K + E+ D+ +D++N+
Sbjct: 14 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVL 53
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 33.0 bits (76), Expect = 0.10
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89
++I G G LG + + G + + V+D + LN +F
Sbjct: 21 YIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNSEF 62
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 32.5 bits (75), Expect = 0.11
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89
++I G G +G L K ++ G ++I +ID+D + +
Sbjct: 6 YIIIAGIGRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI 47
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation,
UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Length = 127
Score = 30.8 bits (69), Expect = 0.35
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 370 SNCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTV 429
+ C + + MKLS+ + L+ + SY ++ + R L+
Sbjct: 1 GSSKVCRGVIKLSSDCLNK--MKLSDFVVLIREKYSY---PQDISLLDASNQRLLF---- 51
Query: 430 RSIEEATRENLKRSLVELGLRDEGIVNVADS 460
+ + R+L E+ L + I+ +D
Sbjct: 52 -DYDF--EDLNDRTLSEINLGNGSIILFSDE 79
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 31.9 bits (73), Expect = 0.36
Identities = 10/64 (15%), Positives = 25/64 (39%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
V+IIG GG +++ + G ++D D + L + + + + ++
Sbjct: 14 GVVIIGGGGHAKVVIESLRACGETVAAIVDADPTRRAVLGVPVVGDDLALPMLREQGLSR 73
Query: 107 FINS 110
+
Sbjct: 74 LFVA 77
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 32.2 bits (74), Expect = 0.38
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQF 89
K++I+GAG +G L +++ N+I ++D D L L ++
Sbjct: 5 KIIILGAGQVGGTLAENLVGEN-NDITIVDKDGDRLRELQDKY 46
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 31.9 bits (72), Expect = 0.44
Identities = 6/45 (13%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 47 KVLIIGAGGLG---CELLKDIALMGFNEIHVIDMDTIDLSNLNRQ 88
+ +I+G G +G L+ + + +++ +I + + +
Sbjct: 15 RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQY 59
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 31.7 bits (71), Expect = 0.52
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNL 85
VL++G+G + ++ +A + V + L
Sbjct: 25 NVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL 63
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
V I+G GGLG ++ + +M + +D+
Sbjct: 190 VAIVGVGGLGHIAVQLLKVMTPATVIALDVK 220
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 30.7 bits (68), Expect = 1.2
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNL 85
VL++G+G + L + G ++ V L
Sbjct: 5 SVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKL 42
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 30.8 bits (70), Expect = 1.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 42 LQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVID 76
+ ++ +++IIGAG +G L ++ G+N I V+D
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLD 35
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 30.6 bits (70), Expect = 1.2
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 42 LQTSCKVLIIGAGGLGCELL-------KDIAL 66
L ++++IG G +G + +++ +
Sbjct: 2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTV 33
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 30.6 bits (69), Expect = 1.3
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 42 LQTSCKVLIIGAGGLGC----ELLKDIALMGFNEIHVIDMDTI 80
+ S +LI+GAG G L + G+ + V+D +
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLAR----RGYTNVTVLDPYPV 41
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 29.9 bits (68), Expect = 1.6
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEI------HVIDMDTIDLSNLN 86
+VL+ GA G LG + K+ ++ + + ++L + N
Sbjct: 4 RVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSN 50
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 29.8 bits (67), Expect = 1.9
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 5/47 (10%)
Query: 54 GGLGCELLKDIALMGFN-----EIHVIDMDTIDLSNLNRQFLFRQKD 95
LL + +N E H D ++ + +
Sbjct: 96 ATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEA 142
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 29.9 bits (68), Expect = 1.9
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 25 ERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGC 58
E P +P + S +I+G GG G
Sbjct: 7 EHPEFLWANPE------PKKSYDAIIVGGGGHGL 34
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 29.5 bits (67), Expect = 2.2
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
++IG GGLG ++ + + + +D+D
Sbjct: 175 AVVIGVGGLGHVGIQILRAVSAARVIAVDLD 205
