Query psy7811
Match_columns 94
No_of_seqs 105 out of 1019
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:25:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2.7E-29 5.9E-34 203.9 4.5 91 4-94 416-513 (1463)
2 cd01387 MYSc_type_XV Myosin mo 100.0 5.3E-29 1.2E-33 194.8 5.9 92 3-94 349-445 (677)
3 PTZ00014 myosin-A; Provisional 100.0 4.5E-29 9.7E-34 198.1 5.3 93 2-94 448-546 (821)
4 cd01382 MYSc_type_VI Myosin mo 99.9 8.8E-29 1.9E-33 194.5 5.3 92 3-94 385-481 (717)
5 cd01383 MYSc_type_VIII Myosin 99.9 1.1E-28 2.3E-33 193.1 5.6 74 21-94 376-449 (677)
6 cd01384 MYSc_type_XI Myosin mo 99.9 1.7E-28 3.6E-33 191.9 5.4 92 3-94 354-451 (674)
7 cd01381 MYSc_type_VII Myosin m 99.9 2.6E-28 5.6E-33 190.8 6.0 74 21-94 373-446 (671)
8 cd01378 MYSc_type_I Myosin mot 99.9 2.5E-28 5.5E-33 191.0 5.1 74 21-94 377-451 (674)
9 cd01379 MYSc_type_III Myosin m 99.9 2.5E-28 5.3E-33 190.5 4.9 74 21-94 384-457 (653)
10 cd01385 MYSc_type_IX Myosin mo 99.9 3.8E-28 8.1E-33 190.4 5.0 74 21-94 387-461 (692)
11 cd01377 MYSc_type_II Myosin mo 99.9 5.8E-28 1.3E-32 189.4 5.7 92 3-94 361-459 (693)
12 cd01380 MYSc_type_V Myosin mot 99.9 1.5E-27 3.3E-32 187.0 5.1 73 21-94 379-451 (691)
13 smart00242 MYSc Myosin. Large 99.9 1.9E-27 4E-32 186.2 5.1 92 3-94 356-453 (677)
14 cd00124 MYSc Myosin motor doma 99.9 1E-26 2.2E-31 182.1 4.8 74 21-94 373-446 (679)
15 PF00063 Myosin_head: Myosin h 99.9 4.3E-26 9.4E-31 178.5 3.5 92 3-94 350-449 (689)
16 KOG0164|consensus 99.9 1.2E-25 2.5E-30 174.5 3.3 80 15-94 375-459 (1001)
17 cd01386 MYSc_type_XVIII Myosin 99.9 3.5E-25 7.5E-30 175.2 4.9 74 21-94 384-478 (767)
18 KOG0161|consensus 99.9 6.5E-24 1.4E-28 177.6 3.0 73 21-94 459-532 (1930)
19 KOG0163|consensus 99.9 2.2E-23 4.8E-28 162.9 4.3 74 21-94 462-535 (1259)
20 KOG0162|consensus 99.8 3.2E-22 7E-27 155.9 2.1 73 21-93 394-467 (1106)
21 KOG0160|consensus 99.8 1.8E-21 4E-26 154.4 5.3 91 3-94 354-451 (862)
22 KOG4229|consensus 99.8 2.4E-19 5.2E-24 144.9 4.0 92 3-94 412-511 (1062)
23 KOG2655|consensus 26.2 94 0.002 23.7 3.3 37 3-45 78-115 (366)
24 COG2153 ElaA Predicted acyltra 21.7 46 0.001 22.2 0.8 28 35-62 117-144 (155)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.95 E-value=2.7e-29 Score=203.88 Aligned_cols=91 Identities=42% Similarity=0.740 Sum_probs=80.0
Q ss_pred cceeeccCCC-ccccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHH
Q psy7811 4 LGVTITSHRR-YHRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 77 (94)
Q Consensus 4 ~~~~i~~~~~-~~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldl 77 (94)
||-.+...++ +..++++ |-|+.||||||||||+||+||++|++|+|+.+|++|.+|||.|.+|+|.||++|+||
T Consensus 416 IN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDL 495 (1463)
T COG5022 416 INKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDL 495 (1463)
T ss_pred HHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHH
Confidence 4444444444 3445555 999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCCccccccchhcC
Q psy7811 78 VEG-KPNGLLCVLDDQAK 94 (94)
Q Consensus 78 i~~-~p~Gll~lLDee~~ 94 (94)
|++ +|.|||++|||||+
T Consensus 496 IE~~~p~GIlslLDEE~~ 513 (1463)
T COG5022 496 IEKKNPLGILSLLDEECV 513 (1463)
T ss_pred HhccCCCchHhhhcHHhc
Confidence 997 47799999999996
No 2
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.95 E-value=5.3e-29 Score=194.82 Aligned_cols=92 Identities=43% Similarity=0.711 Sum_probs=81.7
Q ss_pred ccceeeccCCCccccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHH
Q psy7811 3 KLGVTITSHRRYHRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 77 (94)
Q Consensus 3 ~~~~~i~~~~~~~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldl 77 (94)
++|..+.++.....++|+ |+|+.|+|||||||||||+||++|++++|..+|++|.+|||.|..++|.||++|+||
T Consensus 349 ~iN~~l~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldL 428 (677)
T cd01387 349 RVNALVSPTQDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINL 428 (677)
T ss_pred HHHHhcCCCCCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHH
Confidence 455555553333344444 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccccccchhcC
Q psy7811 78 VEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 78 i~~~p~Gll~lLDee~~ 94 (94)
|+++|.|||++|||||+
T Consensus 429 i~~kp~Gil~lLdee~~ 445 (677)
T cd01387 429 ISLKPYGILRILDDQCC 445 (677)
