RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7811
(94 letters)
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 119 bits (302), Expect = 3e-33
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP G+L
Sbjct: 386 SFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGIL 445
Query: 87 CVLDDQAK 94
+LD++ +
Sbjct: 446 SLLDEECR 453
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 119 bits (299), Expect = 6e-33
Identities = 43/67 (64%), Positives = 54/67 (80%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQLCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL KP GLL
Sbjct: 394 SFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLL 453
Query: 87 CVLDDQA 93
+LD+++
Sbjct: 454 YLLDEES 460
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 111 bits (280), Expect = 3e-30
Identities = 41/66 (62%), Positives = 52/66 (78%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP GLL
Sbjct: 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLL 438
Query: 87 CVLDDQ 92
+LD++
Sbjct: 439 SLLDEE 444
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 106 bits (266), Expect = 2e-28
Identities = 38/69 (55%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 85
+FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN C+ L+E KP G+
Sbjct: 380 SFEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGI 439
Query: 86 LCVLDDQAK 94
L +LD++ +
Sbjct: 440 LSLLDEECR 448
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 106 bits (266), Expect = 2e-28
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 28 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 87
FEQ CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP G++
Sbjct: 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIA 444
Query: 88 VLDD 91
+LD+
Sbjct: 445 LLDE 448
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 104 bits (261), Expect = 9e-28
Identities = 37/68 (54%), Positives = 52/68 (76%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN L L+ KP ++
Sbjct: 379 SFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIM 438
Query: 87 CVLDDQAK 94
++D+++K
Sbjct: 439 SLIDEESK 446
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 103 bits (259), Expect = 2e-27
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 28 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 87
FEQ CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E K G+L
Sbjct: 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESKL-GILS 444
Query: 88 VLDDQAK 94
+LD++ +
Sbjct: 445 LLDEECR 451
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 98.1 bits (244), Expect = 2e-25
Identities = 39/66 (59%), Positives = 49/66 (74%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP G+L
Sbjct: 378 SFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGIL 437
Query: 87 CVLDDQ 92
+LDDQ
Sbjct: 438 RILDDQ 443
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 95.9 bits (239), Expect = 9e-25
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 28 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 86
FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P G+L
Sbjct: 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505
Query: 87 CVLDDQA 93
+LD++
Sbjct: 506 SLLDEEC 512
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 95.7 bits (238), Expect = 1e-24
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF DN CL L E KP GLL
Sbjct: 382 SFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLL 441
Query: 87 CVLDDQA 93
+LD+++
Sbjct: 442 SLLDEES 448
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 88.4 bits (220), Expect = 4e-22
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 28 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 86
FEQLCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E P G+L
Sbjct: 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451
Query: 87 CVLDDQ 92
+LD++
Sbjct: 452 SLLDEE 457
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 88.0 bits (218), Expect = 5e-22
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQLCIN ANE +QYYFNQH+F +EQ+EY EG+ R +E+ DN L + KP GLL
Sbjct: 390 SFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLL 449
Query: 87 CVLDDQAK 94
+LD++++
Sbjct: 450 ALLDEESR 457
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 86.9 bits (216), Expect = 1e-21
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 28 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 86
FEQ CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P G+
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443
Query: 87 CVLDD 91
+LDD
Sbjct: 444 SILDD 448
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 84.1 bits (208), Expect = 1e-20
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
+FEQ CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NG+L
Sbjct: 414 SFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGIL 473
Query: 87 CVLDDQAK 94
+LD++ +
Sbjct: 474 DILDEENR 481
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 57.7 bits (140), Expect = 2e-11
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 29 EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 88
EQL IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK +L +
Sbjct: 481 EQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540
Query: 89 LDDQ 92
L+DQ
Sbjct: 541 LEDQ 544
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 41.4 bits (97), Expect = 1e-05
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 27 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 86
TFE+LC NY E LQ F+ F E Y +EG+ +EF L E P +
Sbjct: 396 TFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSPGTTV 445
Query: 87 CVLD 90
++D
Sbjct: 446 ALVD 449
>gnl|CDD|219359 pfam07274, DUF1440, Protein of unknown function (DUF1440). This
family contains a number of bacterial proteins of
unknown function approximately 180 residues long. These
are possibly integral membrane proteins.
Length = 136
Score = 28.4 bits (64), Expect = 0.37
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 22 NPSVITFEQLCINYANEHLQYYFNQHVFQY 51
NP +QL I H Y ++ H +
Sbjct: 25 NPPQTLLDQLGIPDPITHATYTYSGHAVPW 54
>gnl|CDD|223824 COG0753, KatE, Catalase [Inorganic ion transport and metabolism].
