RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7810
(478 letters)
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 432 bits (1111), Expect = e-150
Identities = 279/458 (60%), Positives = 334/458 (72%), Gaps = 42/458 (9%)
Query: 14 ARKWNHLRKVLERPGPFCTS---PSSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFN 70
+WNH++K LER GPF PS+E+L FL +CKVL+IGAGGLGCELLK++AL GF
Sbjct: 3 EGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR 62
Query: 71 EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKFINSRIPGVKVIPHFCKIQDYDSD 130
+IHVIDMDTID+SNLNRQFLFR KDIG KAEVAA+F+N R+P V+PHF KIQD++
Sbjct: 63 QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDT 122
Query: 131 FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQVDQSTIIPMVDGGTEGFKGNARVI 190
FY+QFHIIVCGLDSI+ARRWINGML+SLL Y EDG +D S+I+P++DGGTEGFKGNARVI
Sbjct: 123 FYRQFHIIVCGLDSIIARRWINGMLISLLNY-EDGVLDPSSIVPLIDGGTEGFKGNARVI 181
Query: 191 LPGMTACIDCTLDLFPPQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCD 250
LPGMTACI+CTL+L+PPQV +P+CTIAS
Sbjct: 182 LPGMTACIECTLELYPPQVNFPMCTIASM------------------------------- 210
Query: 251 LPPRLPEHCIEYVKVIQWSKENPF--DCPIDGDDPNHINWIYEKASERASQFNIVGVTYR 308
PRLPEHCIEYV+++QW KE PF P+DGDDP HI WI++K+ ERASQ+NI GVTYR
Sbjct: 211 --PRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR 268
Query: 309 LVQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAER 368
L QGV+K IIPAVASTNAVIAA CATEVFK+AT LNNY+VFNDV G+YTYT+EAER
Sbjct: 269 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER 328
Query: 369 KSNCLACGPANQPKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMST 428
K NC AC Q KL E+++ L S QMKSP +T +G+NRTLY+ +
Sbjct: 329 KENCPACSQLPQNIQFSP---SAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQS 385
Query: 429 VRSIEEATRENLKRSLVELGLRDEGIVNVADSTTPNTL 466
V SIEE TR NL ++L ELGL D + VAD TTP T+
Sbjct: 386 VTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTV 423
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 185 bits (472), Expect = 2e-53
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 21/202 (10%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
S V +I A G E+LK++ L G +ID + + + F ++ IG ++AE A
Sbjct: 25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAA 84
Query: 105 AKF---INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQY 161
+F +NS + G V + D D F+ +F ++V + +L +
Sbjct: 85 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNS--- 141
Query: 162 EEDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVTYPLCTIASTPR 221
IP++ T G G R+I+ I+ P L P
Sbjct: 142 ----------QIPLLICRTYGLVGYMRIIIKEHP-VIESH----PDNALEDLRLDKPFPE 186
Query: 222 LPEHCIEYVKVTYPLCTIASTP 243
L EH Y + TP
Sbjct: 187 LREHFQSYDLDHMEKKDHSHTP 208
Score = 29.9 bits (67), Expect = 0.66
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 11/87 (12%)
Query: 272 NPFDCPIDGDDPNHINWIYEKASERASQFNIVGVTYRLVQGVIKNIIPA----VASTNAV 327
+ ++ D + + E G++ + + + A
Sbjct: 439 GVSNYQVEEDIGKLKSCLTGFLQEY-------GLSVMVKDDYVHEFCRYGAAEPHTIAAF 491
Query: 328 IAATCATEVFKLATGCATSLNNYMVFN 354
+ A EV K+ T NN +++
Sbjct: 492 LGGAAAQEVIKIITKQFVIFNNTYIYS 518
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 92
Score = 111 bits (279), Expect = 2e-30
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 381 PKYLDIESLDMKLSELIELLCQHPSYQMKSPGLTTMQDGRNRTLYMSTVRSIEEATRENL 440
P+ + KL E+++ L S QMKSP +T +G+NRTLYM +V SIEE TR NL
Sbjct: 2 PQNIQFSP-SAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNL 60
Query: 441 KRSLVELGLRDEGIVNVADSTTPNTLEITLR 471
++L ELGL D + VAD TTP T+ L
Sbjct: 61 SKTLKELGLVDGQELAVADVTTPQTVLFKLH 91
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 69.6 bits (169), Expect = 4e-14
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+VLI+G GGLGC + +A G + ++D DT+ LSNL RQ L +G K E A
Sbjct: 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESA 89
Query: 105 AKFINSRIPGVKVIPHFCKIQDYDSD-FYQQFHIIVCGLDSIVARRWINGMLLSLLQYEE 163
+ P + + P + D + + +++ D++ R +N
Sbjct: 90 RDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC-------- 141
Query: 164 DGQVDQSTIIPMVDGGTEGFKGNARVI 190
+ +P+V G +G V
Sbjct: 142 -----FAAKVPLVSGAAIRMEGQITVF 163
Score = 36.9 bits (84), Expect = 0.003
Identities = 21/187 (11%), Positives = 42/187 (22%), Gaps = 17/187 (9%)
Query: 207 PQVTYPLCTIASTPRLPEHCIEYVKVTYPLCTIASTPRLPEHCDLPPRLPEHCIEYVKVI 266
T L + + + KV + + L + + +
Sbjct: 61 DFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAE 120
Query: 267 QWSKENPFDCPIDGDDPNHINWIYEKASERASQFNIVG-----------------VTYRL 309