T ss_pred HhcCCCchHHHHHHHhc
Confidence 99999999999999996
No 3
>PTZ00014 myosin-A; Provisional
Probab=99.95 E-value=4.5e-29 Score=198.08 Aligned_cols=93 Identities=31% Similarity=0.416 Sum_probs=83.0
Q ss_pred CccceeeccCCCcc-ccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHH
Q psy7811 2 NKLGVTITSHRRYH-RRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCL 75 (94)
Q Consensus 2 ~~~~~~i~~~~~~~-~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l 75 (94)
++||..|.++.+.. .++++ |+|+.|||||||||||||+||++|++++|..+|++|.+|||.|..++|.||++|+
T Consensus 448 ~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~i 527 (821)
T PTZ00014 448 RNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVI 527 (821)
T ss_pred HHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHH
Confidence 35666666655433 24444 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccchhcC
Q psy7811 76 QLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 76 dli~~~p~Gll~lLDee~~ 94 (94)
|||+++|.|||++|||||+
T Consensus 528 dLie~k~~GIl~lLDEec~ 546 (821)
T PTZ00014 528 DLLCGKGKSVLSILEDQCL 546 (821)
T ss_pred HHHhcCCccHHHHHHHHhC
Confidence 9999999999999999995
No 4
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.95 E-value=8.8e-29 Score=194.54 Aligned_cols=92 Identities=33% Similarity=0.589 Sum_probs=80.6
Q ss_pred ccceeeccCCCccccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHH
Q psy7811 3 KLGVTITSHRRYHRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 77 (94)
Q Consensus 3 ~~~~~i~~~~~~~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldl 77 (94)
+||..|........++|+ |+|+.|+|||||||||||+||++|++++|..++++|.+|||+|.+++|.||++|+||
T Consensus 385 ~IN~~l~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldL 464 (717)
T cd01382 385 RVNQCFPFETSSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDL 464 (717)
T ss_pred HHHHhcCCCCCCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHH
Confidence 344444433333334444 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccccccchhcC
Q psy7811 78 VEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 78 i~~~p~Gll~lLDee~~ 94 (94)
|+++|.|||++|||||+
T Consensus 465 ie~k~~Gil~lLDee~~ 481 (717)
T cd01382 465 IEAKLNGILDILDEENR 481 (717)
T ss_pred HhcCCccHHHHhHHHhc
Confidence 99999999999999996
No 5
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.95 E-value=1.1e-28 Score=193.06 Aligned_cols=74 Identities=53% Similarity=0.947 Sum_probs=73.1
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|+|+.|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 376 E~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~ 449 (677)
T cd01383 376 ESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEEST 449 (677)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.95 E-value=1.7e-28 Score=191.92 Aligned_cols=92 Identities=43% Similarity=0.670 Sum_probs=81.1
Q ss_pred ccceeeccCCCc-cccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHH
Q psy7811 3 KLGVTITSHRRY-HRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQ 76 (94)
Q Consensus 3 ~~~~~i~~~~~~-~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ld 76 (94)
+||..|.+.++. ..++|+ |+|+.|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|
T Consensus 354 ~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ld 433 (674)
T cd01384 354 KINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLD 433 (674)
T ss_pred HHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHH
Confidence 455555554332 234444 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccccccchhcC
Q psy7811 77 LVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 77 li~~~p~Gll~lLDee~~ 94 (94)
||+++|.|||++|||||+
T Consensus 434 Lie~~~~Gil~lLdee~~ 451 (674)
T cd01384 434 LIEKKPGGIIALLDEACM 451 (674)
T ss_pred HHhcCCccHHHHHHHHHc
Confidence 999999999999999995
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.95 E-value=2.6e-28 Score=190.83 Aligned_cols=74 Identities=53% Similarity=0.897 Sum_probs=73.1
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|+|+.|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 373 E~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~ 446 (671)
T cd01381 373 ENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESK 446 (671)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.95 E-value=2.5e-28 Score=190.99 Aligned_cols=74 Identities=43% Similarity=0.780 Sum_probs=72.9