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 29.5 bits (67), Expect = 2.3
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 47 KVLIIGAGG-LGCELLKDIALMG-----FNEIHVIDMDTIDLSNLN 86
+ LI GA G LG EL + ++ +N + +DL++
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFP 47
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 29.2 bits (65), Expect = 2.3
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 15 RKWNHLRKVLERPGPFCTSPSSEALSFLQTSCKVLIIGAG-GLGCELLKDIALMGFNEIH 73
++ R +LE L+ ++L++G G L ++ L GF +
Sbjct: 27 GDFSSFRALLEP--------------ELRPEDRILVLGCGNS---ALSYELFLGGFPNVT 69
Query: 74 VID 76
+D
Sbjct: 70 SVD 72
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 29.4 bits (67), Expect = 2.5
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 19/63 (30%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
+LI+GAGG + ++ + + V NR S+ +
Sbjct: 119 YILILGAGGASKGIANELYKIVRPTLTVA----------NRTM---------SRFNNWSL 159
Query: 107 FIN 109
IN
Sbjct: 160 NIN 162
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 29.5 bits (67), Expect = 2.6
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMD----TIDLSNLN 86
+L+ G G +G EL + +L + +D+ D SN
Sbjct: 2 NILLFGKTGQVGWELQR--SLAPVGNLIALDVHSKEFCGDFSNPK 44
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 29.1 bits (66), Expect = 3.5
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
K+ I GAGG + AL G EI + NR KD + AE +
Sbjct: 156 KMTICGAGGAATAICIQAALDGVKEISIF----------NR------KDDFYANAEKTVE 199
Query: 107 FINSRIPGVKVIPHFCKIQDYDS--DFYQQFHIIV 139
INS+ I+D++ + I
Sbjct: 200 KINSKTDCK---AQLFDIEDHEQLRKEIAESVIFT 231
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 29.2 bits (66), Expect = 3.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 47 KVLIIGAGGLGCELLKDIALMG 68
KV IIG GG+G + ++ G
Sbjct: 496 KVAIIGCGGIGFDTAMYLSQPG 517
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 28.7 bits (65), Expect = 3.9
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 19/74 (25%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
V+ +GAGG+G + + G ++ V + S+A+ A
Sbjct: 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVA----------DLDT---------SRAQALAD 169
Query: 107 FINSRIPGVKVIPH 120
IN+ + V+
Sbjct: 170 VINNAVGREAVVGV 183
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 29.1 bits (65), Expect = 4.0
Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 5/47 (10%)
Query: 54 GGLGCELLKDIALMG-----FNEIHVIDMDTIDLSNLNRQFLFRQKD 95
LL + +E H D ++ + +
Sbjct: 263 ATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEA 309
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 28.9 bits (65), Expect = 4.2
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 47 KVLIIGAGG-LGCE----LLKDIALMGFNEIHVI---DMDTIDLSNLNRQFLFRQKDIGS 98
+ IIGA G +G + L+KD +L G + + R D+ +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSA 75
Query: 99 SKAEVAAKFINSRIPGV 115
A K + +R +
Sbjct: 76 --PGEAEKLVEARPDVI 90
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 28.7 bits (65), Expect = 4.4
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 39 LSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVID-MDTIDLSNLNRQ 88
+ K IIG G LG EL + I G + ++ L RQ
Sbjct: 140 KDECKNKGKAFIIGGGILGIELAQAIIDSGT-PASIGIILEYP----LERQ 185
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.4 bits (64), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFN 70
V I+GAG LG ++ + + GF
Sbjct: 141 SVGIMGAGVLGAKVAESLQAWGFP 164
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.9 bits (65), Expect = 4.9
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 47 KVLIIGAGG--LGCELLKDIALMGFNEIHVIDMDTI---DLSNLNRQFLFRQK 94
+V+I+ A + L + +A G +E+ ++ + L + R+
Sbjct: 530 RVVILNADTYFMAPSLAEKLATAG-HEVTIVSGVHLANYMHFTLEYPNMMRRL 581
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 28.3 bits (64), Expect = 5.6
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 19/65 (29%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
++L+IGAGG + + I + NR KAE +
Sbjct: 143 RILVIGAGGGARGIYFSLLSTAAERIDMA----------NRTV---------EKAERLVR 183
Query: 107 FINSR 111
+ R
Sbjct: 184 EGDER 188
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 28.4 bits (63), Expect = 5.7
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 7/59 (11%)
Query: 44 TSCKVLIIGA--GGLGCELLKDIALMG-----FNEIHVIDMDTIDLSNLNRQFLFRQKD 95
S ++ L L+ + + +E H D +I + +
Sbjct: 306 HSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEA 364
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 28.3 bits (64), Expect = 5.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 47 KVLIIGAGGLGC 58
++ I+GAG LG