+ D + N + + + + G
Sbjct: 121 HDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFG 180
Query: 310 VQGVIKNIIPAVASTNAVIAATCATEVFKLATGCATSLNNYMVFNDVAGIYTYTYEAERK 369
+ +A VI + A E K+ G + +V D + R
Sbjct: 181 ENALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRN 240
Query: 370 SNCLACG 376
C CG
Sbjct: 241 PGCEVCG 247
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 35.6 bits (80), Expect = 0.008
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 4/165 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAA 105
KV+++G+ G E ++++ + + EI + L+ + + +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 106 KFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWIN---GMLLSLLQYE 162
GV V + + +V G + + + G + L
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121
Query: 163 EDGQVDQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPP 207
+ + G R P + A D TL + P
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 166
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 33.2 bits (75), Expect = 0.027
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
VL++GAG +G + K + G + V + L R +A
Sbjct: 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA 83
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 32.8 bits (73), Expect = 0.051
Identities = 13/107 (12%), Positives = 31/107 (28%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
V+I+G G G E+ + G+ + D + + ++ + +
Sbjct: 5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 64
Query: 107 FINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWING 153
++ + ++ + D Q LD G
Sbjct: 65 TPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGG 111
>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter
jejuni [TaxId: 197]}
Length = 193
Score = 33.0 bits (74), Expect = 0.053
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 16/107 (14%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKD----IGSSK-- 100
K+ I GA G G MG+ E +D D + + + D IG+++
Sbjct: 4 KIYIYGASGHGLVCEDVAKNMGYKECIFLD----DFKGMKFESTLPKYDFFIAIGNNEIR 59
Query: 101 AEVAAKFINSRIPGVKV------IPHFCKIQDYDSDFYQQFHIIVCG 141
++ K + V + I +++ + +I
Sbjct: 60 KKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAK 106
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 33.4 bits (74), Expect = 0.054
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSNL--NRQFLFRQKDIGSSKAEV 103
+VLI+G G +G L + + E++ +D+ + +S + F F + DI +
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWI 61
Query: 104 AAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154
+ V + + ++ +
Sbjct: 62 EYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 112
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 32.0 bits (71), Expect = 0.085
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
V+++GAG + ++ G+ + + + +R L + ++
Sbjct: 5 PVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63
Query: 107 FINSRIPGVKVIPHFCKIQDYDSDFYQQFH 136
+ P V+ +
Sbjct: 64 CKRA--PEVEWLLGVTAQSFDPQAHTVALS 91
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 32.4 bits (72), Expect = 0.094
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID 81
+ +++IIGAG +G L ++ G+N I V+D ++
Sbjct: 1 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN 37
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite
reductase {Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 31.6 bits (70), Expect = 0.10
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
KV+I+G G G EL K ++ E+ VID +
Sbjct: 2 KVVIVGNGPGGFELAKQLSQTY--EVTVIDKE 31
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like
protein HI0607 {Haemophilus influenzae [TaxId: 727]}
Length = 167
Score = 31.4 bits (70), Expect = 0.11
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77
KV++ G+GG+ ++ GF ++ +
Sbjct: 19 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR 49
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 31.2 bits (70), Expect = 0.12
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT-------IDLSNLNRQFLFRQKDIGSS 99
K+ IIGAG +G +A +I ++D+ +DL + F + G++
Sbjct: 3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTN 62
Query: 100 KAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156
A NS + V K D + I S A N +++
Sbjct: 63 NYADTA---NSDV-IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 115
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 32.1 bits (71), Expect = 0.13