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhc-CCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~-~p~Gll~lLDee~~ 94 (94)
|+|+.|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ +|.|||++|||||+
T Consensus 377 E~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~ 451 (674)
T cd01378 377 EIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCA 451 (674)
T ss_pred cccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999 89999999999996
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.95 E-value=2.5e-28 Score=190.49 Aligned_cols=74 Identities=50% Similarity=0.854 Sum_probs=73.0
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|+|+.|+|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||+
T Consensus 384 E~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~ 457 (653)
T cd01379 384 ENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESR 457 (653)
T ss_pred ccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.94 E-value=3.8e-28 Score=190.42 Aligned_cols=74 Identities=58% Similarity=1.056 Sum_probs=73.0
Q ss_pred CCCCC-CchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSV-ITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~-n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|+|+. |+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|++||+++|.|||++|||||+
T Consensus 387 E~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~ 461 (692)
T cd01385 387 EDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESN 461 (692)
T ss_pred ccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhc
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999999996
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.94 E-value=5.8e-28 Score=189.41 Aligned_cols=92 Identities=40% Similarity=0.712 Sum_probs=81.0
Q ss_pred ccceeeccC-CCccccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCccccccc-CChHHHH
Q psy7811 3 KLGVTITSH-RRYHRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCL 75 (94)
Q Consensus 3 ~~~~~i~~~-~~~~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l 75 (94)
+||..|.+. .....++|+ |+|+.|+|||||||||||+||++|++++|..++++|.+|||.|..++| .||++|+
T Consensus 361 ~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~l 440 (693)
T cd01377 361 RINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTI 440 (693)
T ss_pred HHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHH
Confidence 455566554 223334544 999999999999999999999999999999999999999999999999 5999999
Q ss_pred HHHhcCCCccccccchhcC
Q psy7811 76 QLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 76 dli~~~p~Gll~lLDee~~ 94 (94)
+||+++|.|||++|||||+
T Consensus 441 dLie~~~~Gil~lLdee~~ 459 (693)
T cd01377 441 DLIEKNPMGILSLLDEECV 459 (693)
T ss_pred HHHhcCCCchHhhhhHHhc
Confidence 9999999999999999995
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.94 E-value=1.5e-27 Score=187.00 Aligned_cols=73 Identities=53% Similarity=0.927 Sum_probs=71.4
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|+|+.|+|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ |.|||++|||||+
T Consensus 379 E~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~ 451 (691)
T cd01380 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECR 451 (691)
T ss_pred cccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999996 6899999999995
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.94 E-value=1.9e-27 Score=186.23 Aligned_cols=92 Identities=46% Similarity=0.802 Sum_probs=80.7
Q ss_pred ccceeeccCC-CccccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHH
Q psy7811 3 KLGVTITSHR-RYHRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQ 76 (94)
Q Consensus 3 ~~~~~i~~~~-~~~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ld 76 (94)
+||..|.+.. ....++|+ |+|+.|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|++
T Consensus 356 ~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~ 435 (677)
T smart00242 356 RINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCID 435 (677)
T ss_pred HHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHH
Confidence 4555555532 22233444 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccccccchhcC
Q psy7811 77 LVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 77 li~~~p~Gll~lLDee~~ 94 (94)