Sbjct: 4 RIAIVGAGALGL 15
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 28.0 bits (63), Expect = 6.1
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFN 70
+LI+G G +G + G
Sbjct: 142 TLLILGTGSIGQHIAHTGKHFGMK 165
>3i83_A 2-dehydropantoate 2-reductase; structural genomics,
oxidoreductase, NADP, pantothenate BIOS PSI-2, protein
structure initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 28.3 bits (64), Expect = 6.3
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 47 KVLIIGAGGLGC 58
+L+IG G +G
Sbjct: 4 NILVIGTGAIGS 15
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 27.9 bits (63), Expect = 6.8
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 30/104 (28%)
Query: 37 EALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDI 96
E L + +VL++GAGG L G +E+ + NR
Sbjct: 112 ENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIA----------NRDM------- 154
Query: 97 GSSKAE-VAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIV 139
+KA + + +SR+ +I Y++ Q F I+V
Sbjct: 155 --AKALALRNELDHSRL----------RISRYEALEGQSFDIVV 186
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 28.1 bits (63), Expect = 6.8
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVID 76
+ L++G G +G + K+I ++HV+D
Sbjct: 37 RFLVLGGAGSIGQAVTKEIFKRNPQKLHVVD 67
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 28.1 bits (62), Expect = 7.0
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 37 EALSFLQTSCKV--LIIGAGGLGCELLKDIALMGF--------NEIHVIDMDTIDLSNLN 86
+ L ++ + ++ +I EL ++I+ M N +D+ DL
Sbjct: 41 DLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQI 100
Query: 87 RQFLFRQ---KDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHI 137
F + +DI + + ++IN+ +P P + Y + F
Sbjct: 101 SFFEYALGAAEDIANKIKQTTDEYINTILP-----PLTKALFKYVREGKYTFCT 149
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 28.0 bits (63), Expect = 7.1
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 47 KVLIIGAGGLGC 58
K+ + G GG+G
Sbjct: 10 KIAVFGLGGVGG 21
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 27.9 bits (62), Expect = 7.6
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 54 GGLGCELLKDIALMGFN-----EIHVIDMDTIDLSNLNRQFLFRQKD 95
+LL+ + + +N E H +D ++ +
Sbjct: 79 STFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDA 125
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 27.9 bits (63), Expect = 7.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 35 SSEALSFLQTSCKVLIIGAGGLGCEL 60
S+EALSF + +++++G G +G EL
Sbjct: 157 STEALSFPEVPKRLIVVGGGVIGLEL 182
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO
center for structural genomics, JCSG, protein structure
INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.1 bits (62), Expect = 7.7
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
+++I+G G G L+ I +D
Sbjct: 54 RLVILGTKGFGAHLMNVRHERPCEVIAAVDDF 85
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 27.1 bits (61), Expect = 8.6
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVI 75
KVLI GAG G +L L E H I
Sbjct: 6 KVLIYGAGSAGLQLAN--MLRQGKEFHPI 32
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 27.5 bits (62), Expect = 8.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 37 EALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVI 75
++L ++ V+++GAGG ++ + MG +I V+
Sbjct: 100 KSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVV 138
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 27.6 bits (62), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
KVL+ GAG +G L MG ++ V D+
Sbjct: 174 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 205
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.8 bits (62), Expect = 9.2
Identities = 9/60 (15%), Positives = 16/60 (26%)
Query: 23 VLERPGPFCTSPSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDL 82
+ E P KVL++G G +G G + ++
Sbjct: 159 IEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEV 218
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 27.2 bits (61), Expect = 9.4
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
KV+IIG L + + + + +I+ D
Sbjct: 2 KVIIIGGETTAYYLARSMLSRKYG-VVIINKD 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,405,820
Number of extensions: 454588
Number of successful extensions: 1343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1296
Number of HSP's successfully gapped: 105
Length of query: 478
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 381
Effective length of database: 3,993,456
Effective search space: 1521506736
Effective search space used: 1521506736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)