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 5/112 (4%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSN---LNRQFLFRQKDIGSSKAE 102
K+LI GA G LG E+ K + E+ D+ +D++N +N+ F ++ ++ + A
Sbjct: 3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA 61
Query: 103 VAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGM 154
A + + ++ + Y IV V
Sbjct: 62 HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEP 113
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 31.9 bits (70), Expect = 0.19
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAA 105
+V++IG G G ++ + E+ ++D +L + + +
Sbjct: 3 RVMVIGGDGYCGWATALHLSKKNY-EVCIVD----NLVRRLFDHQLGLESLTPIASIHDR 57
Query: 106 KFINSRIPGVKVIPHFCKIQDYDS 129
+ G + + I D++
Sbjct: 58 ISRWKALTGKSIELYVGDICDFEF 81
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 30.5 bits (67), Expect = 0.29
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFN-EIHVIDMD 78
KV+++G G G K I L + E+ +I+ +
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 30.9 bits (68), Expect = 0.29
Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAA 105
++L+IGA G +G + K +G ++ ++ SN + + +S A +
Sbjct: 5 RILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEK--AQLLESFKASGANIVH 61
Query: 106 KFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVC 140
I+ V+ + + + + + +
Sbjct: 62 GSIDDHASLVEAVKNVDVVISTVGSLQIESQVNII 96
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 30.1 bits (67), Expect = 0.32
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
K++++G+G +G + I ++ + D+
Sbjct: 5 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 36
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId:
9823]}
Length = 196
Score = 30.5 bits (67), Expect = 0.34
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
K+ ++GAG +A +G+++I + +
Sbjct: 6 KIALLGAGPASISCASFLARLGYSDITIFEKQ 37
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 29.6 bits (66), Expect = 0.38
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMD 78
KV IIGAG +G +AL NE+ +ID+
Sbjct: 3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVF 35
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNL-NRQFLFRQKDIGSSKAEVAA 105
VL++G+G + L + G ++ V L + +
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALD 62
Query: 106 KFINSRIPGVKVIPHFCKIQDYDSDFYQQFHII 138
+ + +IP+ S Q+ H++
Sbjct: 63 AEVAKHDLVISLIPYTFHATVIKSAIRQKKHVV 95
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 30.5 bits (68), Expect = 0.48
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVID-------MDTIDLSNLNRQFLFRQKDIGS 98
K+LI G G +G +++ I + + ID ++++ + + ++ F DI
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADI-C 60
Query: 99 SKAEVAAKFINSRIPGV 115
AE+ F + V
Sbjct: 61 DSAEITRIFEQYQPDAV 77
>d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase
flavoprotein, C-terminal domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 110
Score = 28.9 bits (64), Expect = 0.52
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 288 WIYEKASERASQFNIVG--VTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGC 343
W YEK + + G V R + +I A+ + A E L
Sbjct: 4 WAYEKLKRKTGDWATAGCAVVMRKSGNTVSHIRIALTNVAPTALRAEAAEAALLGKAF 61
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 29.3 bits (65), Expect = 0.53
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMD 78
K+ I+G G +G + + G E+ +ID+D
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34
>d1t3qc1 d.87.2.1 (C:177-285) Quinoline 2-oxidoreductase medium
subunit QorM {Pseudomonas putida [TaxId: 303]}
Length = 109
Score = 28.8 bits (64), Expect = 0.57
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 287 NWIYEKASERASQFNIVGV--TYRLVQGVIKNIIPAVASTNAVIAATCATE 335
+W +++ + R + +V + G A+ +
Sbjct: 1 HWEFDEYARRKGDYALVMAAAGLSMQGGRCVAARIALGAVEERAHQAIRAN 51
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase
{Escherichia coli [TaxId: 562]}
Length = 307
Score = 30.0 bits (65), Expect = 0.64
Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 48 VLIIGAGG-LGCELLKDIALMGFNEIHVID-----MDTIDLSNLNRQFLFRQKDIGSSKA 101
+++ G G +G ++K + G +I V+D ++L +LN ++D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIM 61
Query: 102 EVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVC 140
I + +
Sbjct: 62 AGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKEL 100
>d1n62c1 d.87.2.1 (C:178-286) Carbon monoxide (CO) dehydrogenase
flavoprotein, C-terminal domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 109
Score = 28.5 bits (63), Expect = 0.67
Identities = 6/58 (10%), Positives = 13/58 (22%), Gaps = 2/58 (3%)