||+++|.|||++|||||+
T Consensus 436 li~~~~~Gil~lLdee~~ 453 (677)
T smart00242 436 LIEKKPPGILSLLDEECR 453 (677)
T ss_pred HHHcCCccHHHHHHHHhc
Confidence 999999999999999995
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.93 E-value=1e-26 Score=182.08 Aligned_cols=74 Identities=55% Similarity=0.951 Sum_probs=73.0
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|+|+.|+|||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||+++|.||+++|||||+
T Consensus 373 E~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~ 446 (679)
T cd00124 373 EIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECL 446 (679)
T ss_pred ccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.92 E-value=4.3e-26 Score=178.46 Aligned_cols=92 Identities=48% Similarity=0.861 Sum_probs=74.9
Q ss_pred ccceeeccCC--CccccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCccccccc-CChHHH
Q psy7811 3 KLGVTITSHR--RYHRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLC 74 (94)
Q Consensus 3 ~~~~~i~~~~--~~~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~ 74 (94)
+||..+.++. ....++|+ |+|..|+|||||||||||+||++|++++|..++++|.+|||.|..++| .||++|
T Consensus 350 ~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ 429 (689)
T PF00063_consen 350 RINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPC 429 (689)
T ss_dssp HHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHH
T ss_pred hhhhccccccccccccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhh
Confidence 4455555544 23334444 999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhcCCCccccccchhcC
Q psy7811 75 LQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 75 ldli~~~p~Gll~lLDee~~ 94 (94)
++||+++|.|||++|||||+
T Consensus 430 ldLi~~~~~Gil~lLdee~~ 449 (689)
T PF00063_consen 430 LDLIEKKPKGILSLLDEECL 449 (689)
T ss_dssp HHHHHSSTTSHHHHHHHHCT
T ss_pred hhhhccccCCHHHHhhhhhh
Confidence 99999999999999999995
No 16
>KOG0164|consensus
Probab=99.91 E-value=1.2e-25 Score=174.48 Aligned_cols=80 Identities=40% Similarity=0.661 Sum_probs=75.8
Q ss_pred cccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy7811 15 HRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 89 (94)
Q Consensus 15 ~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lL 89 (94)
++++++ |.|+.|||||||||||||+||+.|.+.+++.||+||.+|||.|.+++|++|..++||++.+..|||+||
T Consensus 375 ~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlail 454 (1001)
T KOG0164|consen 375 TVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAIL 454 (1001)
T ss_pred eEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhh
Confidence 445554 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcC
Q psy7811 90 DDQAK 94 (94)
Q Consensus 90 Dee~~ 94 (94)
||||.
T Consensus 455 De~Cl 459 (1001)
T KOG0164|consen 455 DEACL 459 (1001)
T ss_pred hHHhc
Confidence 99994
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.91 E-value=3.5e-25 Score=175.17 Aligned_cols=74 Identities=36% Similarity=0.593 Sum_probs=68.9
Q ss_pred CCCCC------CchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCccccccc-CChHHHHHHHhcCC-----------
Q psy7811 21 PNPSV------ITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP----------- 82 (94)
Q Consensus 21 e~~~~------n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~ldli~~~p----------- 82 (94)
|+|++ |+|||||||||||+||++|++++|..++++|.+|||+|..+.+ .||++|+++|+++|
T Consensus 384 E~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~ 463 (767)
T cd01386 384 QNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRA 463 (767)
T ss_pred cccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhc
Confidence 99974 8999999999999999999999999999999999999987666 79999999999865
Q ss_pred ---CccccccchhcC
Q psy7811 83 ---NGLLCVLDDQAK 94 (94)
Q Consensus 83 ---~Gll~lLDee~~ 94 (94)
.|||++|||||+
T Consensus 464 ~~~~GIl~lLDEec~ 478 (767)
T cd01386 464 EDARGLLWLLDEEAL 478 (767)
T ss_pred cCCCchhhhhhHhhc
Confidence 599999999996
No 18
>KOG0161|consensus
Probab=99.88 E-value=6.5e-24 Score=177.57 Aligned_cols=73 Identities=48% Similarity=0.865 Sum_probs=70.9
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCccccccc-CChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|.|+.|||+|+||||+||+||++|++++|..+|++|++|||.|.+|+| .|-++|++||++ |+||+|+|||||.