Length = 496
Score = 28.5 bits (64), Expect = 0.48
Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 33/85 (38%)
Query: 15 HRRRLNPNPSVITFEQLCIN-----YANEH----LQYYFN-------------------Q 46
R RL PN + Q+ +N N ++ N Q
Sbjct: 351 QRYRLGPN-----YHQIPVNRPKCPVHNNQRDGQMRMGINTGPANYEPNSFGDNPEAPEQ 405
Query: 47 HVFQYEQEEYNKEGIRWRHIEFSDN 71
F E + R R I D
Sbjct: 406 PGFVEPPERVEGDKQRRRAISDDDY 430
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 27.8 bits (62), Expect = 0.74
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 20 NPNPSVITFEQL--CINYANEH 39
NP +V+T EQL ++YANEH
Sbjct: 184 NPTGTVLTKEQLKELVDYANEH 205
>gnl|CDD|224403 COG1486, CelF, Alpha-galactosidases/6-phospho-beta-glucosidases,
family 4 of glycosyl hydrolases [Carbohydrate transport
and metabolism].
Length = 442
Score = 27.6 bits (62), Expect = 0.85
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 36 ANEHLQYYFNQHVFQYEQEEYNKEGIR---WRHIEFSDNTLCLQ-LVEGKPNGLL 86
++ H YY+ + + + +E K G R E L + ++ KP L
Sbjct: 255 SSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE 309
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 27.7 bits (62), Expect = 0.95
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 15 HRRRLNPNPSVITFEQLCINYANEHLQYYFN 45
RL P ITF + N +N L+++FN
Sbjct: 149 DMARLRPPLKTITFIGMMFNSSNADLKHFFN 179
>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
Validated.
Length = 409
Score = 27.5 bits (62), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 20 NPNPSVITFEQL--CINYANEH 39
NP +V+T EQL ++YA E+
Sbjct: 187 NPTGTVLTKEQLKAWVDYAKEN 208
>gnl|CDD|176870 cd08861, OtcD1_ARO-CYC_like, N-terminal and C-terminal
aromatase/cyclase domains of Streptomyces rimosus
OtcD1 and related domains. This family includes the N-
and C- terminal aromatase/cyclase (ARO/CYC) domains of
Streptomyces rimosus OtcD1 and related domains. It
belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. ARO/CYC domains participate in the
diversification of aromatic polyketides by promoting
polyketide cyclization. They occur in two architectural
forms, didomain and monodomain. Didomain
aromatase/cyclases (ARO/CYCs), contain two ARO/CYC
domains, and are associated with C7-C12 first ring
cyclized polyketides. Streptomyces rimosus OtcD1 is a
didomain ARO/CYC. The polyketide Oxytetracycline (OTC)
is a broad spectrum antibiotic made by Streptomyces
rimosus. The gene encoding OtcD1 is part of
oxytetracycline (OTC) gene cluster. Disruption of this
gene results in the production of novel polyketides
having shorter chain lengths (by up to 10 carbons) than
OTC. Monodomain ARO/CYCs have a single ARO/CYC domain,
and are often associated with C9-C14 first ring
cyclizations, these latter domains belong to a
different subfamily in the SRPBCC superfamily.
Length = 142
Score = 25.4 bits (56), Expect = 4.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 16 RRRLNPNPSVITFEQL 31
RR L+P I F Q
Sbjct: 62 RRVLDPEGRRIVFRQE 77
>gnl|CDD|200594 cd10972, CE4_DAC_u3_5s, Putative catalytic NodB homology domain
of uncharacterized bacterial polysaccharide
deacetylases which consist of a 5-stranded beta/alpha
barrel. This family contains uncharacterized bacterial
polysaccharide deacetylases. Although their biological
functions remain unknown, all members of the family are
predicted to contain a conserved domain with a
5-stranded beta/alpha barrel, which is similar to the
catalytic NodB homology domain of rhizobial NodB-like
proteins, belonging to the larger carbohydrate esterase
4 (CE4) superfamily.
Length = 216
Score = 25.4 bits (56), Expect = 4.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 42 YYFNQHVFQYEQEEYNKEGIRW 63
+Y N F + Q EY ++ +RW
Sbjct: 55 FYVNPGPFGFGQPEYAEQKLRW 76
>gnl|CDD|221303 pfam11902, DUF3422, Protein of unknown function (DUF3422). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 426 to 444 amino acids in length.
Length = 419
Score = 25.2 bits (56), Expect = 6.0
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 60 GIRW-RHIEFSDNTLCLQLVEGKP 82
+RW RH EFS T +P
Sbjct: 74 RLRWERHTEFSTYTFFRPGPGDEP 97
>gnl|CDD|220149 pfam09234, DUF1963, Domain of unknown function (DUF1963). This
domain is found in a set of hypothetical bacterial
proteins. Its exact function has not, as yet, been
described.
Length = 221
Score = 25.0 bits (55), Expect = 7.3
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 39 HLQYYFNQHVFQYEQEEYNKEGIRWRHIE-FSDNTLCLQLVE 79
LQ++ + + ++ G R + E ++ L L+E
Sbjct: 47 ILQFFIDLDDDDWGDSPEDQTGFRVIYFEDIIEDLLPKDLIE 88
>gnl|CDD|234674 PRK00168, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 159
Score = 24.3 bits (54), Expect = 9.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 21 PNPSVITFEQLCINYANEH 39
PN V++F+ L +++A E
Sbjct: 62 PNVEVVSFDGLLVDFAREV 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,882,622
Number of extensions: 392861
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 31
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)