Query: 288 WIYEKASERASQFNIVG--VTYRLVQGVIKNIIPAVASTNAVIAATCATEVFKLATGC 343
+ YEK + + V + G + + + T
Sbjct: 4 YAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTAL 61
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ
{Thermotoga maritima [TaxId: 2336]}
Length = 194
Score = 29.2 bits (65), Expect = 0.74
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNR 87
K+ +IG GG G + + +G + + + ++T DL L
Sbjct: 2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNT-DLQVLEA 41
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 28.9 bits (64), Expect = 0.76
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMDT-------IDLSNLNRQFLFRQKDIGS 98
K+ +IGAG +G +A E+ ++D+ +D+ LF K GS
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 99 SKAEVAA 105
+ A
Sbjct: 62 NDYADTA 68
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 154
Score = 28.9 bits (64), Expect = 0.76
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 40 SFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
+ +Q KV +IG+G +G + AL ++ + D+
Sbjct: 2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV 40
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 29.5 bits (65), Expect = 0.78
Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 7/131 (5%)
Query: 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKF 107
+ IG G G + MG ++ V + S + + + + A+
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104
Query: 108 INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167
+ + F + + + + G + L+Y +
Sbjct: 105 FSGQ-------YWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA 157
Query: 168 DQSTIIPMVDG 178
+
Sbjct: 158 KVIDNHTVEAA 168
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 29.1 bits (64), Expect = 0.79
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKF 107
++ G GG+G ++ G + +I +D + + I +
Sbjct: 33 CVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNKDKFEKAMAVGATECISPKDSTKPISE 90
Query: 108 INSRIPGVKVIPHF-------CKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156
+ S + G V F I S +V G+ + MLL
Sbjct: 91 VLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLL 146
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 28.8 bits (64), Expect = 0.81
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMD-------TIDLSNLNRQFLFRQKDIGS 98
K+ ++G G +G I L G +E+ ++D D +DL + FL K +
Sbjct: 21 KITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQH-GSLFLSTPKIVFG 79
Query: 99 SKAEVAAKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHII 138
V+A I Q + I+
Sbjct: 80 KDYNVSANSKLVIIT---AGARMVSGQTRLDLLQRNVAIM 116
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 29.1 bits (65), Expect = 0.89
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 33 SPSSEAL--SFLQTSCKVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDTIDLSN 84
SP + L QT K+ ++G GG G + + + G + I+ D L
Sbjct: 1 SPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIR 56
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 28.9 bits (63), Expect = 1.1
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFN-EIHVIDMD 78
L+IG G + I + ++ D
Sbjct: 6 PFLLIGGGTAAFAAARSIRARDPGARVLIVSED 38
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga
maritima [TaxId: 2336]}
Length = 171
Score = 28.6 bits (63), Expect = 1.2
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 24/149 (16%)
Query: 47 KVLIIGAG--GLGCELLKDIALM-GFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEV 103
K+ IIGAG L+ D+ G + V MD ++ + +
Sbjct: 4 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMD-------------IDEERLDAILTI 50
Query: 104 AAKFINSRIPGVKVIPHFCKIQDY-DSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYE 162
A K++ +K D+DF +V G + R I +Y
Sbjct: 51 AKKYVEEVGADLKFEKTMNLDDVIIDADFV-INTAMVGGHTYLEKVRQIG------EKYG 103
Query: 163 EDGQVDQSTIIPMVDGGTEGFKGNARVIL 191
+D + D T + +
Sbjct: 104 YYRGIDAQEFNMVSDYYTFSNYNQLKYFV 132
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 198
Score = 28.7 bits (64), Expect = 1.3
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 45 SCKVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDTIDLSNLN 86
+ + +IG GG G + +A E + D L N+
Sbjct: 1 TAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIA 44
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 27.1 bits (60), Expect = 1.3
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID 81
+V ++G G LG L + +G + + +D
Sbjct: 3 QVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEP 36