T Consensus 459 EIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~ 532 (1930)
T KOG0161|consen 459 EIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECV 532 (1930)
T ss_pred cccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999 899999999995 8899999999994
No 19
>KOG0163|consensus
Probab=99.88 E-value=2.2e-23 Score=162.86 Aligned_cols=74 Identities=49% Similarity=0.847 Sum_probs=72.8
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhcCCCccccccchhcC
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~ 94 (94)
|=|.+|||||||||||||+||++|++++++.+|+.|.+||+.++.|.|.||++|++|++.+..|||.+||||+|
T Consensus 462 Eyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEak 535 (1259)
T KOG0163|consen 462 EYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAK 535 (1259)
T ss_pred eeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 20
>KOG0162|consensus
Probab=99.84 E-value=3.2e-22 Score=155.90 Aligned_cols=73 Identities=40% Similarity=0.713 Sum_probs=71.2
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHHHHHhc-CCCccccccchhc
Q psy7811 21 PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQA 93 (94)
Q Consensus 21 e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ldli~~-~p~Gll~lLDee~ 93 (94)
|-|+.|+||||||||.||+||+.|.+.+++.||++|.+|||.|.+|.|+||.-++|||+. +|.||+++|||.|
T Consensus 394 EIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~ 467 (1106)
T KOG0162|consen 394 EIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVC 467 (1106)
T ss_pred eecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 5889999999987
No 21
>KOG0160|consensus
Probab=99.84 E-value=1.8e-21 Score=154.36 Aligned_cols=91 Identities=47% Similarity=0.765 Sum_probs=79.5
Q ss_pred ccceeecc-CCC-ccccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHHH
Q psy7811 3 KLGVTITS-HRR-YHRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCL 75 (94)
Q Consensus 3 ~~~~~i~~-~~~-~~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l 75 (94)
+||..|.. .++ .+.++++ |.|+.|+|+||||||+||+||+.|.+|+|+.++++|..|+|.|..++|.||++|+
T Consensus 354 ~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~ 433 (862)
T KOG0160|consen 354 KINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECL 433 (862)
T ss_pred HhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchh
Confidence 34444444 333 3445555 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccchhcC
Q psy7811 76 QLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 76 dli~~~p~Gll~lLDee~~ 94 (94)
++++. |.|++++|||+|+
T Consensus 434 ~lie~-~~Gi~~Llde~c~ 451 (862)
T KOG0160|consen 434 DLIEK-PLGILALLDEECM 451 (862)
T ss_pred hhhcc-ccchhhccchhcc
Confidence 99997 9999999999995
No 22
>KOG4229|consensus
Probab=99.76 E-value=2.4e-19 Score=144.95 Aligned_cols=92 Identities=45% Similarity=0.806 Sum_probs=80.7
Q ss_pred ccceeeccCCCc---cccccC-----CCCCCCchhhHHHhhhhHHHHHHHHHHhhHhHHHhhhhcCCcccccccCChHHH
Q psy7811 3 KLGVTITSHRRY---HRRRLN-----PNPSVITFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLC 74 (94)
Q Consensus 3 ~~~~~i~~~~~~---~~~~~~-----e~~~~n~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~ 74 (94)
+||..+...... -.++++ |+|..|+|||+|+|+|||++|.+|.+++|..++++|..|+|.|..+.|.||..|
T Consensus 412 rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ 491 (1062)
T KOG4229|consen 412 RINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRR 491 (1062)
T ss_pred hHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccch
Confidence 455555554432 334444 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccchhcC
Q psy7811 75 LQLVEGKPNGLLCVLDDQAK 94 (94)
Q Consensus 75 ldli~~~p~Gll~lLDee~~ 94 (94)
+++|..+|+||+.+||||++
T Consensus 492 ldli~~kp~gil~liDees~ 511 (1062)
T KOG4229|consen 492 LDLISPKPMGILSLIDEESR 511 (1062)
T ss_pred hhhhccCccchhheecccCc
Confidence 99999999999999999874
No 23
>KOG2655|consensus
Probab=26.15 E-value=94 Score=23.67 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=24.7
Q ss_pred ccceeeccCCCccccccCCCCCC-CchhhHHHhhhhHHHHHHHH
Q psy7811 3 KLGVTITSHRRYHRRRLNPNPSV-ITFEQLCINYANEHLQYYFN 45 (94)
Q Consensus 3 ~~~~~i~~~~~~~~~~~~e~~~~-n~feql~iN~~nE~l~~~~~ 45 (94)
+++++|.++|||.- +.+. ++| +-.++|..++..+|+.
T Consensus 78 ~l~LtvidtPGfGD-----~vdns~~w-~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGD-----AVDNSNCW-RPIVNYIDSQFDQYLD 115 (366)
T ss_pred EEeeEEeccCCCcc-----cccccccc-hhhhHHHHHHHHHHHh
Confidence 57788888888875 2333 233 5567888888777653
No 24
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=21.70 E-value=46 Score=22.24 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHhhHhHHHhhhhcCCc
Q psy7811 35 YANEHLQYYFNQHVFQYEQEEYNKEGIR 62 (94)
Q Consensus 35 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~ 62 (94)
-|.+-||.+|-+.-|....++|.+.||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 4778889999999999999999999984
Done!