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 28.7 bits (63), Expect = 1.4
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDI 96
+V I G G +G + + + G E+ + D ++L + F +
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASER 54
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 288
Score = 28.5 bits (62), Expect = 1.5
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 46 CKVLIIGAGGLGCELLKDIALMGFNEIHVID 76
+LI GAG G + G ++ +++
Sbjct: 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLE 32
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 28.4 bits (62), Expect = 1.5
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNL 85
++++GAGG + A+ G EI + +
Sbjct: 20 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA 58
>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana
perezi) [TaxId: 8403]}
Length = 174
Score = 27.9 bits (61), Expect = 1.9
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
+ G GG+G + G + I +
Sbjct: 31 CAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALM-GFNEIHVIDMD 78
+ I+G G LG L F D+D
Sbjct: 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVD 37
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 27.6 bits (60), Expect = 2.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMD 78
K+ ++G G LG L + G +E+
Sbjct: 2 KITVLGCGALGQLWLTALCKQG-HEVQGWLRV 32
>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 118
Score = 26.8 bits (59), Expect = 3.0
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 37 EALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDT 79
E +L VL++G G G L + + VI+ T
Sbjct: 52 ELEKYLVEDFDVLLVGTGIYGMLSLLPESKKLVEDKEVIEKPT 94
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 26.8 bits (58), Expect = 3.8
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVID 76
V +G G + + + G I++ +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN 31
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 169
Score = 26.9 bits (59), Expect = 3.8
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 47 KVLIIGAGGLG-----CELLKDIALMGFNEIHVIDMD 78
K+ IG G L+K + E+ ++D+
Sbjct: 3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIP 39
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 27.1 bits (58), Expect = 4.0
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 9/145 (6%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAK 106
K+ ++G G +G L D+ G + + + L + S + A
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKI 60
Query: 107 FINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQ 166
+ + I V + + +A L G
Sbjct: 61 IFLCTPIQLILPTLEKLIPHLS---PTAIVTDVASVKTAIAEPASQ-----LWSGFIGGH 112
Query: 167 VDQSTIIPMVDGGTEGFKGNARVIL 191
T +DG E NA +L
Sbjct: 113 PMAGTAAQGIDGAEENLFVNAPYVL 137
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 27.0 bits (58), Expect = 4.5
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 44 TSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80
+ ++IG G +G + +A N + + T+
Sbjct: 3 RHYEAVVIGGGIIGSAIAYYLAKENKN-TALFESGTM 38
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 26.6 bits (58), Expect = 4.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMD 78
K+ IIG G +G + + G ++ ID +
Sbjct: 3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase
{Neisseria meningitidis [TaxId: 487]}
Length = 125
Score = 26.3 bits (57), Expect = 4.9
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 35 SSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQK 94
SS AL+ + K+LIIG G +G E+ + +G V MD + QK
Sbjct: 16 SSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQK 75
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 27.0 bits (58), Expect = 5.0
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 47 KVLIIGAGG-LGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAA 105
+VLI+G G +G ++ +G +V+ N + A++
Sbjct: 5 RVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE---VVSNIDKVQMLLYFKQLGAKLIE 60
Query: 106 KFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLL 156
++ V + + + HI+ + N
Sbjct: 61 ASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF 111
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 26.8 bits (59), Expect = 5.2
Identities = 12/100 (12%), Positives = 23/100 (23%), Gaps = 7/100 (7%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFN--EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVA 104
+ ++G GG G + + G E I+ D L + +
Sbjct: 3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGAG 62
Query: 105 AKFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDS 144
A R ++ + G
Sbjct: 63 ADPEVGRKAAEDAKDEIEELLR-----GADMVFVTAGEGG 97
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 119
Score = 25.9 bits (56), Expect = 5.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 35 SSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDM 77
S+ AL F K+ +IGAG +G EL A +G + M
Sbjct: 12 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM 54
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 26.9 bits (58), Expect = 5.9
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 43 QTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTI 80
+ +V+++G+G +G +A G+ +H++ D
Sbjct: 4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP 40
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 25.6 bits (56), Expect = 5.9
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 41 FLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTID 81
+ +V+++G+G LG E+ + +G E+ +D
Sbjct: 7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADA 46
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 26.1 bits (57), Expect = 6.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGF-NEIHVIDMD 78
K+ +IGAG +G L A G EI + D+
Sbjct: 3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 26.2 bits (57), Expect = 6.3
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMD 78
K+ +GAG +G L +EI ++D+
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 26.2 bits (56), Expect = 6.5
Identities = 18/163 (11%), Positives = 39/163 (23%), Gaps = 4/163 (2%)
Query: 48 VLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAAKF 107
VLI+G+G G A G ++ + + I K E
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIR-TGLMGE---RFGGQILDTVDIENYISVPKTEGQKLA 59
Query: 108 INSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIVARRWINGMLLSLLQYEEDGQV 167
++ + Q + +++ ++ +
Sbjct: 60 GALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTN 119
Query: 168 DQSTIIPMVDGGTEGFKGNARVILPGMTACIDCTLDLFPPQVT 210
+ G + G+ A DCT + +
Sbjct: 120 WLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIII 162
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 115
Score = 25.5 bits (55), Expect = 6.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 35 SSEALSFLQTSCKVLIIGAGGLGCEL 60
S+EAL+ ++++G G +G EL
Sbjct: 11 STEALAPKALPQHLVVVGGGYIGLEL 36
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 26.2 bits (57), Expect = 7.0
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMD 78
K+ ++G G +G I +E+ ++D+
Sbjct: 22 KITVVGVGQVGMACAISILGKSLADELALVDVL 54
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 26.1 bits (56), Expect = 7.3
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 47 KVLIIGAGGLGCELLKDIALMGFN-EIHVIDMDTIDLSNLNRQFLFRQKDIGSSKAEVAA 105
VLI+G G +G K + GF +I+ D++ +S + + +K E +
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 62
Query: 106 KFINSRIPGVKVIPHFCKIQDYDSDFYQQFHIIVCGLDSIV 146
V+ K Y +V
Sbjct: 63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLV 103
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 25.8 bits (56), Expect = 7.4
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMGF-NEIHVIDMD 78
+V++IGAG +G + + G +EI +ID +
Sbjct: 8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
cruzi [TaxId: 5693]}
Length = 117
Score = 25.5 bits (55), Expect = 7.5
Identities = 12/82 (14%), Positives = 23/82 (28%)
Query: 35 SSEALSFLQTSCKVLIIGAGGLGCELLKDIALMGFNEIHVIDMDTIDLSNLNRQFLFRQK 94
S+EA + +VL +G G + E + V ++ R++
Sbjct: 10 SNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREE 69
Query: 95 DIGSSKAEVAAKFINSRIPGVK 116
A V+
Sbjct: 70 LTKQLTANGIQILTKENPAKVE 91
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 25.8 bits (56), Expect = 8.9
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 47 KVLIIGAGGLGCELLKDIALMG-FNEIHVIDMD 78
KV+++G G +G +A G E ++D+
Sbjct: 7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa
subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 308
Score = 26.1 bits (56), Expect = 9.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 262 YVKVIQWSKENPFDCPIDGDDPNHINWIYEKA 293
+ K IQW K NP + + YE+
Sbjct: 11 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,818,676
Number of extensions: 87558
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 81
Length of query: 478
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,185,626
Effective search space: 461208514
Effective search space used: 461208514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)